BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013048
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08602|PGTA_RAT Geranylgeranyl transferase type-2 subunit alpha OS=Rattus
norvegicus GN=Rabggta PE=1 SV=1
Length = 567
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 154/295 (52%), Gaps = 21/295 (7%)
Query: 1 MHGRPRKPLKPEDAAASAAKAE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E A A + E KL++ QS + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +QH E + P+ +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 61 DFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHNRSLLLSNLLKRKVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH RS LL L + G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 TVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQA 288
D V + + CL C S P T + SR L+L ++A
Sbjct: 239 AEPHDVLCCVH---------VSREEACLSVCFSRPLT---VGSRMGTLLLMVDEA 281
>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 130/241 (53%), Gaps = 9/241 (3%)
Query: 1 MHGRPRKPLKPEDAAASAAKAE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E A A + E KL++ QS + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +Q E P+ L +++ EL +ES LR N KSYG WHHR W+L
Sbjct: 61 DFATLWNCRREVLQQ--LETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLG 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F + D RNFH W+YRRFVA +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHNRSLLLSNLLKRKVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH RS LL L + G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 T 234
Sbjct: 239 A 239
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P + +L +EL +V++A
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFT 221
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLL 129
+ AW + +W+L G + + LR L
Sbjct: 222 DPNDQSAWFYHRWLL--GRADPQDALRCL 248
>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens
GN=RABGGTA PE=1 SV=2
Length = 567
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 130/241 (53%), Gaps = 9/241 (3%)
Query: 1 MHGRPRKPLKPEDAAASAAKAE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E A A + E KL++ QS + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +Q E P+ L +++ EL +ES LR N KSYG WHHR W+L
Sbjct: 61 DFATLWNCRREVLQQ--LETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLG 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F + D RNFH W+YRRFVA +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHNRSLLLSNLLKRKVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH RS LL L + G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 T 234
Sbjct: 239 A 239
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P + +L +EL +V++A
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFT 221
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLL 129
+ AW + +W+L G + + LR L
Sbjct: 222 DPNDQSAWFYHRWLL--GRADPQDALRCL 248
>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus
GN=Rabggta PE=1 SV=1
Length = 567
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 134/241 (55%), Gaps = 9/241 (3%)
Query: 1 MHGRPRKPLKPEDAAASAAKAE-KLRVLQSQ---FLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E A A + E KL++ QS + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +Q E P+ L +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 61 DFATLWNCRREVLQQ--LETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F +AD RNFH W+YRRFVAA + +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHNRSLLLSNLLKRKVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH RS LL L + G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLRELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 T 234
Sbjct: 239 A 239
>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 131/241 (54%), Gaps = 9/241 (3%)
