Query 013048
Match_columns 450
No_of_seqs 205 out of 1179
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 23:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0529 Protein geranylgeranyl 100.0 9E-58 2E-62 463.2 24.8 359 1-446 1-368 (421)
2 KOG0530 Protein farnesyltransf 100.0 2.8E-42 6.1E-47 333.1 14.0 207 8-233 26-233 (318)
3 PLN02789 farnesyltranstransfer 100.0 4.6E-39 1E-43 325.4 21.5 208 9-233 21-229 (320)
4 COG5536 BET4 Protein prenyltra 100.0 1.9E-37 4E-42 301.4 16.0 226 1-233 3-239 (328)
5 PLN02789 farnesyltranstransfer 99.9 8.7E-26 1.9E-30 228.8 20.7 176 38-232 85-266 (320)
6 KOG0529 Protein geranylgeranyl 99.9 2E-23 4.3E-28 213.0 12.2 137 41-187 91-241 (421)
7 KOG0530 Protein farnesyltransf 99.9 3.1E-22 6.7E-27 194.4 12.0 158 57-238 41-198 (318)
8 COG5536 BET4 Protein prenyltra 99.7 1.3E-17 2.8E-22 163.3 11.7 139 39-187 88-239 (328)
9 TIGR00990 3a0801s09 mitochondr 99.4 1E-11 2.2E-16 135.5 21.8 162 36-224 343-504 (615)
10 TIGR00990 3a0801s09 mitochondr 99.4 9.7E-12 2.1E-16 135.7 21.4 174 36-236 306-482 (615)
11 PRK15359 type III secretion sy 99.3 5E-11 1.1E-15 107.4 14.4 126 46-188 14-139 (144)
12 PRK12370 invasion protein regu 99.3 5.3E-10 1.2E-14 121.1 22.8 178 42-236 278-456 (553)
13 PRK15359 type III secretion sy 99.3 8.4E-11 1.8E-15 105.9 13.3 125 92-233 14-138 (144)
14 TIGR02521 type_IV_pilW type IV 99.2 6.8E-09 1.5E-13 94.8 21.3 174 32-232 39-214 (234)
15 PRK12370 invasion protein regu 99.2 1.7E-09 3.6E-14 117.3 19.6 163 42-230 321-484 (553)
16 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-09 3.4E-14 108.6 17.5 119 35-171 75-195 (296)
17 PRK11189 lipoprotein NlpI; Pro 99.1 3.4E-09 7.3E-14 106.2 19.7 120 42-175 43-166 (296)
18 KOG4626 O-linked N-acetylgluco 99.1 7.9E-10 1.7E-14 118.3 14.4 183 37-234 129-333 (966)
19 TIGR02917 PEP_TPR_lipo putativ 99.1 1.3E-08 2.9E-13 111.0 22.0 185 27-226 25-266 (899)
20 KOG4626 O-linked N-acetylgluco 99.1 5.3E-09 1.1E-13 112.1 17.7 169 36-231 332-500 (966)
21 KOG1126 DNA-binding cell divis 99.1 6.5E-10 1.4E-14 119.6 10.8 179 42-246 438-616 (638)
22 PRK09782 bacteriophage N4 rece 99.1 1.2E-08 2.6E-13 117.5 21.7 162 35-224 553-714 (987)
23 PRK15174 Vi polysaccharide exp 99.0 1.1E-08 2.4E-13 113.2 19.9 174 34-218 222-405 (656)
24 KOG1126 DNA-binding cell divis 99.0 2.1E-09 4.5E-14 115.8 13.5 159 36-221 467-625 (638)
25 PRK15174 Vi polysaccharide exp 99.0 3.1E-08 6.6E-13 109.8 22.6 189 33-236 119-367 (656)
26 TIGR02917 PEP_TPR_lipo putativ 99.0 3.9E-08 8.4E-13 107.4 23.1 140 35-189 136-275 (899)
27 PRK11447 cellulose synthase su 98.9 8.8E-08 1.9E-12 112.3 21.6 183 34-231 279-505 (1157)
28 PRK09782 bacteriophage N4 rece 98.9 9.9E-08 2.1E-12 110.0 20.8 157 36-220 588-744 (987)
29 TIGR02552 LcrH_SycD type III s 98.8 1.3E-07 2.9E-12 82.1 14.4 126 47-186 5-130 (135)
30 PRK10370 formate-dependent nit 98.8 1.8E-07 3.8E-12 89.0 16.1 126 85-223 53-180 (198)
31 TIGR03302 OM_YfiO outer membra 98.8 6.1E-07 1.3E-11 85.5 19.9 169 24-218 33-234 (235)
32 PRK11447 cellulose synthase su 98.8 6E-07 1.3E-11 105.4 23.0 69 34-115 471-539 (1157)
33 TIGR02552 LcrH_SycD type III s 98.8 1.9E-07 4.2E-12 81.1 13.7 127 92-232 4-130 (135)
34 TIGR02521 type_IV_pilW type IV 98.8 2.2E-06 4.8E-11 78.1 21.2 157 34-217 75-233 (234)
35 PRK10370 formate-dependent nit 98.8 2.4E-07 5.2E-12 88.0 15.2 125 38-176 53-179 (198)
36 PRK11788 tetratricopeptide rep 98.8 1.2E-06 2.5E-11 89.1 21.3 185 34-233 45-261 (389)
37 PRK15179 Vi polysaccharide bio 98.8 3.4E-07 7.4E-12 102.1 18.7 120 37-171 99-218 (694)
38 KOG1125 TPR repeat-containing 98.8 2.6E-07 5.6E-12 98.7 16.8 190 33-236 294-557 (579)
39 PRK15179 Vi polysaccharide bio 98.7 5.1E-07 1.1E-11 100.7 19.6 137 42-192 69-205 (694)
40 PRK11788 tetratricopeptide rep 98.7 1.6E-06 3.6E-11 88.0 21.7 126 34-174 117-247 (389)
41 KOG1155 Anaphase-promoting com 98.7 7.8E-07 1.7E-11 93.2 17.3 135 42-190 347-481 (559)
42 PLN03088 SGT1, suppressor of 98.6 5.5E-07 1.2E-11 92.9 15.0 105 31-149 9-113 (356)
43 KOG1155 Anaphase-promoting com 98.6 4.6E-06 1E-10 87.6 21.5 138 83-234 342-479 (559)
44 KOG0547 Translocase of outer m 98.6 8E-07 1.7E-11 93.7 15.7 156 37-219 339-494 (606)
45 KOG0553 TPR repeat-containing 98.6 5E-07 1.1E-11 90.4 13.4 122 17-155 77-198 (304)
46 KOG0547 Translocase of outer m 98.6 1E-06 2.3E-11 92.8 15.8 175 37-236 372-552 (606)
47 PF13429 TPR_15: Tetratricopep 98.6 8.5E-07 1.8E-11 87.3 14.1 142 34-190 120-263 (280)
48 PF13429 TPR_15: Tetratricopep 98.6 9.7E-07 2.1E-11 86.8 13.7 187 37-239 57-266 (280)
49 PF01239 PPTA: Protein prenylt 98.6 7.7E-08 1.7E-12 64.8 4.0 29 89-117 1-29 (31)
50 PRK10049 pgaA outer membrane p 98.5 4.6E-06 9.9E-11 94.1 20.2 181 33-230 246-470 (765)
51 PF01239 PPTA: Protein prenylt 98.5 9.6E-08 2.1E-12 64.3 4.2 30 124-153 1-30 (31)
52 PRK10049 pgaA outer membrane p 98.5 3.7E-06 8.1E-11 94.8 19.5 148 25-188 16-163 (765)
53 KOG0553 TPR repeat-containing 98.5 3.8E-07 8.1E-12 91.2 10.1 104 120-236 95-198 (304)
54 KOG0548 Molecular co-chaperone 98.5 1.4E-05 3E-10 85.1 21.1 198 16-232 219-471 (539)
55 KOG2076 RNA polymerase III tra 98.5 5.2E-06 1.1E-10 92.5 17.8 137 21-172 136-272 (895)
56 TIGR03302 OM_YfiO outer membra 98.4 1.9E-05 4.2E-10 75.2 17.9 169 54-236 28-218 (235)
57 PRK14574 hmsH outer membrane p 98.4 1.5E-05 3.2E-10 90.7 19.7 177 28-234 38-216 (822)
58 COG3063 PilF Tfp pilus assembl 98.4 3.1E-05 6.8E-10 75.3 19.0 141 31-186 42-184 (250)
59 PLN03088 SGT1, suppressor of 98.4 3.8E-06 8.2E-11 86.7 13.0 102 85-188 16-117 (356)
60 KOG0624 dsRNA-activated protei 98.3 3.9E-05 8.5E-10 78.4 18.0 192 22-231 39-267 (504)
61 PF07711 RabGGT_insert: Rab ge 98.2 8.2E-07 1.8E-11 75.0 3.4 59 259-332 4-63 (102)
62 COG3063 PilF Tfp pilus assembl 98.2 2.1E-05 4.6E-10 76.5 13.0 126 85-224 49-176 (250)
63 cd05804 StaR_like StaR_like; a 98.2 6.5E-05 1.4E-09 75.5 17.3 162 33-218 52-217 (355)
64 KOG0548 Molecular co-chaperone 98.1 6.2E-05 1.3E-09 80.3 15.4 131 42-186 341-471 (539)
65 KOG3060 Uncharacterized conser 98.1 0.00058 1.3E-08 67.5 19.8 176 26-225 53-229 (289)
66 PF13414 TPR_11: TPR repeat; P 98.0 2.2E-05 4.7E-10 60.8 7.7 67 139-218 2-69 (69)
67 PF13414 TPR_11: TPR repeat; P 98.0 3.2E-05 7E-10 59.8 8.6 68 58-137 2-69 (69)
68 KOG3060 Uncharacterized conser 98.0 0.0013 2.8E-08 65.1 21.0 175 26-223 12-190 (289)
69 KOG2076 RNA polymerase III tra 98.0 0.00012 2.7E-09 81.8 14.6 120 85-218 153-272 (895)
70 cd05804 StaR_like StaR_like; a 97.9 0.00056 1.2E-08 68.8 17.9 157 38-221 20-182 (355)
71 cd00189 TPR Tetratricopeptide 97.9 0.00025 5.4E-09 53.9 11.5 99 107-219 2-100 (100)
72 PRK15363 pathogenicity island 97.9 0.00026 5.7E-09 65.4 13.4 101 22-136 33-133 (157)
73 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00037 8.1E-09 58.2 13.2 100 28-141 6-111 (119)
74 cd00189 TPR Tetratricopeptide 97.9 0.00025 5.4E-09 53.9 11.2 88 36-137 12-99 (100)
75 KOG4234 TPR repeat-containing 97.9 0.00022 4.7E-09 68.5 12.7 118 12-176 86-203 (271)
76 PRK02603 photosystem I assembl 97.9 0.00012 2.6E-09 67.2 10.8 118 101-220 31-153 (172)
77 PRK02603 photosystem I assembl 97.9 0.00024 5.2E-09 65.3 12.5 118 45-175 19-154 (172)
78 KOG1156 N-terminal acetyltrans 97.8 0.00074 1.6E-08 73.7 17.3 143 26-183 9-151 (700)
79 KOG0624 dsRNA-activated protei 97.8 0.0027 5.8E-08 65.3 19.8 198 13-224 144-378 (504)
80 PRK11906 transcriptional regul 97.8 0.00062 1.4E-08 72.3 15.4 158 51-230 240-415 (458)
81 PRK11906 transcriptional regul 97.8 0.0011 2.3E-08 70.6 16.8 138 42-184 275-415 (458)
82 KOG0550 Molecular chaperone (D 97.7 0.00039 8.4E-09 72.6 12.5 170 37-233 182-369 (486)
83 KOG2002 TPR-containing nuclear 97.7 0.002 4.3E-08 73.0 18.8 183 37-234 543-763 (1018)
84 KOG4162 Predicted calmodulin-b 97.7 0.00091 2E-08 74.1 15.1 122 87-221 666-788 (799)
85 PRK10153 DNA-binding transcrip 97.7 0.0029 6.3E-08 68.8 19.0 154 50-225 328-490 (517)
86 KOG1125 TPR repeat-containing 97.6 0.00065 1.4E-08 73.2 12.8 104 85-190 444-557 (579)
87 KOG1173 Anaphase-promoting com 97.6 0.0021 4.6E-08 69.3 16.3 171 38-223 326-525 (611)
88 CHL00033 ycf3 photosystem I as 97.6 0.00093 2E-08 61.0 11.9 134 86-221 14-154 (168)
89 PF13432 TPR_16: Tetratricopep 97.6 0.00025 5.5E-09 54.3 6.9 61 32-105 5-65 (65)
90 KOG0550 Molecular chaperone (D 97.6 0.00046 1E-08 72.1 10.5 182 20-219 48-319 (486)
91 PRK14574 hmsH outer membrane p 97.5 0.0021 4.7E-08 73.4 16.4 138 35-190 79-218 (822)
92 TIGR00540 hemY_coli hemY prote 97.5 0.0098 2.1E-07 62.3 20.2 187 33-235 162-384 (409)
93 PRK10153 DNA-binding transcrip 97.5 0.0024 5.3E-08 69.4 15.9 128 42-176 359-488 (517)
94 PRK15363 pathogenicity island 97.5 0.0014 3E-08 60.6 11.8 102 102-217 32-133 (157)
95 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0032 7E-08 52.4 13.2 89 86-176 17-111 (119)
96 CHL00033 ycf3 photosystem I as 97.5 0.0019 4.2E-08 58.9 12.7 120 43-175 17-154 (168)
97 PF12569 NARP1: NMDA receptor- 97.5 0.0094 2E-07 64.9 19.7 162 36-221 50-262 (517)
98 KOG0495 HAT repeat protein [RN 97.5 0.0061 1.3E-07 67.0 17.9 202 36-252 663-887 (913)
99 PF13432 TPR_16: Tetratricopep 97.4 0.00078 1.7E-08 51.6 7.5 53 86-139 12-64 (65)
100 PRK14720 transcript cleavage f 97.4 0.0048 1E-07 70.8 16.6 200 20-224 26-260 (906)
101 COG4783 Putative Zn-dependent 97.3 0.019 4.1E-07 61.2 19.2 123 29-166 311-433 (484)
102 KOG4162 Predicted calmodulin-b 97.3 0.0085 1.8E-07 66.7 16.7 125 38-175 663-788 (799)
103 PF12895 Apc3: Anaphase-promot 97.3 0.0012 2.5E-08 53.5 7.3 80 37-131 2-83 (84)
104 PRK14720 transcript cleavage f 97.2 0.005 1.1E-07 70.6 14.8 124 51-188 23-163 (906)
105 PF13371 TPR_9: Tetratricopept 97.2 0.0012 2.5E-08 51.5 6.9 62 35-109 6-67 (73)
106 KOG2002 TPR-containing nuclear 97.2 0.0037 8E-08 70.9 13.1 135 42-190 629-765 (1018)
107 KOG1174 Anaphase-promoting com 97.2 0.007 1.5E-07 63.6 14.1 187 36-226 244-510 (564)
108 KOG1127 TPR repeat-containing 97.2 0.0059 1.3E-07 69.6 14.5 150 41-215 474-658 (1238)
109 PRK10747 putative protoheme IX 97.2 0.03 6.5E-07 58.5 19.1 170 33-233 162-373 (398)
110 KOG1156 N-terminal acetyltrans 97.2 0.0044 9.5E-08 67.8 12.5 104 85-190 21-124 (700)
111 PRK10803 tol-pal system protei 97.2 0.0082 1.8E-07 59.8 13.7 94 35-142 154-253 (263)
112 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0017 3.7E-08 68.9 9.2 70 54-136 70-142 (453)
113 COG4783 Putative Zn-dependent 97.1 0.056 1.2E-06 57.8 19.9 155 56-224 303-462 (484)
114 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.002 4.3E-08 68.4 8.5 70 100-171 70-142 (453)
115 TIGR00540 hemY_coli hemY prote 97.0 0.027 5.9E-07 59.0 16.4 115 85-214 277-397 (409)
116 PF14559 TPR_19: Tetratricopep 96.9 0.0028 6E-08 48.6 6.2 63 35-110 2-64 (68)
117 KOG1128 Uncharacterized conser 96.9 0.012 2.7E-07 65.2 13.2 157 43-214 442-614 (777)
118 KOG1127 TPR repeat-containing 96.9 0.016 3.4E-07 66.3 13.8 141 31-186 9-165 (1238)
119 PF12895 Apc3: Anaphase-promot 96.8 0.0034 7.3E-08 50.7 6.4 67 121-189 4-72 (84)
120 PF13371 TPR_9: Tetratricopept 96.8 0.0041 8.8E-08 48.4 6.6 56 86-142 10-65 (73)
121 KOG1173 Anaphase-promoting com 96.8 0.076 1.7E-06 57.7 18.0 137 35-186 255-391 (611)
122 KOG0543 FKBP-type peptidyl-pro 96.6 0.021 4.6E-07 59.7 12.0 73 20-105 253-325 (397)
123 PRK10747 putative protoheme IX 96.6 0.38 8.3E-06 50.3 21.7 188 33-234 127-341 (398)
124 KOG2376 Signal recognition par 96.6 0.072 1.6E-06 58.2 16.2 130 26-177 14-146 (652)
125 KOG0543 FKBP-type peptidyl-pro 96.6 0.085 1.8E-06 55.3 16.1 94 110-216 262-355 (397)
126 KOG2003 TPR repeat-containing 96.5 0.046 1E-06 58.1 13.5 180 31-234 426-605 (840)
127 COG0457 NrfG FOG: TPR repeat [ 96.5 0.45 9.9E-06 40.6 18.5 156 37-219 108-268 (291)
128 PF06552 TOM20_plant: Plant sp 96.5 0.019 4.1E-07 54.4 9.5 102 122-224 7-117 (186)
129 KOG4234 TPR repeat-containing 96.5 0.014 3.1E-07 56.3 8.8 70 121-191 110-184 (271)
130 PRK10803 tol-pal system protei 96.4 0.046 1E-06 54.5 12.4 106 105-223 142-253 (263)
131 KOG1128 Uncharacterized conser 96.4 0.035 7.5E-07 61.8 12.3 119 37-170 498-616 (777)
132 PF09295 ChAPs: ChAPs (Chs5p-A 96.3 0.098 2.1E-06 55.3 15.0 107 38-162 183-289 (395)
133 KOG0495 HAT repeat protein [RN 96.2 0.26 5.6E-06 54.7 17.6 186 33-233 593-799 (913)
134 COG0457 NrfG FOG: TPR repeat [ 96.2 0.66 1.4E-05 39.6 20.0 170 36-232 71-247 (291)
135 PF06552 TOM20_plant: Plant sp 96.2 0.025 5.4E-07 53.5 8.8 73 42-116 8-80 (186)
136 KOG2003 TPR repeat-containing 96.2 0.21 4.6E-06 53.3 16.3 168 37-231 503-704 (840)
137 PF14559 TPR_19: Tetratricopep 96.1 0.019 4.1E-07 43.9 6.4 58 85-143 5-62 (68)
138 PRK15331 chaperone protein Sic 96.1 0.1 2.3E-06 48.7 12.1 81 87-169 53-133 (165)
139 KOG1129 TPR repeat-containing 96.0 0.1 2.2E-06 53.8 12.4 168 41-234 272-442 (478)
140 COG4235 Cytochrome c biogenesi 95.9 0.3 6.5E-06 49.5 15.1 124 85-221 136-261 (287)
141 COG5010 TadD Flp pilus assembl 95.7 0.89 1.9E-05 45.3 17.3 134 43-190 84-217 (257)
142 COG4235 Cytochrome c biogenesi 95.6 0.31 6.7E-06 49.3 14.2 121 42-175 139-261 (287)
143 COG5010 TadD Flp pilus assembl 95.6 0.88 1.9E-05 45.4 17.1 164 43-233 51-214 (257)
144 PF09976 TPR_21: Tetratricopep 95.4 1 2.3E-05 40.0 15.6 127 26-168 13-145 (145)
145 PF12688 TPR_5: Tetratrico pep 95.3 0.33 7.2E-06 42.9 11.8 96 106-215 2-103 (120)
146 PF09295 ChAPs: ChAPs (Chs5p-A 95.0 0.42 9.1E-06 50.6 13.5 110 85-211 183-292 (395)
147 COG4785 NlpI Lipoprotein NlpI, 95.0 0.057 1.2E-06 52.9 6.3 84 90-175 84-167 (297)
148 PF00515 TPR_1: Tetratricopept 94.8 0.059 1.3E-06 35.9 4.3 33 106-139 2-34 (34)
149 PF13431 TPR_17: Tetratricopep 94.7 0.029 6.3E-07 38.4 2.6 28 163-190 1-28 (34)
150 PF13431 TPR_17: Tetratricopep 94.4 0.043 9.4E-07 37.6 3.0 25 94-118 2-26 (34)
151 KOG0376 Serine-threonine phosp 94.4 0.056 1.2E-06 57.7 5.1 124 85-227 18-141 (476)
152 KOG1174 Anaphase-promoting com 94.3 1.6 3.5E-05 46.5 15.4 180 29-222 165-369 (564)
153 PF13525 YfiO: Outer membrane 94.2 2 4.4E-05 40.6 14.9 106 26-144 7-128 (203)
154 PRK15331 chaperone protein Sic 94.1 2.6 5.7E-05 39.4 15.0 99 22-134 35-133 (165)
155 PF07719 TPR_2: Tetratricopept 94.1 0.14 3E-06 33.7 4.9 33 106-139 2-34 (34)
156 PF00515 TPR_1: Tetratricopept 94.1 0.085 1.8E-06 35.1 3.9 33 176-220 2-34 (34)
157 PF12569 NARP1: NMDA receptor- 94.0 2 4.3E-05 47.1 16.4 72 102-175 189-262 (517)
158 PF04184 ST7: ST7 protein; In 93.9 1.7 3.7E-05 47.1 15.0 183 29-233 173-386 (539)
159 PF07719 TPR_2: Tetratricopept 93.9 0.14 2.9E-06 33.8 4.5 33 176-220 2-34 (34)
160 KOG2376 Signal recognition par 93.9 0.61 1.3E-05 51.2 11.7 129 85-232 26-154 (652)
161 KOG4648 Uncharacterized conser 93.8 0.27 5.8E-06 51.1 8.4 103 36-156 109-211 (536)
162 KOG4555 TPR repeat-containing 93.6 1.3 2.8E-05 40.6 11.5 93 32-138 51-147 (175)
163 KOG1308 Hsp70-interacting prot 92.9 0.11 2.5E-06 53.5 4.3 98 26-137 116-213 (377)
164 KOG1840 Kinesin light chain [C 92.9 3.6 7.8E-05 45.0 15.9 157 33-216 208-396 (508)
165 COG4785 NlpI Lipoprotein NlpI, 92.7 1.4 3E-05 43.5 11.1 78 111-190 71-148 (297)
166 PF12688 TPR_5: Tetratrico pep 92.2 4.3 9.3E-05 35.9 12.8 96 60-169 2-103 (120)
167 KOG0376 Serine-threonine phosp 92.0 0.2 4.3E-06 53.7 4.8 71 121-192 19-89 (476)
168 PF13428 TPR_14: Tetratricopep 91.9 0.32 6.9E-06 34.7 4.4 40 177-228 3-42 (44)
169 KOG1129 TPR repeat-containing 91.9 1.1 2.5E-05 46.4 9.8 159 36-221 302-463 (478)
170 PF09976 TPR_21: Tetratricopep 91.8 3.7 8E-05 36.4 12.1 113 87-214 27-145 (145)
171 PF13424 TPR_12: Tetratricopep 91.2 0.5 1.1E-05 37.1 5.3 68 56-136 2-76 (78)
172 KOG4648 Uncharacterized conser 91.1 0.76 1.6E-05 47.9 7.7 88 85-174 111-198 (536)
173 PF13428 TPR_14: Tetratricopep 90.8 0.58 1.3E-05 33.3 4.8 38 107-145 3-40 (44)
174 PRK10866 outer membrane biogen 90.3 19 0.00042 35.3 17.9 101 29-142 37-160 (243)
175 KOG2053 Mitochondrial inherita 89.9 11 0.00023 43.6 15.9 97 85-184 23-119 (932)
176 PF13181 TPR_8: Tetratricopept 89.7 0.72 1.6E-05 30.4 4.3 33 106-139 2-34 (34)
177 PF08424 NRDE-2: NRDE-2, neces 89.6 13 0.00028 38.0 15.3 110 46-156 6-116 (321)
178 PRK10941 hypothetical protein; 89.1 2.9 6.3E-05 42.0 9.9 68 34-114 191-258 (269)
179 PF04733 Coatomer_E: Coatomer 89.1 4.3 9.2E-05 41.1 11.2 88 86-174 182-269 (290)
180 KOG4555 TPR repeat-containing 89.0 6 0.00013 36.3 10.8 70 120-190 57-130 (175)
181 PLN03218 maturation of RBCL 1; 89.0 37 0.00079 40.7 20.3 14 203-216 770-783 (1060)
182 PLN03218 maturation of RBCL 1; 88.9 46 0.001 39.8 21.0 82 86-170 594-678 (1060)
183 PLN03077 Protein ECB2; Provisi 88.6 24 0.00051 40.6 18.2 167 36-236 536-706 (857)
184 PF13512 TPR_18: Tetratricopep 88.1 8.8 0.00019 35.1 11.4 82 26-117 12-96 (142)
185 PLN03077 Protein ECB2; Provisi 87.5 19 0.0004 41.5 16.5 137 36-190 566-706 (857)
186 PF08424 NRDE-2: NRDE-2, neces 86.6 13 0.00029 37.9 13.2 92 89-181 3-105 (321)
187 PF13424 TPR_12: Tetratricopep 86.5 1.1 2.4E-05 35.0 4.2 66 103-170 3-75 (78)
188 PF13205 Big_5: Bacterial Ig-l 86.5 4.8 0.0001 33.4 8.3 80 279-371 23-106 (107)
189 KOG2053 Mitochondrial inherita 86.4 3.7 8.1E-05 47.2 9.6 88 120-220 23-110 (932)
190 COG3071 HemY Uncharacterized e 85.8 52 0.0011 34.9 19.9 175 30-237 159-377 (400)
191 KOG4642 Chaperone-dependent E3 85.7 3.6 7.7E-05 41.1 8.0 80 42-134 27-106 (284)
192 KOG3824 Huntingtin interacting 85.6 2.4 5.1E-05 43.8 6.9 76 27-115 119-194 (472)
193 PF13525 YfiO: Outer membrane 85.5 19 0.00041 34.0 12.9 102 120-223 19-126 (203)
194 PLN03081 pentatricopeptide (PP 85.2 37 0.0008 38.1 17.0 45 121-169 375-419 (697)
195 KOG2396 HAT (Half-A-TPR) repea 85.0 31 0.00067 37.8 15.2 124 8-144 48-178 (568)
196 PLN03081 pentatricopeptide (PP 84.4 40 0.00087 37.8 16.8 166 38-236 374-543 (697)
197 KOG1310 WD40 repeat protein [G 83.8 4.5 9.8E-05 44.4 8.4 109 102-223 365-481 (758)
198 PF04733 Coatomer_E: Coatomer 82.2 12 0.00026 37.9 10.4 100 27-138 169-268 (290)
199 PRK10866 outer membrane biogen 82.2 29 0.00063 34.1 12.9 118 104-223 31-160 (243)
200 PF13181 TPR_8: Tetratricopept 82.1 1.9 4.2E-05 28.2 3.3 33 141-174 2-34 (34)
201 PF14863 Alkyl_sulf_dimr: Alky 81.9 5.3 0.00011 36.4 7.0 49 25-74 71-119 (141)
202 KOG4642 Chaperone-dependent E3 81.5 6.3 0.00014 39.4 7.8 81 85-167 24-104 (284)
203 PF13512 TPR_18: Tetratricopep 80.3 15 0.00034 33.5 9.4 70 33-107 56-135 (142)
204 KOG2796 Uncharacterized conser 79.4 34 0.00075 34.9 12.2 126 36-175 189-320 (366)
205 KOG2610 Uncharacterized conser 78.9 68 0.0015 33.8 14.5 107 36-156 115-225 (491)
206 COG1729 Uncharacterized protei 78.1 21 0.00046 35.9 10.4 102 27-142 144-251 (262)
207 KOG1840 Kinesin light chain [C 77.7 52 0.0011 36.2 14.2 127 30-171 247-397 (508)
208 COG2956 Predicted N-acetylgluc 77.7 97 0.0021 32.5 18.0 51 86-137 195-245 (389)
209 COG2956 Predicted N-acetylgluc 77.7 97 0.0021 32.5 18.4 90 86-176 156-249 (389)
210 PF04184 ST7: ST7 protein; In 77.6 23 0.0005 38.8 11.1 130 86-234 183-342 (539)
211 PF05843 Suf: Suppressor of fo 77.5 80 0.0017 31.5 15.2 130 86-226 16-146 (280)
212 PRK10941 hypothetical protein; 77.0 16 0.00034 36.8 9.3 60 120-180 195-254 (269)
213 KOG2396 HAT (Half-A-TPR) repea 76.7 16 0.00035 39.9 9.7 62 36-109 117-178 (568)
214 smart00028 TPR Tetratricopepti 76.0 7.5 0.00016 23.0 4.5 33 176-220 2-34 (34)
215 KOG0551 Hsp90 co-chaperone CNS 75.6 12 0.00025 39.2 7.9 91 86-178 96-190 (390)
216 COG2912 Uncharacterized conser 75.4 18 0.00039 36.5 9.1 89 15-115 171-259 (269)
217 PF05843 Suf: Suppressor of fo 75.3 52 0.0011 32.8 12.5 122 42-176 18-142 (280)
218 PF04781 DUF627: Protein of un 74.1 27 0.00059 30.7 8.8 100 33-135 5-107 (111)
219 KOG1308 Hsp70-interacting prot 74.1 2.6 5.7E-05 43.8 2.9 103 64-178 117-220 (377)
220 COG3071 HemY Uncharacterized e 73.6 1.3E+02 0.0027 32.2 15.0 79 87-168 310-388 (400)
221 PF03704 BTAD: Bacterial trans 72.9 49 0.0011 28.9 10.6 53 33-98 71-123 (146)
222 PF14853 Fis1_TPR_C: Fis1 C-te 69.6 19 0.00041 27.3 6.0 42 30-72 7-48 (53)
223 smart00028 TPR Tetratricopepti 69.1 8.9 0.00019 22.6 3.6 31 107-138 3-33 (34)
224 KOG1310 WD40 repeat protein [G 61.8 21 0.00046 39.4 6.8 91 85-176 388-480 (758)
225 KOG4340 Uncharacterized conser 61.4 1.1E+02 0.0023 32.0 11.3 152 34-216 20-173 (459)
226 PF13174 TPR_6: Tetratricopept 60.5 16 0.00034 23.3 3.7 31 107-138 2-32 (33)
227 PF13174 TPR_6: Tetratricopept 60.0 25 0.00054 22.3 4.6 32 61-104 2-33 (33)
228 COG5191 Uncharacterized conser 59.2 36 0.00078 35.5 7.5 102 47-170 95-196 (435)
229 KOG0551 Hsp90 co-chaperone CNS 58.8 59 0.0013 34.1 9.0 53 85-138 133-185 (390)
230 PF13226 DUF4034: Domain of un 56.5 77 0.0017 32.2 9.4 68 89-156 61-149 (277)
231 PF13176 TPR_7: Tetratricopept 54.9 21 0.00046 24.1 3.6 32 177-220 1-34 (36)
232 PF14853 Fis1_TPR_C: Fis1 C-te 54.5 46 0.001 25.2 5.7 24 121-144 16-39 (53)
233 PF15297 CKAP2_C: Cytoskeleton 54.2 1.1E+02 0.0024 32.1 10.2 75 17-103 95-172 (353)
234 PF13281 DUF4071: Domain of un 54.2 2.9E+02 0.0064 29.3 15.3 178 29-231 146-345 (374)
235 PF02259 FAT: FAT domain; Int 53.0 99 0.0021 30.7 9.7 78 25-103 255-341 (352)
236 KOG3824 Huntingtin interacting 47.6 34 0.00074 35.6 5.2 63 86-149 131-193 (472)
237 COG5191 Uncharacterized conser 46.7 34 0.00074 35.6 5.1 59 38-109 121-180 (435)
238 PF02259 FAT: FAT domain; Int 46.4 3E+02 0.0066 27.2 19.3 62 158-219 275-341 (352)
239 KOG0545 Aryl-hydrocarbon recep 45.5 1.3E+02 0.0028 30.6 8.7 55 159-225 248-302 (329)
240 KOG1915 Cell cycle control pro 45.4 4.7E+02 0.01 29.1 16.7 125 37-178 86-210 (677)
241 PF12583 TPPII_N: Tripeptidyl 45.2 38 0.00083 30.8 4.6 51 11-65 66-116 (139)
242 KOG2047 mRNA splicing factor [ 45.1 3E+02 0.0064 31.6 12.2 162 45-229 335-592 (835)
243 PRK04841 transcriptional regul 44.8 5.3E+02 0.012 29.5 15.8 121 35-170 463-602 (903)
244 KOG3785 Uncharacterized conser 44.8 1.9E+02 0.0041 30.9 10.1 116 36-153 69-232 (557)
245 KOG2610 Uncharacterized conser 40.6 2.8E+02 0.006 29.5 10.5 103 86-190 118-224 (491)
246 KOG3785 Uncharacterized conser 39.2 5.2E+02 0.011 27.8 16.3 87 36-142 34-123 (557)
247 KOG1070 rRNA processing protei 38.2 9.2E+02 0.02 30.4 16.1 158 13-184 1515-1678(1710)
248 PRK10301 hypothetical protein; 35.9 2.8E+02 0.006 24.6 8.7 23 280-303 47-69 (124)
249 KOG2796 Uncharacterized conser 35.5 5.2E+02 0.011 26.7 18.9 130 86-229 192-331 (366)
250 PF14561 TPR_20: Tetratricopep 34.0 1.5E+02 0.0033 24.6 6.3 50 159-220 6-55 (90)
251 PF13176 TPR_7: Tetratricopept 34.0 55 0.0012 22.0 3.1 25 108-133 2-26 (36)
252 COG3914 Spy Predicted O-linked 32.8 4.6E+02 0.0099 29.6 11.2 89 42-142 84-178 (620)
253 KOG0545 Aryl-hydrocarbon recep 30.8 2.2E+02 0.0047 29.0 7.7 62 29-103 235-296 (329)
254 COG4976 Predicted methyltransf 30.7 1.3E+02 0.0029 30.2 6.2 70 159-240 13-82 (287)
255 smart00386 HAT HAT (Half-A-TPR 30.6 1.2E+02 0.0025 18.7 4.2 26 42-67 4-29 (33)
256 PF14938 SNAP: Soluble NSF att 30.3 1.9E+02 0.0042 28.6 7.5 139 85-231 49-200 (282)
257 PF03704 BTAD: Bacterial trans 30.2 3.6E+02 0.0078 23.3 13.4 46 120-166 76-121 (146)
258 COG2912 Uncharacterized conser 27.1 3.2E+02 0.0069 27.7 8.3 65 121-186 196-260 (269)
259 PF04781 DUF627: Protein of un 25.9 2.7E+02 0.0059 24.5 6.7 65 159-224 14-81 (111)
260 COG1729 Uncharacterized protei 25.2 5.9E+02 0.013 25.7 9.8 92 120-224 155-252 (262)
261 PF14561 TPR_20: Tetratricopep 24.4 3E+02 0.0064 22.8 6.5 50 43-104 6-55 (90)
262 COG4976 Predicted methyltransf 23.4 1.4E+02 0.0031 30.0 4.9 71 35-118 6-76 (287)
263 PRK13184 pknD serine/threonine 22.4 1.4E+03 0.03 27.4 13.7 132 85-225 489-629 (932)
264 COG3914 Spy Predicted O-linked 21.7 1.1E+03 0.023 26.8 11.7 117 45-174 51-175 (620)
265 PRK13184 pknD serine/threonine 21.4 1.3E+03 0.028 27.7 13.0 107 39-153 490-599 (932)
266 PF08481 GBS_Bsp-like: GBS Bsp 21.3 1.8E+02 0.0039 24.5 4.6 77 274-354 8-84 (95)
267 COG3118 Thioredoxin domain-con 20.1 9.8E+02 0.021 24.8 12.2 124 28-171 138-266 (304)
268 KOG1915 Cell cycle control pro 20.1 1.2E+03 0.027 26.0 15.5 148 48-224 62-210 (677)
No 1
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-58 Score=463.19 Aligned_cols=359 Identities=41% Similarity=0.684 Sum_probs=297.2
Q ss_pred CCCCcCC-CCChHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC
Q 013048 1 MHGRPRK-PLKPEDAAASA---AKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (450)
Q Consensus 1 mhgr~~~-~~~~e~~~~~~---~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~ 76 (450)
||||+|+ ++++|.+++.+ +++..|+.++++|..+++.|+|+.++|.++.++|..||++|++||||+.++.......
T Consensus 1 Mhg~~kv~~~eee~~~k~~~~~~k~~~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~ 80 (421)
T KOG0529|consen 1 MHGRLKVKTTEEEKEAKLKERAFKAGQLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA 80 (421)
T ss_pred CCcccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh
Confidence 9999999 66777777544 4778888999999999999999999999999999999999999999999999887433
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS-IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 77 ~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~-~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
+.+|....+.+++||.++..||+.|||+|.+||||+|+|.+...+ +..||.+|+++|+.||||||||+||+||+....+
T Consensus 81 ~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 81 QLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 456666678999999999999999999999999999999987644 8999999999999999999999999999999988
Q ss_pred C---hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 156 S---EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 156 ~---~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
. ..+||+||+++|..||+||||||||..+|+.+.+....|..-..+.+..|++.+++|+++||+|+|+|+|++|||+
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 7 7899999999999999999999999999999998776663223456799999999999999999999999999999
Q ss_pred ccccCCCCcccccCCCCCCcceecCCccccCCCCCCcccccCCCCccceEEeeccccccccccceEEecccCcCccceee
Q 013048 233 QTVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTNKDLVWK 312 (450)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~w~ 312 (450)
+.++.+ |..++. + .+++.++.+|.+.+|-+.+.||.+ ++.++.. -
T Consensus 241 ~~~~~~---------------------~~~~S~-s---~~ls~~~~~p~~~~l~~e~~~v~~---~i~~E~~-------~ 285 (421)
T KOG0529|consen 241 RGMRRE---------------------CYIVSH-S---ALLSESFSEPLIKYLRSEIGLVQS---TIGSEFE-------T 285 (421)
T ss_pred cccccc---------------------cccccc-c---cccccccCCccHHHHHHHhhhhhh---hhhhhcc-------c
Confidence 987765 222211 1 446778899999999999999864 3334431 1
Q ss_pred eCCCCCCccceeEEEeccCCCCCCCCCccccEEEecCcccccccCCCcccCCCcceEEEEEEeecccccccccccceeec
Q 013048 313 PLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISSSGFHYSNPFCFAFRVSLQFVETQPVEALGKEIISW 392 (450)
Q Consensus 313 ~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (450)
|++..+ |.|+.+. +|..|++ |.+|+.+.+..+.+ .++|
T Consensus 286 ~~d~~g------w~~~~~~-----------------------------n~~s~~~---~~~v~~~~e~~~~~----~~~~ 323 (421)
T KOG0529|consen 286 PIDKRG------WLCESLV-----------------------------NLESPYE---TKRVHLTVEDQQFG----IVSW 323 (421)
T ss_pred cccccC------chhcccc-----------------------------chhhhhh---cccccccccccccc----cccc
Confidence 333222 7777553 5677777 55666666545555 8999
Q ss_pred cCCCccccc-cccCCCCCccccccccccCCCCcchhhhhHHHHHHHHHHHHhhhh
Q 013048 393 RDESFHNYN-AHSQDSSPISSLYQLSIKNDNELTDFEWRAATIAKEIDHFRELLS 446 (450)
Q Consensus 393 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (450)
++ +++.|. +...+.+++- .++.+...|..++|..++++++-+||
T Consensus 324 ~~-~~e~~~~~~~~~l~~~~---------~~e~~~~a~lqe~ie~c~~l~~~~P~ 368 (421)
T KOG0529|consen 324 VA-SNEQWLHALLDDLDSLD---------CNEETRRAWLQEQIESCVELQELLPD 368 (421)
T ss_pred hh-hhhhhHHHHhhhccccc---------hhhhccHHHHHHHHHHHHHHHhhCCc
Confidence 98 788887 5555555533 37889999999999999999999886
No 2
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=333.14 Aligned_cols=207 Identities=28% Similarity=0.518 Sum_probs=192.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhH
Q 013048 8 PLKPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSIL 87 (450)
Q Consensus 8 ~~~~e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~ 87 (450)
...+|.|+++|+|+++||+++++|++.+..+++|++||++++.+|.+||.+||+|+||+.+|.+++. .+
T Consensus 26 qdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-----------dL 94 (318)
T KOG0530|consen 26 QDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-----------DL 94 (318)
T ss_pred CCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-----------HH
Confidence 4678899999999999999999999999999999999999999999999999999999999999973 68
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHH
Q 013048 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSID-NELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (450)
Q Consensus 88 ~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~-eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk 166 (450)
.+||++.+.++..|||||++||||++++..++ ... +||+++..+|..|.||||||+||.|+++.++.++ +||+|+++
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~-~EL~y~~~ 172 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE-DELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH-HHHHHHHH
Confidence 99999999999999999999999999999886 555 9999999999999999999999999999999985 89999999
Q ss_pred HHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 167 MICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 167 ~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
+|+.|..|+|||+||.+++.+-. |..+ ...+++|+.+..+.|.+.|+|+|+|+|+++++..
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~-----~~~~-~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTK-----GVIS-KAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHhhhccchhheeeEEEEecc-----CCcc-HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 99999999999999999987642 1211 2457999999999999999999999999999987
No 3
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=4.6e-39 Score=325.44 Aligned_cols=208 Identities=27% Similarity=0.491 Sum_probs=189.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHH
Q 013048 9 LKPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILD 88 (450)
Q Consensus 9 ~~~e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~ 88 (450)
..++.++.+++|.++|+.++++|++.+..++++++||++++++|.+||++||+|++|+.+|..++. .++
T Consensus 21 ~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-----------~l~ 89 (320)
T PLN02789 21 DDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-----------DLE 89 (320)
T ss_pred CCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-----------hHH
Confidence 344569999999999999999999999999999999999999999999999999999999999862 489
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHH
Q 013048 89 EELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (450)
Q Consensus 89 eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~-~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~ 167 (450)
+||.++++++..|||+|++|+||+|++.+++. .+++|++++++++++||+|||||+||+|++..++.+. +||++|+++
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~-eeL~~~~~~ 168 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE-DELEYCHQL 168 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Confidence 99999999999999999999999999998863 2478999999999999999999999999999999986 899999999
Q ss_pred HHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 168 ICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 168 I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
|+.||+|+|||+||++++.+++.. .....++++|++++.++|.++|+|+|+|+|+++++..
T Consensus 169 I~~d~~N~sAW~~R~~vl~~~~~l-----~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 169 LEEDVRNNSAWNQRYFVITRSPLL-----GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHCCCchhHHHHHHHHHHhcccc-----ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 999999999999999999887420 1122356889999999999999999999999999976
No 4
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=301.43 Aligned_cols=226 Identities=34% Similarity=0.592 Sum_probs=193.5
Q ss_pred CCCCcCC-C----CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcC
Q 013048 1 MHGRPRK-P----LKPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTE 75 (450)
Q Consensus 1 mhgr~~~-~----~~~e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~ 75 (450)
|||-.|+ + ..-+.+.+++.|.+.|+.+++.|++++...+|+.+||+++..+|..||++|++||||+.++.+...
T Consensus 3 ~~~~~r~~~~~~q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~- 81 (328)
T COG5536 3 DLDLRRVKPLPIQFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQM- 81 (328)
T ss_pred cccchhccccccchhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhh-
Confidence 6776666 3 233457888889999999999999999999999999999999999999999999999999999432
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcC
Q 013048 76 NDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (450)
Q Consensus 76 ~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~ 154 (450)
.+ +.....++.||.+++.+++.|||+|+.||||+|+|.... +.+.+|+..++++|+.|+||||+|+||+|++....
T Consensus 82 -~s--edk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie 158 (328)
T COG5536 82 -VS--EDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIE 158 (328)
T ss_pred -hc--ccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecch
Confidence 11 112346899999999999999999999999999999763 46899999999999999999999999999995532
Q ss_pred c-----ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 013048 155 R-----SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (450)
Q Consensus 155 ~-----~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~ 229 (450)
. ...+|++++..+|+.|++|+||||||-.++..+.. .|-...++.+++||+++.++++++|+|+|+|.|+||
T Consensus 159 ~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~---~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 159 DLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN---RGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred hhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh---hcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 2 23589999999999999999999999888777664 221223346899999999999999999999999999
Q ss_pred HHcc
Q 013048 230 LLDQ 233 (450)
Q Consensus 230 LL~~ 233 (450)
+.+.
T Consensus 236 ~~~~ 239 (328)
T COG5536 236 VSSE 239 (328)
T ss_pred Hhcc
Confidence 9976
No 5
>PLN02789 farnesyltranstransferase
Probab=99.94 E-value=8.7e-26 Score=228.76 Aligned_cols=176 Identities=26% Similarity=0.385 Sum_probs=148.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~k 117 (450)
|..-+++|++++++|..||++|++|++|++++.+++. ..+.+|+.+++++|..|||||+||+||+|++.+
T Consensus 85 ~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 85 DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4333899999999999999999999999999998863 135789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc---CcC---hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NRS---EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 118 l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L---~~~---~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
++ .+++||++|+++|+.||+|++||+||++++.++ +.. .++|++|++++|..+|+|+|||+|++.++.....
T Consensus 155 l~-~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~- 232 (320)
T PLN02789 155 LG-GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE- 232 (320)
T ss_pred hh-hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-
Confidence 95 899999999999999999999999999999887 322 2579999999999999999999999999987321
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
++ -...++++++.+++..+|+..-+-.++.-++.
T Consensus 233 ---~l----~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 233 ---AL----VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred ---cc----ccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 00 11345778888888888887766655444443
No 6
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-23 Score=213.04 Aligned_cols=137 Identities=27% Similarity=0.522 Sum_probs=124.2
Q ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 013048 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (450)
Q Consensus 41 seeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~ 120 (450)
.++.|.+...+|..||+.|.+||+|+++|++... ..+..||.+|+++|+.||+||++|+||+||+.+...
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~----------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH----------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 3678999999999999999999999999998863 258999999999999999999999999999997653
Q ss_pred C---hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc-----------ChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 121 S---IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR-----------SEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 121 ~---~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~-----------~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
. -.+|+++|+++|..+++|||||+||.+++..+-. ....||+++..++-.||.|+|+|+|+.|+|.
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 3 5799999999999999999999999999996621 1358999999999999999999999999998
Q ss_pred H
Q 013048 187 N 187 (450)
Q Consensus 187 ~ 187 (450)
+
T Consensus 241 ~ 241 (421)
T KOG0529|consen 241 R 241 (421)
T ss_pred c
Confidence 7
No 7
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.1e-22 Score=194.35 Aligned_cols=158 Identities=23% Similarity=0.456 Sum_probs=140.1
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 013048 57 ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (450)
Q Consensus 57 d~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d 136 (450)
++-.+.-|-|-++..... -.++|.+++.+|..||-||++|+||+-+|..+...+.+||++++.+++-+
T Consensus 41 ~fr~~m~YfRAI~~~~E~------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n 108 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEK------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN 108 (318)
T ss_pred hHHHHHHHHHHHHhcccc------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 344455555555554432 36899999999999999999999999999999878899999999999999
Q ss_pred CCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 013048 137 SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (450)
Q Consensus 137 pkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~ 216 (450)
||||+.|+||+++++.++.+.-.||++|..+|..|.+||.||.||.|+++..+. ++.||.+++..|+.
T Consensus 109 pKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~------------~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 109 PKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD------------YEDELAYADELLEE 176 (318)
T ss_pred ccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh------------HHHHHHHHHHHHHH
Confidence 999999999999999999876589999999999999999999999999998753 89999999999999
Q ss_pred CCCCcchHHHHHHHHcccccCC
Q 013048 217 DPDDQSGWFYHLWLLDQTVRVD 238 (450)
Q Consensus 217 dP~deSaW~Y~r~LL~~~~~~~ 238 (450)
|--|.|||+++.+++..+.+..
T Consensus 177 Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 177 DIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred hhhccchhheeeEEEEeccCCc
Confidence 9999999999999998765544
No 8
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=163.26 Aligned_cols=139 Identities=23% Similarity=0.371 Sum_probs=120.1
Q ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 013048 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (450)
Q Consensus 39 eyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl 118 (450)
.|-+..|+..+.++.-||++|++||||+++|..... ..+..|+.++.++|..+|+||++|+||+|++...
T Consensus 88 ~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~----------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~i 157 (328)
T COG5536 88 HLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK----------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTI 157 (328)
T ss_pred hhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC----------cccchhHHHHHHHhcccccccceeeeEeeeeecc
Confidence 344677999999999999999999999999988753 3589999999999999999999999999999542
Q ss_pred C-----CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc---Cc-----ChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 013048 119 H-----SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NR-----SEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (450)
Q Consensus 119 ~-----~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L---~~-----~~eeELe~~dk~I~~npsNySAW~yR~~LL 185 (450)
. +.+.+|+++...+|.-|+.|++||+||-..+..+ |. +.++||++...++-.+|.|.|+|.|..+++
T Consensus 158 e~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 158 EDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred hhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 2 4678999999999999999999999994444332 21 246899999999999999999999999998
Q ss_pred HH
Q 013048 186 SN 187 (450)
Q Consensus 186 ~~ 187 (450)
..
T Consensus 238 ~~ 239 (328)
T COG5536 238 SE 239 (328)
T ss_pred cc
Confidence 77
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.43 E-value=1e-11 Score=135.51 Aligned_cols=162 Identities=13% Similarity=0.002 Sum_probs=146.9
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|.+ ++|+..+.++|.++|++..+|..++.++..++ .+++++..+++++..+|++..+|++++.++
T Consensus 343 ~~g~~-~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g------------~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 343 LKGKH-LEALADLSKSIELDPRVTQSYIKRASMNLELG------------DPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred HcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46888 89999999999999999999999999988876 489999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g 195 (450)
...+ .+++++.+++++++++|.|..+|..++.++..+|.++ +++..+++++..+|.+..+|++.+.++..+++
T Consensus 410 ~~~g-~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~-eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~----- 482 (615)
T TIGR00990 410 FIKG-EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA-SSMATFRRCKKNFPEAPDVYNYYGELLLDQNK----- 482 (615)
T ss_pred HHcC-CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-----
Confidence 8884 8999999999999999999999999999999999986 89999999999999999999999999888764
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
++++++++.+|+.++|++...+
T Consensus 483 -------~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 483 -------FDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred -------HHHHHHHHHHHHhcCCcccccc
Confidence 7999999999999999865544
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.43 E-value=9.7e-12 Score=135.74 Aligned_cols=174 Identities=14% Similarity=-0.017 Sum_probs=159.3
Q ss_pred hcCCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLET---NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~---NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
..+.| ++|+..++++|.. .|+...+|+.++.+...++ .+++++..+++++..+|++..+|..++
T Consensus 306 ~~~~y-~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g------------~~~eA~~~~~kal~l~P~~~~~~~~la 372 (615)
T TIGR00990 306 ADESY-EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG------------KHLEALADLSKSIELDPRVTQSYIKRA 372 (615)
T ss_pred hhhhH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 34567 7999999999987 4888999999999988876 489999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
+++..++ .+++++..++++++.+|.+..+|.+++.+...+|.+. +++.+++++++.+|.+..+|.+++.++..++.
T Consensus 373 ~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~-- 448 (615)
T TIGR00990 373 SMNLELG-DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA-QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS-- 448 (615)
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--
Confidence 9999884 8999999999999999999999999999999999996 89999999999999999999999999988765
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
+++++..+.+++..+|++..+|+++..++.....
T Consensus 449 ----------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 449 ----------IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred ----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 7999999999999999999999998888876543
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.30 E-value=5e-11 Score=107.37 Aligned_cols=126 Identities=10% Similarity=-0.071 Sum_probs=116.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 013048 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (450)
Q Consensus 46 ~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eE 125 (450)
.+++++|.++|++ +..++.++...+ .+++++.++..++..+|.++.+|..++-++..++ .++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A 77 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEG------------DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK-EYTTA 77 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-hHHHH
Confidence 4689999999997 556888888776 4899999999999999999999999999999884 99999
Q ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 013048 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (450)
Q Consensus 126 L~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L 188 (450)
+.+|++++..+|.+..+|.+++.++..+|.+. ++++.++++|..+|.|..+|..|+.+...+
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~-eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPG-LAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999996 899999999999999999999999987765
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=5.3e-10 Score=121.13 Aligned_cols=178 Identities=9% Similarity=-0.028 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
++|+.++.+++.++|++..+|...+.+...+...-..++ ...+.+++..+++++..+|++..+|..++.++...+ .
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~---~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-~ 353 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDK---QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-E 353 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCccc---chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-C
Confidence 689999999999999999999988877655532101111 235799999999999999999999999999888774 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhc
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ 201 (450)
+++++..++++++++|.+..+|.+.+.++...|.++ +++..++++++.+|.+..++.++..++..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~-eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~----------- 421 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLE-EALQTINECLKLDPTRAAAGITKLWITYYHTG----------- 421 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCCCChhhHHHHHHHHHhccC-----------
Confidence 999999999999999999999999999999999986 79999999999999998776666665544432
Q ss_pred hHHHHHHHHHHHHHhC-CCCcchHHHHHHHHccccc
Q 013048 202 VLPDEYEFVHQAIFTD-PDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 202 ileeELe~v~~AI~~d-P~deSaW~Y~r~LL~~~~~ 236 (450)
++++++.+.+++..+ |++..++.++..++....+
T Consensus 422 -~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 422 -IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred -HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 688999999999875 7777778777777655433
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=8.4e-11 Score=105.91 Aligned_cols=125 Identities=8% Similarity=-0.091 Sum_probs=114.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
..+++++..+|.+ +.++++++... +.+++++.+|.+++..+|.+..+|..++.++..+|.+. +++.++.+++..+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQE-GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT-TAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcC
Confidence 5789999999986 66789999888 49999999999999999999999999999999999996 8999999999999
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 172 psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
|.+..+|++++.++..+++ ++++++.++.++..+|++...|..+...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE------------PGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999876 7999999999999999999999777665543
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=6.8e-09 Score=94.79 Aligned_cols=174 Identities=13% Similarity=0.048 Sum_probs=149.7
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR 111 (450)
......|.+ ++|++.+.+++..+|++..+|..++.+....+ .+++++..+++++..+|++..+|...
T Consensus 39 ~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 39 LGYLEQGDL-EVAKENLDKALEHDPDDYLAYLALALYYQQLG------------ELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 344567888 89999999999999999999999999988876 47999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhC--CCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKAD--SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~d--pkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
+.++...+ .++++++.+.+++... +....+|...+.+....+.+. ++.+++++++..+|.+..+|...+.++...+
T Consensus 106 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQG-KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD-KAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcc-cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 99998874 8999999999999853 566778888899988889886 7999999999999999999988888877765
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 190 KRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 190 ~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
. +++++..+.+++...|.+...|.....+..
T Consensus 184 ~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (234)
T TIGR02521 184 Q------------YKDARAYLERYQQTYNQTAESLWLGIRIAR 214 (234)
T ss_pred C------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 689999999999998888777755444443
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=1.7e-09 Score=117.28 Aligned_cols=163 Identities=12% Similarity=-0.035 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
++|+..+.++|.++|++..+|..++.++...+ .+++++..+++++..+|.+..+|++.+.++...+ .
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G-~ 387 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHS------------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG-Q 387 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-C
Confidence 79999999999999999999999999888776 4899999999999999999999999999999884 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc-cCChhHHHHHHHHHHHhhhhhccCccchh
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN-FSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n-psNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (450)
+++++..++++++++|.+..++.++..++...+.++ ++++.+.+++..+ |.+..++.+.+.++..+++
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~e-eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~---------- 456 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGID-DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK---------- 456 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHH-HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC----------
Confidence 999999999999999998877777777777788874 8999999999886 7777888889988887775
Q ss_pred chHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 013048 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (450)
Q Consensus 201 ~ileeELe~v~~AI~~dP~deSaW~Y~r~L 230 (450)
++++.+.+.++....|++..++....-.
T Consensus 457 --~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 457 --HELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred --HHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 6889999988888888777777544433
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=1.6e-09 Score=108.56 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=95.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
...|.+ ++|+..+.++|.++|++..+|+.++.++..++ .+++++..++++++.+|++..+|..|+.+
T Consensus 75 ~~~g~~-~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 75 DSLGLR-ALARNDFSQALALRPDMADAYNYLGIYLTQAG------------NFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred HHCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356777 79999999999999999999999999999887 48999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChh--hhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFH--AWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyh--AW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
+...+ .++++++.++++++++|.+.. .|.+ +....+.+ +++++.+.+.+...
T Consensus 142 l~~~g-~~~eA~~~~~~al~~~P~~~~~~~~~~---l~~~~~~~-~~A~~~l~~~~~~~ 195 (296)
T PRK11189 142 LYYGG-RYELAQDDLLAFYQDDPNDPYRALWLY---LAESKLDP-KQAKENLKQRYEKL 195 (296)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHccCCH-HHHHHHHHHHHhhC
Confidence 98874 999999999999999999863 3322 12222333 25666665555443
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=3.4e-09 Score=106.19 Aligned_cols=120 Identities=12% Similarity=-0.026 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 013048 42 KEAVELSTKLLETNP---E-LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (450)
Q Consensus 42 eeAL~lt~~~L~~NP---d-~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~k 117 (450)
+.++..+.++|..+| + ...+|+.|+.++..++. +.+++..+++++..+|+++.+|++++.++..
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL------------RALARNDFSQALALRPDMADAYNYLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 678889999996444 3 36889999999988873 7899999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 118 l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
.+ .++++++.++++++++|.+..+|..++.++...|+++ ++++.+++++..+|.|.
T Consensus 111 ~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~-eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 111 AG-NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE-LAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCH
Confidence 85 9999999999999999999999999999999999996 89999999999999996
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.12 E-value=7.9e-10 Score=118.30 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=161.6
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
.|.+ ++||.+|..+|++.|++..||...+.+|...++ ...+..+|..+|++||..|.+-.+-+-++.
T Consensus 129 rg~~-~~al~~y~~aiel~p~fida~inla~al~~~~~------------~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 129 RGQL-QDALALYRAAIELKPKFIDAYINLAAALVTQGD------------LELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred hchH-HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC------------CcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 4777 899999999999999999999999999988864 578889999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc---
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV--- 193 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~--- 193 (450)
.. +++.++-++|-++++.+|...-||+.-+-++..-|..+ .+|+.+++++++||.--.|+.+.|.+++.++....
T Consensus 196 a~-Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~-~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AE-GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIW-LAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hh-cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHH-HHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 87 48999999999999999999999999999999888876 79999999999999999999999999998875421
Q ss_pred -----cCcc--------------chhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 194 -----EGFV--------------SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 194 -----~g~~--------------~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
...+ -.+..++-+|++|++||.++|+-+.+++.+...|.-.
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 0000 1245678999999999999999999999988877543
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.07 E-value=1.3e-08 Score=111.01 Aligned_cols=185 Identities=15% Similarity=0.034 Sum_probs=102.8
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch--------------
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS-------------- 82 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~-------------- 82 (450)
+.........+|.| ++|+..+.+++.++|++..+|..++.++...++.+.+ .|+.
T Consensus 25 ~~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (899)
T TIGR02917 25 LIEAAKSYLQKNKY-KAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103 (899)
T ss_pred HHHHHHHHHHcCCh-HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHC
Confidence 44444555678999 8999999999999999999999999998887742210 1100
Q ss_pred ---------------------------------hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 83 ---------------------------------LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLL 129 (450)
Q Consensus 83 ---------------------------------~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~ 129 (450)
..+.+++++..+++++..+|++..+|....+++...+ .++++++.+
T Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~ 182 (899)
T TIGR02917 104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-RFDEARALI 182 (899)
T ss_pred CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC-CHHHHHHHH
Confidence 0023444444555555555555555554444444442 445555555
Q ss_pred HHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHH
Q 013048 130 DKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF 209 (450)
Q Consensus 130 ~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~ 209 (450)
+++++.+|.+..+|..++.+....|.+. ++++++.+++..+|.+..+|..++.++...+. ++++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~------------~~~A~~~ 249 (899)
T TIGR02917 183 DEVLTADPGNVDALLLKGDLLLSLGNIE-LALAAYRKAIALRPNNPAVLLALATILIEAGE------------FEEAEKH 249 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHH
Confidence 5555555555555555555444444443 45555555555555555555444444433322 4555555
Q ss_pred HHHHHHhCCCCcchHHH
Q 013048 210 VHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 210 v~~AI~~dP~deSaW~Y 226 (450)
++.++..+|++..++++
T Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (899)
T TIGR02917 250 ADALLKKAPNSPLAHYL 266 (899)
T ss_pred HHHHHHhCCCCchHHHH
Confidence 55555555555444433
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.06 E-value=5.3e-09 Score=112.12 Aligned_cols=169 Identities=16% Similarity=0.087 Sum_probs=137.3
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|.- .||.++|.++|.++|.+..+-|.-+.+....+. ++++..++.++|..+|....+-++-..++
T Consensus 332 d~G~V-~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~------------~e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 332 DKGSV-TEAVDCYNKALRLCPNHADAMNNLGNIYREQGK------------IEEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred hccch-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc------------chHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 34666 577777777777777777777777777766653 67888888888888888888888888888
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g 195 (450)
++- +.+++++.+|+.+|.++|....|.++++-.+..+|... .++++++++|..||--..|..+.+.+.+.-+.
T Consensus 399 kqq-gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~-~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn----- 471 (966)
T KOG4626|consen 399 KQQ-GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS-AAIQCYTRAIQINPTFAEAHSNLASIYKDSGN----- 471 (966)
T ss_pred Hhc-ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH-HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC-----
Confidence 876 37888888888888888888888888888888888886 78888888888888888888888777665443
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
+.++|..|..|+.++|+-..+...+...+
T Consensus 472 -------i~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 472 -------IPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred -------cHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 58999999999999999999988766655
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=6.5e-10 Score=119.62 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
+.|++++.+++.++|.+.-|+---|-=+. ....++.++.++..+|..+|.+|.||+.-+.+..+.. .
T Consensus 438 ~~Aik~f~RAiQldp~faYayTLlGhE~~------------~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe-k 504 (638)
T KOG1126|consen 438 DTAIKCFKRAIQLDPRFAYAYTLLGHESI------------ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE-K 504 (638)
T ss_pred HHHHHHHHHhhccCCccchhhhhcCChhh------------hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc-h
Confidence 45666666666666654333221111000 1245899999999999999999999999999998874 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhc
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ 201 (450)
++.+.-.+.++++++|+|----.|-+.++..++..+ ++|+++++++..||.|.-.=++|+.+|..+++
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d-~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~----------- 572 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD-KALQLYEKAIHLDPKNPLCKYHRASILFSLGR----------- 572 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh-HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc-----------
Confidence 888999999999999999999999999999999986 89999999999999999999999999999886
Q ss_pred hHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccccCCCCcccccC
Q 013048 202 VLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQLVSSW 246 (450)
Q Consensus 202 ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~~~~~~~~~~~ 246 (450)
+.+|+..+++.-.+-|++.++.+-.+-...+..+....+.=-+|
T Consensus 573 -~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 573 -YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred -hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 68888888888888899888885555555555444434433334
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=1.2e-08 Score=117.46 Aligned_cols=162 Identities=7% Similarity=-0.087 Sum_probs=134.0
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
.+.|.+ ++|+.++.+++..+|++..+.......+..+ ..+.+++..+++++..+|. ..+|...+.+
T Consensus 553 l~~Gd~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~------------Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~ 618 (987)
T PRK09782 553 QAAGNG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIP------------GQPELALNDLTRSLNIAPS-ANAYVARATI 618 (987)
T ss_pred HHCCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 345555 5666666666666666654444322222222 3589999999999999996 9999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhcc
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~ 194 (450)
+.+++ .+++++.++.+++..+|.|..++...+.++...|.+. ++++.+.++++.+|.+..+|.+++.++..+++
T Consensus 619 l~~lG-~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e-eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---- 692 (987)
T PRK09782 619 YRQRH-NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA-QSREMLERAHKGLPDDPALIRQLAYVNQRLDD---- 692 (987)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----
Confidence 99884 9999999999999999999999999999999999985 89999999999999999999999999998876
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 195 g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
++++++++++++.++|++...=
T Consensus 693 --------~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 693 --------MAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred --------HHHHHHHHHHHHhcCCCCchhh
Confidence 7999999999999999876544
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.04 E-value=1.1e-08 Score=113.25 Aligned_cols=174 Identities=9% Similarity=-0.110 Sum_probs=139.1
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
....|.+ ++|+..+.+++..+|++..+++..+.++...+..+ ....+++..+++++..+|.+..+|...+.
T Consensus 222 l~~~g~~-~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~--------eA~~~A~~~~~~Al~l~P~~~~a~~~lg~ 292 (656)
T PRK15174 222 LCAVGKY-QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR--------EAKLQAAEHWRHALQFNSDNVRIVTLYAD 292 (656)
T ss_pred HHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch--------hhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3457888 78999999999999999999999999988887410 01235899999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~ 193 (450)
++...+ .+++++..+++++..+|.+..++.+.+.++...|.++ ++++.+++++..+|.+..++.+++.++..+++...
T Consensus 293 ~l~~~g-~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~-eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 293 ALIRTG-QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT-AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 999884 8999999999999999999999999999999999996 89999999999999987666667777777765321
Q ss_pred c----------CccchhchHHHHHHHHHHHHHhCC
Q 013048 194 E----------GFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 194 ~----------g~~~~~~ileeELe~v~~AI~~dP 218 (450)
. ......+.+.+++..+.+++..-+
T Consensus 371 A~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 371 AESVFEHYIQARASHLPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcC
Confidence 0 011123345666666666665543
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=2.1e-09 Score=115.78 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=144.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
...+| +.|+..|.++|..+|.||-||+.-|.+..+.+ .++.+.-.+.+|+.+||.|...-.|-+.++
T Consensus 467 ~~ee~-d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe------------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 467 ATEEF-DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE------------KLEFAEFHFQKAVEINPSNSVILCHIGRIQ 533 (638)
T ss_pred hhHHH-HhHHHHHHhhhcCCchhhHHHHhhhhheeccc------------hhhHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence 44667 79999999999999999999999999988876 389999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g 195 (450)
.+++ ..+++|.++++|+.+||+|.++=.+|+.++..++++. ++|.-.+++-+.-|.+.+..+-.+.+...++.