Query: 1 MHGRPRKPLKPEDAAASAAKAE-KLRVLQS---QFLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E A A + E KL++ Q+ + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQTATQTVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +Q E P+ L +++ EL +ES LR N KSYG WHHR W+L
Sbjct: 61 DFATLWNCRREVLQR--LEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLG 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F + D RNFH W+YRRFVA+ +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWARELELCARFLEVDERNFHCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHNRSLLLSNLLKRKVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH RS LL L + G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 T 234
Sbjct: 239 A 239
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P + +L +EL +V++A
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFT 221
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLL 129
+ AW + +W+L G + + LR L
Sbjct: 222 DPNDQSAWFYHRWLL--GRADPQDALRCL 248
>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 132/241 (54%), Gaps = 9/241 (3%)
Query: 1 MHGRPRKPLKPEDAAASAAKAE-KLRVLQS---QFLHNHHNHIYSKEAVELSTKLLETNP 56
MHGR + E A A + E KL++ Q+ + +EL++++L NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
+ T WN R+ +Q E P+ L +++ EL +ES LR N KSYG WHHR W+LS
Sbjct: 61 DFATLWNCRREVLQQ--LEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118
Query: 117 K-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175
+ + EL L +F + D RNFH W+YRRFVAA +EL +T+ +I NFSNY
Sbjct: 119 RLPEPNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNY 178
Query: 176 SAWHNRSLLLSNLLKRKVEGFVSK--EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
S+WH RS LL L + G + E VL E E V A FTDP+DQS WFYH WLL +
Sbjct: 179 SSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238
Query: 234 T 234
Sbjct: 239 A 239
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSL--KSILDEELRVVESALRQ 100
E + + L+ N Y++W+YR + + DS P + +L +EL +V++A
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFT 221
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLL 129
+ AW + +W+L G + + LR L
Sbjct: 222 DPNDQSAWFYHRWLL--GRADPQDALRCL 248
>sp|O94412|PGTA_SCHPO Geranylgeranyl transferase type-2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bet4 PE=3 SV=1
Length = 344
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 1 MHGRPRKPLKPED----AAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNP 56
MHG R L E A AK E+ R L S+F YS+ ++L+T+LL+ NP
Sbjct: 1 MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDP----DSLKSILDEELRVVESALRQNFKSYGAWHHRK 112
E Y+ WNYR+ ++ ND P + + +LD EL+ V S ++ K Y ++HR+
Sbjct: 61 ETYSVWNYRR-----EILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRR 115
Query: 113 WILSKG-HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-----EEDELKYTED 166
W L + + + E+ + +K AD+RNFH W+YRR+V + + R+ + E++YT
Sbjct: 116 WCLENAPYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTS 175
Query: 167 MICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSK---EKVLPDEYEFVHQAIFTDPDDQSG 223
I NFSN+SA HNR+ L+ +L + + K +++L E + +HQA+FTDPDD S
Sbjct: 176 AIATNFSNFSALHNRTKLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSV 235
Query: 224 WFYHLWLL 231
W YH WL+
Sbjct: 236 WIYHRWLM 243
>sp|Q55DQ4|PGTA_DICDI Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium
discoideum GN=rabggta PE=3 SV=2
Length = 311
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 17/240 (7%)
Query: 1 MHGRPRKPLKPEDAAASAAKAEKLRVLQS--------QFLHNHHNHIYSKEAVELSTKLL 52
MHG + ++ + A A + ++L ++S + L N Y + ++ +S +L
Sbjct: 1 MHGVLK--VRTSEEKAKAQRLKELEKIESYNKLVKSFEELREKQNGRYDEISLSVSKLVL 58
Query: 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112
NPE YT WNYR+LA+ + TE + + L+ I E++ +E +++ KSY W HR+
Sbjct: 59 IENPEFYTIWNYRRLAIL-QFTETKENSE-LQVIYQNEMKFLEECIQRFTKSYWIWFHRQ 116
Query: 113 WI-LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171
WI L + + E++L K D RNFH W +RRF+ N EDELKYT + + N
Sbjct: 117 WIALRMDNCDWEREMKLCTKLLNFDLRNFHCWGHRRFILKHSNIKLEDELKYTTEKVEQN 176
Query: 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
FSNYSAWH RS +L + K + EK+L +E+E V A++T+P D S W YH WL+
Sbjct: 177 FSNYSAWHQRSSILPKIYKEPEQLL---EKIL-EEFELVRNAVYTEPKDSSSWIYHKWLV 232
>sp|Q00618|PGTA_YEAST Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1
SV=3
Length = 327
Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 21/248 (8%)
Query: 1 MHGRPRKPLKPEDAAASAAKAEK----LRVLQSQFLHNHHNHIYSKEAVELSTKLLETNP 56
MHG RK E + EK R L L+ IYS EA++ +++LLE NP
Sbjct: 1 MHGIKRKQWTKELLRQKRVQDEKKIYDYRSLTENVLNMRDEKIYSIEALKKTSELLEKNP 60
Query: 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
E WNYR+ + +E + D+EL V L+ K Y W+HR W+L
Sbjct: 61 EFNAIWNYRRDIIASLASELEI------PFWDKELVFVMMLLKDYPKVYWIWNHRLWVLK 114
Query: 117 KGHSS----IDNELRLLDKFQKADSRNFHAWNYRRFVAASM----NRS-EEDELKYTEDM 167
+S EL +++K + D+RN+H W+YRR V ++ N+S +++E +YT
Sbjct: 115 HYPTSSPKVWQTELAVVNKLLEQDARNYHGWHYRRIVVGNIESITNKSLDKEEFEYTTIK 174
Query: 168 ICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227
I NN SNYSAWH R ++S + ++ G ++++ + E ++ A+FTD +DQS WFY
Sbjct: 175 INNNISNYSAWHQRVQIISRMFQKGEVG--NQKEYIRTEISYIINAMFTDAEDQSVWFYI 232
Query: 228 LWLLDQTV 235
W + +
Sbjct: 233 KWFIKNDI 240
>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans
GN=BET4 PE=3 SV=1
Length = 371
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 39/269 (14%)
Query: 2 HGRPRKPLKPE----DAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPE 57
HG R L E K + R L + N YS EA+ + +LL NPE
Sbjct: 3 HGIKRVKLSEEAKRLKLEKDQIKIKNYRQLTDEIFELRANENYSDEALIKTNELLIINPE 62
Query: 58 LYTAWNYRK-LAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116
YT WNYR+ + + + + ND D + IL+++L V L++ K Y W+HR+W+L
Sbjct: 63 FYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKFPKCYWIWNHRRWLLF 122
Query: 117 K----GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN-----------RSEEDEL 161
+ G + E ++ K D RNFH W+YRRFV +M + DE
Sbjct: 123 ELVKLGKVNWKYEFGVVSKLLDLDQRNFHGWHYRRFVVKNMELECKNDTTLILKINLDEF 182
Query: 162 KYTEDMICNNFSNYSAWHNRSLLLS---NLLKRK----------------VEGFVSKEKV 202
YT I +FSN+SAWHNR+ L+ NL++++ +E F + +
Sbjct: 183 NYTTLKIQKDFSNFSAWHNRTKLIPKIYNLIQQQQQQQQKDGKIFGDLPGIELFQNPILL 242
Query: 203 LPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
L ++ E + ++ P+D S W Y WLL
Sbjct: 243 LKNDLEMIKTGVYMSPEDTSVWLYLYWLL 271
>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1
Length = 346
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 102/187 (54%), Gaps = 18/187 (9%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S A++L+ + ++ NP YT W +R++ ++ +L L EEL+ V+ +
Sbjct: 60 STRALQLTGEAIQLNPGNYTVWQFRRVVLE-----------ALGVDLREELKFVDRIAGE 108
Query: 101 NFKSYGAWHHRKWILSK-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEED 159
N K+Y WHHR+W+ K G ++ NEL K D++N+HAW++R++V ++ ED
Sbjct: 109 NTKNYQIWHHRRWLAEKLGADAVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALG-GWED 167
Query: 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219
EL Y + ++ ++ N SAW+ R +++ + G V+ ++ E + QAI P+
Sbjct: 168 ELAYCQQLLEDDIYNNSAWNQRYFVVTR--SPLLGGLVAMREL---EVNYTVQAIRASPE 222
Query: 220 DQSGWFY 226
++S W Y
Sbjct: 223 NESPWRY 229
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185
L+L + + + N+ W +RR V ++ +ELK+ + + N NY WH+R L
Sbjct: 64 LQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLA 123
Query: 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
L + +E EF + D + W + W+L
Sbjct: 124 EKL----------GADAVTNELEFTKKIFSQDAKNYHAWSHRQWVL 159
>sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1
Length = 333
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S A+ L+ + + N YT W++R+L ++ SLK L E VE
Sbjct: 62 SSRALALTAEAIGLNAGNYTVWHFRRLLLE-----------SLKVDLHVEREFVERVASG 110
Query: 101 NFKSYGAWHHRKWILSK-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEED 159