T Consensus 534 ~~~k-~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~-eal~~LEeLk~~vP~es~v~~llgki~k~~~~----- 606 (638)
T KOG1126|consen 534 HQLK-RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV-EALQELEELKELVPQESSVFALLGKIYKRLGN----- 606 (638)
T ss_pred HHhh-hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH-HHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc-----
Confidence 9985 8899999999999999999999999999999999996 79999999999999999999999999988875
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
...++.-+--|..+||.-.
T Consensus 607 -------~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 607 -------TDLALLHFSWALDLDPKGA 625 (638)
T ss_pred -------chHHHHhhHHHhcCCCccc
Confidence 3667777788888888643
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.02 E-value=3.1e-08 Score=109.77 Aligned_cols=189 Identities=9% Similarity=-0.052 Sum_probs=122.3
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch--------------------
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS-------------------- 82 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~-------------------- 82 (450)
.....|.+ ++|++.+.+++.++|++..+|..++.++...++.+.+ .|+.
T Consensus 119 ~l~~~g~~-~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQY-ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Confidence 33456777 7788888888888888888888777776666542210 1100
Q ss_pred --------------------------hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHH----HHHHHHHH
Q 013048 83 --------------------------LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDN----ELRLLDKF 132 (450)
Q Consensus 83 --------------------------~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~e----EL~~~~k~ 132 (450)
....+++++..+++++..+|.+..+++..+.++...+ .+++ ++..++++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG-RSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHH
Confidence 0133455566666666666666666666666666553 4443 56677777
Q ss_pred HHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHH
Q 013048 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQ 212 (450)
Q Consensus 133 L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~ 212 (450)
++.+|.+..+|...+.++...+.+. +++.++++++..+|.+..++.+.+.++..+++ ++++++.+.+
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~-eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~------------~~eA~~~l~~ 343 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNE-KAIPLLQQSLATHPDLPYVRAMYARALRQVGQ------------YTAASDEFVQ 343 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHH
Confidence 7777777777777777776666664 56677777777777777777666666665543 6889999999
Q ss_pred HHHhCCCCcchHHHHHHHHccccc
Q 013048 213 AIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 213 AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++..+|++...+.+...++....+
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCC
Confidence 999999877544444445544433
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.02 E-value=3.9e-08 Score=107.38 Aligned_cols=140 Identities=12% Similarity=-0.052 Sum_probs=109.6
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
...|.+ ++|+..+.+++..+|++..+|.....++...+ .+++++..+++++..+|.+..+|..++.+
T Consensus 136 ~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 136 LGLGQL-ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN------------RFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred HHcCCH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 356777 78888888888888888888888888777665 37888888888888888888888888877
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
....+ .+++++..++++++.+|.+..+|..++.++...|.++ ++...++++++.+|.+..++..++.+....+
T Consensus 203 ~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
T TIGR02917 203 LLSLG-NIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE-EAEKHADALLKKAPNSPLAHYLKALVDFQKK 275 (899)
T ss_pred HHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 77763 7888888888888888888888888888887777775 6777778888877777777777766655444
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.91 E-value=8.8e-08 Score=112.29 Aligned_cols=183 Identities=15% Similarity=0.048 Sum_probs=140.4
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHH--HHH-
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA--WHH- 110 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~A--W~h- 110 (450)
....|.+ ++|+..+.++|.++|++..+|...+.++...+ .+++++..+++++..+|++..+ |..
T Consensus 279 ~~~~g~~-~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g------------~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 279 AVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQG------------DRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 4467888 89999999999999999999999999998886 4899999999999999987642 311
Q ss_pred ----H-------HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHH
Q 013048 111 ----R-------KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (450)
Q Consensus 111 ----R-------~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~ 179 (450)
+ +.+..+. +.++++++++++++.++|.+..++...+.++...+.+. +++++++++++.+|.|..++.
T Consensus 346 l~~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~-eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA-AAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHH
Confidence 1 2222333 48999999999999999999999999999999999986 899999999999999999998
Q ss_pred HHHHHHHHhhhhhccC------------c------------------cchhchHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 013048 180 NRSLLLSNLLKRKVEG------------F------------------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (450)
Q Consensus 180 yR~~LL~~L~~~~~~g------------~------------------~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~ 229 (450)
..+.++......+... . -.....++++++.+.+++..+|++..+++.+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7776653211000000 0 001234577788888888888877766655544
Q ss_pred HH
Q 013048 230 LL 231 (450)
Q Consensus 230 LL 231 (450)
++
T Consensus 504 ~~ 505 (1157)
T PRK11447 504 DL 505 (1157)
T ss_pred HH
Confidence 44
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.89 E-value=9.9e-08 Score=109.97 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=140.5
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|.+ ++|+..+.++|.++|+ ..+|...+.++..++. +++++.++++++..+|++..+++..++++
T Consensus 588 ~~Gr~-~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~------------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 588 IPGQP-ELALNDLTRSLNIAPS-ANAYVARATIYRQRHN------------VPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred hCCCH-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45888 8999999999999997 9999999999999874 89999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g 195 (450)
...+ .++++++.++++++.+|.+..+|.++++++..+|.+. +++.++++++..+|++...-.-.+.++..-.
T Consensus 654 ~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~------ 725 (987)
T PRK09782 654 WDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDDIDNQALITPLTPEQNQQRF------ 725 (987)
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCCCCchhhhhhhHHHHHHH------
Confidence 9884 8999999999999999999999999999999999996 8999999999999999876666666655432
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCC
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.++++.+.+.++...+|.-
T Consensus 726 ------~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 726 ------NFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred ------HHHHHHHHHHHHhhcCccc
Confidence 3688889999999888853
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.81 E-value=1.3e-07 Score=82.11 Aligned_cols=126 Identities=10% Similarity=-0.044 Sum_probs=112.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 013048 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (450)
Q Consensus 47 lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL 126 (450)
++.++|..+|++..+-..++..+...+ .+.+++..++.++..+|.+..+|..++.++...+ .+++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~ 71 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQG------------RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK-EYEEAI 71 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH-HHHHHH
Confidence 578999999999998888888877775 4899999999999999999999999999998874 889999
Q ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 127 RLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 127 ~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
..++++++.+|.+...|.+++.+....+.+. +++++++++++.+|.+...+-.+..+..
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEPE-SALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999886 8999999999999999887766655433
No 30
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=1.8e-07 Score=88.95 Aligned_cols=126 Identities=9% Similarity=0.027 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH-HHcCcC-hHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA-ASMNRS-EEDELK 162 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl-~~L~~~-~eeELe 162 (450)
...++.+..+..+|..+|++..+|...+.++..++ .+++++..+++++.++|+|..++...+.++ ...+.. ..++.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g-~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN-DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 35688999999999999999999999999998884 999999999999999999999999999875 566764 358999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
.++++++.+|+|..+++..+.....+++ +++++.++.+++..+|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~------------~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD------------YAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999998875 799999999999999987743
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=6.1e-07 Score=85.51 Aligned_cols=169 Identities=11% Similarity=-0.076 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh
Q 013048 24 LRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (450)
Q Consensus 24 ~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~y---tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~ 100 (450)
...++..-......|.| ++|+..+.+++..+|++. .+|...+.++...+ .+++++..++.+++.
T Consensus 33 ~~~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~------------~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDY-TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG------------DYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHH
Confidence 33445555666788999 799999999999999876 58888999888876 489999999999999
Q ss_pred CCCChH---HHHHHHHHHHhCC-------CChHHHHHHHHHHHHhCCCChhhhhHH-----------------HHHHHHc
Q 013048 101 NFKSYG---AWHHRKWILSKGH-------SSIDNELRLLDKFQKADSRNFHAWNYR-----------------RFVAASM 153 (450)
Q Consensus 101 nPKny~---AW~hR~wvL~kl~-------~~~~eEL~~~~k~L~~dpkNyhAW~yR-----------------~~vl~~L 153 (450)
+|++.. +|+.++.+..... +.++++++.+++++..+|.+-.+|.-. +.+....
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999987 7988888887641 257889999999999999997775222 2233344
Q ss_pred CcChHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 154 NRSEEDELKYTEDMICNNFSN---YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 154 ~~~~eeELe~~dk~I~~npsN---ySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
|.+. +++..+.+++...|++ ..+|..++.++..++. +++++++++......|
T Consensus 180 g~~~-~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~------------~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 180 GAYV-AAINRFETVVENYPDTPATEEALARLVEAYLKLGL------------KDLAQDAAAVLGANYP 234 (235)
T ss_pred CChH-HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCC
Confidence 6665 7999999999997764 5799999999998875 6888888777666555
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.78 E-value=6e-07 Score=105.36 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=57.2
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
....|++ ++|+..+.++|.++|++..++.....++...++ +++++..+++++..+|.+..+++-+..
T Consensus 471 ~~~~g~~-~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~------------~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 471 LENQGKW-AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ------------RSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3467888 899999999999999999999999999988873 788888888888888888877765544
Q ss_pred HH
Q 013048 114 IL 115 (450)
Q Consensus 114 vL 115 (450)
++
T Consensus 538 ~l 539 (1157)
T PRK11447 538 YL 539 (1157)
T ss_pred HH
Confidence 43
No 33
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=1.9e-07 Score=81.09 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=113.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
..+++++..+|++..+-..+...+...+ .+++++..+++++..+|.|..+|...+.++...+.+. +++.++++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE-EAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 3577899999999988888888887774 8999999999999999999999999999999999886 7999999999999
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 172 psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
|.+...|++++.++..+++ +++++..+..++..+|++...+.+++.+..
T Consensus 82 p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGE------------PESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999888764 799999999999999999998877766543
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.76 E-value=2.2e-06 Score=78.14 Aligned_cols=157 Identities=10% Similarity=-0.020 Sum_probs=129.5
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC--CCChHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN--FKSYGAWHHR 111 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n--PKny~AW~hR 111 (450)
....|++ ++|++.+.+++..+|++..+|...+.++...+ .+++++..+++++... |....+|...
T Consensus 75 ~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 75 YQQLGEL-EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG------------KYEQAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred HHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3456888 79999999999999999999999999888776 4899999999999753 5677888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
+.++... +.++++..++++++..+|.+..+|...+.+....+.+. ++++++++++...|.+...+.....+....+.
T Consensus 142 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (234)
T TIGR02521 142 GLCALKA-GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK-DARAYLERYQQTYNQTAESLWLGIRIARALGD- 218 (234)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-
Confidence 8888877 48999999999999999999999999999999999886 79999999999988888888766666655543
Q ss_pred hccCccchhchHHHHHHHHHHHHHhC
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTD 217 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~d 217 (450)
.+++..+...+....
T Consensus 219 -----------~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 219 -----------VAAAQRYGAQLQKLF 233 (234)
T ss_pred -----------HHHHHHHHHHHHhhC
Confidence 355555555554443
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.76 E-value=2.4e-07 Score=88.05 Aligned_cols=125 Identities=11% Similarity=0.045 Sum_probs=112.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-H
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL-S 116 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL-~ 116 (450)
+++ ++++..+.++|..+|++..+|...+.++..++ .+++++..+++++..+|++..++....-++ .
T Consensus 53 ~~~-~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g------------~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 53 QTP-EAQLQALQDKIRANPQNSEQWALLGEYYLWRN------------DYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred hhH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444 78899999999999999999999999999887 489999999999999999999999999876 4
Q ss_pred hCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChh
Q 013048 117 KGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (450)
Q Consensus 117 kl~~-~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNyS 176 (450)
..+. .++++.+.++++++.+|+|..++...+......|.+. +++.+++++++.+|.+.+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~-~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA-QAIELWQKVLDLNSPRVN 179 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCcc
Confidence 4432 2589999999999999999999999999999999996 899999999999988763
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.76 E-value=1.2e-06 Score=89.12 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=126.0
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC---------Ccch-----------------hhhhH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS---------DPDS-----------------LKSIL 87 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~---------dpe~-----------------~~~~~ 87 (450)
.+..|.+ ++|+..+.+++..+|++..+|...+.++...+..+.+ .|+. ..+.+
T Consensus 45 ~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQP-DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCCh-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3567888 7899999999999999999999998888776642110 1100 01456
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh-----hhhHHHHHHHHcCcChHHHHH
Q 013048 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH-----AWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 88 ~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh-----AW~yR~~vl~~L~~~~eeELe 162 (450)
++++.++++++..+|.+..++.....++.+. +.++++++.+.++++.+|.+.. .+...+.++...+.+. ++++
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD-AARA 201 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH-HHHH
Confidence 7777777777777777777777777776665 3777788888887777776543 2223344444556664 6777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc-chHHHHHHHHcc
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ-SGWFYHLWLLDQ 233 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de-SaW~Y~r~LL~~ 233 (450)
+++++++.+|.+..++...+.++...++ ++++++.+.+++..+|.+. .++.....++..
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGD------------YAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 8888888888777777777766665543 6788888888888877663 334333333333
No 37
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=3.4e-07 Score=102.05 Aligned_cols=120 Identities=6% Similarity=-0.081 Sum_probs=65.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
.|.| ++|+.+++.++.+.|++..|+..+..+|.+++ .+++++..++++|..+|+|+.+-+++..+|.
T Consensus 99 ~g~~-~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~------------~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 99 AHRS-DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ------------GIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred cCCc-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc------------cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 3444 45555555555555555555555555555554 2455555555555555555555555555555
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
+++ .+++++++|++++..+|.+..+|.-++.++..+|..+ ++...+.++|...
T Consensus 166 ~~g-~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~-~A~~~~~~a~~~~ 218 (694)
T PRK15179 166 EIG-QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW-RARDVLQAGLDAI 218 (694)
T ss_pred Hhc-chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhh
Confidence 552 5555555555555555555555555555555555553 4555555555443
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.6e-07 Score=98.72 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=136.2
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC----------CCCcchhh------------hhHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN----------DSDPDSLK------------SILDEE 90 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~----------~~dpe~~~------------~~~~eE 90 (450)
..+++|.. .+|.=+++.++..+|+|..||.+-|.+-...+.+. ..||++.. +.=.++
T Consensus 294 ~lm~nG~L-~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDL-SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCc-hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 45577887 68888999999999999999999998766665310 02333210 111233
Q ss_pred HHHHHHHHHhCCCChHHH------------------HHHH---H---------------------HHHhCCCChHHHHHH
Q 013048 91 LRVVESALRQNFKSYGAW------------------HHRK---W---------------------ILSKGHSSIDNELRL 128 (450)
Q Consensus 91 L~~~e~aL~~nPKny~AW------------------~hR~---w---------------------vL~kl~~~~~eEL~~ 128 (450)
++++++=|+.+||-+..= +++. . ||..+.+.|++++.|
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 344444443333221100 0000 0 000011247899999
Q ss_pred HHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHH
Q 013048 129 LDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYE 208 (450)
Q Consensus 129 ~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe 208 (450)
|+.+|..+|.||..|+--|-.+..-.+.. ++++.|.+++++-|.-..+|++.+....+|+. |+++++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~-EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~------------ykEA~~ 519 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSE-EAISAYNRALQLQPGYVRVRYNLGISCMNLGA------------YKEAVK 519 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccH-HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh------------HHHHHH
Confidence 99999999999999999999999888885 89999999999999999999999999999985 899999
Q ss_pred HHHHHHHhCCC----C------cchHHHHHHHHccccc
Q 013048 209 FVHQAIFTDPD----D------QSGWFYHLWLLDQTVR 236 (450)
Q Consensus 209 ~v~~AI~~dP~----d------eSaW~Y~r~LL~~~~~ 236 (450)
.+..||.+.+. . +.+|.++|-.|....+
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 99999988876 2 3489999976655444
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=5.1e-07 Score=100.71 Aligned_cols=137 Identities=11% Similarity=-0.049 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
.++|.-......-.|++..+...-+.+.++++. +++++..++.++...|++..|+.++.-+|.+.. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-~ 135 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHR------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-G 135 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-c
Confidence 445554445556789999999999999999984 799999999999999999999999999999985 9
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
+++++..+++++..+|.|..+-..++.++..+|.++ ++++.|++++..+|.+..+|.-++.+|+.++...
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~-~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE-QADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999996 8999999999999999999999999999998753
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.74 E-value=1.6e-06 Score=88.05 Aligned_cols=126 Identities=14% Similarity=0.003 Sum_probs=69.4
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH-----HH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG-----AW 108 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~-----AW 108 (450)
....|.+ ++|+..+.+++..+|.+..+++....++...++ +++++..++.++..+|.+.. .+
T Consensus 117 ~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 117 YLKAGLL-DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD------------WQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred HHHCCCH-HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch------------HHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3456777 788888888888888888888887777766653 44555555555554444322 11
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC
Q 013048 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (450)
Q Consensus 109 ~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN 174 (450)
...+-++.+. +.+++++.+++++++.+|.+..++...+.++...+.+. ++++.+++++..+|.+
T Consensus 184 ~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 184 CELAQQALAR-GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYA-AAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHChhh
Confidence 1122222222 24455555555555555555555555544444444443 4555555555544444
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.8e-07 Score=93.25 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
++|...+..+|.+||+...||---|.=...+. .-..++..+..|+.+||++|.||+.-|....-+. -
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK------------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-M 413 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK------------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-M 413 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc------------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-c
Confidence 79999999999999999999998887777775 2578999999999999999999999999988774 4
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
..-+|=++.++++..|.+--.|.--|-+..++++.+ +++.|++++|...--|-++..+.+.+..+|..
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~-eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLE-EAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999996 89999999999888889999999999999876
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.64 E-value=5.5e-07 Score=92.88 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=69.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
.......|.| ++|+.++.++|.++|++..+|..|+.++..++ .+.+++..++++|..+|++..+|+.
T Consensus 9 a~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g------------~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 9 AKEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANIKLG------------NFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3444556666 67777777777777777777777777766665 3667777777777777777777776
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v 149 (450)
++.++..+ +.+++++..++++++++|.|..+......+
T Consensus 76 lg~~~~~l-g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 76 KGTACMKL-EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666 366777777777777777666554443333
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.6e-06 Score=87.58 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=123.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 83 LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 83 ~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
+.+..++++.++.++|+.||+...||.--|.-.-.+. .-..+++.|.++++++|++|.||.--|....-|+-+. =+|=
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK-Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~-YaLy 419 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK-NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF-YALY 419 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc-ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH-HHHH
Confidence 3477899999999999999999999998877776674 6678999999999999999999999999999988775 6899
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
|+.+++..-|.|.-.|.-.|.+..+|.+ +++++.||.+|+...--+.++..++.-|...+
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~------------~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNR------------LEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhcc------------HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 79999999999988777778887877777654
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=8e-07 Score=93.66 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=135.9
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
.|.+ ..+...++++|.++|.+...+.+|..++..... -.+=..+++++..+||.|+.++|||+.+..
T Consensus 339 ~g~~-~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~------------~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 339 KGDS-LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ------------SEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred cCCc-hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc------------cHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 3555 578889999999999999998888888776642 255568999999999999999999999888
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~ 196 (450)
-+ ..|+++++-|++++.++|.|..+.-..++++-+.+... +.+..+.+++++-|+-....++-+.+|.--.
T Consensus 406 lL-~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~-~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq------- 476 (606)
T KOG0547|consen 406 LL-QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA-ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ------- 476 (606)
T ss_pred HH-HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCchHHHHHHHHHhhHH-------
Confidence 77 48999999999999999999999999999998888875 7888999999999999999988888876432
Q ss_pred cchhchHHHHHHHHHHHHHhCCC
Q 013048 197 VSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 197 ~~~~~ileeELe~v~~AI~~dP~ 219 (450)
.+..+++.|+.||.+.|.
T Consensus 477 -----qFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 477 -----QFDKAVKQYDKAIELEPR 494 (606)
T ss_pred -----hHHHHHHHHHHHHhhccc
Confidence 379999999999999998
No 45
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=5e-07 Score=90.37 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHH
Q 013048 17 SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVES 96 (450)
Q Consensus 17 ~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~ 96 (450)
.+++++++|.==+. .+..+.| ++|++.|+++|.++|.+...+-.|.-++.+|+. +..+++-|+.
T Consensus 77 ~~~~AE~LK~eGN~---~m~~~~Y-~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~------------~~~AVkDce~ 140 (304)
T KOG0553|consen 77 DKALAESLKNEGNK---LMKNKDY-QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE------------YEDAVKDCES 140 (304)
T ss_pred HHHHHHHHHHHHHH---HHHhhhH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc------------hHHHHHHHHH
Confidence 44555555543333 3356788 888888888888888888888888888888873 7888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 97 ALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 97 aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
+|.+||....+|---+.++.-+ +.+.++++.|.|+|++||.|-..|.+..++=..++.
T Consensus 141 Al~iDp~yskay~RLG~A~~~~-gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLAL-GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHcc-CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888887666666666 478888888888888888888888888887777654
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1e-06 Score=92.82 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=153.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
..+-+++..+.+.++..+||++..+++||+.+..-++ .+++++.-+++++.++|.+.-+....+.++-
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~------------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ------------QYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH------------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 3444588899999999999999999999999887775 5899999999999999999999999999998
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC------ChhHHHHHHHHHHHhhh
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS------NYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps------NySAW~yR~~LL~~L~~ 190 (450)
+.+ .+++.+..++.+.+.-|+...+.++-+-+|..-+.++ .+++.|+.+|+..|. |.-...|++.++.+..
T Consensus 440 r~~-k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd-~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk- 516 (606)
T KOG0547|consen 440 RQH-KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD-KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK- 516 (606)
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH-HHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-
Confidence 875 8899999999999999999999999999999888887 899999999999999 9999999988877633
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++ +.+++.++.+||++||.-+-+.-=+..+..|..+
T Consensus 517 ---------~d-~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 517 ---------ED-INQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred ---------hh-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 22 5889999999999999988887666665555433
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.59 E-value=8.5e-07 Score=87.26 Aligned_cols=142 Identities=21% Similarity=0.162 Sum_probs=114.4
Q ss_pred HhhcCCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETN--PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~N--Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR 111 (450)
....|.+ +++..+.+++.... |.+...|..++.+..+.|. .++++.+++++|..+|++..++..-
T Consensus 120 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~------------~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 120 YYRLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD------------PDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp HHHTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455666 78888888877655 7889999999999998873 7999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
.|++...+ ..++..+.+....+..|.|...|..-+++...+|.+. +++.++.++++.+|.|.....+-+.++...+.
T Consensus 187 ~~~li~~~-~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~-~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 187 AWLLIDMG-DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE-EALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH-HHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred HHHHHHCC-ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc-cccccccccccccccccccccccccccccccc
Confidence 99998764 6777788888888888999999999999999999986 89999999999999999999999999988876
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.56 E-value=9.7e-07 Score=86.83 Aligned_cols=187 Identities=18% Similarity=0.150 Sum_probs=108.9
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC------------CCcch---------hhhhHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND------------SDPDS---------LKSILDEELRVVE 95 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~------------~dpe~---------~~~~~~eEL~~~e 95 (450)
.|.+ ++|+..+++++..++........-..++ ..+.... .+|.. ....+++...+++
T Consensus 57 ~~~~-~~A~~ay~~l~~~~~~~~~~~~~l~~l~-~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDY-DEAIEAYEKLLASDKANPQDYERLIQLL-QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccc-cccccccccccccccccccccccccccc-ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 4555 6777777777777777655543333321 1111111 01111 1245677777777
Q ss_pred HHHHhC--CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC
Q 013048 96 SALRQN--FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (450)
Q Consensus 96 ~aL~~n--PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps 173 (450)
.+.... +.+...|.+++.+..+.+ ..+++++++.++++.+|.|..++..-.|++-..|... +..+.+..+....|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~-~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD-EAREALKRLLKAAPD 212 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH-HHHHHHHHHHHH-HT
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH-HHHHHHHHHHHHCcC
Confidence 766544 788999999999999884 8899999999999999999999999999987777764 456677777777799
Q ss_pred ChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccccCCC
Q 013048 174 NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDS 239 (450)
Q Consensus 174 NySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~~~~ 239 (450)
|...|...+.++..+++ +++++..+.+++..+|+|.........+|.+....+.
T Consensus 213 ~~~~~~~la~~~~~lg~------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGR------------YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp SCCHCHHHHHHHHHHT-------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHhccccc------------ccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999886 7999999999999999999999888888888766553
No 49
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.56 E-value=7.7e-08 Score=64.78 Aligned_cols=29 Identities=38% Similarity=0.881 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 013048 89 EELRVVESALRQNFKSYGAWHHRKWILSK 117 (450)
Q Consensus 89 eEL~~~e~aL~~nPKny~AW~hR~wvL~k 117 (450)
+||+++..+|..+||||++|+||+|++++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 35566666666666666666666666554
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.55 E-value=4.6e-06 Score=94.09 Aligned_cols=181 Identities=8% Similarity=-0.055 Sum_probs=139.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhhhcCCC----------CCcch----------------h
Q 013048 33 HNHHNHIYSKEAVELSTKLLETN---PELYTAWNYRKLAVQHKLTEND----------SDPDS----------------L 83 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~N---Pd~ytAWn~Rr~iL~~l~~~~~----------~dpe~----------------~ 83 (450)
.....|.+ ++|+..+++++..+ |++..+|. +.++..+++.+. .+|.. .
T Consensus 246 ~Ll~~g~~-~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 246 ALLARDRY-KDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHhhhH-HHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34556777 78888888888875 55555553 333333332111 11110 0
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 013048 84 KSILDEELRVVESALRQNFKS---------------YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (450)
Q Consensus 84 ~~~~~eEL~~~e~aL~~nPKn---------------y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~ 148 (450)
...+++++..++.++..+|+. ..+...+..++... +.++++++.+++++...|.|..+|..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 256899999999999998853 23555566666666 48999999999999999999999999999
Q ss_pred HHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHH
Q 013048 149 VAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (450)
Q Consensus 149 vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r 228 (450)
++...+.+. ++++.+++++..+|.|..++..++.+...++. ++++...+++++..+|++..+-.+.+
T Consensus 402 l~~~~g~~~-~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~------------~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 402 VLQARGWPR-AAENELKKAEVLEPRNINLEVEQAWTALDLQE------------WRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHhcCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999986 89999999999999999999999998777654 79999999999999999998887766
Q ss_pred HH
Q 013048 229 WL 230 (450)
Q Consensus 229 ~L 230 (450)
-+
T Consensus 469 ~~ 470 (765)
T PRK10049 469 AR 470 (765)
T ss_pred HH
Confidence 55
No 51
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.55 E-value=9.6e-08 Score=64.33 Aligned_cols=30 Identities=37% Similarity=0.804 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCChhhhhHHHHHHHHc
Q 013048 124 NELRLLDKFQKADSRNFHAWNYRRFVAASM 153 (450)
Q Consensus 124 eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L 153 (450)
+||+++.+++..+|+||+||+||+|+++.+
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 366666666666666666666666666554
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.54 E-value=3.7e-06 Score=94.80 Aligned_cols=148 Identities=10% Similarity=-0.024 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 25 ~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
..+-+...-....|.+ ++|++.+.+++..+|....++.....++...+ .+.+++.+++++|..+|.+
T Consensus 16 ~~~~d~~~ia~~~g~~-~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g------------~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 16 NQIADWLQIALWAGQD-AEVITVYNRYRVHMQLPARGYAAVAVAYRNLK------------QWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCC
Confidence 3455666667788999 89999999999999999999999999998886 4799999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
..+|.....++... +.+++++..++++++.+|.+.. |...+.++...+.+. +++..++++++.+|.|..++...+.+
T Consensus 83 ~~a~~~la~~l~~~-g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~-~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 83 DDYQRGLILTLADA-GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHW-DELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999888888777 4899999999999999999999 999999999999885 89999999999999999999988877
Q ss_pred HHHh
Q 013048 185 LSNL 188 (450)
Q Consensus 185 L~~L 188 (450)
+...
T Consensus 160 l~~~ 163 (765)
T PRK10049 160 LRNN 163 (765)
T ss_pred HHHC
Confidence 7654
No 53
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=3.8e-07 Score=91.23 Aligned_cols=104 Identities=16% Similarity=0.079 Sum_probs=92.6
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccch
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSK 199 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~ 199 (450)
..|++++..|+++|+++|+|.--..+|.-++.+||.++ .+++-|+.+|.+||+-.-||.-.+.++..+++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~-~AVkDce~Al~iDp~yskay~RLG~A~~~~gk--------- 164 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE-DAVKDCESALSIDPHYSKAYGRLGLAYLALGK--------- 164 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH-HHHHHHHHHHhcChHHHHHHHHHHHHHHccCc---------
Confidence 47899999999999999999999999999999999996 79999999999999999999988888888775
Q ss_pred hchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 200 EKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 200 ~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++++++.|++||.+||++++.|.-+++.-.++..
T Consensus 165 ---~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 ---YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ---HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 7999999999999999999988888877766544
No 54
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.4e-05 Score=85.14 Aligned_cols=198 Identities=14% Similarity=0.043 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC--Cc-------------
Q 013048 16 ASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS--DP------------- 80 (450)
Q Consensus 16 ~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~--dp------------- 80 (450)
..+..+.+++.+-++.. ....+ ..+++.|+++|.++ .+.+-.+.+.-+...++.+... ++
T Consensus 219 ~~k~~a~~ek~lgnaay---kkk~f-~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad 293 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAY---KKKDF-ETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD 293 (539)
T ss_pred HHHHhhhHHHHHHHHHH---HhhhH-HHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH
Confidence 35556666666665544 34455 78899999999999 8888888888777777643221 00
Q ss_pred --------------------------------------ch--hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 013048 81 --------------------------------------DS--LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (450)
Q Consensus 81 --------------------------------------e~--~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~ 120 (450)
+. ..+.++++++-.+.....+|+-...=-.++-...+. +
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~-g 372 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK-G 372 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc-c
Confidence 00 012333333444444444444433333333333333 4
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchh
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (450)
.|..++..|+++|+++|.+.-.+.+|+.++-.|+.+. ..|..++..|+.||++.-+|..++.++..|..
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~-~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---------- 441 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP-EALKDAKKCIELDPNFIKAYLRKGAALRAMKE---------- 441 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----------
Confidence 7899999999999999999999999999999999996 79999999999999999999999999998875
Q ss_pred chHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 201 KVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 201 ~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
|..+++.|..++..||++..+=--.+-++.
T Consensus 442 --ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 --YDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred --HHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 899999999999999998866544444444
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.48 E-value=5.2e-06 Score=92.52 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh
Q 013048 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ 100 (450)
Q Consensus 21 ~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~ 100 (450)
+..++.++++.-.....|++ ++|..+...+|..+|.++.||..-+.+.+..|+ .++.+.+.-.|...
T Consensus 136 ~~~l~~ll~eAN~lfarg~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd------------~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD------------IEKALNFWLLAAHL 202 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCccchhhHHHHHHHHHHccc------------HHHHHHHHHHHHhc
Confidence 34467777765555556999 899999999999999999999999999999984 78999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhcc
Q 013048 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (450)
Q Consensus 101 nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~np 172 (450)
||+++.-|.+-.-...++ +.+.+|.-||.++|+.+|.|..--.-|.-+++++|... .+++.+.+++..+|
T Consensus 203 ~p~d~e~W~~ladls~~~-~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQL-GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK-RAMETFLQLLQLDP 272 (895)
T ss_pred CCCChHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH-HHHHHHHHHHhhCC
Confidence 999999999877777777 48999999999999999999888888899999999985 79999999999998
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=1.9e-05 Score=75.20 Aligned_cols=169 Identities=9% Similarity=-0.010 Sum_probs=124.4
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLD 130 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny---~AW~hR~wvL~kl~~~~~eEL~~~~ 130 (450)
.++....++..++..+...+ .+++++..++.++..+|.++ .+|.+.+-++...+ .+++++..++
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~------------~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-~~~~A~~~~~ 94 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSG------------DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-DYAEAIAAAD 94 (235)
T ss_pred cccCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 34556677888888777765 48999999999999999986 68899998888884 8999999999
Q ss_pred HHHHhCCCChh---hhhHHHHHHHHc--------CcChHHHHHHHHHHHHhccCChhHHHHHHHH---HHHhhhhh-ccC
Q 013048 131 KFQKADSRNFH---AWNYRRFVAASM--------NRSEEDELKYTEDMICNNFSNYSAWHNRSLL---LSNLLKRK-VEG 195 (450)
Q Consensus 131 k~L~~dpkNyh---AW~yR~~vl~~L--------~~~~eeELe~~dk~I~~npsNySAW~yR~~L---L~~L~~~~-~~g 195 (450)
++++.+|++.. +|..++.+.... +.+ +++++.+++++..+|.+..++.-...+ ...+.... ..+
T Consensus 95 ~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 95 RFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA-REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred HHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 788888887665 333 478999999999999998776332211 11111000 000
Q ss_pred -ccchhchHHHHHHHHHHHHHhCCCCc---chHHHHHHHHccccc
Q 013048 196 -FVSKEKVLPDEYEFVHQAIFTDPDDQ---SGWFYHLWLLDQTVR 236 (450)
Q Consensus 196 -~~~~~~ileeELe~v~~AI~~dP~de---SaW~Y~r~LL~~~~~ 236 (450)
..-....+.+++..+.+++...|+++ .+|+.+..++..+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 00112347999999999999988754 688777777766544
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.41 E-value=1.5e-05 Score=90.69 Aligned_cols=177 Identities=13% Similarity=-0.007 Sum_probs=128.7
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHH
Q 013048 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA 107 (450)
Q Consensus 28 ~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~A 107 (450)
+.+.....++|+| ..|++.+.++|..+|++..+.+ .++.-++. .....+++..+++++ +|.+...