N K+Y WHHR+W+ K G + ++EL K D++++HAW++R++V ++ ED
Sbjct: 111 NSKNYQIWHHRRWVAEKLGPEARNSELEFTKKILSVDAKHYHAWSHRQWVLQNLG-GWED 169
Query: 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219
EL Y +++ + N SAW+ R +++ + V G + + E F +AI + P+
Sbjct: 170 ELSYCSELLAEDIFNNSAWNQRYFVIT---RSPVLGGLKAMR--ESEVLFTVEAIISYPE 224
Query: 220 DQSGWFYHLWLL--DQTVRVDSPQLVS 244
++S W Y L + T+ V+ Q+ S
Sbjct: 225 NESSWRYLRGLFKDESTLYVNDAQVSS 251
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW 143
K + L + A+ N +Y WH R+ +L + E +++ +S+N+ W
Sbjct: 59 KELSSRALALTAEAIGLNAGNYTVWHFRRLLLESLKVDLHVEREFVERVASGNSKNYQIW 118
Query: 144 NYRRFVAASMN-RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188
++RR+VA + + EL++T+ ++ + +Y AW +R +L NL
Sbjct: 119 HHRRWVAEKLGPEARNSELEFTKKILSVDAKHYHAWSHRQWVLQNL 164
>sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwp1 PE=1 SV=1
Length = 294
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 40 YSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99
YS A+ L+ L+ NP YT W YR + H S +D EL ++
Sbjct: 57 YSLRALNLTGFLIMNNPAHYTVWAYRFQILNHT-----------PSYIDNELEWLDEIAE 105
Query: 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEED 159
K+Y WHHR+ ILS + + EL K + DS+N+H W+YR ++ + N +
Sbjct: 106 DFQKNYQVWHHRQKILSLT-KNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYSQ- 163
Query: 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKV---LPDEYEFVHQAIFT 216
ELK T +++ + N SAW++R +L F + + V L +E ++ I
Sbjct: 164 ELKLTNELLEKDIYNNSAWNHRFYVL----------FETSKVVSWSLEEELNYLKDKILF 213
Query: 217 DPDDQSGWFYHLWLLDQT 234
PD+QS W Y +LD++
Sbjct: 214 APDNQSAWNYLCGVLDKS 231
>sp|P29703|FNTA_YEAST Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAM2 PE=1 SV=1
Length = 316
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 12/187 (6%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S A++L+ ++++ P YT WNYR V+H ++E++ D++ L++EL ++
Sbjct: 48 SPRALQLTAEIIDVAPAFYTIWNYRFNIVRHMMSESE---DTVL-YLNKELDWLDEVTLN 103
Query: 101 NFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEED 159
N K+Y W +R+ +L S S EL +L DS+N+H W+YR++ + +
Sbjct: 104 NPKNYQIWSYRQSLLKLHPSPSFKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDFQH- 162
Query: 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219
EL Y D+I + N SAW +R N + +SK + L DE +F+ I P
Sbjct: 163 ELAYASDLIETDIYNNSAWTHRMFYWVN-----AKDVISKVE-LADELQFIMDKIQLVPQ 216
Query: 220 DQSGWFY 226
+ S W Y
Sbjct: 217 NISPWTY 223
>sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1
Length = 377
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP 80
+EK R + F S+ A +L+ +E N YT W++R++ ++
Sbjct: 93 SEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLR---------- 142
Query: 81 DSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140
SL+ L EE+ + + + + K+Y WHHR+ +L + EL + D++N+
Sbjct: 143 -SLQKDLQEEMNYITAIIEEQPKNYQVWHHRR-VLVEWLKDPSQELEFIADILSQDAKNY 200
Query: 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200
HAW +R++V R ++EL+Y + ++ + N S W+ R ++SN G+ S
Sbjct: 201 HAWQHRQWVIQEF-RLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN-----TTGY-SDR 253
Query: 201 KVLPDEYEFVHQAIFTDPDDQSGWFY 226
VL E ++ + I P ++S W Y
Sbjct: 254 AVLEREVQYTLEMIKLVPHNESAWNY 279
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVS 198
N+ W++RR + S+ + ++E+ Y +I NY WH+R +L+ L
Sbjct: 130 NYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWL---------- 179
Query: 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
K E EF+ + D + W + W++ +
Sbjct: 180 --KDPSQELEFIADILSQDAKNYHAWQHRQWVIQE 212
>sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1
Length = 377
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP 80
+EK R + F S+ A +L+ +E N YT W++R++ ++
Sbjct: 93 SEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLR---------- 142
Query: 81 DSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140
SL+ L EE+ + + + + K+Y WHHR+ +L + EL + D++N+
Sbjct: 143 -SLQKDLQEEMNYIIAIIEEQPKNYQVWHHRR-VLVEWLKDPSQELEFIADILNQDAKNY 200
Query: 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200
HAW +R++V R ++EL+Y + ++ + N S W+ R ++SN G+ S
Sbjct: 201 HAWQHRQWVIQEF-RLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN-----TTGY-SDR 253
Query: 201 KVLPDEYEFVHQAIFTDPDDQSGWFY 226
VL E ++ + I P ++S W Y
Sbjct: 254 AVLEREVQYTLEMIKLVPHNESAWNY 279
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVS 198
N+ W++RR + S+ + ++E+ Y +I NY WH+R +L+ L
Sbjct: 130 NYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWL---------- 179
Query: 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233
K E EF+ + D + W + W++ +
Sbjct: 180 --KDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212
>sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
Length = 326
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 8 PLKPEDA---AASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNY 64
PL +D A E+ R F + + S A+ L+ + L N YT W++
Sbjct: 20 PLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLTEETLLLNSGNYTVWHF 79
Query: 65 RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK-GHSSID 123
R+L ++ +L L EEL +E N K+Y WHHR+W+ K G
Sbjct: 80 RRLVLE-----------ALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAG 128
Query: 124 NELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183
EL + D++++HAW++R++ ++ EDEL Y +++ + N SAW+ R
Sbjct: 129 RELEFTRRVLSLDAKHYHAWSHRQWTLRALG-GWEDELDYCHELLEADVFNNSAWNQRYY 187
Query: 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226
+++ + + G + E + E + +AI T+P ++S W Y
Sbjct: 188 VIT---QSPLLGGL--EAMRESEVSYTIKAILTNPANESSWRY 225
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEED- 159
N +Y WH R+ +L + + EL +++ + +S+N+ W++RR+VA +
Sbjct: 70 NSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAGR 129
Query: 160 ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219
EL++T ++ + +Y AW +R L R + G+ DE ++ H+ + D
Sbjct: 130 ELEFTRRVLSLDAKHYHAWSHRQWTL-----RALGGW-------EDELDYCHELLEADVF 177
Query: 220 DQSGWFYHLWLLDQT 234
+ S W +++ Q+
Sbjct: 178 NNSAWNQRYYVITQS 192
>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1
Length = 379
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLK-----------SLQKDLHEEMNYITAIIEE 161
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V + ++E
Sbjct: 162 QPKNYQVWHHRR-VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNE 219
Query: 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ R ++SN G+ + VL E ++ + I P +
Sbjct: 220 LQYVDQLLKEDVRNNSVWNQRYFVISN-----TTGY-NDRAVLEREVQYTLEMIKLVPHN 273
Query: 221 QSGWFY 226
+S W Y
Sbjct: 274 ESAWNY 279
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150
++ A+ N +Y WH R+ +L + E+ + + +N+ W++RR +
Sbjct: 117 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 151 ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFV 210
+ R EL++ D++ + NY AW +R ++ K+ +E ++V
Sbjct: 177 EWL-RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF------------KLWDNELQYV 223
Query: 211 HQAIFTDPDDQSGWFYHLWLLDQTV 235
Q + D + S W +++ T
Sbjct: 224 DQLLKEDVRNNSVWNQRYFVISNTT 248
>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2
Length = 375
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 93/186 (50%), Gaps = 19/186 (10%)
Query: 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
S+ A +L+ +E N YT W++R++ ++ SL+ L EE+ + + + +
Sbjct: 109 SERAFKLTRDAIELNAANYTVWHFRRVLLK-----------SLQKDLHEEMNYISAIIEE 157
Query: 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160
K+Y WHHR+ +L + EL + D++N+HAW +R++V + ++E
Sbjct: 158 QPKNYQVWHHRR-VLVEWLRDPSQELEFIADILTQDAKNYHAWQHRQWVIQEF-KLWDNE 215
Query: 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220
L+Y + ++ + N S W+ R ++SN G+ + +L E ++ + I P +
Sbjct: 216 LQYVDQLLKEDVRNNSVWNQRYFVISN-----TTGY-NDRAILEREVQYTLEMIKLVPHN 269
Query: 221 QSGWFY 226
+S W Y
Sbjct: 270 ESAWNY 275