T Consensus 38 y~~aii~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~---dll~l~~~---------~G~~~~A~~~~eka~--~p~n~~~ 102 (822)
T PRK14574 38 YDSLIIRARAGDT-APVLDYLQEESKAGPLQSGQVD---DWLQIAGW---------AGRDQEVIDVYERYQ--SSMNISS 102 (822)
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHhhCccchhhHH---HHHHHHHH---------cCCcHHHHHHHHHhc--cCCCCCH
Confidence 4455566689999 6999999999999999964433 22221211 124689999999999 5544444
Q ss_pred HHHH--HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 013048 108 WHHR--KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (450)
Q Consensus 108 W~hR--~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL 185 (450)
...+ .-++... +.+++++++++++++.+|.|..++.....+...++... ++++.+.+++..+|.+... -.+..+.
T Consensus 103 ~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~-eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 103 RGLASAARAYRNE-KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGG-VVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHH-HHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 4444 4466555 48999999999999999999999876655556667775 8999999999999996654 3344444
Q ss_pred HHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 186 ~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
..+.+ ..++++.+++++..+|++..+..-+...|...
T Consensus 180 ~~~~~------------~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 180 RATDR------------NYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred Hhcch------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33222 45599999999999999999986555555443
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.40 E-value=3.1e-05 Score=75.32 Aligned_cols=141 Identities=14% Similarity=0.016 Sum_probs=122.6
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-+....+|.+ ..|.+..+++|..+|++|-+|..|..+.+.++. .+.+-+.+++++..+|++-.+-++
T Consensus 42 al~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge------------~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 42 ALGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE------------NDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------hhhHHHHHHHHHhcCCCccchhhh
Confidence 3455678999 899999999999999999999999999999983 467778999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~--~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
-+|.|...+ .+++++..+.+++. ..+.-.-.|-+.++|.-+.|... .+-+++.++++.||++-.+---..-+..
T Consensus 109 YG~FLC~qg-~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~-~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 109 YGAFLCAQG-RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD-QAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred hhHHHHhCC-ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch-hHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 999999885 99999999999987 35566679999999999999997 6888999999999999987554444433
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.38 E-value=3.8e-06 Score=86.73 Aligned_cols=102 Identities=7% Similarity=-0.089 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..+.+++.+++++|..+|.+..+|.+|+.++.+++ .+++++..+++++.++|.+..+|..++.++..+|.+. +++.++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~-eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ-TAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 46899999999999999999999999999999984 9999999999999999999999999999999999996 899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHh
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNL 188 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L 188 (450)
+++++.+|.|..+......+...|
T Consensus 94 ~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 94 EKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999998877766665554
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.31 E-value=3.9e-05 Score=78.43 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC
Q 013048 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (450)
Q Consensus 22 ~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n 101 (450)
++--++=.+|+++ |.| .+||.-|-.+++.||++|.|...|..+...+++ -.-+|.-++++|...
T Consensus 39 ekhlElGk~lla~---~Q~-sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk------------sk~al~Dl~rVlelK 102 (504)
T KOG0624|consen 39 EKHLELGKELLAR---GQL-SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK------------SKAALQDLSRVLELK 102 (504)
T ss_pred HHHHHHHHHHHHh---hhH-HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC------------CccchhhHHHHHhcC
Confidence 3333444556554 677 689999999999999999999999999999985 245678888999999
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh-------------hhHHHHHHHHcC--cChHHHHHHHHH
Q 013048 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA-------------WNYRRFVAASMN--RSEEDELKYTED 166 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhA-------------W~yR~~vl~~L~--~~~eeELe~~dk 166 (450)
|..+.|=..|+-++-+.+ .++++..-++++|..+|.|-.. |.-|..+..-.+ .. ...+++++.
T Consensus 103 pDF~~ARiQRg~vllK~G-ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~-~~ai~~i~~ 180 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQG-ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC-QNAIEMITH 180 (504)
T ss_pred ccHHHHHHHhchhhhhcc-cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch-hhHHHHHHH
Confidence 999999999999998874 8889999999999999866533 444444443332 23 368889999
Q ss_pred HHHhccCChhHHHHHHHHHHHhhhhh--------cc--Cccch------hc------hHHHHHHHHHHHHHhCCCCcchH
Q 013048 167 MICNNFSNYSAWHNRSLLLSNLLKRK--------VE--GFVSK------EK------VLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 167 ~I~~npsNySAW~yR~~LL~~L~~~~--------~~--g~~~~------~~------ileeELe~v~~AI~~dP~deSaW 224 (450)
.|++.|=+.|...+|..++-.-+.-. .. ..... .+ -.+..|.-+..-+.+||++..++
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 99999999999888887765433210 00 00000 01 13677888899999999999999
Q ss_pred HHHHHHH
Q 013048 225 FYHLWLL 231 (450)
Q Consensus 225 ~Y~r~LL 231 (450)
-+++-|-
T Consensus 261 ~~YKklk 267 (504)
T KOG0624|consen 261 PFYKKLK 267 (504)
T ss_pred HHHHHHH
Confidence 7766543
No 61
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=98.23 E-value=8.2e-07 Score=75.00 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=38.8
Q ss_pred ccccCCCCCCcccccCCCCccceEEeeccccccccccceEEecccCcC-ccceeeeCCCCCCccceeEEEeccCC
Q 013048 259 RCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNSSTITVDSELNTN-KDLVWKPLSSCNSKAAQVWVTQLNLP 332 (450)
Q Consensus 259 ~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~w~~~l~~~ 332 (450)
.|+|+ +.|.++ +.++||+||.+ ++.+|...+++. +.+.||+++.+ .+.|+||+|+||..
T Consensus 4 rCl~V---------Sr~e~~--l~V~FSrPv~v---~~~~LlL~~D~~Pl~VeWRtp~gr-~r~s~vWlcdLP~~ 63 (102)
T PF07711_consen 4 RCLHV---------SRDEAC--LTVAFSRPVNV---GSETLLLFVDGSPLTVEWRTPDGR-NRPSHVWLCDLPAG 63 (102)
T ss_dssp EEEEE---------ETTTTE--EEEEEEEEE-S---TTB-EEEEESSSEE----B-TTSS---SEEEEEEE--GG
T ss_pred EEEEE---------ecccCe--EEEEecceeee---eeeeEEEEEcCCceEEEeeCCCCC-CCcCeEEEEeCCcc
Confidence 68888 788888 89999999987 555566666666 89999999955 48899999999974
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.21 E-value=2.1e-05 Score=76.50 Aligned_cols=126 Identities=16% Similarity=0.070 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
.++..+..-++++|+.+|++|.+|.-|..+.++.+ ..+.+-+.|.++++++|+|-..-++-+|.|-..|.++ ++++++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~-eA~q~F 126 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE-EAMQQF 126 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH-HHHHHH
Confidence 46789999999999999999999999999999985 7889999999999999999999999999999999886 899999
Q ss_pred HHHHHh--ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 165 EDMICN--NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 165 dk~I~~--npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
++++.. .+.-+-.|-+.+++-.+.+. ...+-+.+.++|..+|+...+-
T Consensus 127 ~~Al~~P~Y~~~s~t~eN~G~Cal~~gq------------~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 127 ERALADPAYGEPSDTLENLGLCALKAGQ------------FDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHHhCCCCCCcchhhhhhHHHHhhcCC------------chhHHHHHHHHHHhCcCCChHH
Confidence 999983 56777788889888777664 4677788999999999988664
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.21 E-value=6.5e-05 Score=75.54 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=122.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.....|.+ +++++.+.++|..+|++..+|.. ...+..++.... ........++.....+|....+....+
T Consensus 52 ~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 52 SAWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG--------MRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc--------CchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 34567888 89999999999999999999886 555444442111 123333334444456677777777777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh----hHHHHHHHHHHHh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY----SAWHNRSLLLSNL 188 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy----SAW~yR~~LL~~L 188 (450)
.++... +.++++++.++++++++|.+.+++...+.++...|.++ +.++++++++...|.+. ..|.+.+.++...
T Consensus 122 ~~~~~~-G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~-eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEA-GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK-EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHc-CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 888877 48999999999999999999999999999999999986 79999999999887543 2355566665555
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 189 ~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
++ +++++..+++++...|
T Consensus 200 G~------------~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GD------------YEAALAIYDTHIAPSA 217 (355)
T ss_pred CC------------HHHHHHHHHHHhcccc
Confidence 43 6899999999987766
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.2e-05 Score=80.30 Aligned_cols=131 Identities=14% Similarity=0.071 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
++++...+...-++|+-.+.=..++....+. +.|..++..|+++|.++|++..++.+|.-++.+++ .
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~------------gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~-~ 407 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKK------------GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG-E 407 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhc------------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-h
Confidence 3444444444455555444444444333333 46999999999999999999999999999999985 8
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
+.++|+.|++++++||.+.-+|..++.++..+..|+ ++++.|.++++.||++-.+--.-+-++.
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd-kAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD-KALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999997 8999999999999998765444333443
No 65
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00058 Score=67.51 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=142.1
Q ss_pred HHHHH-HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 26 VLQSQ-FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 26 ~l~~~-~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
.++.+ |-+....|.. .-|..++.++-...|+.+-+=...+..|+..+ .++++++.++.+|..||-+
T Consensus 53 ~l~EqV~IAAld~~~~-~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~------------~~~~A~e~y~~lL~ddpt~ 119 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRD-DLAQKCINQLRDRFPGSKRVGKLKAMLLEATG------------NYKEAIEYYESLLEDDPTD 119 (289)
T ss_pred HHHHHHHHHHHHhcch-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh------------chhhHHHHHHHHhccCcch
Confidence 34444 5577777887 78899999999988999999888888888887 4899999999999999998
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
.-..- |+..+.+..+.--++|+-++..++.-+.+..||.+-.-+.-.++.+. .+.=|+++.+-.+|.|+-..--.+-+
T Consensus 120 ~v~~K-RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~-kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 120 TVIRK-RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE-KAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred hHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77665 66655544345558999999999999999999999999988888885 78889999999999998655555556
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 185 L~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
+..++. .+-++-+.++|.+++.++|.+--+|+
T Consensus 198 ~Yt~gg---------~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 198 LYTQGG---------AENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHhh---------HHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 555542 12357888999999999999888885
No 66
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=2.2e-05 Score=60.84 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=40.0
Q ss_pred ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh-hhhccCccchhchHHHHHHHHHHHHHhC
Q 013048 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL-KRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (450)
Q Consensus 139 NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~-~~~~~g~~~~~~ileeELe~v~~AI~~d 217 (450)
|..+|..++.++...+.+. +++.+++++|+.+|++..+|..++.+...++ + +.++++++++++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~-~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~------------~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYE-EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD------------YEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH------------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc------------HHHHHHHHHHHHHcC
Confidence 3445666666666666654 5666666666666666666666666655554 2 456666666666666
Q ss_pred C
Q 013048 218 P 218 (450)
Q Consensus 218 P 218 (450)
|
T Consensus 69 P 69 (69)
T PF13414_consen 69 P 69 (69)
T ss_dssp T
T ss_pred c
Confidence 5
No 67
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.03 E-value=3.2e-05 Score=59.84 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
+..+|..++.++...+ .+++++..+++++..+|++..+|..++.+...++..++++++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~------------~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG------------DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4456777777766665 3677777777777777777777777777776663146677777777777766
No 68
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0013 Score=65.12 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=137.9
Q ss_pred HHHHHHHHHhh-cCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC
Q 013048 26 VLQSQFLHNHH-NHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (450)
Q Consensus 26 ~l~~~~~~~~~-~geyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n 101 (450)
.+++++..=+. .+.-+++.+++...++..-+.- -..|-.--.++..... .....-+..|++.+-...
T Consensus 12 ~l~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld---------~~~~~lAq~C~~~L~~~f 82 (289)
T KOG3060|consen 12 ELRDQMRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD---------TGRDDLAQKCINQLRDRF 82 (289)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHhC
Confidence 45555554343 3445589999999998876665 2455544444433332 134677889999999899
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHH
Q 013048 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR 181 (450)
|+|+.+=--.+..++.. +.+++++++|+..++.||-|...---|-.++...|... ++|+-..+.++.-+.|..||++.
T Consensus 83 p~S~RV~~lkam~lEa~-~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEAT-GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-EAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred CCChhHHHHHHHHHHHh-hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999988888888877 48999999999999999999988776666677788886 79999999999999999999999
Q ss_pred HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 182 ~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
.-+.-.++. ++.+.=|+...+-+.|-++-.
T Consensus 161 aeiY~~~~~------------f~kA~fClEE~ll~~P~n~l~ 190 (289)
T KOG3060|consen 161 AEIYLSEGD------------FEKAAFCLEELLLIQPFNPLY 190 (289)
T ss_pred HHHHHhHhH------------HHHHHHHHHHHHHcCCCcHHH
Confidence 999888764 799999999999999987643
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.96 E-value=0.00012 Score=81.81 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
.+++++...+..+|+.+|+++.||+.-+-|.++.+ +.++.+.+.-.+...+|+++.-|..-+-....++.+. .+.-|+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~-qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN-QARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH-HHHHHH
Confidence 67899999999999999999999999999999884 8899999999999999999999999999999999875 799999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
.++|..+|.|.-.-.-|..|++++|. +..|++.+.+++..+|
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~------------~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGD------------LKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCh------------HHHHHHHHHHHHhhCC
Confidence 99999999998888888899998886 5677777777777777
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.94 E-value=0.00056 Score=68.77 Aligned_cols=157 Identities=11% Similarity=-0.052 Sum_probs=118.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 38 HIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
|.+ +++...+.+++..+|.+ ..+...+..+....+ ++++++.++++++..+|++..+|.. ...
T Consensus 20 ~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g------------~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 20 GER-PAAAAKAAAAAQALAARATERERAHVEALSAWIAG------------DLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred CCc-chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 455 56677778888777766 445666665555544 4789999999999999999999885 434
Q ss_pred HHhCC---CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 115 LSKGH---SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 115 L~kl~---~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
+..++ +......+.+......+|....+....++++...|.+. ++++.++++++.+|.+..+++..+.++...++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~-~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~- 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD-RAEEAARRALELNPDDAWAVHAVAHVLEMQGR- 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-
Confidence 33221 23334444444444566777777778888999899886 79999999999999999999999999887764
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
+++++.++.+++...|.+.
T Consensus 164 -----------~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 164 -----------FKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred -----------HHHHHHHHHhhhhccCCCc
Confidence 7999999999999988644
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00025 Score=53.91 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
+|..++-++... +.+++++..+.++++..|.+..+|...+.++...+.+. ++++++++++..+|.+..+|...+.++.
T Consensus 2 ~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKL-GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE-EALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 355555555555 37888899999999988888888888888888888775 7888889999988888888888888777
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 013048 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 187 ~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~ 219 (450)
..+. ++++.+.+..++..+|.
T Consensus 80 ~~~~------------~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGK------------YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHh------------HHHHHHHHHHHHccCCC
Confidence 6654 57788888888877773
No 72
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.90 E-value=0.00026 Score=65.37 Aligned_cols=101 Identities=11% Similarity=-0.005 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC
Q 013048 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (450)
Q Consensus 22 ~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n 101 (450)
+.+-.++..-....+.|++ ++|..++..+..++|.+...|..-+.+.+.++ .+.+++.++.+++..+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l-~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g------------~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEF-AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK------------HWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHhcC
Confidence 4445555555556666666 66677777777777777777777776666665 3667777777777777
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 013048 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d 136 (450)
|+++.+-.|-+.++..++ ..+.+.+.+..++...
T Consensus 100 ~ddp~~~~~ag~c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHHh
Confidence 777777777766666663 6666666666666554
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00037 Score=58.15 Aligned_cols=100 Identities=13% Similarity=0.012 Sum_probs=76.3
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 28 ~~~~~~~~~~geyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
+.........|.+ ++|++.+.+++..+|++ ..++...+.++...+ .+++++..++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 6 YDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG------------KYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc------------cHHHHHHHHHHHHHHCCCC
Confidence 3444455567888 78888888888888876 567777888877775 3788888888888888775
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh
Q 013048 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH 141 (450)
Q Consensus 105 ---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh 141 (450)
..+|...++++.+++ .+++++.+++++++..|.+-.
T Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELG-DKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred CcccHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHCcCChh
Confidence 567777788887774 778888888888888887643
No 74
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00025 Score=53.93 Aligned_cols=88 Identities=23% Similarity=0.149 Sum_probs=63.6
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|.+ ++|++.+.+++..+|++..+|..++.++...+ .+++++.+++.++..+|++..+|.....++
T Consensus 12 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 12 KLGDY-DEALEYYEKALELDPDNADAYYNLAAAYYKLG------------KYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHhcH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 35666 67777888888888877777777777776664 367777777777777777777777776666
Q ss_pred HhCCCChHHHHHHHHHHHHhCC
Q 013048 116 SKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dp 137 (450)
...+ .+++++..+.++++.+|
T Consensus 79 ~~~~-~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLG-KYEEALEAYEKALELDP 99 (100)
T ss_pred HHHH-hHHHHHHHHHHHHccCC
Confidence 6553 66777777777777665
No 75
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00022 Score=68.53 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHH
Q 013048 12 EDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL 91 (450)
Q Consensus 12 e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL 91 (450)
|+..+.++++..++.==+-+| .+|.| ++|..-|..+|.+.|...+ --|..+
T Consensus 86 eek~k~~~kad~lK~EGN~~F---~ngdy-eeA~skY~~Ale~cp~~~~--e~rsIl----------------------- 136 (271)
T KOG4234|consen 86 EEKDKAIEKADSLKKEGNELF---KNGDY-EEANSKYQEALESCPSTST--EERSIL----------------------- 136 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---hcccH-HHHHHHHHHHHHhCccccH--HHHHHH-----------------------
Confidence 444455556666655555555 35899 8999999999999998876 112111
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
+.+|.-++.++. .++.+++-|.++|+++|.+..|--.|..+..++..++ ++|+-|++.++.+
T Consensus 137 ----------------y~Nraaa~iKl~-k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e-ealeDyKki~E~d 198 (271)
T KOG4234|consen 137 ----------------YSNRAAALIKLR-KWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE-EALEDYKKILESD 198 (271)
T ss_pred ----------------HhhhHHHHHHhh-hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHhC
Confidence 223444444442 4556666666666666666666666666666665554 5666666666666
Q ss_pred cCChh
Q 013048 172 FSNYS 176 (450)
Q Consensus 172 psNyS 176 (450)
|++..
T Consensus 199 Ps~~e 203 (271)
T KOG4234|consen 199 PSRRE 203 (271)
T ss_pred cchHH
Confidence 66653
No 76
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.87 E-value=0.00012 Score=67.24 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=94.6
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhH
Q 013048 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA 177 (450)
Q Consensus 101 nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySA 177 (450)
+++...+++.++.++... +.+++++.+++++++.+|.. ..+|...+.+...+|.++ +++.++.+++..+|.+..+
T Consensus 31 ~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQAD-GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD-KALEYYHQALELNPKQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcccHHH
Confidence 445666677777777776 48999999999999987653 468899999999999996 8999999999999999999
Q ss_pred HHHHHHHHHHhhhhhc-cC-ccchhchHHHHHHHHHHHHHhCCCC
Q 013048 178 WHNRSLLLSNLLKRKV-EG-FVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 178 W~yR~~LL~~L~~~~~-~g-~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
+..++.++..++.... .+ .......++++++++.+++..+|++
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999887764211 11 1223445789999999999999998
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00024 Score=65.27 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=93.8
Q ss_pred HHHHHHHHHhCCCcHHHH--HHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCC
Q 013048 45 VELSTKLLETNPELYTAW--NYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGH 119 (450)
Q Consensus 45 L~lt~~~L~~NPd~ytAW--n~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---y~AW~hR~wvL~kl~ 119 (450)
-+.+..++..+++...++ ..++..+...+ .+++++.++++++..+|+. ..+|.+.+.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 86 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADG------------EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG 86 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC
Confidence 345566666666666655 44555555554 5899999999999888764 468999999998884
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC-------------hHHHHHHHHHHHHhccCCh
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-------------EEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~-------------~eeELe~~dk~I~~npsNy 175 (450)
.+++++.++.+++..+|.+..++...+.++..++.. .++.++++.+++..+|.|+
T Consensus 87 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 87 -EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred -CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999999999999999888762 2467888888888888885
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.83 E-value=0.00074 Score=73.68 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=121.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
.++.........+.| ...|++...+|...|+|...-..+|..|..+++ -+++..++...++.++||+
T Consensus 9 ~lF~~~lk~yE~kQY-kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~------------~~ea~~~vr~glr~d~~S~ 75 (700)
T KOG1156|consen 9 ALFRRALKCYETKQY-KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK------------KEEAYELVRLGLRNDLKSH 75 (700)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHhCCccchhHHhccchhhcccc------------hHHHHHHHHHHhccCcccc
Confidence 344555566778899 789999999999999999999999999999984 5899999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHH
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~ 183 (450)
-+||--+.+...- ..|+++++||..++.++|.|-+.|.--..+-.+|+.+. --++.=.+.++.+|++.-.|.--..
T Consensus 76 vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 76 VCWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999887776655 48999999999999999999999998888888888774 4555556778889999988865433
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.80 E-value=0.0027 Score=65.35 Aligned_cols=198 Identities=12% Similarity=0.088 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC------------CCc
Q 013048 13 DAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND------------SDP 80 (450)
Q Consensus 13 ~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~------------~dp 80 (450)
+...+.+.+++-+.+..++......|.+ ..++..++.+|++.|=+.....+|..++...+.--. .|.
T Consensus 144 eaqskl~~~~e~~~l~~ql~s~~~~GD~-~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 144 EAQSKLALIQEHWVLVQQLKSASGSGDC-QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 3344556788888889999999999999 899999999999999999999999999887652100 011
Q ss_pred -c---------hhhhhHHHHHHHHHHHHHhCCCChHHHHHH---HHHHHhCC--------CChHHHHHHHHHHHHhCCCC
Q 013048 81 -D---------SLKSILDEELRVVESALRQNFKSYGAWHHR---KWILSKGH--------SSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 81 -e---------~~~~~~~eEL~~~e~aL~~nPKny~AW~hR---~wvL~kl~--------~~~~eEL~~~~k~L~~dpkN 139 (450)
+ ......+..|.....||+.||..-.++-+- +-+...+. +.|.+-++-.+++++.+|.-
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~ 302 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE 302 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc
Confidence 0 012567888999999999999764444433 33333331 35667788888888888862
Q ss_pred hhh--hhHHHH--HHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 140 FHA--WNYRRF--VAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 140 yhA--W~yR~~--vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
... =.+|.. +...-+.+ -++|+-|.+++..+|+|..+...|.-.+-. .++|+++|..|.+|.+
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~-~eAiqqC~evL~~d~~dv~~l~dRAeA~l~------------dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQF-GEAIQQCKEVLDIDPDDVQVLCDRAEAYLG------------DEMYDDAIHDYEKALE 369 (504)
T ss_pred cceeeeeeheeeecccccCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHh
Confidence 221 111111 11222333 479999999999999999999998776432 3569999999999999
Q ss_pred hCCCCcchH
Q 013048 216 TDPDDQSGW 224 (450)
Q Consensus 216 ~dP~deSaW 224 (450)
.+|+|..+=
T Consensus 370 ~n~sn~~~r 378 (504)
T KOG0624|consen 370 LNESNTRAR 378 (504)
T ss_pred cCcccHHHH
Confidence 999998653
No 80
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.00062 Score=72.25 Aligned_cols=158 Identities=7% Similarity=-0.005 Sum_probs=128.3
Q ss_pred HHHhCCCcH---HHH----HHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHhCC-
Q 013048 51 LLETNPELY---TAW----NYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL---RQNFKSYGAWHHRKWILSKGH- 119 (450)
Q Consensus 51 ~L~~NPd~y---tAW----n~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL---~~nPKny~AW~hR~wvL~kl~- 119 (450)
+...-|.+. .+| ..|+.....-+ .| .....++.++.+|+ ..+|....++-.+.|+-....
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~-----t~----~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDF-----TP----ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhcc-----CH----HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 455557777 888 34554333322 22 35789999999999 999999999988888776431
Q ss_pred -------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 120 -------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 120 -------~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
....+++++-.+++++||.|..|-...+.++...+.+. ..+..+++++..+|+...+|+++++++..-++
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~-~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-- 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAK-VSHILFEQAKIHSTDIASLYYYRALVHFHNEK-- 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchh-hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--
Confidence 12457889999999999999999999999998888875 78889999999999999999999999887664
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~L 230 (450)
.+++++.++++++++|....+=.-+.|+
T Consensus 388 ----------~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 388 ----------IEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred ----------HHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 6999999999999999888777666666
No 81
>PRK11906 transcriptional regulator; Provisional
Probab=97.76 E-value=0.0011 Score=70.55 Aligned_cols=138 Identities=8% Similarity=-0.020 Sum_probs=114.5
Q ss_pred HHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 013048 42 KEAVELSTKLL---ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (450)
Q Consensus 42 eeAL~lt~~~L---~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl 118 (450)
++|+.++.+++ .++|++..++-.+.++-....-.-..++ .....+++++.++++..+|.+..|-...+.++-..
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~---~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSEL---ELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 68899999999 9999999999888887665521111222 24578999999999999999999988888877766
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 119 ~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
. .++.++..+++++.++|....+|.+++|+.-.-|+.+ ++++..+++++.+|.---|=.-+-++
T Consensus 352 ~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~-~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 352 G-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE-EARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred c-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH-HHHHHHHHHhccCchhhHHHHHHHHH
Confidence 4 6899999999999999999999999999999999985 89999999999999886554444333
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00039 Score=72.61 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=136.0
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHH---------
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA--------- 107 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~A--------- 107 (450)
.|.| .+|++.+-.+|.+++.+..|-.-|+.++.-.. ....++..++++|+.+|..+.+
T Consensus 182 ~~~~-~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~------------~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 182 LGDY-DEAQSEAIDILKLDATNAEALYVRGLCLYYND------------NADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred cccc-hhHHHHHHHHHhcccchhHHHHhccccccccc------------chHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3667 79999999999999999999999999988775 3577888888888887766554
Q ss_pred ---HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC----hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHH
Q 013048 108 ---WHHRKWILSKGHSSIDNELRLLDKFQKADSRN----FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHN 180 (450)
Q Consensus 108 ---W~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN----yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~y 180 (450)
|--|+--+.+. +.|..+-++|..+|.+||.| .++..+|+-+.-++++.. ++|.-|+.++++|++-.-|.+-
T Consensus 249 le~~k~~gN~~fk~-G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~-eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 249 LEVKKERGNDAFKN-GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR-EAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred HHHHHhhhhhHhhc-cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch-hhhhhhhhhhhcCHHHHHHHHH
Confidence 44444444444 58999999999999999975 577889999999999996 8999999999999999999999
Q ss_pred HHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC--CcchHHHHHHHHcc
Q 013048 181 RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD--DQSGWFYHLWLLDQ 233 (450)
Q Consensus 181 R~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~--deSaW~Y~r~LL~~ 233 (450)
|+.+-.-|.. ++++++.+.+++...-+ +...|--...-|.+
T Consensus 327 ra~c~l~le~------------~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 327 RANCHLALEK------------WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 9888776654 79999999999976544 55555443334433
No 83
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.002 Score=73.02 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=144.4
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC---C---------------------------------CCc
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN---D---------------------------------SDP 80 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~---~---------------------------------~dp 80 (450)
++.. .+|......+|.+|-++.++|-+-|.+.......- . .+|
T Consensus 543 k~~~-~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNL-YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCc-HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 3444 69999999999999999999999885443332100 0 123
Q ss_pred chhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHH
Q 013048 81 DSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDE 160 (450)
Q Consensus 81 e~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeE 160 (450)
+.....+.++|.+|.++|+.+|||-.|=+.-+.||-.. +.+.+++..+.++.+--..++.+|-+-+.|+-..+.|- .+
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k-g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~-~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK-GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR-LA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc-cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH-HH
Confidence 33456789999999999999999999999999999876 48899999999998877789999999999999999986 79
Q ss_pred HHHHHHHHHhcc--CChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 161 LKYTEDMICNNF--SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 161 Le~~dk~I~~np--sNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
++-|...++... .++...+|.+-.+..-+ .|+++.+....|+...|.|.+.=|....++.++
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~------------~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAG------------KLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 999998888653 34445555555554433 489999999999999999999988877777553
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.67 E-value=0.00091 Score=74.14 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChH-HHHHHHH
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEE-DELKYTE 165 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~e-eELe~~d 165 (450)
-+++.-|...+-.++|-+...|+-|+-++... +...++.+.|..++.+||....+=.-.+-++...|..-. +.-.+..
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 46778899999999999999999998888766 378899999999999999999999999999999986531 2223678
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 166 DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 166 k~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
.+++.||.|..||+|.|.+++.+|. .+++.+||+.|+.+++.++
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd------------~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGD------------SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccc------------hHHHHHHHHHHHhhccCCC
Confidence 8999999999999999999999986 5899999999999988765
No 85
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.66 E-value=0.0029 Score=68.81 Aligned_cols=154 Identities=11% Similarity=0.003 Sum_probs=102.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--CC-----h
Q 013048 50 KLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--SS-----I 122 (450)
Q Consensus 50 ~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~--~~-----~ 122 (450)
.+...-|.+.+||-+=-+....+.+ .+ ...+.+++.++++++..+|.+..+|..+.++..... .. +
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~---~~----~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l 400 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNS---GD----AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQL 400 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 3345667777888743222222221 11 235789999999999999999988888766553221 11 2
Q ss_pred HHHHHHHHHHHHh--CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchh
Q 013048 123 DNELRLLDKFQKA--DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKE 200 (450)
Q Consensus 123 ~eEL~~~~k~L~~--dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~ 200 (450)
....+...+++.+ +|....++.=.+.+....+.++ ++...+++++..+|+ .-+|..++.++...|+
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~-~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~---------- 468 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD-EAYQAINKAIDLEMS-WLNYVLLGKVYELKGD---------- 468 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC----------
Confidence 2334444554453 5555444333333333345564 799999999999994 6789999988887765
Q ss_pred chHHHHHHHHHHHHHhCCCCcchHH
Q 013048 201 KVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 201 ~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
++++++.+.+|+.++|.++. |+
T Consensus 469 --~~eA~~~~~~A~~L~P~~pt-~~ 490 (517)
T PRK10153 469 --NRLAADAYSTAFNLRPGENT-LY 490 (517)
T ss_pred --HHHHHHHHHHHHhcCCCCch-HH
Confidence 69999999999999999984 53
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00065 Score=73.22 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..|+++++|++.||..+|.+|..|+--+-.|-... +..+++..|++++++.|....+|++-+.....+|-|. ++.+++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk-EA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN-RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK-EAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH-HHHHHH
Confidence 46999999999999999999999998899998764 7899999999999999999999999999999999996 899999
Q ss_pred HHHHHhccC----------ChhHHHHHHHHHHHhhh
Q 013048 165 EDMICNNFS----------NYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 165 dk~I~~nps----------NySAW~yR~~LL~~L~~ 190 (450)
-.+|.+... |...|.+.+..|..+.+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999998776 23589888877766654
No 87
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0021 Score=69.32 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=123.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC---------------Ccc------hh-hhhHHHHHHHHH
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS---------------DPD------SL-KSILDEELRVVE 95 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~---------------dpe------~~-~~~~~eEL~~~e 95 (450)
|.+ .+|=..+.++-.++|.+..||.+-|..+.-.+..+++ -|- .. ...+.-+=+|+.
T Consensus 326 ~k~-seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKY-SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCc-HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 556 5778888888888888888888777766554421110 110 00 133444556667
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----C---CCChhhhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 96 SALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA----D---SRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 96 ~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~----d---pkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
.++.++|.++-+-|.-+-+..+. ..|.+++.++.+++.. . ++=...|++-|.+.++++.+. ++|.++.++|
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~-eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE-EAIDYYQKAL 482 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH-HHHHHHHHHH
Confidence 77777777776666665555544 3678889988888731 1 112344888899999999996 8999999999
Q ss_pred HhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 169 ~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
...|.|.+...-.+++...+++ ++.+++.+++|+.++|+|+.+
T Consensus 483 ~l~~k~~~~~asig~iy~llgn------------ld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGN------------LDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcC------------hHHHHHHHHHHHhcCCccHHH
Confidence 9999999998888888777765 799999999999999999844
No 88
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.00093 Score=60.98 Aligned_cols=134 Identities=11% Similarity=0.024 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHcCcChHHH
Q 013048 86 ILDEELRVVESALRQNFKS--YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDE 160 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKn--y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy---hAW~yR~~vl~~L~~~~eeE 160 (450)
.+......+..+++.+++. ..+|+..+.+.... +.+++++..+.+++.+.|..+ .+|...+.+....+.+. ++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~-eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE-GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT-KA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH-HH
Confidence 4555556666666666665 67778777777776 489999999999999877643 48999999999999996 89
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhhhhh-ccC-ccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK-VEG-FVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 161 Le~~dk~I~~npsNySAW~yR~~LL~~L~~~~-~~g-~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
++++.+++..+|.+..+|.+++.++..+++.. ..| +......+.+++..+.+++..+|.+.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999998665321 011 11122346788899999999999654
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.59 E-value=0.00025 Score=54.30 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=54.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
......|+| ++|+..+.++|..+|++..+|...+.++...+ .+++++..+++++..+|.++
T Consensus 5 ~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQG------------RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCCC
Confidence 445678999 89999999999999999999999999999887 48999999999999999874
No 90
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00046 Score=72.07 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch-------
Q 013048 20 KAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS------- 82 (450)
Q Consensus 20 ~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~------- 82 (450)
.+++.+..=++| +.+..| .+||+.|+.+|.+.|++...|-.|...+..+++.+.+ +|..