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150
++ A+ N +Y WH R+ +L + E+ + + +N+ W++RR +
Sbjct: 113 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLV 172
Query: 151 ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFV 210
+ R EL++ D++ + NY AW +R ++ K+ +E ++V
Sbjct: 173 EWL-RDPSQELEFIADILTQDAKNYHAWQHRQWVIQEF------------KLWDNELQYV 219
Query: 211 HQAIFTDPDDQSGWFYHLWLLDQTV 235
Q + D + S W +++ T
Sbjct: 220 DQLLKEDVRNNSVWNQRYFVISNTT 244
>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3
SV=1
Length = 322
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 24/228 (10%)
Query: 7 KPLKPEDAAASAAKAEKLRVLQSQFLHNHHNH----IYSKE----AVELSTKLLETNPEL 58
KPL +D +L S+ + N+ + SKE ++L ++++ NP
Sbjct: 23 KPLAQDDGPHPICP-----ILYSEVFKDKMNYFRAILKSKEKSLRVLDLLEEVIQENPSN 77
Query: 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118
YT W YR+ + K E D ++++ + +E+ ++ + K+Y W+HR++I+ K
Sbjct: 78 YTIWYYRREVL--KAIEQD---ETIEYDIQQEMNLLNDMGETDPKNYQIWNHRRFIVEKY 132
Query: 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178
S + E L D++N+HAW++R+++ + R EL + ++ + N S W
Sbjct: 133 IGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLLKTY-RDWNGELAMVDKLLSLDHRNNSVW 191
Query: 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226
++R ++SNL ++ E EF I P+++S W Y
Sbjct: 192 NHRFFVISNLNPSPFPL-----SLIEREVEFAFNHIRHSPNNESPWSY 234
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSE------EDELKYTEDMICNNFSNYSAWH 179
L LL++ + + N+ W YRR V ++ + E + E+ DM + NY W+
Sbjct: 64 LDLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWN 123
Query: 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
+R ++ K G +KEK EF+ + D + W + WLL
Sbjct: 124 HRRFIV-----EKYIGSDNKEK------EFLSGVLLEDAKNYHAWSHRQWLL 164
>sp|Q9Y765|FNTA_CANAX Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1
Length = 306
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114
N + Y WNYR+L + + N++D D + E ++E+ L + K++ W +RKW+
Sbjct: 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYR-----EFPILEAMLSSDPKNHHVWSYRKWL 153
Query: 115 LSKGHSSID-NELRLLDKFQKADSRNFHAWNYRRFVAAS-----MNRSEEDELKYTEDMI 168
+ D EL +DK D +N AW++R F+ S + + ++EL Y +D I
Sbjct: 154 VDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKI 213
Query: 169 CNNFSNYSAWH 179
N S W+
Sbjct: 214 VKCPQNPSTWN 224
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 40 YSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99
YS+ A+ ++ + YT W YR +++ N L +EL E
Sbjct: 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRN----------LYDELDWCEEIAL 97
Query: 100 QNFKSYGAWHHRKWILSKGHSSIDN------ELRLLDKFQKADSRNFHAWNYRRFVAASM 153
N K+Y W++R+ I+ + +N E +L+ +D +N H W+YR+++ +
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFPILEAMLSSDPKNHHVWSYRKWLVDTF 157
Query: 154 N-RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQ 212
+ ++ EL + + +I + N SAW +R LL + + ++ + + +E +V
Sbjct: 158 DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS------KKHLATDNTIDEELNYVKD 211
Query: 213 AIFTDPDDQSGWFYHL 228
I P + S W Y L
Sbjct: 212 KIVKCPQNPSTWNYLL 227
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 140 FHAWNYRRFVAASM-NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVS 198
+ W YR + ++ NR+ DEL + E++ +N NY W+ R L++ +++ F
Sbjct: 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126
Query: 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232
E+ + + +DP + W Y WL+D
Sbjct: 127 YR-----EFPILEAMLSSDPKNHHVWSYRKWLVD 155
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 51 LLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110
+L ++P+ + W+YRK V ND+ +EL V+ + + K+ AW H
Sbjct: 136 MLSSDPKNHHVWSYRKWLVDTFDLHNDA----------KELSFVDKVIDTDLKNNSAWSH 185
Query: 111 RKWIL-SKGH----SSIDNELRLL-DKFQKADSRNFHAWNYRRFVAASMNRS 156
R ++L SK H ++ID EL + DK K +N WNY + +RS
Sbjct: 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRS 236
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 91 LRVVESALRQNFKSYGAWHHRKWILSK-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149
L + E + + Y W +R IL + ++ +EL ++ + +N+ WNYR+ +
Sbjct: 53 LHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLI 112
Query: 150 AAS---MNRSEED---ELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVL 203
+N ++ D E E M+ ++ N+ W R L V+ F
Sbjct: 113 IGQIMELNNNDFDPYREFPILEAMLSSDPKNHHVWSYRKWL--------VDTFDLHNDA- 163
Query: 204 PDEYEFVHQAIFTDPDDQSGWFYHLWLL 231
E FV + I TD + S W + +LL
Sbjct: 164 -KELSFVDKVIDTDLKNNSAWSHRFFLL 190
>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Danio rerio GN=ptar1 PE=2 SV=1
Length = 426
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 30/211 (14%)
Query: 31 FLHNHHNHIYSKEA-VELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89
L+ +EA V++++ LL NP+ TAWN RK +Q + + D
Sbjct: 73 LLYRQRKQWLDREALVDITSTLLLLNPDFTTAWNVRKELLQCGVLNPEKD---------- 122
Query: 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149
L + + AL ++ KS W HR+W+L + L K + R
Sbjct: 123 -LYLGKLALSKHPKSPETWIHRRWVLQR-----------LQKECSPSGQELKDSAESRRQ 170
Query: 150 AASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF 209
+ R+ ++E++ + SNY+AW +R +L N+ K + KVL DE
Sbjct: 171 CERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQNMAKGNL-------KVLHDELSS 223
Query: 210 VHQAIFTDPDDQSGWFYHLWLLDQTVRVDSP 240
+ D SG+ Y LL + SP
Sbjct: 224 TRLWVSMHVSDHSGFHYRQHLLKALAKELSP 254
>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1
Length = 431
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 61/244 (25%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102
E ++++ LL NP+ TAWN RK +Q +L + D L++ + AL +
Sbjct: 85 ELIDVTCTLLLLNPDFTTAWNVRKELIQS---------GTLNPVKD--LQLGKLALTKFP 133
Query: 103 KSYGAWHHRKWILSKG-----------------------HSSIDNELRLLDKFQKADSRN 139
KS W HR+W+L + + + E+ + + N
Sbjct: 134 KSPETWIHRRWVLQRVVQELVVAAVVGKDATCPETYERIQTIVQEEMHVCYEAAGRYPSN 193
Query: 140 FHAWNYRRFVAASMN----RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK--- 192
+++W++R +V + + DEL T+ + + S++S +H R LL +LL +
Sbjct: 194 YNSWSHRIWVIQHLGNLNVKLLIDELSSTKHWVSMHVSDHSGFHYRQFLLKSLLCKTLKD 253
Query: 193 ------VEGFVSKEK--VLPDEYEFV-HQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQLV 243
V ++ EK LP E E + +Q F P +LL++ ++++ +L+
Sbjct: 254 SDNVTAVPDLIANEKNPCLPREGEAIWNQICFDLP----------YLLEEEMKLNR-ELL 302
Query: 244 SSWP 247
S+P
Sbjct: 303 DSYP 306
>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Homo sapiens GN=PTAR1 PE=2 SV=2
Length = 402
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 30/193 (15%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102
E ++++ LL NP+ TAWN RK + +L I D L + + AL +
Sbjct: 86 ELIDVTCTLLLLNPDFTTAWNVRKELILS---------GTLNPIKD--LHLGKLALTKFP 134
Query: 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162
KS W HR+W+L + + E L K + +R + M E +
Sbjct: 135 KSPETWIHRRWVLQQ----LIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGR 190
Query: 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222
Y SNY+AW +R +L +L K V K+L DE D S
Sbjct: 191 YP--------SNYNAWSHRIWVLQHLAKLDV-------KILLDELSSTKHWASMHVSDHS 235
Query: 223 GWFYHLWLLDQTV 235
G+ Y +LL +
Sbjct: 236 GFHYRQFLLKSLI 248
>sp|Q0IHB3|PTR1A_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-A OS=Xenopus laevis GN=ptar1-a PE=2 SV=1
Length = 432
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 38/169 (22%)
Query: 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102
E ++++ LL NP+ TAWN RK +Q +L + D L++ + AL +
Sbjct: 86 ELIDVTCTLLLLNPDFTTAWNVRKELIQS---------GTLNPVKD--LQLGKLALTKFP 134
Query: 103 KSYGAWHHRKWILSK-----------------------GHSSIDNELRLLDKFQKADSRN 139
KS W HR+W L + + ++ E+ + + N
Sbjct: 135 KSPETWIHRRWALQRLVQELVVAAVVDKDAICPETSERIQAIVEEEMHVCCEAAGRYPSN 194
Query: 140 FHAWNYRRFVAASMNRSEE----DELKYTEDMICNNFSNYSAWHNRSLL 184
+++W++R +V + + DEL T+ + + S++S +H R L