T Consensus 48 ~Ae~~k~~gn~~---yk~k~Y-~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 48 QAEEAKEEGNAF---YKQKTY-GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred HHHHHHhhcchH---HHHhhH-HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence 344444444444 345778 7999999999999999999999999999999865431 1000
Q ss_pred ---------------------------------------------------------hhhhHHHHHHHHHHHHHhCCCCh
Q 013048 83 ---------------------------------------------------------LKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 83 ---------------------------------------------------------~~~~~~eEL~~~e~aL~~nPKny 105 (450)
..+++.+++..+-.+++.+++|-
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~ 203 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA 203 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh
Confidence 01345556666666777777777
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh------------hhHHHHHHHHcCcChHHHHHHHHHHHHhccC
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA------------WNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhA------------W~yR~~vl~~L~~~~eeELe~~dk~I~~nps 173 (450)
.+-+-|+-++.... ..+.++..++++|.+||....+ |.-|+--+-+-|.+ .++-++|..+|.+||+
T Consensus 204 ~al~vrg~~~yy~~-~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y-~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 204 EALYVRGLCLYYND-NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY-RKAYECYTEALNIDPS 281 (486)
T ss_pred HHHHhccccccccc-chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch-hHHHHHHHHhhcCCcc
Confidence 77777777776553 5677788888888887754433 33333333333445 3788999999999998
Q ss_pred Chh----HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 013048 174 NYS----AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 174 NyS----AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~ 219 (450)
|-- .+.+|..+.-.|++ +.++|..+..|+.+||.
T Consensus 282 n~~~naklY~nra~v~~rLgr------------l~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGR------------LREAISDCNEALKIDSS 319 (486)
T ss_pred ccchhHHHHHHhHhhhcccCC------------chhhhhhhhhhhhcCHH
Confidence 753 24455555555554 79999999999999996
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.53 E-value=0.0021 Score=73.38 Aligned_cols=138 Identities=9% Similarity=0.036 Sum_probs=104.7
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYR--KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~R--r~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
...|.+ ++|+..+++++ +|++......+ ..++...+ .+++++..++++++.+|++..++..-.
T Consensus 79 ~~~G~~-~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g------------dyd~Aiely~kaL~~dP~n~~~l~gLa 143 (822)
T PRK14574 79 GWAGRD-QEVIDVYERYQ--SSMNISSRGLASAARAYRNEK------------RWDQALALWQSSLKKDPTNPDLISGMI 143 (822)
T ss_pred HHcCCc-HHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 355777 79999999999 66555555555 44555544 488999999999999999999887553
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
.+.... ...+++++.++++...+|.+... .-+..+....+... ++++.++++++.+|.|..+..-+..++..++-
T Consensus 144 ~~y~~~-~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 144 MTQADA-GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHhhc-CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 444444 47889999999999999987776 66666666656665 59999999999999999988877777776653
No 92
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.53 E-value=0.0098 Score=62.30 Aligned_cols=187 Identities=13% Similarity=-0.070 Sum_probs=133.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC-------------CCcchh--------hhhHHH--
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND-------------SDPDSL--------KSILDE-- 89 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~-------------~dpe~~--------~~~~~e-- 89 (450)
-....|.+ ++|+...+.++..+|++..+...-+.+....++.+. .+++.. ...+.+
T Consensus 162 l~l~~~~~-~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNEL-HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34457888 899999999999999999998888877777664211 112111 011111
Q ss_pred ---HHHHHHHHHHhCC----CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh--hHHHHHHHHcCcChHHH
Q 013048 90 ---ELRVVESALRQNF----KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW--NYRRFVAASMNRSEEDE 160 (450)
Q Consensus 90 ---EL~~~e~aL~~nP----Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW--~yR~~vl~~L~~~~eeE 160 (450)
....+..+....| ++..++..-.-.+... +.++++++.++++++..|.+.... ..+....-..+.. ...
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~-g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDC-DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-EKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-HHH
Confidence 1235666677777 5888888887777777 489999999999999999987542 3333322222223 468
Q ss_pred HHHHHHHHHhccCCh--hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHH--HHHHhCCCCcchHHHHHHHHcccc
Q 013048 161 LKYTEDMICNNFSNY--SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH--QAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 161 Le~~dk~I~~npsNy--SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~--~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
++..+++++.+|.|. ......++++.+.+. +.++.++++ .++..+|+++... .+.-++.+..
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~------------~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g 384 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGE------------FIEAADAFKNVAACKEQLDANDLA-MAADAFDQAG 384 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHccc------------HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcC
Confidence 889999999999999 777788888877654 799999999 6888999888755 5555555543
No 93
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.0024 Score=69.39 Aligned_cols=128 Identities=9% Similarity=-0.003 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--NFKSYGAWHHRKWILSKGH 119 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~--nPKny~AW~hR~wvL~kl~ 119 (450)
.+|+.++++++.++|++..||-.+..+....... +|. ....+........+++.. +|....++.-...+....
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~---~~~-~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~- 433 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ---QPL-DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK- 433 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc---CCc-cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc-
Confidence 6899999999999999999999887755443321 110 012345556666666654 565555544343333333
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChh
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNyS 176 (450)
+.++++...+++++.++| +..+|...+.+....|+++ ++++.+.+++.++|.+..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~-eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR-LAADAYSTAFNLRPGENT 488 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCch
Confidence 589999999999999999 6889999999999999996 899999999999999884
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.0014 Score=60.60 Aligned_cols=102 Identities=7% Similarity=-0.063 Sum_probs=78.4
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHH
Q 013048 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR 181 (450)
++.-..-+-....+... +.++++..+|..++.+||.|+..|..-+-+.+.++.+. +++++|.+++..+|+|+.+..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~-G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~-~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEV-KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG-EAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCCCCchHHHHH
Confidence 33334444445555555 47888888888888888888888888888888888885 78888888888888888888888
Q ss_pred HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC
Q 013048 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (450)
Q Consensus 182 ~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~d 217 (450)
+.++..+++ ...+.++++.||...
T Consensus 110 g~c~L~lG~------------~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDN------------VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCC------------HHHHHHHHHHHHHHh
Confidence 888888775 477777777777654
No 95
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.50 E-value=0.0032 Score=52.44 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHcCcChHH
Q 013048 86 ILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEED 159 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKn---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN---yhAW~yR~~vl~~L~~~~ee 159 (450)
.+.+++..++.++..+|++ ..++...+.++...+ .++.++..+++++..+|.+ ..+|...+.++..++.+. +
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~ 94 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE-K 94 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH-H
Confidence 5899999999999999987 568888888888874 8999999999999999886 457888899999999886 7
Q ss_pred HHHHHHHHHHhccCChh
Q 013048 160 ELKYTEDMICNNFSNYS 176 (450)
Q Consensus 160 ELe~~dk~I~~npsNyS 176 (450)
++.++++++..+|++-.
T Consensus 95 A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 95 AKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHCcCChh
Confidence 99999999999998854
No 96
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0019 Score=58.86 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCc--HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHh
Q 013048 43 EAVELSTKLLETNPEL--YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSK 117 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~--ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny---~AW~hR~wvL~k 117 (450)
.+.+....++..++.. ..+|+..+.+....+ .+++++..+.+++...|+.. .+|...+.++..
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEG------------EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4444555555566655 566666776666655 37888888888887776643 477777778777
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc-------CcC------hHHHHHHHHHHHHhccCCh
Q 013048 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM-------NRS------EEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 118 l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L-------~~~------~eeELe~~dk~I~~npsNy 175 (450)
.+ .+++++.++.+++.++|.+..+|...+.+...+ |.+ ..+.+..+.+++..+|.++
T Consensus 85 ~g-~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 85 NG-EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 74 788888888888888888888888888888743 333 1355666777777887766
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.48 E-value=0.0094 Score=64.87 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=103.3
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|.+ ++|...+..+|..||+++.-...-..++.-... .++ .....-+.+++......|++..+ |+..|
T Consensus 50 kLg~~-~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~---~~~----~~~~~~~~~y~~l~~~yp~s~~~---~rl~L 118 (517)
T PF12569_consen 50 KLGRK-EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ---LSD----EDVEKLLELYDELAEKYPRSDAP---RRLPL 118 (517)
T ss_pred HcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc---ccc----ccHHHHHHHHHHHHHhCccccch---hHhhc
Confidence 45777 788889999999999888766655544422210 011 13566678888888888886543 33333
Q ss_pred HhCC--------------------CC--------hH--HHHHHHHHHHH-------h------------CCCCh--hhhh
Q 013048 116 SKGH--------------------SS--------ID--NELRLLDKFQK-------A------------DSRNF--HAWN 144 (450)
Q Consensus 116 ~kl~--------------------~~--------~~--eEL~~~~k~L~-------~------------dpkNy--hAW~ 144 (450)
..+. +. |. .-...+..++. . .|.-. .++.
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~ 198 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLY 198 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHH
Confidence 3221 00 11 00111111111 1 11222 3447
Q ss_pred HHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 145 YRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 145 yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
|.......+|.++ ++|++++++|+..|.......-++-++.+.|. +.++.+.++.|-.+|+.|-
T Consensus 199 ~lAqhyd~~g~~~-~Al~~Id~aI~htPt~~ely~~KarilKh~G~------------~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 199 FLAQHYDYLGDYE-KALEYIDKAIEHTPTLVELYMTKARILKHAGD------------LKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHhCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhCChhhH
Confidence 7788888899986 89999999999999999999999999999986 4555555555555555554
No 98
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.47 E-value=0.0061 Score=67.00 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=138.8
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
-.+.. ++|+++.+.+|...|++...|-..|.+..+++. ++.+...|..-++..|.+...|.--.-+=
T Consensus 663 ~ld~~-eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~------------ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 663 YLDNV-EEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN------------IEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred HhhhH-HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH------------HHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 34555 799999999999999999999999999999863 67777888888888888888886544444
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh---
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK--- 192 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~--- 192 (450)
.+-+ .+-++-..++++.-.+|+|.--|--...+=.+.|..+ .+=....+++...|++--.|.--.++-.+-.+..
T Consensus 730 Ek~~-~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~-~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDG-QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE-QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhc-chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 4442 5667788888888888888888877666655666654 3334567788888888888877766654433210
Q ss_pred -----ccCcc----------chhchHHHHHHHHHHHHHhCCCCcchHH--HHHHHHcccccCCCCcc---cccCCCCCCc
Q 013048 193 -----VEGFV----------SKEKVLPDEYEFVHQAIFTDPDDQSGWF--YHLWLLDQTVRVDSPQL---VSSWPTPGSD 252 (450)
Q Consensus 193 -----~~g~~----------~~~~ileeELe~v~~AI~~dP~deSaW~--Y~r~LL~~~~~~~~~~~---~~~~~~~~~~ 252 (450)
.+... =.+..++.+.+.+.+|+..+|++-.+|. |+-.+...+...-.... +.|=|.||..
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcH
Confidence 11100 0234579999999999999999888774 43333333221111111 4555777744
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00078 Score=51.56 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
.+++++..++.++..+|++..+|...+.++...+ .+++++..++++++.+|.|
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-RYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCC
Confidence 5888999999999999999999999988888874 8888999999999988876
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.38 E-value=0.0048 Score=70.75 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCc-ch-----hhhhHHHHHH
Q 013048 20 KAEKLRVLQSQFLHNH-HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDP-DS-----LKSILDEELR 92 (450)
Q Consensus 20 ~~~k~~~l~~~~~~~~-~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dp-e~-----~~~~~~eEL~ 92 (450)
|...+-....++.... ..+++ +++++.++.++..+|+...+|.+.+.+..+.+....... .. ....+ ....
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence 4444455556666666 77888 899999999999999999999999997666653211100 00 01223 4456
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhcc
Q 013048 93 VVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (450)
Q Consensus 93 ~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~np 172 (450)
++..++...+.+-.|-...+-++.+++ ..++.++.++++|+.||.|..|-++-+..+... .. +++++++.+++....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g-~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL-~KA~~m~~KAV~~~i 180 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLN-ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK-EKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHH
Confidence 666666667777789999999999995 889999999999999999999999999998877 33 467777776666432
Q ss_pred --------------------CChhHHHH-HHHHHHHhhhhhccCc-----c--chhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 173 --------------------SNYSAWHN-RSLLLSNLLKRKVEGF-----V--SKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 173 --------------------sNySAW~y-R~~LL~~L~~~~~~g~-----~--~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
.+..-+.+ ...++..++.....++ . ...+-+.+.++.++.+|..+|.|.-+-
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 22222111 1111111110000000 0 112346789999999999999987653
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.019 Score=61.24 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=96.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHH
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW 108 (450)
+.-.+....|.+ ++|++.+..+|...|+|...|-.+..++...++ ..++++.+.+++..+|.++-.|
T Consensus 311 G~A~~~~~~~~~-d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk------------~~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 311 GRALQTYLAGQY-DEALKLLQPLIAAQPDNPYYLELAGDILLEANK------------AKEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHHhccc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCccHHH
Confidence 444455667778 688888888888888888888888888877763 6888888888888888888888
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHH
Q 013048 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (450)
Q Consensus 109 ~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk 166 (450)
...+-.|.+++ .+++++..++..+..+|.|...|.+-......+|.-. ++...+-+
T Consensus 378 ~~~a~all~~g-~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~-~a~~A~AE 433 (484)
T COG4783 378 LNLAQALLKGG-KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA-EALLARAE 433 (484)
T ss_pred HHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH-HHHHHHHH
Confidence 88888888874 7778888888888888888888888888888887654 33333333
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.30 E-value=0.0085 Score=66.70 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~k 117 (450)
...++++.-+..++=.+.|-....|+-||.++...+ ...++...+..++..||....+-.--+-++.+
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~------------~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG------------QLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH------------hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344478888888888999999999999998887775 47999999999999999999999999999988
Q ss_pred CC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 118 GH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 118 l~-~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
.+ ..+...-.+...++++||.|..||.|-+-+++..|... ++-+|+..++...+++.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~-~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK-QAAECFQAALQLEESNP 788 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH-HHHHHHHHHHhhccCCC
Confidence 75 33445555888899999999999999999999999996 89999999999988874
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.0012 Score=53.51 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=46.7
Q ss_pred cCCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPE--LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd--~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
+|.| ++|+..+++++...|. +..+|...+.++...+ .+.+++.++++ +..+|++..+....+-+
T Consensus 2 ~~~y-~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~------------~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNY-ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG------------KYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-H-HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT------------HHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC------------CHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 4555 5666666666666663 4455555666666554 35666666666 65666665555555666
Q ss_pred HHhCCCChHHHHHHHHH
Q 013048 115 LSKGHSSIDNELRLLDK 131 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k 131 (450)
+.+++ .++++++.+.+
T Consensus 68 ~~~l~-~y~eAi~~l~~ 83 (84)
T PF12895_consen 68 LLKLG-KYEEAIKALEK 83 (84)
T ss_dssp HHHTT--HHHHHHHHHH
T ss_pred HHHhC-CHHHHHHHHhc
Confidence 66663 66666666554
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.24 E-value=0.005 Score=70.62 Aligned_cols=124 Identities=11% Similarity=-0.031 Sum_probs=100.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChH-------
Q 013048 51 LLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSID------- 123 (450)
Q Consensus 51 ~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~------- 123 (450)
+..+.|.+..||-.--.+....+ .+++++..|+.++..+|+...+|++.+.+..+.. .+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~------------~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~-~~~~~~lv~~ 89 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSEN------------LTDEAKDICEEHLKEHKKSISALYISGILSLSRR-PLNDSNLLNL 89 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc-chhhhhhhhh
Confidence 34467888888877666654443 4899999999999999999999999999776543 111
Q ss_pred ----------HHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 013048 124 ----------NELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (450)
Q Consensus 124 ----------eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L 188 (450)
..++++...+...+.|-.|-...+.++.++|... +.++.++++++.||.|..+.++-+..+...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~-ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK-KLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 4455555555556777799999999999999996 899999999999999999999999988776
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0012 Score=51.47 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=56.1
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~ 109 (450)
.+++.| ++|++.++.+|.++|++..+|..++.++..+++ +.+++..++.++..+|.+..+=.
T Consensus 6 ~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~------------~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 6 LQQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLGR------------YEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HhCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc------------HHHHHHHHHHHHHHCCCcHHHHH
Confidence 456778 899999999999999999999999999999974 89999999999999998877543
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0037 Score=70.93 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
++||++|.++|..+|+|..|=|.-+.+|-..+ .+.+++..+.++..--.+++.+|.+-+.|+-..+ .
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg------------~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~-q 695 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKG------------RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG-Q 695 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhcc------------CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH-H
Confidence 79999999999999999999999999998886 4899999999999877789999999999998774 8
Q ss_pred hHHHHHHHHHHHHhCC--CChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 122 IDNELRLLDKFQKADS--RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dp--kNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
|..+++.|..+++..- .+++.-+|-+-++-.-+.+. +..+....++...|+|++.-++++.+++++..
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~-eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ-EAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 9999999999998543 35677777777766666664 78899999999999999999999999998874
No 107
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.007 Score=63.57 Aligned_cols=187 Identities=14% Similarity=0.053 Sum_probs=131.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------C-----cch-------hhhhHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------D-----PDS-------LKSILDEELRV 93 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------d-----pe~-------~~~~~~eEL~~ 93 (450)
..|.+ .++...+++++.+||...++---=+.+|..-++++.. + |=. -.+.++.+|.+
T Consensus 244 ~~Gdn-~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 244 YNGDY-FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhcCc-hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 35888 7889999999999999988877767777666543321 0 000 12779999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHH-------------------HHHHcC
Q 013048 94 VESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRF-------------------VAASMN 154 (450)
Q Consensus 94 ~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~-------------------vl~~L~ 154 (450)
.+++|..+|.+.++..-++-+|..++ +.+.++-.|..++.+-|..-.+ |+|. +++.++
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~-R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALE-RHTQAVIAFRTAQMLAPYRLEI--YRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhcc-chHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999885 6666666666666655533222 2222 222221
Q ss_pred c------------------ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhcc---------------------C
Q 013048 155 R------------------SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE---------------------G 195 (450)
Q Consensus 155 ~------------------~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~---------------------g 195 (450)
. ..|++-.++++.+.++|.---|-.-..-|+..=+++.+. .
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGD 479 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHH
Confidence 1 136788899999999999888877777666544433210 0
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCcchHHH
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~deSaW~Y 226 (450)
+....+.++++++.|..|+.+||+|+.+---
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 1123456899999999999999999987643
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.21 E-value=0.0059 Score=69.57 Aligned_cols=150 Identities=9% Similarity=0.055 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-
Q 013048 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH- 119 (450)
Q Consensus 41 seeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~- 119 (450)
...+|..+-++|.++|...-+|-+-|.+....- +...+.+|+++|...+|..+.+|..-.-..-...
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~------------Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD------------DMKRAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 578888888889999999999988888776653 3567777777777777777777766543333221
Q ss_pred ----------------------------------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHH
Q 013048 120 ----------------------------------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (450)
Q Consensus 120 ----------------------------------~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~d 165 (450)
.....++.-+..++..||++|.+|.--+-+...-|++. .+++-++
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~-~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS-HALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee-hHHHhhh
Confidence 12345666666667777777777777666666666665 5677667
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 166 DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 166 k~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
++...+|.+-.+=+....+..-++. |+++++.+...|.
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd~Gk------------Ykeald~l~~ii~ 658 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECDNGK------------YKEALDALGLIIY 658 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHH
Confidence 7777776665555555555555544 5566655555443
No 109
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.20 E-value=0.03 Score=58.55 Aligned_cols=170 Identities=14% Similarity=0.011 Sum_probs=113.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC---------
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK--------- 103 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK--------- 103 (450)
-....|++ ++|++.+++++..+|++..+......++...++ +++++..+..+.+..+.
T Consensus 162 l~l~~g~~-~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------------w~~a~~~l~~l~k~~~~~~~~~~~l~ 228 (398)
T PRK10747 162 IQLARNEN-HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------------WSSLLDILPSMAKAHVGDEEHRAMLE 228 (398)
T ss_pred HHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34467888 788999999999999998888877777766652 44444444444433333
Q ss_pred ---------------------------------ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 013048 104 ---------------------------------SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (450)
Q Consensus 104 ---------------------------------ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl 150 (450)
+..+...-.-.+... +..+++.+.+.+.++..+ +.....-...+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~-g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~ 306 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC-DDHDTAQQIILDGLKRQY-DERLVLLIPRLK 306 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC-CHHHHHHHhhcc
Confidence 333433333333333 367888999999888433 333322222221
Q ss_pred HHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 013048 151 ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (450)
Q Consensus 151 ~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~L 230 (450)
.+.+ .+.++..+++++.+|+|.......+.+....+ .+.++.+.+..++..+|++.. +....-+
T Consensus 307 --~~~~-~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~------------~~~~A~~~le~al~~~P~~~~-~~~La~~ 370 (398)
T PRK10747 307 --TNNP-EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG------------EWQEASLAFRAALKQRPDAYD-YAWLADA 370 (398)
T ss_pred --CCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCCCHHH-HHHHHHH
Confidence 1444 47899999999999999988887787776654 379999999999999998765 3344444
Q ss_pred Hcc
Q 013048 231 LDQ 233 (450)
Q Consensus 231 L~~ 233 (450)
+.+
T Consensus 371 ~~~ 373 (398)
T PRK10747 371 LDR 373 (398)
T ss_pred HHH
Confidence 444
No 110
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.16 E-value=0.0044 Score=67.84 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
++|..-|++.+.+|+..|+....-.-+|-.|..++ .-+++..++...+..|++..-||+=-|.+.+.-..|. ++++||
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~-eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD-EAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH-HHHHHH
Confidence 57899999999999999999999999999999885 7899999999999999999999999999888888887 899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
..++...|.|-+.|.-.+.|--+|+.
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 99999999999999998888777765
No 111
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.15 E-value=0.0082 Score=59.85 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=81.1
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC---ChHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---SYGAW 108 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK---ny~AW 108 (450)
..+|.| ++|+..+..+|..+|+. ..++.+.+.++...+ .+++++..+..++..+|+ .+.+|
T Consensus 154 ~~~~~y-~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g------------~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 154 QDKSRQ-DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG------------KKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HhcCCH-HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 446888 79999999999999998 479999999888876 489999999999987665 68889
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 013048 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (450)
Q Consensus 109 ~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhA 142 (450)
...+.++..++ .+++++..++++++.+|.+..+
T Consensus 221 ~klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHH
Confidence 88888888774 8999999999999999987765
No 112
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.15 E-value=0.0017 Score=68.89 Aligned_cols=70 Identities=13% Similarity=-0.003 Sum_probs=56.6
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHhCCCChHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA---WHHRKWILSKGHSSIDNELRLLD 130 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~A---W~hR~wvL~kl~~~~~eEL~~~~ 130 (450)
.+|+++.+|+.++.++..++ .|++++.+++++|.++|.+..+ |+++..++.+++ .++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG------------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG------------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 67888888888888888876 3788888888888888888754 888888888874 7888888888
Q ss_pred HHHHhC
Q 013048 131 KFQKAD 136 (450)
Q Consensus 131 k~L~~d 136 (450)
+++++.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 888873
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.11 E-value=0.056 Score=57.77 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
|.-..+|+.+.......+ .+++++..++.++...|+|.-.|..+.-++.+.+ ...++++.+++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~------------~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n-k~~~A~e~~~kal~l 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAG------------QYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN-KAKEAIERLKKALAL 369 (484)
T ss_pred ccchHHHHHHHHHHHHhc------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc
Confidence 888889988877666655 4789999999999999999999999999998875 889999999999999
Q ss_pred CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc-----cchhchHHHHHHHH
Q 013048 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF-----VSKEKVLPDEYEFV 210 (450)
Q Consensus 136 dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~-----~~~~~ileeELe~v 210 (450)
+|.+.-.|...+.++-..|.+. +.+...++.+..+|.|.-.|.+.......+++...... ......+++++++.
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~-eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQ-EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChH-HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999997 89999999999999999999999999888876321100 00112356667776
Q ss_pred HHHHHhCCCCcchH
Q 013048 211 HQAIFTDPDDQSGW 224 (450)
Q Consensus 211 ~~AI~~dP~deSaW 224 (450)
..|-...--+.-.|
T Consensus 449 ~~A~~~~~~~~~~~ 462 (484)
T COG4783 449 MRASQQVKLGFPDW 462 (484)
T ss_pred HHHHHhccCCcHHH
Confidence 66665554444444
No 114
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.05 E-value=0.002 Score=68.45 Aligned_cols=70 Identities=7% Similarity=0.018 Sum_probs=65.3
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh---hhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH---AWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 100 ~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh---AW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
.+|+++.+|++++.++.+++ +|++++.+|+++|+++|.+.. +|++++.++..+|..+ ++++++.++|+..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d-EAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK-KAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc
Confidence 69999999999999999984 999999999999999999984 5999999999999986 8999999999974
No 115
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.98 E-value=0.027 Score=58.96 Aligned_cols=115 Identities=5% Similarity=-0.119 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh--hhhhHHHHHHHHcCcChHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAW--HHRKWILSKGHSSIDNELRLLDKFQKADSRNF--HAWNYRRFVAASMNRSEEDE 160 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW--~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy--hAW~yR~~vl~~L~~~~eeE 160 (450)
+.++++++..+++++.+|++.... ..+....... ...+..++.++++++.+|.|. ..-..-+|+.-+.+.+. ++
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~-~A 354 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI-EA 354 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH-HH
Confidence 468999999999999999997653 3333333222 356789999999999999999 77778899999999986 89
Q ss_pred HHHHH--HHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH
Q 013048 161 LKYTE--DMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (450)
Q Consensus 161 Le~~d--k~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI 214 (450)
.++++ .+++.+|++..+. +.+.++..++. .+++.+++.+++
T Consensus 355 ~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~------------~~~A~~~~~~~l 397 (409)
T TIGR00540 355 ADAFKNVAACKEQLDANDLA-MAADAFDQAGD------------KAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC------------HHHHHHHHHHHH
Confidence 99999 6888999988755 77888888775 355666666554
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.0028 Score=48.63 Aligned_cols=63 Identities=24% Similarity=0.166 Sum_probs=56.3
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
+.+|.| ++|+..+.+++..+|++..++.....++...+ .++++...+++++..+|++..+|.-
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQG------------QYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-------------HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888 89999999999999999999999999999987 4899999999999999998666643
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.90 E-value=0.012 Score=65.20 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------------CcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------------DPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------------dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
+|=.+..+.|+ +|....+|-.+|-++....-++.+ .+-...+.|.+..+.++..+++||-..+
T Consensus 442 kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 442 KAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG 520 (777)
T ss_pred hHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence 44444455555 777777888888777655322210 0111236799999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
.|+.++-+--++. .++.+..+|.+++..+|.|+.+|++-.-..-.++.-. ++.....++++.|-.|--.|-+-..+..
T Consensus 521 ~wf~~G~~ALqle-k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~-ra~~~l~EAlKcn~~~w~iWENymlvsv 598 (777)
T KOG1128|consen 521 TWFGLGCAALQLE-KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK-RAFRKLKEALKCNYQHWQIWENYMLVSV 598 (777)
T ss_pred HHHhccHHHHHHh-hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH-HHHHHHHHHhhcCCCCCeeeechhhhhh
Confidence 9999998888884 8899999999999999999999999988888777664 6888888999988777777777666666
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHH
Q 013048 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (450)
Q Consensus 187 ~L~~~~~~g~~~~~~ileeELe~v~~AI 214 (450)
.++. .+++++.+++.+
T Consensus 599 dvge------------~eda~~A~~rll 614 (777)
T KOG1128|consen 599 DVGE------------FEDAIKAYHRLL 614 (777)
T ss_pred hccc------------HHHHHHHHHHHH
Confidence 5543 456666655544
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.85 E-value=0.016 Score=66.27 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=103.0
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
......+.+| +++|+.+.++|..+|++|.||..-|.++-.++. ..+++-+.|-.+.+.+|++.-||.+
T Consensus 9 Ak~al~nk~Y-eealEqskkvLk~dpdNYnA~vFLGvAl~sl~q-----------~le~A~ehYv~AaKldpdnlLAWkG 76 (1238)
T KOG1127|consen 9 AKDALRNKEY-EEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQ-----------DLEKAAEHYVLAAKLDPDNLLAWKG 76 (1238)
T ss_pred HHHHHhhccH-HHHHHHHHHHHhcCCCcchhhhHHHHHHHhccC-----------CHHHHHHHHHHHHhcChhhhHHHHH
Confidence 3455567899 999999999999999999999999999999873 4688999999999999999999999
Q ss_pred HHHHHHhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH-cCc------------ChHHHHH-HHHHHHHhccCC
Q 013048 111 RKWILSKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS-MNR------------SEEDELK-YTEDMICNNFSN 174 (450)
Q Consensus 111 R~wvL~kl~--~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~-L~~------------~~eeELe-~~dk~I~~npsN 174 (450)
-.-+..+.+ ..+++.-.+|.+++.+.++-- -+++..+.+ ++. .+..|+- +-....+.||.-
T Consensus 77 L~nLye~~~dIl~ld~~~~~yq~~~l~le~q~---~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~~k 153 (1238)
T KOG1127|consen 77 LGNLYERYNDILDLDRAAKCYQRAVLILENQS---KNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNPKK 153 (1238)
T ss_pred HHHHHHccchhhhhhHhHHHHHHHHHhhhhhh---hhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCHHH
Confidence 888888743 346788888888877776543 222222221 111 0112333 333667778888
Q ss_pred hhHHHHHHHHHH
Q 013048 175 YSAWHNRSLLLS 186 (450)
Q Consensus 175 ySAW~yR~~LL~ 186 (450)
..+|.-.+.++.
T Consensus 154 ~~a~~rl~Qi~l 165 (1238)
T KOG1127|consen 154 FWAFCRLGQIQL 165 (1238)
T ss_pred HHhhCchHHHHh
Confidence 877776666654
No 119
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.84 E-value=0.0034 Score=50.75 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHhCCC--ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 121 SIDNELRLLDKFQKADSR--NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpk--NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
.+++++.+++++++.+|. +...|.+.+.++-..+.+. ++++.+++ ++.++.+.......+.++..++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~-~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYE-EAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHH-HHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHH-HHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 344555555555555553 2334444555555555553 45555544 4445544444444444444444
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.82 E-value=0.0041 Score=48.38 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhA 142 (450)
.+++++++++.++..+|.++.+|..++.++..++ .++++++.++++++.+|.+-.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLG-RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCcHHH
Confidence 4677777777777777777777777777777764 7777777777777777765443
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.076 Score=57.72 Aligned_cols=137 Identities=9% Similarity=-0.034 Sum_probs=90.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
+..+.| .+-+++++.+|+++|=|..+.-.+=-+|..++. -.+=+.+--++....|++...|.--+--
T Consensus 255 y~~c~f-~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~------------~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 255 YYGCRF-KECLKITEELLEKDPFHLPCLPLHIACLYELGK------------SNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHcChH-HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcc------------cchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 344566 899999999999999998888877667777763 1222344555666777777777655544
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
..-. +.+.++-.++-|+..+||..-.||-+-+..+..-+..+ .++.++..+-+.-|.-+-...|.|.=..
T Consensus 322 Yl~i-~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Ehd-QAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 322 YLMI-GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD-QAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred HHHh-cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHH-HHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 4444 36677777777777777777777777776666555543 5666666666665555555555544433
No 122
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.021 Score=59.74 Aligned_cols=73 Identities=25% Similarity=0.120 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH
Q 013048 20 KAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99 (450)
Q Consensus 20 ~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~ 99 (450)
.+.++....+..+-..+.+.| .+|+..++++|.+.|+|.-|-..|++++..++ .|+.++..+.++++
T Consensus 253 ~~~k~~~~lNlA~c~lKl~~~-~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~------------e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 253 EALKLACHLNLAACYLKLKEY-KEAIESCNKVLELDPNNVKALYRRGQALLALG------------EYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhHHHHHHHhhhhH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc------------cHHHHHHHHHHHHH
Confidence 333444444444444444555 35555555555555555555555555555544 24555555555555
Q ss_pred hCCCCh
Q 013048 100 QNFKSY 105 (450)
Q Consensus 100 ~nPKny 105 (450)
.+|.|-
T Consensus 320 ~~P~Nk 325 (397)
T KOG0543|consen 320 LEPSNK 325 (397)
T ss_pred hCCCcH
Confidence 555553
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.64 E-value=0.38 Score=50.30 Aligned_cols=188 Identities=10% Similarity=-0.034 Sum_probs=112.8
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYR-KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~R-r~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR 111 (450)
...+.|++ +++.+.+.++...+|++..+-..+ .++....+ .+++++..+++++..+|++..+....
T Consensus 127 aA~~~g~~-~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g------------~~~~Al~~l~~~~~~~P~~~~al~ll 193 (398)
T PRK10747 127 AAQQRGDE-ARANQHLERAAELADNDQLPVEITRVRIQLARN------------ENHAARHGVDKLLEVAPRHPEVLRLA 193 (398)
T ss_pred HHHHCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33578888 899999999999999987654434 44444333 58999999999999999999998888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhh---HHHH---HHHHcCcChHHHHH-HHHHHHHhccCChhHHHHHHHH
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWN---YRRF---VAASMNRSEEDELK-YTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~---yR~~---vl~~L~~~~eeELe-~~dk~I~~npsNySAW~yR~~L 184 (450)
.-++.+. ++++++++.+.++.+..+.+-.... .+.+ +-........+.+. ..+..-...|.+..+..-....
T Consensus 194 ~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 194 EQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 8777776 4888888888888776665433222 1111 11111111111111 1111112223344333333333
Q ss_pred HHHhhhhhc----------cCcc---------chhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 185 LSNLLKRKV----------EGFV---------SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 185 L~~L~~~~~----------~g~~---------~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
+...+.... .... ...+-..+.++.+.+++..+|+|......+..++...
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 333222110 0000 0112357899999999999999998887766666543
No 124
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.072 Score=58.19 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC--
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-- 103 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK-- 103 (450)
.+...+-.--++|+| ++|++...++|.++|+..+|..++--+|.++. .|+++|.+ ++.++.