Sbjct: 195 YNSWSHRIWVVQHLGNLKATLLIDELSSTKHWVSMHVSDHSGFHYRQFL 243
>sp|B3P8M3|RRF2M_DROER Ribosome-releasing factor 2, mitochondrial OS=Drosophila erecta
GN=EF-G2 PE=3 SV=1
Length = 718
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 168 ICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY- 226
+ + + SA + +++ LK V G + DE++ H+ DP ++
Sbjct: 372 LADEYREVSAVQSGDVVICAGLKSTVTGDLLTSSEEDDEFDESHELFAIDPQIPDAVYFC 431
Query: 227 ------------HLWLLDQTVRVDSPQLVSSWPTPGSDLIL--LGDRCLDGCASSPFTRF 272
L Q R D P L S+ + +L +G+ +D S + +
Sbjct: 432 SIEPPSVSSQTAMEQALKQLQRED-PSLRVSYDSVTGQTVLGGMGELHMDIIKSRILSEY 490
Query: 273 HLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTNKDLVWKPLSSCNSKAAQVWVTQL--N 330
+D PL + + +A+E +T++V+ E+ +K V L ++A + + N
Sbjct: 491 KIDVDLGPLQIAYKEAIESPALTTLSVEKEIAGSKQSVSITLEVVKNQAELFSLDKSPEN 550
Query: 331 LPDGNTHSSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQ 380
LP+ NT ++ V +G IS+ RV Q VETQ
Sbjct: 551 LPNLNTLRPRILQV-----LRKGSISA--------LERGPRVGGQVVETQ 587
>sp|Q5PXT2|LMCD1_PIG LIM and cysteine-rich domains protein 1 OS=Sus scrofa GN=LMCD1 PE=2
SV=1
Length = 363
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 64 YRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100
YR+ + H+L D DP + +L+ EL+V+E ++Q
Sbjct: 152 YRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQ 188
>sp|Q17QE2|LMCD1_BOVIN LIM and cysteine-rich domains protein 1 OS=Bos taurus GN=LMCD1 PE=2
SV=1
Length = 363
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 64 YRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104
YR+ + H+L D DP + +L+ EL+V+E ++Q +KS
Sbjct: 152 YRRRQLMHQLPIYDQDPSRCRGLLENELKVMEEFVKQ-YKS 191
>sp|P12555|HN_NDVD Hemagglutinin-neuraminidase OS=Newcastle disease virus (strain
D26/76) GN=HN PE=3 SV=1
Length = 616
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 225 FYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLY 284
Y + + ++T + SP +++ PGS RC + C + +T +PLV Y
Sbjct: 426 LYPMTVSNKTATLHSPYTFNAFTRPGSVPCQASARCPNSCVTGVYT------DPYPLVFY 479
Query: 285 FNQAVEGV 292
N + GV
Sbjct: 480 RNHTLRGV 487
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 21/135 (15%)
Query: 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218
D + YT + N N W + LL + KRK++ V L D FV + F D
Sbjct: 211 DVVMYTS--LVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID--AFVKEGKFLDA 266
Query: 219 DDQSGWFYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHL--DS 276
++ L ++ +R+ + ++ + L+ C++GC F+L
Sbjct: 267 EE---------LYNEMIRMSIAPNIFTYTS------LINGFCMEGCVDEARQMFYLMETK 311
Query: 277 RTFPLVLYFNQAVEG 291
FP V+ + + G
Sbjct: 312 GCFPDVVAYTSLING 326
>sp|Q9Q2W5|HN_NDVK Hemagglutinin-neuraminidase OS=Newcastle disease virus (strain
Kansas) GN=HN PE=1 SV=1
Length = 577
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 225 FYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLY 284
Y + + ++T + SP +++ PGS RC + C + +T +PL+ Y
Sbjct: 426 LYPMTVSNKTATLHSPYTFNAFTRPGSIPCQASARCPNSCVTGVYT------DPYPLIFY 479
Query: 285 FNQAVEGVNSSTITVDSE 302
N + GV + + DSE
Sbjct: 480 RNHTLRGVFGTML--DSE 495
>sp|P32884|HN_NDVB Hemagglutinin-neuraminidase OS=Newcastle disease virus (strain
Beaudette C/45) GN=HN PE=1 SV=1
Length = 577
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 225 FYHLWLLDQTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLY 284
Y + + ++T + SP +++ PGS RC + C + +T +PL+ Y
Sbjct: 426 LYPMTVSNKTATLHSPYTFNAFTRPGSIPCQASARCPNSCVTGVYT------DPYPLIFY 479
Query: 285 FNQAVEGVNSSTITVDSE 302
N + GV + + DSE
Sbjct: 480 RNHTLRGVFGTML--DSE 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,825,019
Number of Sequences: 539616
Number of extensions: 7045091
Number of successful extensions: 17977
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 17718
Number of HSP's gapped (non-prelim): 87
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)