T Consensus 14 ~l~t~ln~~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~------------ky~~ALk~----ikk~~~~~ 76 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALIQLD------------KYEDALKL----IKKNGALL 76 (652)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh------------HHHHHHHH----HHhcchhh
Confidence 444455455578999 89999999999999999999999988888775 48888844 444552
Q ss_pred ChHHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhH
Q 013048 104 SYGAW-HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA 177 (450)
Q Consensus 104 ny~AW-~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySA 177 (450)
.+... .+|..|..+++ ..+++|..++ ..|+..--.-.-|+.++-++++|+ +.++-|..+++.+-.++..
T Consensus 77 ~~~~~~fEKAYc~Yrln-k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yd-ealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 77 VINSFFFEKAYCEYRLN-KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYD-EALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred hcchhhHHHHHHHHHcc-cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCCchHHH
Confidence 22222 68888888885 7888998888 233333346677888888888886 6888888777777666554
No 125
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.085 Score=55.32 Aligned_cols=94 Identities=12% Similarity=-0.015 Sum_probs=73.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 110 hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
+-..+..++. .|..++..|+++|+++|+|.-|-+.|+.++..++.++ .+...+.++++.+|+|-.+=.....|-++..
T Consensus 262 NlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~-~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 262 NLAACYLKLK-EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYD-LARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHHhhh-hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 3456666774 8899999999999999999999999999999999996 7999999999999999776555555544443
Q ss_pred hhhccCccchhchHHHHHHHHHHHHHh
Q 013048 190 KRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (450)
Q Consensus 190 ~~~~~g~~~~~~ileeELe~v~~AI~~ 216 (450)
. ..+.|=+.|.+++..
T Consensus 340 ~-----------~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 340 E-----------YEEKEKKMYANMFAK 355 (397)
T ss_pred H-----------HHHHHHHHHHHHhhc
Confidence 2 245566666666543
No 126
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.046 Score=58.14 Aligned_cols=180 Identities=13% Similarity=0.023 Sum_probs=135.4
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
....+++|.| +.|++.....=..+.+...|-...-.+|..+.. ..++-++-.+.+.++.++-=|..|-.+
T Consensus 426 a~~~lk~~d~-~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---------gk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 426 AGELLKNGDI-EGAIEILKVFEKKDNKTASAAANNLCALRFLQG---------GKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred HHHHHhccCH-HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---------ccchhHHHHHHHHHhcccccCHHHhhc
Confidence 3355567777 666666655555555555544444344444421 135778888999999988888888887
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
++-+.... +.+++++++|..+|.-|...-.|..+-+...+.++..+ ++|+|+-++-.+--+|.....+...+...|..
T Consensus 496 kgn~~f~n-gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld-eald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 496 KGNIAFAN-GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD-EALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCceeeec-CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 77776655 58999999999999999999999988888888888886 79999988877777777777776666665543
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
-..+|+.+.++..+-|+|+..-.-+.-|.++-
T Consensus 574 ------------~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 574 ------------PAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred ------------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 37799999999999999999988888888774
No 127
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.50 E-value=0.45 Score=40.61 Aligned_cols=156 Identities=26% Similarity=0.217 Sum_probs=115.9
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC---ChHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKL-AVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK---SYGAWHHRK 112 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~-iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK---ny~AW~hR~ 112 (450)
.+.+ .+++..+..++..++.....+.+... ++...+ .+.+++..+.+++..+|. .......+.
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 108 LGKY-EEALELLEKALALDPDPDLAEALLALGALYELG------------DYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HhhH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 3445 68888888888888888666666666 565554 478899999999887773 334444444
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSR-NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpk-NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
..+... +.++.++..+.+++...+. ...++...+......+.+. .++..+..++...|.....+......+. ...
T Consensus 175 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 250 (291)
T COG0457 175 ALLEAL-GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE-EALEYYEKALELDPDNAEALYNLALLLL-ELG- 250 (291)
T ss_pred hHHHHh-cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH-HHHHHHHHHHhhCcccHHHHhhHHHHHH-HcC-
Confidence 443333 4788999999999999998 6888888888888777664 7888999999999886666777766666 321
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCC
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~dP~ 219 (450)
.+.+....+.+++..+|.
T Consensus 251 ----------~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 ----------RYEEALEALEKALELDPD 268 (291)
T ss_pred ----------CHHHHHHHHHHHHHhCcc
Confidence 268888899999999997
No 128
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.47 E-value=0.019 Score=54.37 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC---------hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS---------EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~---------~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
++.+.+-+......||.+..++++-+-+|..|..+ .++++.-++++|.+||..+.|....|..+..+....
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45677777777788888888888888777776432 257888889999999999999999999988877532
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
.. ....++.++++.++|++|...+|+|+..+
T Consensus 87 ~d-~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PD-TAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CC-hHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 11 11234668999999999999999999533
No 129
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.47 E-value=0.014 Score=56.32 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHhCCCChh-----hhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 121 SIDNELRLLDKFQKADSRNFH-----AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyh-----AW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
.|+++..-|..+|++.|.-+. ++.+|+.++-+++.+. .+++-|.++|+++|.+.-|.--|..+..++.++
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e-~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWE-SAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHH-HHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 555555555555555554332 4667888888888875 899999999999999999999999999988654
No 130
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.40 E-value=0.046 Score=54.52 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC---ChhHH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFS---NYSAW 178 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy---hAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps---NySAW 178 (450)
-..++....-+....+.|++++..|+++++.+|.+- .|+...+.++...+.+. +++..+.++++.+|. ...+|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~-~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD-DAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCCcchhHHH
Confidence 467777765542222479999999999999999884 68888888888888886 899999999988776 56788
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 179 ~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
...+.++..++. +.+++..+.+++..+|+...+
T Consensus 221 ~klg~~~~~~g~------------~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGD------------TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHH
Confidence 888888776654 689999999999999987743
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.40 E-value=0.035 Score=61.79 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=107.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
+++| +++.+.++..+++||-....|..+|-+-.++++ ++.+.+.|-.++...|.+..+|++-.-...
T Consensus 498 ~~~f-s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek------------~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 498 NKDF-SEADKHLERSLEINPLQLGTWFGLGCAALQLEK------------EQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred chhH-HHHHHHHHHHhhcCccchhHHHhccHHHHHHhh------------hHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 5778 799999999999999999999999999888874 799999999999999999999999988877
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~ 170 (450)
+++ .-.++......+++.+-.|...|-+-.-+....|.++ ++++.|.+.+..
T Consensus 565 ~~~-~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e-da~~A~~rll~~ 616 (777)
T KOG1128|consen 565 RLK-KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE-DAIKAYHRLLDL 616 (777)
T ss_pred HHh-hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH-HHHHHHHHHHHh
Confidence 774 6678999999999999999999999999999998886 899998887653
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.33 E-value=0.098 Score=55.25 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~k 117 (450)
+.+ ++|+++++++...+|+.. ..-.+++.... .-.+++++..++|+.+|.++....--.-.+..
T Consensus 183 ~~~-~~ai~lle~L~~~~pev~---~~LA~v~l~~~------------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 183 QRY-DEAIELLEKLRERDPEVA---VLLARVYLLMN------------EEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred ccH-HHHHHHHHHHHhcCCcHH---HHHHHHHHhcC------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344 677777777777777632 22222222221 12567777777777777777777666555544
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 118 l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
. ..++.+++...++.+..|.+|.+|.+-..+...++.++ ++|.
T Consensus 247 k-~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e-~ALl 289 (395)
T PF09295_consen 247 K-KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE-NALL 289 (395)
T ss_pred c-CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH-HHHH
Confidence 4 36677777777777777777777777777777777764 4553
No 133
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.22 E-value=0.26 Score=54.74 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=137.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC----------CCCcc-----------hhhhhHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN----------DSDPD-----------SLKSILDEEL 91 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~----------~~dpe-----------~~~~~~~eEL 91 (450)
++...|.- ..|..+...++..||.+-.+|...-.+......++ ...|. -.....++++
T Consensus 593 e~w~agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHH
Confidence 33445666 78999999999999999999987544433322100 01111 1235678999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
++++.+|+..|.....|.-.+.+..++. ..+.+-+.|..-++..|.....|---..+=+..+... .+-...+++.-.|
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~-rAR~ildrarlkN 749 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV-RARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh-hHHHHHHHHHhcC
Confidence 9999999999999999999999998874 7788888899889999999999887766666666554 5666778888899
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 172 psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
|.|.-.|.-.-.+=.+++. .+.+=..+.+|+...|+.--.|.---|+...
T Consensus 750 Pk~~~lwle~Ir~ElR~gn------------~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGN------------KEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred CCcchhHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 9999888654443333332 4566677889999999999999887777654
No 134
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.22 E-value=0.66 Score=39.59 Aligned_cols=170 Identities=24% Similarity=0.178 Sum_probs=125.3
Q ss_pred hcCCCcHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLE--TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~--~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
..+.+ .+++..+...+. ..+....++...+.....++ .+.+++..+..++..++.+...+.+...
T Consensus 71 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 71 KLGRL-EEALELLEKALELELLPNLAEALLNLGLLLEALG------------KYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred HcccH-HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 44555 677777777776 78888888888888777775 3789999999999988888777777777
Q ss_pred -HHHhCCCChHHHHHHHHHHHHhCCC---ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC-ChhHHHHHHHHHHHh
Q 013048 114 -ILSKGHSSIDNELRLLDKFQKADSR---NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS-NYSAWHNRSLLLSNL 188 (450)
Q Consensus 114 -vL~kl~~~~~eEL~~~~k~L~~dpk---NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps-NySAW~yR~~LL~~L 188 (450)
++... +.++.++..+.+++..+|. .......+.......+.+. +.+..+.+++...+. ...++...+..+...
T Consensus 138 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYEL-GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE-EALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHc-CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH-HHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 67666 4899999999999887773 3344444444444445554 789999999999998 577777777776655
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 189 ~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
+. +.+++..+..++...|.....+......+.
T Consensus 216 ~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 216 GK------------YEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred cc------------HHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 42 688999999999999985555544444443
No 135
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.22 E-value=0.025 Score=53.53 Aligned_cols=73 Identities=14% Similarity=0.022 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
+.|.+.++.....||.+..+++.=+.+|..+.. -.........+++++.=++.||.+||+...|-..-+-.+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAq--fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQ--FKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 567888999999999999999999999999953 1111223357899999999999999998887765555554
No 136
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.21 Score=53.31 Aligned_cols=168 Identities=12% Similarity=0.020 Sum_probs=98.5
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
+|.| ++|++.|..+|.-+..+..|...-+.....++ .++++|+|+-++-.+--.|.++-+.-.-+..
T Consensus 503 ngd~-dka~~~ykeal~ndasc~ealfniglt~e~~~------------~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 503 NGDL-DKAAEFYKEALNNDASCTEALFNIGLTAEALG------------NLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred cCcH-HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc------------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3666 67777777777777777777777666666665 3666666666654444445555554444444
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc---------------------------------ChHHHHHH
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR---------------------------------SEEDELKY 163 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~---------------------------------~~eeELe~ 163 (450)
-+. ....+++++-++-..-|.+....+--+-+..+-|. +.++.+.|
T Consensus 570 ~le-d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLE-DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred Hhh-CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 442 33456666666555555554444433333333221 12456666
Q ss_pred HHHHHHhccCChhHHHHH-HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 164 TEDMICNNFSNYSAWHNR-SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 164 ~dk~I~~npsNySAW~yR-~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
++++--+.|. .+-|.-. ..++.+- .-|+++++.|...-+..|+|-.+--|+-.+.
T Consensus 649 ~ekaaliqp~-~~kwqlmiasc~rrs------------gnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 649 FEKAALIQPN-QSKWQLMIASCFRRS------------GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHhcCcc-HHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 6665555553 3445322 1122222 2389999999999999999988876655544
No 137
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.13 E-value=0.019 Score=43.90 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW 143 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW 143 (450)
+.+++++..+++++..+|++..++.....++.+.+ .++++.+.+++++..+|.|...|
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-QYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--HHHHHHHHHCCHGGGTTHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCHHHHH
Confidence 35788888888888888888888888888888774 78888888888888888764443
No 138
>PRK15331 chaperone protein SicA; Provisional
Probab=96.09 E-value=0.1 Score=48.68 Aligned_cols=81 Identities=9% Similarity=-0.061 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHH
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk 166 (450)
++++..++..+...+|-++.-|..-+-+.+.++ .|++++.+|..+..+++.|+..-.|-+.+.-.++... .+..++..
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~-~A~~~f~~ 130 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA-KARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH-HHHHHHHH
Confidence 556666666666666666665655555555542 5566666666666666666666666666665555553 45555555
Q ss_pred HHH
Q 013048 167 MIC 169 (450)
Q Consensus 167 ~I~ 169 (450)
+|.
T Consensus 131 a~~ 133 (165)
T PRK15331 131 VNE 133 (165)
T ss_pred HHh
Confidence 555
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.99 E-value=0.1 Score=53.83 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=133.1
Q ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 013048 41 SKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (450)
Q Consensus 41 seeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~ 120 (450)
.+.||..+.+.|...|.+.|.--.-.++-+.++ .++++++++..+|+.+|.|..+-.--.--... ..
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~------------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~ 338 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAME------------QQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DN 338 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH------------hHHHHHHHHHHHHhcCCccceeeeeeeecccc-CC
Confidence 378999999999999999999999999988887 37999999999999999988764311111111 13
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc--cC-ChhHHHHHHHHHHHhhhhhccCcc
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN--FS-NYSAWHNRSLLLSNLLKRKVEGFV 197 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n--ps-NySAW~yR~~LL~~L~~~~~~g~~ 197 (450)
..+-+|.+|.++|.+-..|...+.+-+.+.-.-+.++ -.|-++.+++..- |. -...|++.+++.-..+.
T Consensus 339 ~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D-~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD------- 410 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID-LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD------- 410 (478)
T ss_pred ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh-hhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-------
Confidence 5678999999999999999999999988887777776 5788888888753 32 23579999998776664
Q ss_pred chhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 198 ~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
+.-+-.|+.-++.-||+|..+.+.+.-|-.+.
T Consensus 411 -----~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 411 -----FNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred -----hHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 46677899999999999999998876665553
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.3 Score=49.46 Aligned_cols=124 Identities=9% Similarity=-0.050 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcC--cChHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN--RSEEDELK 162 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~--~~~eeELe 162 (450)
+..++-+.-.+.-|..||.+..-|.--+-+...++ ++..++..|.+++.+.|+|...|.--+-++-... ....+.-+
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~-~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALG-RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 34667778889999999999999998888888874 8999999999999999999999988777776653 23456777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
..++++..||.|..+-+|.++-...-++ |.+++......+...|.|.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~------------~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGD------------YAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccc------------HHHHHHHHHHHHhcCCCCC
Confidence 8899999999999999988887776543 7999999999999888765
No 141
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.89 Score=45.33 Aligned_cols=134 Identities=12% Similarity=0.015 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~ 122 (450)
..+....+++..+|++.++-+.-+...... .++.+++..+.++...+|++..+|+-++.++.+++ ++
T Consensus 84 ~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~------------g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-r~ 150 (257)
T COG5010 84 SSLAVLQKSAIAYPKDRELLAAQGKNQIRN------------GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-RF 150 (257)
T ss_pred chHHHHhhhhccCcccHHHHHHHHHHHHHh------------cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-Ch
Confidence 444555555555555555554433333333 35788888888888888888888888888888884 78
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 123 ~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
+.+-..|.+++++.|.+...-++-+..+--=|... .+-.++..+...-+.|...=+++..++...++
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~-~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE-DAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH-HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 88888888888888888888777776665555553 55555566555556677777777777666554
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.31 Score=49.33 Aligned_cols=121 Identities=14% Similarity=0.012 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-- 119 (450)
++.+.-.+.-|..||++..-|-.-+.+...+++ +..++..|..++++.|+|...|---.-+|....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGR------------ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 456677888899999999999999999999874 899999999999999999999998887776543
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
..-.+.-.++++++..||.|..+-.|-++-...-+.+. +++.....++...|-|-
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~-~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYA-EAAAAWQMLLDLLPADD 261 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH-HHHHHHHHHHhcCCCCC
Confidence 22357888999999999999999999999888888886 79999999999887775
No 143
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.64 E-value=0.88 Score=45.35 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~ 122 (450)
.++...-+.-..||++..+ ......+...+. -++.+....+++..+||+...-+--+-...+. +.+
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~-g~~ 116 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGD------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN-GNF 116 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhccc------------ccchHHHHhhhhccCcccHHHHHHHHHHHHHh-cch
Confidence 4777888888999999999 555555555442 24556777787888999977664433334444 589
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhch
Q 013048 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKV 202 (450)
Q Consensus 123 ~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~i 202 (450)
..++..+.++...+|.|-.+|+-++.++.++|+.+ ++=.-+.++++..|.+.+.-++.+..+.--++
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~-~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd------------ 183 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD-EARRAYRQALELAPNEPSIANNLGMSLLLRGD------------ 183 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh-HHHHHHHHHHHhccCCchhhhhHHHHHHHcCC------------
Confidence 99999999999999999999999999999999997 45566799999999999999988877654332
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 203 LPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 203 leeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
++.+-.++..+...-+.|...=..+..+.+.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 5777777778777777777777666666654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.42 E-value=1 Score=39.98 Aligned_cols=127 Identities=17% Similarity=0.029 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc-H--HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL-Y--TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~-y--tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP 102 (450)
.++..+......+.. ..+-..++.++..+|+. | .+......+....+ .++++...++.++...|
T Consensus 13 ~~y~~~~~~~~~~~~-~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g------------~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 13 ALYEQALQALQAGDP-AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG------------DYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhhCC
Confidence 344444444467777 67777899999999999 3 34444445544443 58999999999999775
Q ss_pred CC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 103 KS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 103 Kn---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
.. ..++.....++... +.+++++..++. +...+-...++..++-++...|.++ ++...|.++|
T Consensus 80 d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~-~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQ-GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYD-EARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHH-HHHHHHHHhC
Confidence 54 33555556666555 489999999976 3444555567888899999999986 7888887764
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.32 E-value=0.33 Score=42.89 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC---ChhHHH
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS---NYSAWH 179 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps---NySAW~ 179 (450)
.+++++.|++..++ ..++++.+|.+++...... ..++...+..+..+|+++ +++...++.+...|. +.....
T Consensus 2 ~~~~~~A~a~d~~G-~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d-eA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLG-REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD-EALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCccccHHHHH
Confidence 57888999999885 8899999999999965443 468888899999999997 799999999999888 777777
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 180 yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
.....|.++++ .+++++.+..++-
T Consensus 80 f~Al~L~~~gr------------~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGR------------PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCC------------HHHHHHHHHHHHH
Confidence 77777777765 4666666665553
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.01 E-value=0.42 Score=50.56 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..++.++.+++++.+.+|. ++..-.-++... ..-.+++++++++++.+|.++.......-.+-..+.++ .+++..
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~-lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE-LALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 5689999999999999986 333333333333 24568999999999999999999998888887788885 899999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVH 211 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~ 211 (450)
+++++..|++..+|.+...+.-.++. +++||-...
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d------------~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGD------------FENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCC------------HHHHHHHHh
Confidence 99999999999999999999888775 677774433
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.96 E-value=0.057 Score=52.86 Aligned_cols=84 Identities=11% Similarity=-0.039 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHH
Q 013048 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (450)
Q Consensus 90 EL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~ 169 (450)
+.--+.++|.++||-+.++++-+.-+... +.++-+++.++..+++||.+..|-.+|+..+---|++. -+.+-+.+.-.
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~-LAq~d~~~fYQ 161 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK-LAQDDLLAFYQ 161 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhc-ccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH-hhHHHHHHHHh
Confidence 44456778888888888888888777766 47888888888888888888888888887776667774 34444455556
Q ss_pred hccCCh
Q 013048 170 NNFSNY 175 (450)
Q Consensus 170 ~npsNy 175 (450)
.||+|.
T Consensus 162 ~D~~DP 167 (297)
T COG4785 162 DDPNDP 167 (297)
T ss_pred cCCCCh
Confidence 678776
No 148
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.78 E-value=0.059 Score=35.90 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
.+|.+++.+...++ .+++++.+|+++++++|.|
T Consensus 2 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG-DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHCcCC
Confidence 46777777777774 7778888888888887764
No 149
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.69 E-value=0.029 Score=38.43 Aligned_cols=28 Identities=25% Similarity=0.084 Sum_probs=24.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
+++++|+.+|+|..+|++.+.++...++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 4688999999999999999999888765
No 150
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.43 E-value=0.043 Score=37.57 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=12.5
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhC
Q 013048 94 VESALRQNFKSYGAWHHRKWILSKG 118 (450)
Q Consensus 94 ~e~aL~~nPKny~AW~hR~wvL~kl 118 (450)
++++|+.||+|+.+|+..++++...
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 3445555555555555555555444
No 151
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.38 E-value=0.056 Score=57.71 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..++.++.++.++|..+|.+...|..|....-+. ..+..++.-+.++++.+|...-|...|+-++..++.+. +++.-+
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~-e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~-~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV-ESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK-KALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheee-chhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH-HHHHHH
Confidence 5689999999999999999999999998666666 37889999999999999999999999989998888885 788888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~ 227 (450)
..+....|++..+ .+.+. ..+.+..+ +-++.++-..+++.+.=.+.
T Consensus 96 ~~~~~l~Pnd~~~-------~r~~~--------Ec~~~vs~--~~fe~ai~~~~~d~~s~~~~ 141 (476)
T KOG0376|consen 96 EKVKKLAPNDPDA-------TRKID--------ECNKIVSE--EKFEKAILTPEGDKKSVVEM 141 (476)
T ss_pred HHhhhcCcCcHHH-------HHHHH--------HHHHHHHH--HhhhhcccCCccCCcccccc
Confidence 9999999988754 11111 11111111 24567777777777666554
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=1.6 Score=46.51 Aligned_cols=180 Identities=13% Similarity=0.031 Sum_probs=108.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh-hcCCC------------CCcch------------h
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHK-LTEND------------SDPDS------------L 83 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l-~~~~~------------~dpe~------------~ 83 (450)
+.+.....-+.-+-+.-.....++...|.+.+.|-.|+-.-+.. +.... .-|++ .
T Consensus 165 ~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~ 244 (564)
T KOG1174|consen 165 QVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY 244 (564)
T ss_pred HHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh
Confidence 33333334444434455566777888888888888776533322 21000 01221 2
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHH
Q 013048 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (450)
Q Consensus 84 ~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~ 163 (450)
.+.+.++...++++...||-+..+----+.+|.+-+ .+++-=.+...++.++..-..-|.=-+.++-.-+++. .+|.|
T Consensus 245 ~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~-rAL~~ 322 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFE-RALNF 322 (564)
T ss_pred hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHH-HHHHH
Confidence 366788888899999999988888877777777653 5655555566666655444444444444433334443 67777
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc
Q 013048 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (450)
Q Consensus 164 ~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS 222 (450)
..+.|..+|++..|..-+|.+|..+++ .++++-.|..|+.+.|-+=.
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R------------~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALER------------HTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccc------------hHHHHHHHHHHHhcchhhHH
Confidence 777777777777777777777777654 35555556666666654443
No 153
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.17 E-value=2 Score=40.65 Aligned_cols=106 Identities=18% Similarity=0.077 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~y---tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP 102 (450)
.++..-.....+|+| .+|+..++.++...|... .|....+.+....+ .+.+++..++..+..+|
T Consensus 7 ~lY~~a~~~~~~g~y-~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~------------~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDY-EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG------------DYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCC
Confidence 455666677789999 899999999999988764 55555666655554 58999999999999999
Q ss_pred CChH---HHHHHHHHHHhCC----------CChHHHHHHHHHHHHhCCCChhhhh
Q 013048 103 KSYG---AWHHRKWILSKGH----------SSIDNELRLLDKFQKADSRNFHAWN 144 (450)
Q Consensus 103 Kny~---AW~hR~wvL~kl~----------~~~~eEL~~~~k~L~~dpkNyhAW~ 144 (450)
++.. |.+.++.+..... ....+++..+..++...|.+-.+-.
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 8764 6766766643321 1134667777777777777666543
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=94.14 E-value=2.6 Score=39.44 Aligned_cols=99 Identities=8% Similarity=-0.130 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC
Q 013048 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (450)
Q Consensus 22 ~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n 101 (450)
+.+-.++..-....++|.| ++|..++.-+..++|-++..|..-+-+.+.++ .|++++.++..+...+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~-~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k------------~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRL-DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK------------QFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHcc
Confidence 3445566667788899999 89999999999999999999999999988876 5999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
+++|..-.|-+.+.-.++ ..+.++.++..+++
T Consensus 102 ~~dp~p~f~agqC~l~l~-~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMR-KAAKARQCFELVNE 133 (165)
T ss_pred cCCCCccchHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 999999999999999885 88899999999888
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.10 E-value=0.14 Score=33.71 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
.+|.+.+.++.+.+ .++++++++++++.++|.|
T Consensus 2 ~~~~~lg~~~~~~~-~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG-NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCcCC
Confidence 56788888888774 8888888888888888875
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.09 E-value=0.085 Score=35.11 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.+|..++.+...++. ++++++++.+||.++|+|
T Consensus 2 ~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC------------chHHHHHHHHHHHHCcCC
Confidence 478999999988875 799999999999999974
No 157
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.04 E-value=2 Score=47.06 Aligned_cols=72 Identities=7% Similarity=0.006 Sum_probs=61.0
Q ss_pred CCChHHH--HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 102 FKSYGAW--HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 102 PKny~AW--~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
|.+.-.| ++.......+ +.++++|++++++|+..|.......-|+-++.+.|.+. ++.++.+.+-..|..|-
T Consensus 189 ~p~~~lw~~~~lAqhyd~~-g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~-~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYL-GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK-EAAEAMDEARELDLADR 262 (517)
T ss_pred CchHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCChhhH
Confidence 3344345 6667777777 48999999999999999999999999999999999986 78888899888888774
No 158
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.90 E-value=1.7 Score=47.14 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=106.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCC-cchhhhhHHHHHHHHHHHHHhCC-----
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSD-PDSLKSILDEELRVVESALRQNF----- 102 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~d-pe~~~~~~~eEL~~~e~aL~~nP----- 102 (450)
..+....+..+. +.-+++-.++|.+||++.+||..-.+ +.+. .......++++++.-+..+....
T Consensus 173 ~IMq~AWRERnp-~aRIkaA~eALei~pdCAdAYILLAE--------EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNP-QARIKAAKEALEINPDCADAYILLAE--------EEASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHhhhhhhHHHhhccc--------ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 334455555666 67799999999999999999986543 1111 11223456777777777775442
Q ss_pred -CChHHHHHH----------H--HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc---CcChHHHHHHHHH
Q 013048 103 -KSYGAWHHR----------K--WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NRSEEDELKYTED 166 (450)
Q Consensus 103 -Kny~AW~hR----------~--wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L---~~~~eeELe~~dk 166 (450)
..+..|+.| + .++.++ +..+++++.+..+++.+|.. ..-+=|..++.-+ +.+. | +..
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Ya--d---~q~ 316 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYA--D---VQA 316 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHH--H---HHH
Confidence 123444322 1 223344 58899999999999988742 2223444444433 4442 2 344
Q ss_pred HHHhccC----ChhHHHHHHHHHHHh--hhhhccCccchhc---hHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 167 MICNNFS----NYSAWHNRSLLLSNL--LKRKVEGFVSKEK---VLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 167 ~I~~nps----NySAW~yR~~LL~~L--~~~~~~g~~~~~~---ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
++.+... +..+|+|-..||+-= +.....+...+.. --..+++.+++|++.||.-. ..||+.
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp------~YLLe~ 386 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP------KYLLEM 386 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc------hhhhcc
Confidence 4444432 357899998887521 1100000001111 12458899999999999755 336765
No 159
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.89 E-value=0.14 Score=33.75 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.+|++++.++..+++ ++++++++++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHCcCC
Confidence 478999999998875 799999999999999986
No 160
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=0.61 Score=51.22 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..|++++..++++|...|+...|.+-+=.++-++ ..|+++|.+.++-......|.- ..+|.+|.-+++..+ ++|.++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrlnk~D-ealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNGALLVINSF-FFEKAYCEYRLNKLD-EALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHcccHH-HHHHHH
Confidence 5699999999999999999999987655555566 4899999776664433322222 288999999999986 688877
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
+ ..++.+--.-+-|..++.++++ |+++++-|...+.-+-+|+..= -+..++.
T Consensus 103 ~---~~~~~~~~ll~L~AQvlYrl~~------------ydealdiY~~L~kn~~dd~d~~-~r~nl~a 154 (652)
T KOG2376|consen 103 K---GLDRLDDKLLELRAQVLYRLER------------YDEALDIYQHLAKNNSDDQDEE-RRANLLA 154 (652)
T ss_pred h---cccccchHHHHHHHHHHHHHhh------------HHHHHHHHHHHHhcCCchHHHH-HHHHHHH
Confidence 6 4566666688889999998876 7888888888877666665443 3344443
No 161
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.79 E-value=0.27 Score=51.11 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=76.6
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
.+|.| +||+++|.+.+...|-+.-....|..+..++.+ +-.+=.-|+.++..|-....|+..|+-.-
T Consensus 109 KQgKy-~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~------------FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 109 KQGKY-EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS------------FAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hccch-hHHHHHhhhhhccCCCCccchhhHHHHHHHHHH------------HHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 56888 799999999999999888888888888777753 34444566777777877777887776666
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~ 156 (450)
..+ +...++-+-|+.+|.+.|++... +..+..+..+
T Consensus 176 ~~L-g~~~EAKkD~E~vL~LEP~~~EL----kK~~a~i~Sl 211 (536)
T KOG4648|consen 176 ESL-GNNMEAKKDCETVLALEPKNIEL----KKSLARINSL 211 (536)
T ss_pred HHH-hhHHHHHHhHHHHHhhCcccHHH----HHHHHHhcch
Confidence 666 47788999999999999986554 3444445443
No 162
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.60 E-value=1.3 Score=40.56 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=70.3
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh-CCCC---hHH
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-NFKS---YGA 107 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~-nPKn---y~A 107 (450)
.+.-..|+. +.||+.+.++|.+.|+...++|.|...+.-.+ ..+++|+-.++++.. .|+- .++
T Consensus 51 valaE~g~L-d~AlE~F~qal~l~P~raSayNNRAQa~RLq~------------~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 51 IALAEAGDL-DGALELFGQALCLAPERASAYNNRAQALRLQG------------DDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHhccch-HHHHHHHHHHHHhcccchHhhccHHHHHHHcC------------ChHHHHHHHHHHHHhcCccchHHHHH
Confidence 344478888 79999999999999999999999998876554 247888888888864 3432 567
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 108 WHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 108 W~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
+..|+.+.... +.-+.+-.-|+.+..+-.+
T Consensus 118 ~vQRg~lyRl~-g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 118 FVQRGLLYRLL-GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHh-CchHHHHHhHHHHHHhCCH
Confidence 77888777766 4667777777777666544
No 163
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.94 E-value=0.11 Score=53.50 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
+...+-.+....|++ ++|++.+..+|.+||......-.|..++.++.. -..|++-|+.++.+||.+.
T Consensus 116 e~k~~A~eAln~G~~-~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k------------p~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 116 DKKVQASEALNDGEF-DTAIELFTSAIELNPPLAILYAKRASVFLKLKK------------PNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HHHHHHHHHhcCcch-hhhhcccccccccCCchhhhcccccceeeeccC------------CchhhhhhhhhhccCcccc
Confidence 344455566678888 799999999999999999999999999988864 3678889999999999988
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
..+-.|+..=.-+ +.+.++-..+..++++|-
T Consensus 183 ~~ykfrg~A~rll-g~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 183 KGYKFRGYAERLL-GNWEEAAHDLALACKLDY 213 (377)
T ss_pred cccchhhHHHHHh-hchHHHHHHHHHHHhccc
Confidence 8877776655544 477888888888777664
No 164
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.94 E-value=3.6 Score=45.04 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=99.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh----
Q 013048 33 HNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ---- 100 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~---- 100 (450)
..-.+|+| ++|..++..+|.+ .|.-.++-+.-+.++..+.. +.+++..++++|.+
T Consensus 208 ~y~~~g~~-e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k------------~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 208 MYAVQGRL-EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK------------YDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHhccH-HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHHHHHh
Confidence 33467999 8999999999999 88888888877777777653 56666666666643
Q ss_pred ----CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh--------hhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 101 ----NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH--------AWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 101 ----nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh--------AW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
||....+.+.-.-++.+. +.++++-.+|++++++..+.+- .-..-+.+...++.++ +++.++.+++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E-ea~~l~q~al 352 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE-EAKKLLQKAL 352 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHH
Confidence 333333333333344333 5889999999999987765222 2333344444555664 5677766666
Q ss_pred Hhc-----cCCh---hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 013048 169 CNN-----FSNY---SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (450)
Q Consensus 169 ~~n-----psNy---SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~ 216 (450)
++. +.|+ .--...+.++..+++ ++++.+++.+||.+
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk------------~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGK------------YKEAEELYKKAIQI 396 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcc------------hhHHHHHHHHHHHH
Confidence 643 2332 233444556666665 67777777777754
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.75 E-value=1.4 Score=43.51 Aligned_cols=78 Identities=9% Similarity=-0.050 Sum_probs=56.5
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
|+-+...++ ...-+---+.+++.+.|+-..+++|-+..+..-+.++ .+++.++..++.||.+..|--+|+.-+..-++
T Consensus 71 RGvlYDSlG-L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd-aa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 71 RGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD-AAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hcchhhhhh-HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch-HHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence 455555443 3333444567778888888888888888887778776 68888888888888888888888877766554
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.22 E-value=4.3 Score=35.86 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 013048 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (450)
Q Consensus 60 tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d 136 (450)
.++..+.+++..+|+ .++++.++++++..-... ..++...+..+..+ +.+++++..+++.+...
T Consensus 2 ~~~~~~A~a~d~~G~------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGR------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEF 68 (120)
T ss_pred chHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 356778888888874 689999999999865444 56788888888888 49999999999999998
Q ss_pred CC---ChhhhhHHHHHHHHcCcChHHHHHHHHHHHH
Q 013048 137 SR---NFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (450)
Q Consensus 137 pk---NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~ 169 (450)
|. +-....+...++..+|++. ++++.+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~-eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPK-EALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH
Confidence 88 7788888888888899986 68877666654
No 167
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.02 E-value=0.2 Score=53.68 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
.|+.++.+|.|+|+++|.+.+-|..|....-+.+.+- .+|.-..++|+.+|...-+++-|+.....+....
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~-~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG-GALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh-hHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 5788999999999999999999999987666666664 7888889999999999999888888877777643
No 168
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.92 E-value=0.32 Score=34.71 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHH
Q 013048 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (450)
Q Consensus 177 AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r 228 (450)
+|...+.++..++. ++++++.+++++..+|+|..+|..+.
T Consensus 3 ~~~~la~~~~~~G~------------~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQ------------PDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 56667777777664 79999999999999999999997643
No 169
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.86 E-value=1.1 Score=46.37 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=121.5
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..+++ ++|+++|..+|...|.|.++-..-+--. .- +..| +=+|.++.++|..-..|++.+.+-+-+-
T Consensus 302 am~~~-~~a~~lYk~vlk~~~~nvEaiAcia~~y--fY---~~~P-------E~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 302 AMEQQ-EDALQLYKLVLKLHPINVEAIACIAVGY--FY---DNNP-------EMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHHhH-HHHHHHHHHHHhcCCccceeeeeeeecc--cc---CCCh-------HHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 35777 7999999999999999877643322100 00 1123 6789999999999999999999888777
Q ss_pred HhCCCChHHHHHHHHHHHHhC---CCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 116 SKGHSSIDNELRLLDKFQKAD---SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~d---pkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
... ..++-.|.++.+++..- ..-...|++-++|.-.+|... -+-.|+.-++..|+.+..|.++.+.|-.+-+.
T Consensus 369 ~ya-qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-- 444 (478)
T KOG1129|consen 369 LYA-QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALTSDAQHGEALNNLAVLAARSGD-- 444 (478)
T ss_pred Hhh-cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH-HHHHHHHHHhccCcchHHHHHhHHHHHhhcCc--
Confidence 655 47889999999998753 345578999999988888875 57788899999999999999999887655432
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
++++-.++..|-...|+-.
T Consensus 445 ----------i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 445 ----------ILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ----------hHHHHHHHHHhhhhCcccc
Confidence 5777777777877777543
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.75 E-value=3.7 Score=36.44 Aligned_cols=113 Identities=11% Similarity=-0.062 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhCCCC-hH--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHcCcChHHH
Q 013048 87 LDEELRVVESALRQNFKS-YG--AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDE 160 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKn-y~--AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy---hAW~yR~~vl~~L~~~~eeE 160 (450)
....-..++.++..+|++ |. +.....-+.... +.++++++.++.++...|.+. -++.....++-..+.++ ++
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d-~A 104 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD-EA 104 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH-HH
Confidence 455566788999999999 33 333344444444 589999999999999875542 35555667777778886 68
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH
Q 013048 161 LKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI 214 (450)
Q Consensus 161 Le~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI 214 (450)
+..++. +...+....++..+|-++...++ ++++...|.+||
T Consensus 105 l~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~------------~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQ-IPDEAFKALAAELLGDIYLAQGD------------YDEARAAYQKAL 145 (145)
T ss_pred HHHHHh-ccCcchHHHHHHHHHHHHHHCCC------------HHHHHHHHHHhC
Confidence 887755 44555566677778888777765 688888888774
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.17 E-value=0.5 Score=37.07 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh----C---CCChHHHHHHHHHHHhCCCChHHHHHH
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ----N---FKSYGAWHHRKWILSKGHSSIDNELRL 128 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~----n---PKny~AW~hR~wvL~kl~~~~~eEL~~ 128 (450)
|+-..+++..+.++..++ .+++++.++++++.. . |.-..+++..+.+...++ .+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELG------------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 455678888999998887 489999999999954 1 223455666677777774 89999999
Q ss_pred HHHHHHhC
Q 013048 129 LDKFQKAD 136 (450)
Q Consensus 129 ~~k~L~~d 136 (450)
+++++++.
T Consensus 69 ~~~al~i~ 76 (78)
T PF13424_consen 69 YQKALDIF 76 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998864
No 172
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.13 E-value=0.76 Score=47.87 Aligned_cols=88 Identities=14% Similarity=0.046 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
+.|++++.||.+.+..+|-|.-...+|.....++. .+.-+=.-|+.++.+|.+..-|++.|+-.-..||... ++-+-|
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~-EAKkD~ 188 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM-EAKKDC 188 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH-HHHHhH
Confidence 44555555555555555555555555555555443 3333444455555555555555555555544444442 444555
Q ss_pred HHHHHhccCC
Q 013048 165 EDMICNNFSN 174 (450)
Q Consensus 165 dk~I~~npsN 174 (450)
+.++++.|.+
T Consensus 189 E~vL~LEP~~ 198 (536)
T KOG4648|consen 189 ETVLALEPKN 198 (536)
T ss_pred HHHHhhCccc
Confidence 5555555554
No 173
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.76 E-value=0.58 Score=33.31 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNY 145 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~y 145 (450)
+|.....++..++ .++++.+.++++++.+|.|..+|..
T Consensus 3 ~~~~la~~~~~~G-~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLG-QPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4555555555553 5666666666666666666666654
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.33 E-value=19 Score=35.29 Aligned_cols=101 Identities=11% Similarity=-0.024 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNY---RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~---Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
..-.....+|+| ++|+..+++++...|....+=.- -+.+..+. ..+.+++..+++.++.+|.+.
T Consensus 37 ~~A~~~~~~g~y-~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~------------~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 37 ATAQQKLQDGNW-KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN------------ADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHhCcCCC
Confidence 333444567777 67888888888888876533322 22222222 247778888888887777664
Q ss_pred H---HHHHHHHHHHhCC-----------------CChHHHHHHHHHHHHhCCCChhh
Q 013048 106 G---AWHHRKWILSKGH-----------------SSIDNELRLLDKFQKADSRNFHA 142 (450)
Q Consensus 106 ~---AW~hR~wvL~kl~-----------------~~~~eEL~~~~k~L~~dpkNyhA 142 (450)
. |.+-++-+...+. ....+++..+..+++..|..-.+
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 3 3444443311110 00235666777777777765444
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.87 E-value=11 Score=43.61 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
+++.++|.-++++++.+|+...|=....-++.+++ +.++++.+.+..-...+.+-..-..-..+++.++..+ +...+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d-~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD-EAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh-HHHHHH
Confidence 67899999999999999999999999999999995 8999998888776677777778888889999999997 799999
Q ss_pred HHHHHhccCChhHHHHHHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~L 184 (450)
++++..+|+ +.-..+.+..
T Consensus 101 e~~~~~~P~-eell~~lFma 119 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMA 119 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHH
Confidence 999999999 6554444433
No 176
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.70 E-value=0.72 Score=30.36 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
.+|...+-+...++ .+++++++++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~-~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC
Confidence 46667777777763 7777777777777777743
No 177
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.56 E-value=13 Score=38.02 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=79.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 013048 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (450)
Q Consensus 46 ~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eE 125 (450)
.-+++.+..||.+..+|----..-..+...............+.-|..+++||+.||.+...|....-+..+.- .-++-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHH
Confidence 44778899999999999865554444432000002233567889999999999999999999988877777664 44566
Q ss_pred HHHHHHHHHhCCCChhhhhHH-HHHHHHcCcC
Q 013048 126 LRLLDKFQKADSRNFHAWNYR-RFVAASMNRS 156 (450)
Q Consensus 126 L~~~~k~L~~dpkNyhAW~yR-~~vl~~L~~~ 156 (450)
.+-.++++..+|.++..|.-. .+....+..+
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASF 116 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccC
Confidence 778999999999999999865 4444445443
No 178
>PRK10941 hypothetical protein; Provisional
Probab=89.08 E-value=2.9 Score=42.01 Aligned_cols=68 Identities=18% Similarity=-0.030 Sum_probs=59.1
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
..+.+.+ ++||.+.+.+|.++|++..-|.-||.++.+++. +..|+.-++.-+...|+.+.+=.-|..
T Consensus 191 ~~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c------------~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 191 LMEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDC------------EHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3466778 999999999999999999999999999999984 688999999999999999887665544
Q ss_pred H
Q 013048 114 I 114 (450)
Q Consensus 114 v 114 (450)
+
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 4
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=89.05 E-value=4.3 Score=41.07 Aligned_cols=88 Identities=8% Similarity=0.024 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHH
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~d 165 (450)
.+++++.+++.+....+.+....+....+.-.+ +.|+++-+.+..++..+|+|..+..+..-+-..+|...+..-++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 356666677776666666666666555555555 3677777777777777777777777766666666665322223444
Q ss_pred HHHHhccCC
Q 013048 166 DMICNNFSN 174 (450)
Q Consensus 166 k~I~~npsN 174 (450)
++-..+|..
T Consensus 261 qL~~~~p~h 269 (290)
T PF04733_consen 261 QLKQSNPNH 269 (290)
T ss_dssp HCHHHTTTS
T ss_pred HHHHhCCCC
Confidence 444455553
No 180
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.05 E-value=6 Score=36.32 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc-cCC---hhHHHHHHHHHHHhhh
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN-FSN---YSAWHNRSLLLSNLLK 190 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n-psN---ySAW~yR~~LL~~L~~ 190 (450)
+.++.+|+.|.++|..-|++.+|+++|...++.-+..+ ++|+-.+++++.- +.- -.++.+|+.+...+++
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e-~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDE-EALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 57889999999999999999999999999888777774 7888888888863 332 2467788888877765
No 181
>PLN03218 maturation of RBCL 1; Provisional
Probab=89.01 E-value=37 Score=40.66 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHh
Q 013048 203 LPDEYEFVHQAIFT 216 (450)
Q Consensus 203 leeELe~v~~AI~~ 216 (450)
++++.+.+..+++.
T Consensus 770 le~A~~l~~~M~k~ 783 (1060)
T PLN03218 770 ADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777777654
No 182
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.86 E-value=46 Score=39.83 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 86 ILDEELRVVESALRQN-FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA--DSRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~n-PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~--dpkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
.+++++++++.+.+.+ +.+...|+--.-.+.+. +.+++++++++.+.+. .| |...|+.-...+.+.+..+ ++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~e-eA~~ 670 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLD-KAFE 670 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHH-HHHH
Confidence 3566666666666555 23444554444344444 2555666666655543 22 2333433333333444443 4555
Q ss_pred HHHHHHHh
Q 013048 163 YTEDMICN 170 (450)
Q Consensus 163 ~~dk~I~~ 170 (450)
.++++++.
T Consensus 671 l~~eM~k~ 678 (1060)
T PLN03218 671 ILQDARKQ 678 (1060)
T ss_pred HHHHHHHc
Confidence 55555543
No 183
>PLN03077 Protein ECB2; Provisional
Probab=88.63 E-value=24 Score=40.61 Aligned_cols=167 Identities=8% Similarity=-0.023 Sum_probs=102.5
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH--hCCCChHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWHHRKW 113 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~--~nPKny~AW~hR~w 113 (450)
+.|.+ ++|+..++.+ +.+...||.--..+...+ ..++++++++++.. ..|...+-..--.
T Consensus 536 k~G~~-~~A~~~f~~~----~~d~~s~n~lI~~~~~~G------------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~- 597 (857)
T PLN03077 536 RCGRM-NYAWNQFNSH----EKDVVSWNILLTGYVAHG------------KGSMAVELFNRMVESGVNPDEVTFISLLC- 597 (857)
T ss_pred HcCCH-HHHHHHHHhc----CCChhhHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCCcccHHHHHH-
Confidence 35666 7888888876 667788997766666555 47899999999887 3455544332222
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhH--HHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNY--RRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~y--R~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
...+. +.+++++++++.+.+.++-.....+| -..++.+.|..+ ++.+++++. ...|+ ...|.-.-.... +..
T Consensus 598 a~~~~-g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~-eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~- 671 (857)
T PLN03077 598 ACSRS-GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT-EAYNFINKM-PITPD-PAVWGALLNACR-IHR- 671 (857)
T ss_pred HHhhc-ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcC-
Confidence 22333 47899999999988554333333334 344455566664 677777764 23343 445543322221 111
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
-.+..-...+++++++|++.+.+....+++....+
T Consensus 672 ----------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 672 ----------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred ----------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 12333345678889999999888777777655444
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.12 E-value=8.8 Score=35.12 Aligned_cols=82 Identities=13% Similarity=-0.003 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
.++..-.+..++|.| .+|.+.++.+..-.|-...+=.-+-.+....-. ...+.+++..+++-|+.||++.
T Consensus 12 ~ly~~a~~~l~~~~Y-~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---------~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNY-EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---------QGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHhCCCCC
Confidence 345555667788999 789999999999888776554444333333321 2468899999999999998775
Q ss_pred H---HHHHHHHHHHh
Q 013048 106 G---AWHHRKWILSK 117 (450)
Q Consensus 106 ~---AW~hR~wvL~k 117 (450)
. |++.|+..-..
T Consensus 82 ~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYE 96 (142)
T ss_pred CccHHHHHHHHHHHH
Confidence 4 56666655443
No 185
>PLN03077 Protein ECB2; Provisional
Probab=87.54 E-value=19 Score=41.48 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=90.5
Q ss_pred hcCCCcHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-
Q 013048 36 HNHIYSKEAVELSTKLLE--TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK- 112 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~--~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~- 112 (450)
+.|.. ++|+++++++.. +.|+..|....-.- ..+.+ .+++++++++.+...++-.+...+|-+
T Consensus 566 ~~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~g------------~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 566 AHGKG-SMAVELFNRMVESGVNPDEVTFISLLCA-CSRSG------------MVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred HcCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHH-HhhcC------------hHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 56777 899999999887 67888885543322 22222 479999999999966555555555543
Q ss_pred -HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 113 -WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 113 -wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
-++.+. +.++++.++++++ .+.| |...|.---.....-+..+ ..-...+++++.+|.|...+.....++...++
T Consensus 632 v~~l~r~-G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 632 VDLLGRA-GKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHhC-CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 334455 5889999999886 3455 4666665444333323332 33345678899999999887777776665543
No 186
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.60 E-value=13 Score=37.93 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcCh
Q 013048 89 EELRVVESALRQNFKSYGAWHHRKWILSKGH-----------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE 157 (450)
Q Consensus 89 eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-----------~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~ 157 (450)
+...-+++.++.||.+..+|-----.-..+. ...+.-|..+++||+.+|.+..-|....-+..++-..
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~- 81 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS- 81 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-
Confidence 4456678899999999999974433333321 1246788999999999999988888877777666533
Q ss_pred HHHHHHHHHHHHhccCChhHHHHH
Q 013048 158 EDELKYTEDMICNNFSNYSAWHNR 181 (450)
Q Consensus 158 eeELe~~dk~I~~npsNySAW~yR 181 (450)
++-.+-.++++..+|.++..|.-.
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHH
Confidence 244567899999999999999543
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.47 E-value=1.1 Score=35.03 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---C-CC---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHh
Q 013048 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD---S-RN---FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d---p-kN---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~ 170 (450)
.-..++++.+.++..++ .++++++++++++++- + .+ ..++...+.+...+|.++ ++++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~-~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYE-EALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhh
Confidence 33467788888888884 9999999999999752 1 21 345566677888888885 799999988875
No 188
>PF13205 Big_5: Bacterial Ig-like domain
Probab=86.47 E-value=4.8 Score=33.40 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=45.4
Q ss_pred cceEEeecccccccccc-ceEEecccCcCccceeeeCCCCCCccceeEEEeccCCCCCCCCCccccEEEecCcccccccC
Q 013048 279 FPLVLYFNQAVEGVNSS-TITVDSELNTNKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGIISS 357 (450)
Q Consensus 279 ~~~~~~f~~~v~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
.++.|.||+||...+.. .+.+.........+.+.... . . .-..... ..+.....|.|.|.-| |.+.
T Consensus 23 ~~i~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~~~~---~-~--~~~i~p~---~~L~~~t~Y~v~i~~~----i~d~ 89 (107)
T PF13205_consen 23 SPIVITFSEPVDPASVSSAITITDSNGSGVPVSFSSWD---G-N--TLTITPS---QPLKPGTTYTVTIDSG----IKDL 89 (107)
T ss_pred CeEEEEECCceecCccceEEEEEecCCCcEEEEEEEcc---C-C--EEEEEEC---CcCCCCCEEEEEECCC----CCCC
Confidence 36999999999754422 22332222233444444111 1 1 1222212 2566778999999555 6778
Q ss_pred CCcccCCCcc---eEEE
Q 013048 358 SGFHYSNPFC---FAFR 371 (450)
Q Consensus 358 ~g~~~~~p~~---~~~~ 371 (450)
.|..+..|.. ++|+
T Consensus 90 ~Gn~l~~~~~~~~~~Ft 106 (107)
T PF13205_consen 90 AGNPLAAPFSPYTWSFT 106 (107)
T ss_pred CCCccCCCceEeeEEEE
Confidence 8876777766 7775
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=86.37 E-value=3.7 Score=47.19 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccch
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSK 199 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~ 199 (450)
+.+.+++..+.++++.+|+--.|=.+++.++.++|+.+ +++.+.+..-..-+.|-........++..++.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~--------- 92 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD-EALKLLEALYGLKGTDDLTLQFLQNVYRDLGK--------- 92 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch-hHHHHHhhhccCCCCchHHHHHHHHHHHHHhh---------
Confidence 35789999999999999999999999999999999997 68877666666677788888888888887765
Q ss_pred hchHHHHHHHHHHHHHhCCCC
Q 013048 200 EKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 200 ~~ileeELe~v~~AI~~dP~d 220 (450)
+++++.+|.++++.+|+-
T Consensus 93 ---~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 93 ---LDEAVHLYERANQKYPSE 110 (932)
T ss_pred ---hhHHHHHHHHHHhhCCcH
Confidence 789999999999999983
No 190
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=85.78 E-value=52 Score=34.94 Aligned_cols=175 Identities=14% Similarity=0.048 Sum_probs=112.5
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH----------
Q 013048 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR---------- 99 (450)
Q Consensus 30 ~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~---------- 99 (450)
..+-...+|+| +.|..-.++++..+|.+.++-....++..+.+.. .+-+..+.++-+
T Consensus 159 rarlll~~~d~-~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~------------~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 159 RARLLLNRRDY-PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW------------QALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred HHHHHHhCCCc-hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH------------HHHHHHHHHHHHccCCChHHHH
Confidence 34455578999 8999999999999999999999999988888742 222222222221
Q ss_pred --------------hCCCChHH----HHHHHHHH--------------HhCCCChHHHHHHHHHHHHhCCCChhhhhHHH
Q 013048 100 --------------QNFKSYGA----WHHRKWIL--------------SKGHSSIDNELRLLDKFQKADSRNFHAWNYRR 147 (450)
Q Consensus 100 --------------~nPKny~A----W~hR~wvL--------------~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~ 147 (450)
.+++.... |..----+ ..+ +..+++.+.+...++..-..- -.
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l-~~~~~A~~~i~~~Lk~~~D~~-----L~ 299 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL-GDHDEAQEIIEDALKRQWDPR-----LC 299 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc-CChHHHHHHHHHHHHhccChh-----HH
Confidence 12222222 11000000 011 245677777777776543222 11
Q ss_pred HHHHHc--CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 148 FVAASM--NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 148 ~vl~~L--~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
-.+..+ +.+ +.-++..+++++.+|.+...|.+.|.+..+ ++.+.++=+++..||..-|+ .+.|.
T Consensus 300 ~~~~~l~~~d~-~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k------------~~~w~kA~~~leaAl~~~~s-~~~~~ 365 (400)
T COG3071 300 RLIPRLRPGDP-EPLIKAAEKWLKQHPEDPLLLSTLGRLALK------------NKLWGKASEALEAALKLRPS-ASDYA 365 (400)
T ss_pred HHHhhcCCCCc-hHHHHHHHHHHHhCCCChhHHHHHHHHHHH------------hhHHHHHHHHHHHHHhcCCC-hhhHH
Confidence 222222 223 367788899999999999999888888664 23478888888999999885 45788
Q ss_pred HHHHHHcccccC
Q 013048 226 YHLWLLDQTVRV 237 (450)
Q Consensus 226 Y~r~LL~~~~~~ 237 (450)
++...+.++..+
T Consensus 366 ~la~~~~~~g~~ 377 (400)
T COG3071 366 ELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHcCCh
Confidence 988888886553
No 191
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.69 E-value=3.6 Score=41.07 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
..|++.|.++|.+||...+.|-.|..+-.++. .++....-|.++|.+.|...-+=+.-+..+.... .
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~------------~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-~ 93 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLK------------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-G 93 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhh------------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-c
Confidence 78999999999999999999988888777754 4777888899999999999888777766665553 6
Q ss_pred hHHHHHHHHHHHH
Q 013048 122 IDNELRLLDKFQK 134 (450)
Q Consensus 122 ~~eEL~~~~k~L~ 134 (450)
|++++..+.++..
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 8899999888844
No 192
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.63 E-value=2.4 Score=43.76 Aligned_cols=76 Identities=12% Similarity=-0.084 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
...+....+..|.. ++|..+++.+|.+.|.+..+..--|.+.+... .+-++=.||-++|.+.|-|..
T Consensus 119 Al~~A~~~~~~Gk~-ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~------------~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKL-EKAMTLFEHALALAPTNPQILIEMGQFREMHN------------EIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh------------hhHhhhhhhheeeeeCCCchH
Confidence 33455566788988 89999999999999999999888887776553 356777899999999999999
Q ss_pred HHHHHHHHH
Q 013048 107 AWHHRKWIL 115 (450)
Q Consensus 107 AW~hR~wvL 115 (450)
|-..|.-..
T Consensus 186 ALvnR~RT~ 194 (472)
T KOG3824|consen 186 ALVNRARTT 194 (472)
T ss_pred HHhhhhccc
Confidence 998886443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=85.50 E-value=19 Score=33.98 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChh---HHHHHHHHHHHhhhhhc
Q 013048 120 SSIDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS---AWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNy---hAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNyS---AW~yR~~LL~~L~~~~~ 193 (450)
+.+.++++.+++++...|... .|....+.+.-..+.+. +++..+++.|..+|.+.. |.+.++.....+.+...
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~-~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE-EAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 356666666666666655433 34444444444455554 566666666666666553 45555554433322100
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 194 ~g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
..........+++..+...|...|+.+-+
T Consensus 98 -~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 98 -RSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp --TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred -hcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 00111234678888888888888886644
No 194
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=85.22 E-value=37 Score=38.10 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHH
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~ 169 (450)
.++++.+.++++.+ +|..+|+--...+.+.|..+ ++++.++++.+
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~-~A~~lf~~M~~ 419 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGT-KAVEMFERMIA 419 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHH-HHHHHHHHHHH
Confidence 44455555544322 34445554444444444443 45555555444
No 195
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.03 E-value=31 Score=37.81 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCc-----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcc
Q 013048 8 PLKPEDAAASAAKAEKLRVLQSQFLHNHHNH-IYS-----KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPD 81 (450)
Q Consensus 8 ~~~~e~~~~~~~~~~k~~~l~~~~~~~~~~g-eys-----eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe 81 (450)
+..-++=.+=+.|+-++-.++..-..+.+.| .++ .+.+.+|..++...+.+.+.|..=-....+..
T Consensus 48 ~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~-------- 119 (568)
T KOG2396|consen 48 TLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKK-------- 119 (568)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--------
Confidence 3444444444445555544444433332222 122 36688999999999999999974332222222
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhCCCChHHHHHHHHHHHHhCCCChhhhh
Q 013048 82 SLKSILDEELRVVESALRQNFKSYGAWHHRK-WILSKGHSSIDNELRLLDKFQKADSRNFHAWN 144 (450)
Q Consensus 82 ~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~-wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~ 144 (450)
.+.+=-+.|.++|..||+++..|.+-. |.+... ...+.+-.++.+.|..+|.+.--|.
T Consensus 120 ----~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n-~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 120 ----TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN-LNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred ----chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-cchHHHHHHHHHHhhcCCCChHHHH
Confidence 144555789999999999999999874 555443 3588899999999999999998885
No 196
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=84.37 E-value=40 Score=37.80 Aligned_cols=166 Identities=7% Similarity=-0.019 Sum_probs=79.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--NFKSYGAWHHRKWIL 115 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~--nPKny~AW~hR~wvL 115 (450)
|.+ ++|.++++++.. | +...||.--..+.+.+ ..++++++++++... .|...+ +..---..
T Consensus 374 G~~-~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G------------~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~ 436 (697)
T PLN03081 374 GRM-EDARNVFDRMPR--K-NLISWNALIAGYGNHG------------RGTKAVEMFERMIAEGVAPNHVT-FLAVLSAC 436 (697)
T ss_pred CCH-HHHHHHHHhCCC--C-CeeeHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHH
Confidence 444 555665555543 2 2334554443333333 356777777776653 232222 22111111
Q ss_pred HhCCCChHHHHHHHHHHHHhCCC--ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 013048 116 SKGHSSIDNELRLLDKFQKADSR--NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpk--NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~ 193 (450)
.+. +.+++++++++.+.+...- +...++--..++.+.|..+ ++++.+++. ...| +...|.-.-......
T Consensus 437 ~~~-g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~-eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~----- 507 (697)
T PLN03081 437 RYS-GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD-EAYAMIRRA-PFKP-TVNMWAALLTACRIH----- 507 (697)
T ss_pred hcC-CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH-HHHHHHHHC-CCCC-CHHHHHHHHHHHHHc-----
Confidence 222 3566777777776653211 1112222233344445543 555554432 1222 223343322222221
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 194 ~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
..++.+...+++++..+|++...+.....++.+..+
T Consensus 508 -------g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 508 -------KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred -------CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 124666677788889999988888776666655433
No 197
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=83.79 E-value=4.5 Score=44.37 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=79.9
Q ss_pred CCChHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc---CcChHHHHHHHHHHHHhccC
Q 013048 102 FKSYGAWHHRKWILSKGH-----SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NRSEEDELKYTEDMICNNFS 173 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~-----~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L---~~~~eeELe~~dk~I~~nps 173 (450)
||.|+.--+-.|.++... ..+..|+..+.+++..-|.+....-.|.-++.+- +.. -.+|.-|..+++.||+
T Consensus 365 ~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~-~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 365 PRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDS-YLALRDCHVALRLNPS 443 (758)
T ss_pred cchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccH-HHHHHhHHhhccCChH
Confidence 455666666666666543 2345788889999999999888888887665432 222 2588888999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 174 NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 174 NySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
-.-||++..-.|..|.+ +.++|++-.-+....|.|...
T Consensus 444 ~~kah~~la~aL~el~r------------~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 444 IQKAHFRLARALNELTR------------YLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHHHHHHHHHHhh------------HHHhhhhHHHHhhcCchhhhh
Confidence 99999999999998876 677888877777777755543
No 198
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.20 E-value=12 Score=37.88 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
+..+.......|+--++|+..|+.+....|......|....+...++ .++++-..+..++..+|+++.
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~------------~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG------------HYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-------------HHHHHHHHHHHCCC-CCHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhccCCHH
Confidence 33445555555643389999999998888899999998888888876 489999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
+..+..-+-..++...+..-++++++-..+|.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 99988666666653324344577776677887
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=82.16 E-value=29 Score=34.05 Aligned_cols=118 Identities=7% Similarity=-0.137 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh---hHHHHHHHHcCcChHHHHHHHHHHHHhccCChh---H
Q 013048 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW---NYRRFVAASMNRSEEDELKYTEDMICNNFSNYS---A 177 (450)
Q Consensus 104 ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW---~yR~~vl~~L~~~~eeELe~~dk~I~~npsNyS---A 177 (450)
+...++..+.-.... +.++++++.+++++..+|....+= ..-+.+.-+.+.+. +++..+++.|+.+|.+.. |
T Consensus 31 ~~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~-~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQD-GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP-LAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCcCCCchHHH
Confidence 445555554444444 478889999999988888764432 22233444556665 788888999998887753 3
Q ss_pred HHHHHHHHHHhhhh-----hcc-CccchhchHHHHHHHHHHHHHhCCCCcch
Q 013048 178 WHNRSLLLSNLLKR-----KVE-GFVSKEKVLPDEYEFVHQAIFTDPDDQSG 223 (450)
Q Consensus 178 W~yR~~LL~~L~~~-----~~~-g~~~~~~ileeELe~v~~AI~~dP~deSa 223 (450)
.+.++.....+... ... ..........++++.+.+.|...|+-+.+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 44444332222210 000 00111233578889999999999977643
No 200
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.07 E-value=1.9 Score=28.22 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC
Q 013048 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (450)
Q Consensus 141 hAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN 174 (450)
.+|..++.+...++.++ ++++++.++++.+|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~-~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYE-EALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCC
Confidence 57889999999999996 8999999999999943
No 201
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.95 E-value=5.3 Score=36.41 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhc
Q 013048 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLT 74 (450)
Q Consensus 25 ~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~ 74 (450)
..++....+...+|+| +-|+++++.++..+|++..|-..|..++.+++.
T Consensus 71 d~vl~~A~~~~~~gd~-~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDY-QWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3455667777889999 999999999999999999999999999999984
No 202
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=6.3 Score=39.37 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..|..++.++.++|.+||-....|..|.-+-.++. .++...+-|.++++++|.-.-+=.+-+..+.....++ +.+...
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~-eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD-EAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc-HHHHHH
Confidence 56899999999999999999999999988888874 7888899999999999988877777776666666664 455554
Q ss_pred HHH
Q 013048 165 EDM 167 (450)
Q Consensus 165 dk~ 167 (450)
.++
T Consensus 102 qra 104 (284)
T KOG4642|consen 102 QRA 104 (284)
T ss_pred HHH
Confidence 444
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.26 E-value=15 Score=33.54 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=51.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhc-------CCCCCcchhhhhHHHHHHHHHHHHHhCC
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLT-------ENDSDPDSLKSILDEELRVVESALRQNF 102 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~y---tAWn~Rr~iL~~l~~-------~~~~dpe~~~~~~~eEL~~~e~aL~~nP 102 (450)
+...+|+| ++|+..++..|.+||.|. -|+..||.+-..... ..+.|| ....+++.-++.++...|
T Consensus 56 ayy~~~~y-~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~----~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 56 AYYKQGDY-EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDP----TPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHccCH-HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCc----HHHHHHHHHHHHHHHHCc
Confidence 44467888 899999999999999997 467777766555431 123344 456889999999999999
Q ss_pred CChHH
Q 013048 103 KSYGA 107 (450)
Q Consensus 103 Kny~A 107 (450)
+|.-|
T Consensus 131 ~S~ya 135 (142)
T PF13512_consen 131 NSEYA 135 (142)
T ss_pred CChhH
Confidence 88543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.37 E-value=34 Score=34.89 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=83.1
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH----hCCCChHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPEL-YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR----QNFKSYGAWHH 110 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~-ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~----~nPKny~AW~h 110 (450)
..|+| .-.++++.+++..||.- ...-..-+++-.+.|+ .+.+=..++.+=+ .+---...-.|
T Consensus 189 G~kEy-~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD------------~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 189 GMKEY-VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD------------IKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred cchhh-hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc------------HHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 45778 67789999999999544 4444455666666653 1111122221111 11111122233
Q ss_pred HHHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 111 RKWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 111 R~wvL~kl~-~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
|-..+-.++ ..+.+|...+++++..||+|..|=+.++.++-.+++.. ++++-.+.+..+.|.-+
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~-DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK-DALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH-HHHHHHHHHhccCCccc
Confidence 333232222 36789999999999999999999999999999999885 89999999999999765
No 205
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.93 E-value=68 Score=33.84 Aligned_cols=107 Identities=16% Similarity=0.056 Sum_probs=64.5
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh-CCCChHH-HHHH--
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-NFKSYGA-WHHR-- 111 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~-nPKny~A-W~hR-- 111 (450)
..|++ .+|-...+++|.-.|.+..+|+.-..+-..+|.. ..-...+++++-. ||.-+.. +.|-
T Consensus 115 ~~g~~-h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~------------~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 115 GRGKH-HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ------------IGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred ccccc-cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch------------hhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 45777 5778889999999999999999988887777742 2333455555544 4443221 1111
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~ 156 (450)
.+.|... +.|+++=+.-++++++++.+-.|=+-+..|++.-++.
T Consensus 182 aFgL~E~-g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 182 AFGLEEC-GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HhhHHHh-ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 1222233 3566666666777777765544434445555544444
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.14 E-value=21 Score=35.90 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTA---WNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytA---Wn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK 103 (450)
++++-+.....|.| .+|.+.+..-|...|+..-+ -.+-++++...+ .+.++-..+..+.+..||
T Consensus 144 ~Y~~A~~~~ksgdy-~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg------------~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 144 LYNAALDLYKSGDY-AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG------------DYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc------------cchHHHHHHHHHHHhCCC
Confidence 67777888889999 79999999999999998644 444455555554 589999999999998876
Q ss_pred Ch---HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 013048 104 SY---GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (450)
Q Consensus 104 ny---~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhA 142 (450)
+. .+-.--+-++..++ .-+++...+..+++..|..-.|
T Consensus 211 s~KApdallKlg~~~~~l~-~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLG-NTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred CCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCCHHH
Confidence 64 55666677777774 7789999999999999987766
No 207
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=77.75 E-value=52 Score=36.17 Aligned_cols=127 Identities=20% Similarity=0.123 Sum_probs=81.8
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC
Q 013048 30 QFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (450)
Q Consensus 30 ~~~~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n 101 (450)
.-+..+..++| .+|..+|.++|.+ +|...++.+.-..++...+ .+.++-.+|+.++.+-
T Consensus 247 ~a~~y~~~~k~-~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G------------Kf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 247 LALVYRSLGKY-DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG------------KFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC------------ChHHHHHHHHHHHHHH
Confidence 44456678889 7999999999874 5555666666666665554 3566666666666544
Q ss_pred CCChHHHH--------HHHHHHHhCCCChHHHHHHHHHHHHhC-----CCCh---hhhhHHHHHHHHcCcChHHHHHHHH
Q 013048 102 FKSYGAWH--------HRKWILSKGHSSIDNELRLLDKFQKAD-----SRNF---HAWNYRRFVAASMNRSEEDELKYTE 165 (450)
Q Consensus 102 PKny~AW~--------hR~wvL~kl~~~~~eEL~~~~k~L~~d-----pkNy---hAW~yR~~vl~~L~~~~eeELe~~d 165 (450)
-+.+.+=+ .-.-+.... ..+++++.++.+++++. +.|+ .--..-++++.++|++. ++.++++
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~-~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~-ea~~~~k 391 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSM-NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK-EAEELYK 391 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh-HHHHHHH
Confidence 43222222 112222223 47888999998888864 3332 23344577788889996 7899999
Q ss_pred HHHHhc
Q 013048 166 DMICNN 171 (450)
Q Consensus 166 k~I~~n 171 (450)
++|.+.
T Consensus 392 ~ai~~~ 397 (508)
T KOG1840|consen 392 KAIQIL 397 (508)
T ss_pred HHHHHH
Confidence 999865
No 208
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=77.74 E-value=97 Score=32.52 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
+++.++..+.+++.-|||+.-|=.-.+-+.... +.|+.+++.++.+++.||
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAK-GDYQKAVEALERVLEQNP 245 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhc-cchHHHHHHHHHHHHhCh
Confidence 344555555555555555554444333333332 245555555555555555
No 209
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=77.73 E-value=97 Score=32.52 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHH
Q 013048 86 ILDEELRVVESALRQNFKSYGA--WHHRKWILSKG--HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDEL 161 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~A--W~hR~wvL~kl--~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeEL 161 (450)
.++++++..+++.+..++.|.. =++-|-+-+.. ....++++..+.++++.||++..|=--.+-+....|.+. .++
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~-~AV 234 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQ-KAV 234 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchH-HHH
Confidence 5788888888888777766543 33334444332 146789999999999999999999877888877788885 799
Q ss_pred HHHHHHHHhccCChh
Q 013048 162 KYTEDMICNNFSNYS 176 (450)
Q Consensus 162 e~~dk~I~~npsNyS 176 (450)
+.....++.||.--+
T Consensus 235 ~~~e~v~eQn~~yl~ 249 (389)
T COG2956 235 EALERVLEQNPEYLS 249 (389)
T ss_pred HHHHHHHHhChHHHH
Confidence 999999999987654
No 210
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.60 E-value=23 Score=38.76 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CChHHHHHHHHHHHHh-------CC------CChhhhhHH-----
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-SSIDNELRLLDKFQKA-------DS------RNFHAWNYR----- 146 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-~~~~eEL~~~~k~L~~-------dp------kNyhAW~yR----- 146 (450)
..+.-++...+||.++|.+..||. +|-.-. ....++.+++.++++. +. ..+.+|.-|
T Consensus 183 np~aRIkaA~eALei~pdCAdAYI----LLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYI----LLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHh----hcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 346667899999999999999985 332211 2345555556555542 21 111222211
Q ss_pred -------HHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 013048 147 -------RFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 147 -------~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~ 219 (450)
+.++.++|+.. ++++-+.++++.+|. -+..+-|..|+.-|.. .++..-++..+..+.+
T Consensus 259 ~y~KrRLAmCarklGr~~-EAIk~~rdLlke~p~-~~~l~IrenLie~LLe-------------lq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLR-EAIKMFRDLLKEFPN-LDNLNIRENLIEALLE-------------LQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChH-HHHHHHHHHHhhCCc-cchhhHHHHHHHHHHh-------------cCCHHHHHHHHHHhcc
Confidence 23455677775 799999999998874 3455677778777653 2333444555555554
Q ss_pred C----cchHHHHHHHHccc
Q 013048 220 D----QSGWFYHLWLLDQT 234 (450)
Q Consensus 220 d----eSaW~Y~r~LL~~~ 234 (450)
+ ..+|+|-+-||...
T Consensus 324 i~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKAR 342 (539)
T ss_pred ccCCchHHHHHHHHHHHHH
Confidence 3 57899999998643
No 211
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=77.48 E-value=80 Score=31.47 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHH
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~d 165 (450)
.++.+-..+.+|+...+-+|++|..-..+=.+.....+.+...++..++..|.+...|..=.-.+..++... ..=..++
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~-~aR~lfe 94 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDIN-NARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH-HHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHH-HHHHHHH
Confidence 378889999999976677899998554443444446666999999999999999999986666666666543 4555677
Q ss_pred HHHHhccCCh-hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHH
Q 013048 166 DMICNNFSNY-SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 166 k~I~~npsNy-SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y 226 (450)
+++..-+.+. +-=.+..++=.... ..-++.-.....++....|++.+.+.+
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~----------~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESK----------YGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 7777666665 33333333321110 111455556677888888887776643
No 212
>PRK10941 hypothetical protein; Provisional
Probab=77.02 E-value=16 Score=36.79 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHH
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHN 180 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~y 180 (450)
..++.+|.+++.++.++|.+..-|.-|+.++.+++-+. .++.-.+..|+..|.+..+=--
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~-~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH-VALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHhCCCchhHHHH
Confidence 47899999999999999999999999999999999985 7888889999999999876433
No 213
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.73 E-value=16 Score=39.90 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=51.6
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~ 109 (450)
+.+.| .+.-+.+.++|.++|++...|.+=..-...... .++.+-..+-+.|+.||.++..|.
T Consensus 117 k~~~~-~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-----------ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 117 KKKTY-GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-----------NIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred Hhcch-hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-----------chHHHHHHHHHHhhcCCCChHHHH
Confidence 34446 688899999999999999999987665555542 368888999999999999999995
No 214
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.00 E-value=7.5 Score=22.96 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.+|..++.++..++. +++++.++..++..+|++
T Consensus 2 ~~~~~~a~~~~~~~~------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh------------HHHHHHHHHHHHccCCCC
Confidence 467777888777664 799999999999998864
No 215
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.56 E-value=12 Score=39.15 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHH
Q 013048 86 ILDEELRVVESALRQN---FKS-YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDEL 161 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~n---PKn-y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeEL 161 (450)
.|..+..+|...|..+ |+- .-.+.+|.-+-..+ +.|...|.-|.+++.++|.+--|...-..++-.|.++. +++
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~-~a~ 173 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFA-EAV 173 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHH-HHH
Confidence 3666777777766543 222 23344554444444 36667777777777777776666444455555555553 455
Q ss_pred HHHHHHHHhccCChhHH
Q 013048 162 KYTEDMICNNFSNYSAW 178 (450)
Q Consensus 162 e~~dk~I~~npsNySAW 178 (450)
.+|+..+.++..+-.+-
T Consensus 174 nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 174 NWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHhhhhhhhHHHHHHH
Confidence 56655555555555443
No 216
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=75.35 E-value=18 Score=36.49 Aligned_cols=89 Identities=18% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHH
Q 013048 15 AASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVV 94 (450)
Q Consensus 15 ~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~ 94 (450)
.+++-..+-++++.+-..++.....-.+.|+...+.+|.+||++.--|--||.+..+++. +.-++.-+
T Consensus 171 L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c------------~~vAl~dl 238 (269)
T COG2912 171 LKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC------------YHVALEDL 238 (269)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC------------chhhHHHH
Confidence 344445555566655555555544444899999999999999999999999999999974 57788888
Q ss_pred HHHHHhCCCChHHHHHHHHHH
Q 013048 95 ESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 95 e~aL~~nPKny~AW~hR~wvL 115 (450)
+..+...|+...+=.-|..+.
T Consensus 239 ~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 239 SYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHhCCCchHHHHHHHHHH
Confidence 888888888887766555444
No 217
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=75.26 E-value=52 Score=32.85 Aligned_cols=122 Identities=12% Similarity=0.018 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
++|=+.+.+++...+-++.+|..=..+=.+.+ .+...+.+.++.+++..|++...|.+=--.|..++ .
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~-----------~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~-d 85 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCN-----------KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN-D 85 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC-----------S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC-c
Confidence 68888999998777778888875544422322 13466899999999999999999987766666664 7
Q ss_pred hHHHHHHHHHHHHhCCCCh---hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChh
Q 013048 122 IDNELRLLDKFQKADSRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS 176 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNy---hAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNyS 176 (450)
.+++-.++++++..-+... ..|..-.-.=...|..+ .-.+..++..+.-|.+.+
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhhhhhH
Confidence 8889999999998877766 23332222223334332 344445555666666443
No 218
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=74.11 E-value=27 Score=30.68 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=69.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNY---RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~---Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~ 109 (450)
....+|++ -+||++.+.++..++++..+|.. -|.++..+.. ...||+.-..-+...++++.++....|.+...-+
T Consensus 5 ~~~~rGnh-iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~-~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 5 DYFARGNH-IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK-KTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHccCH-HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH-hccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 34578999 89999999999999999988753 3567766653 2236665556678889999999999998844443
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 110 HRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 110 hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
.-+--+.-. ..|++.+.-+.+.|.+
T Consensus 83 ~la~~l~s~-~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSV-KYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHhcc
Confidence 322222111 2466777777777664
No 219
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.08 E-value=2.6 Score=43.81 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=83.8
Q ss_pred HHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhh
Q 013048 64 YRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAW 143 (450)
Q Consensus 64 ~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW 143 (450)
.|....+.+.. ..++++++.+..+|..||.+......|.-++-++. ....++.-|+.+++++|......
T Consensus 117 ~k~~A~eAln~----------G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~y 185 (377)
T KOG1308|consen 117 KKVQASEALND----------GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGY 185 (377)
T ss_pred HHHHHHHHhcC----------cchhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCccccccc
Confidence 45556666542 35899999999999999999999999999998884 66789999999999999999999
Q ss_pred hHHHHHHHHcCcChHHHHHHHHHHHHhccC-ChhHH
Q 013048 144 NYRRFVAASMNRSEEDELKYTEDMICNNFS-NYSAW 178 (450)
Q Consensus 144 ~yR~~vl~~L~~~~eeELe~~dk~I~~nps-NySAW 178 (450)
-+|+..-..++.+. ++-.....+++++.. ..++|
T Consensus 186 kfrg~A~rllg~~e-~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 186 KFRGYAERLLGNWE-EAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred chhhHHHHHhhchH-HHHHHHHHHHhccccHHHHHH
Confidence 99998888888885 677777777777643 33565
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=73.61 E-value=1.3e+02 Score=32.17 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHH
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk 166 (450)
...=++..++.++.+|.++..|..-+.+..+.+ .|.++-++++.+++..| ..+.|...+.++..+|.+. ++=+...+
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~-~A~~~r~e 386 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK-LWGKASEALEAALKLRP-SASDYAELADALDQLGEPE-EAEQVRRE 386 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChH-HHHHHHHH
Confidence 355567778888888888888888887777663 67788888888888777 4566788888888888774 34444444
Q ss_pred HH
Q 013048 167 MI 168 (450)
Q Consensus 167 ~I 168 (450)
++
T Consensus 387 ~L 388 (400)
T COG3071 387 AL 388 (400)
T ss_pred HH
Confidence 44
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=72.90 E-value=49 Score=28.89 Aligned_cols=53 Identities=25% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL 98 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL 98 (450)
.....|.+ ++++.+...++.++|-+-.+|...-.++...++ ..+++..++.+-
T Consensus 71 ~~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~------------~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 71 ALLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGR------------RAEALRVYERYR 123 (146)
T ss_dssp HHHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHH
T ss_pred HHHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC------------HHHHHHHHHHHH
Confidence 45567888 899999999999999999999999999988874 566666666553
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.65 E-value=19 Score=27.30 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh
Q 013048 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHK 72 (450)
Q Consensus 30 ~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l 72 (450)
........|+| ++|+...+.+|.+.|++.+|=.-+..+-.++
T Consensus 7 lAig~ykl~~Y-~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 7 LAIGHYKLGEY-EKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHTT-H-HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 34566789999 8999999999999999999988877665544
No 223
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.13 E-value=8.9 Score=22.60 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
+|..++.++...+ .++++...+.++++++|.
T Consensus 3 ~~~~~a~~~~~~~-~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLG-DYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHccCCC
Confidence 4555555555542 556666666666665553
No 224
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=61.78 E-value=21 Score=39.38 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~--~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
+.+..|+..+.+++..-|...-..-.|.-++.+-+ +.--.+|.-|-.++.+||..+-||.+-.-++..++++. ++|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~-eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL-EALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH-Hhhh
Confidence 56788899999999999988888888877766432 23346999999999999999999999999999999996 7999
Q ss_pred HHHHHHHhccCChh
Q 013048 163 YTEDMICNNFSNYS 176 (450)
Q Consensus 163 ~~dk~I~~npsNyS 176 (450)
|-..+....|.|..
T Consensus 467 ~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 467 CHWALQMSFPTDVA 480 (758)
T ss_pred hHHHHhhcCchhhh
Confidence 98888888998753
No 225
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.40 E-value=1.1e+02 Score=31.98 Aligned_cols=152 Identities=14% Similarity=0.020 Sum_probs=91.6
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
..+...| .+++++..--.+.+|++-.+-..-+-+..... .+..+-.|++++-...|+-.+-=.|-..
T Consensus 20 lI~d~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q------------~f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 20 LIRDARY-ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ------------EFALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHHhhH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 3455567 78888888888999988888777777777664 5888999999999999987665444444
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC--ChhHHHHHHHHHHHhhhh
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--NYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps--NySAW~yR~~LL~~L~~~ 191 (450)
-|-+. ..+.++|.....+... .+...+..-++..-.|.++.+--+..+++.-|+ +...-..-+.++.+
T Consensus 87 SLY~A-~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk---- 156 (459)
T KOG4340|consen 87 SLYKA-CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK---- 156 (459)
T ss_pred HHHHh-cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----
Confidence 44444 3667787766654332 233333333333333433445555555555553 22223333333332
Q ss_pred hccCccchhchHHHHHHHHHHHHHh
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFT 216 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~ 216 (450)
+..+++++..++.|++.
T Consensus 157 --------egqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 157 --------EGQYEAAVQKFQAALQV 173 (459)
T ss_pred --------cccHHHHHHHHHHHHhh
Confidence 23366666666666654
No 226
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.55 E-value=16 Score=23.28 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
|..+.+++..+. +.++++++.++++++..|.
T Consensus 2 a~~~~a~~~~~~-g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL-GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHHHCcC
Confidence 344455555554 3566666666666666664
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.00 E-value=25 Score=22.29 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 61 AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
|....+.+...++ .+++++..++.++...|++
T Consensus 2 a~~~~a~~~~~~g------------~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLG------------DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHC------------HHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcc------------CHHHHHHHHHHHHHHCcCC
Confidence 4455666666665 5899999999999999986
No 228
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=59.22 E-value=36 Score=35.46 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 013048 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (450)
Q Consensus 47 lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL 126 (450)
.+-+.-...|.+.+.|..=..-+.+.+ .|.+--..|..||+.+|.|...|.+-+-.-....+.++..-
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k------------~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~R 162 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKK------------MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSR 162 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHH
Confidence 344455577888888875444444443 35555678999999999999999874322222225788888
Q ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh
Q 013048 127 RLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (450)
Q Consensus 127 ~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~ 170 (450)
..+.+.|.++|++.-.|.-- ..-||.|.+++|..
T Consensus 163 a~f~~glR~N~~~p~iw~ey----------fr~El~yiTKL~~R 196 (435)
T COG5191 163 AMFLKGLRMNSRSPRIWIEY----------FRMELMYITKLINR 196 (435)
T ss_pred HHHHhhhccCCCCchHHHHH----------HHHHHHHHHHHHhh
Confidence 99999999999999888521 12366676666643
No 229
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.81 E-value=59 Score=34.12 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
+.|...|.-|.+++.++|++..|.+--.-++..+. .+.+++..|+..+.+|..
T Consensus 133 ~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe-~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 133 GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE-RFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhhHH
Confidence 46999999999999999999998876666666664 677888888877655544
No 230
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.55 E-value=77 Score=32.19 Aligned_cols=68 Identities=18% Similarity=0.038 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCC---------------------CChHHHHHHHHHHHHhCCCChhhhhHHH
Q 013048 89 EELRVVESALRQNFKSYGAWHHRKWILSKGH---------------------SSIDNELRLLDKFQKADSRNFHAWNYRR 147 (450)
Q Consensus 89 eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~---------------------~~~~eEL~~~~k~L~~dpkNyhAW~yR~ 147 (450)
.-+...+.=+..+|+||++|.-++....+.. ...+.+...+-++++++||-..|...-.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4567777788999999998876655554321 1246888899999999999999988888
Q ss_pred HHHHHcCcC
Q 013048 148 FVAASMNRS 156 (450)
Q Consensus 148 ~vl~~L~~~ 156 (450)
-+...+|.+
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 888888875
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=54.87 E-value=21 Score=24.14 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHH--HhCCCC
Q 013048 177 AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAI--FTDPDD 220 (450)
Q Consensus 177 AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI--~~dP~d 220 (450)
||.+.+.+...++. ++++++++.+++ ..+|++
T Consensus 1 al~~Lg~~~~~~g~------------~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD------------YEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCC------------HHHHHHHHHHHHHhcccccC
Confidence 56777777777765 799999999955 555544
No 232
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.53 E-value=46 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhh
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWN 144 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~ 144 (450)
.|++++.+++.+|+++|.|-.|=.
T Consensus 16 ~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 16 EYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp -HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHH
Confidence 666666666666666666666633
No 233
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=54.17 E-value=1.1e+02 Score=32.08 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHH
Q 013048 17 SAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRV 93 (450)
Q Consensus 17 ~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~ 93 (450)
...-.+++-..++-++.....|...++.+...+.+|..-|+. ...|.++.+++...+. +++-+.+
T Consensus 95 ~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~------------~e~vi~i 162 (353)
T PF15297_consen 95 QRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGP------------IEDVIAI 162 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC------------HHHHHHH
Confidence 344888889999999999999999999999999999988864 5789999998877652 5778899
Q ss_pred HHHHHHhCCC
Q 013048 94 VESALRQNFK 103 (450)
Q Consensus 94 ~e~aL~~nPK 103 (450)
|+.|+.....
T Consensus 163 yEeAi~agAq 172 (353)
T PF15297_consen 163 YEEAILAGAQ 172 (353)
T ss_pred HHHHHHcCCC
Confidence 9999875543
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.15 E-value=2.9e+02 Score=29.26 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=96.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHH-HHHhCCC
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLET----NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVES-ALRQNFK 103 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~----NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~-aL~~nPK 103 (450)
+.+++.|.-+.| +.++.+.+.+=.+ -++...+=.....+|..... .+..++++..+.. +....+.
T Consensus 146 ~lllSyRdiqdy-damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~---------~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 146 NLLLSYRDIQDY-DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK---------PGDREKALQILLPVLESDENP 215 (374)
T ss_pred HHHHHhhhhhhH-HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhccCCC
Confidence 445667777778 5666666655444 23333333333333333211 1356899999988 4455666
Q ss_pred ChHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcCh--HHHHHHHH----HHH-
Q 013048 104 SYGAWHHRKWILSKGH--------SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE--EDELKYTE----DMI- 168 (450)
Q Consensus 104 ny~AW~hR~wvL~kl~--------~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~--eeELe~~d----k~I- 168 (450)
+...+--.+-+.+.+- ..+++++..|.++.+++|.-|+. -+-..++.-.|... ..|+.-+- ..+
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 6777765555554321 24789999999999999655444 44444554444321 22333222 111
Q ss_pred Hhc--cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 169 CNN--FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 169 ~~n--psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
+.. -+..+-|-+-..+=-.+. .+-+++++....+++...| -+| |+...+
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL----------~~d~~ka~~a~e~~~~l~~---~~W-~l~St~ 345 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVL----------AGDYEKAIQAAEKAFKLKP---PAW-ELESTL 345 (374)
T ss_pred hhccccccccHHHHHHHHHHHHH----------cCCHHHHHHHHHHHhhcCC---cch-hHHHHH
Confidence 111 122334544433311111 1125888899999998876 578 455444
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=53.03 E-value=99 Score=30.70 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=53.8
Q ss_pred HHHHHHHHHHh----hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcc-----hhhhhHHHHHHHHH
Q 013048 25 RVLQSQFLHNH----HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPD-----SLKSILDEELRVVE 95 (450)
Q Consensus 25 ~~l~~~~~~~~----~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe-----~~~~~~~eEL~~~e 95 (450)
...++.+.... ..+.+ ++++..+..++.++|..+.+|++-+.....+.......++ ....-...++..|-
T Consensus 255 ~l~~a~w~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 333 (352)
T PF02259_consen 255 FLLLAKWLDELYSKLSSESS-DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYL 333 (352)
T ss_pred HHHHHHHHHhhccccccccH-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHH
Confidence 34444444444 44555 7999999999999999999999988887777542211111 23345667778888
Q ss_pred HHHHhCCC
Q 013048 96 SALRQNFK 103 (450)
Q Consensus 96 ~aL~~nPK 103 (450)
+++...++
T Consensus 334 ~al~~~~~ 341 (352)
T PF02259_consen 334 KALSLGSK 341 (352)
T ss_pred HHHhhCCC
Confidence 88887777
No 236
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.59 E-value=34 Score=35.58 Aligned_cols=63 Identities=14% Similarity=-0.032 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v 149 (450)
..+++..+++-+|...|.++++-.--+.+.+... .+-++=.||-++|.++|.|-.|..+|.-.
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHN-EIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-hhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4566666666666666666666654444444332 33445556666666666666666666443
No 237
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.74 E-value=34 Score=35.64 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYR-KLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~R-r~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~ 109 (450)
|-| .+.=..+.++|.++|.+...|.+- ..-+... ..++.....+.+.|+.||.++..|.
T Consensus 121 k~y-~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~------------ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 121 KMY-GEMKNIFAECLTKHPLNVDLWIYCCAFELFEI------------ANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHH-HHHHHHHHHHHhcCCCCceeeeeeccchhhhh------------ccHHHHHHHHHhhhccCCCCchHHH
Confidence 455 677889999999999999999872 2222222 2478888999999999999999996
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.36 E-value=3e+02 Score=27.17 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc-----cchhchHHHHHHHHHHHHHhCCC
Q 013048 158 EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF-----VSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 158 eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~-----~~~~~ileeELe~v~~AI~~dP~ 219 (450)
.+.++.+.++++.+|.++.+|++-+.....+......+. ....+....++.+|-+++...|+
T Consensus 275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 367899999999999999999999999888875432211 13445678899999999999887
No 239
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.49 E-value=1.3e+02 Score=30.61 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
+.++-|...+..+|.|.-|++-|+..--..=+ ..++-+-+.++++++|.-.|+-.
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn------------~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN------------EAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC------------HHHHHHHHHHHHhcChhhHHHHH
Confidence 57788888888888888888777654322111 25555666777777776666553
No 240
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.42 E-value=4.7e+02 Score=29.09 Aligned_cols=125 Identities=11% Similarity=0.110 Sum_probs=87.4
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
++++ .+|-..++.+|..+..+.+.|-.=..+=++. ..+..+-.+.++++..=|.--+.|+---..-.
T Consensus 86 q~e~-~RARSv~ERALdvd~r~itLWlkYae~Emkn------------k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 86 QKEI-QRARSVFERALDVDYRNITLWLKYAEFEMKN------------KQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHH-HHHHHHHHHHHhcccccchHHHHHHHHHHhh------------hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4556 6888899999999999999998655544333 24788999999999999999999974443333
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHH
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW 178 (450)
.+ +...-+-..+++.++-.| .-.||.--.-.=-+.+.. +.+-..|.+.+-.||.- ++|
T Consensus 153 ~L-gNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykei-eraR~IYerfV~~HP~v-~~w 210 (677)
T KOG1915|consen 153 ML-GNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEI-ERARSIYERFVLVHPKV-SNW 210 (677)
T ss_pred Hh-cccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHH-HHHHHHHHHHheecccH-HHH
Confidence 44 577888899999999988 577886332211111222 24445567777777654 444
No 241
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=45.22 E-value=38 Score=30.79 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHH
Q 013048 11 PEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYR 65 (450)
Q Consensus 11 ~e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~R 65 (450)
+++..+--+|.|-+|+++-..+.+. +. +.|=++|..++..+|+|..+---.
T Consensus 66 kk~ktk~DeY~EaLRDfq~~~iaKl---e~-e~Ae~vY~el~~~~P~HLpaHla~ 116 (139)
T PF12583_consen 66 KKDKTKWDEYSEALRDFQCSWIAKL---EP-ENAEQVYEELLEAHPDHLPAHLAM 116 (139)
T ss_dssp ------HHHHHHHHHHHHHHHHTTS----H-HHHHHHHHHHHHH-TT-THHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhh---CH-HHHHHHHHHHHHHCcchHHHHHHH
Confidence 3444444557777777776665554 44 677889999999999999864433
No 242
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=45.14 E-value=3e+02 Score=31.60 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC----C
Q 013048 45 VELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH----S 120 (450)
Q Consensus 45 L~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~----~ 120 (450)
+-+.+.+|..||.+..-|..|-.+...... +.-..+++.+...|||-...=-|+.|+-..-. +
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~-------------~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAA-------------EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChH-------------HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Q ss_pred ChHHHHHHHHHHHHhC-------------------------------------CCChh-------------------hhh
Q 013048 121 SIDNELRLLDKFQKAD-------------------------------------SRNFH-------------------AWN 144 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~d-------------------------------------pkNyh-------------------AW~ 144 (450)
.++.+-..++++++.. |++-+ .|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Q ss_pred HHHHHHHHcCc---------------------------------ChHHHHHHHHHHHHhc--cCChhHHH-HHHHHHHHh
Q 013048 145 YRRFVAASMNR---------------------------------SEEDELKYTEDMICNN--FSNYSAWH-NRSLLLSNL 188 (450)
Q Consensus 145 yR~~vl~~L~~---------------------------------~~eeELe~~dk~I~~n--psNySAW~-yR~~LL~~L 188 (450)
+-.-+.+.+|. +.++.++.|++-|.+- |.-+..|+ |.-..+.++
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 013048 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (450)
Q Consensus 189 ~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~ 229 (450)
+. .-++++-+++.+|+...|...+--.|+..
T Consensus 562 gg----------~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 562 GG----------TKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred cC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
No 243
>PRK04841 transcriptional regulator MalT; Provisional
Probab=44.80 E-value=5.3e+02 Score=29.52 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=75.7
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC----Ch
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELY-----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK----SY 105 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~y-----tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK----ny 105 (450)
...|++ ++|+.....++...|... .+++..+.++...+ .+.+++..++.++..... ..
T Consensus 463 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G------------~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 463 INDGDP-EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG------------ELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HhCCCH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHhhhcchHH
Confidence 357888 899999999998666532 23344444444443 478888888888864332 11
Q ss_pred H--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC--------ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh
Q 013048 106 G--AWHHRKWILSKGHSSIDNELRLLDKFQKADSR--------NFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (450)
Q Consensus 106 ~--AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk--------NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~ 170 (450)
. +......+.... +.++.+..++.+++..-.. ...++...+.+....|.++ ++.+.+.+++..
T Consensus 530 ~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~-~A~~~~~~al~~ 602 (903)
T PRK04841 530 ALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD-EAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH-HHHHHHHHhHHh
Confidence 1 222233444444 5889999999888875322 1122334555666668875 788888888775
No 244
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.78 E-value=1.9e+02 Score=30.91 Aligned_cols=116 Identities=14% Similarity=0.002 Sum_probs=78.9
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC-------------------------Ccc---------
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS-------------------------DPD--------- 81 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~-------------------------dpe--------- 81 (450)
+-|.| ++||..|+.+....--....|-+-..+..-++.+.++ |.+
T Consensus 69 hLgdY-~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 69 HLGDY-EEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred hhccH-HHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 56888 8999999999888877888888877776666644221 000
Q ss_pred --------------hhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHH
Q 013048 82 --------------SLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRR 147 (450)
Q Consensus 82 --------------~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~ 147 (450)
.....|+++++.+.++|.-||.-...=.|-.-+.-++. -|+-.-+.++-.|...|..--|-+-+.
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 01256888888888888766654444445556666663 566666777777888887777777666
Q ss_pred HHHHHc
Q 013048 148 FVAASM 153 (450)
Q Consensus 148 ~vl~~L 153 (450)
..+-++
T Consensus 227 cn~fRl 232 (557)
T KOG3785|consen 227 CNLFRL 232 (557)
T ss_pred HHHhhh
Confidence 555444
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.56 E-value=2.8e+02 Score=29.52 Aligned_cols=103 Identities=12% Similarity=-0.025 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH----HHHHHHcCcChHHHH
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR----RFVAASMNRSEEDEL 161 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR----~~vl~~L~~~~eeEL 161 (450)
.+.++-..-+++|...|++--||..-.-.-..++ ...--...+.|++..=.-+..+..|- .|.+...|.+. ++=
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G-~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~-dAE 195 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG-NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD-DAE 195 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc-chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch-hHH
Confidence 3556667778999999999999975544444443 44445566666665522234444543 35566678886 455
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 162 KYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 162 e~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
+..++++++|+.|-.|=|-+..++..-++
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 66799999999999998888888887554
No 246
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.21 E-value=5.2e+02 Score=27.77 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=52.9
Q ss_pred hcCCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNP---ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NP---d~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.++.| ..|+.+.+-.+...- +....|. +.+..+++ +|++++..+..+...+--+...|.+-.
T Consensus 34 s~rDy-tGAislLefk~~~~~EEE~~~~lWi--a~C~fhLg------------dY~~Al~~Y~~~~~~~~~~~el~vnLA 98 (557)
T KOG3785|consen 34 SNRDY-TGAISLLEFKLNLDREEEDSLQLWI--AHCYFHLG------------DYEEALNVYTFLMNKDDAPAELGVNLA 98 (557)
T ss_pred hcccc-hhHHHHHHHhhccchhhhHHHHHHH--HHHHHhhc------------cHHHHHHHHHHHhccCCCCcccchhHH
Confidence 34556 566666665553332 2344554 34455565 488888888888877777778888887
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHA 142 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhA 142 (450)
-+...++ .|.++-....+ -|++.-+
T Consensus 99 cc~FyLg-~Y~eA~~~~~k----a~k~pL~ 123 (557)
T KOG3785|consen 99 CCKFYLG-QYIEAKSIAEK----APKTPLC 123 (557)
T ss_pred HHHHHHH-HHHHHHHHHhh----CCCChHH
Confidence 7777764 66655444333 3555433
No 247
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=38.18 E-value=9.2e+02 Score=30.36 Aligned_cols=158 Identities=13% Similarity=0.017 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHH
Q 013048 13 DAAASAAKAEKLRVLQ---SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (450)
Q Consensus 13 ~~~~~~~~~~k~~~l~---~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~e 89 (450)
.=.+..+++-+|..-+ -.+...+...+-.++|-+++..++...-+-...|..-+..|.... .-+.
T Consensus 1515 sl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n------------e~~a 1582 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN------------EAEA 1582 (1710)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc------------HHHH
Confidence 3334444555554322 223344444444478899999999988888889987776665543 1356
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHH
Q 013048 90 ELRVVESALRQNFKSYGAWHHRKWIL--SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (450)
Q Consensus 90 EL~~~e~aL~~nPKny~AW~hR~wvL--~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~ 167 (450)
+-.++.+||+.=||.-+.=.-+.++. .+. +.-++.-.+++-.+.-+||=-..|+=-.-.-.+.+.. ...=..++++
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~-~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI-KYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 66788888888888554444443332 233 4667888899999999999999987332222222222 1233356777
Q ss_pred HHhccCCh-hHHHHHHHH
Q 013048 168 ICNNFSNY-SAWHNRSLL 184 (450)
Q Consensus 168 I~~npsNy-SAW~yR~~L 184 (450)
|....+=. --..|+.||
T Consensus 1661 i~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HhcCCChhHhHHHHHHHH
Confidence 77654332 224444444
No 248
>PRK10301 hypothetical protein; Provisional
Probab=35.88 E-value=2.8e+02 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=16.2
Q ss_pred ceEEeeccccccccccceEEeccc
Q 013048 280 PLVLYFNQAVEGVNSSTITVDSEL 303 (450)
Q Consensus 280 ~~~~~f~~~v~~~~~~~~~~~~~~ 303 (450)
-+.|.||.||+.. .++++|....
T Consensus 47 ~V~L~F~e~v~~~-~s~i~v~~~~ 69 (124)
T PRK10301 47 ALTLNFSEGIEPG-FSGATITGPK 69 (124)
T ss_pred EEEEEcCCCcccc-ccEEEEEcCC
Confidence 3889999999843 4567765443
No 249
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.49 E-value=5.2e+02 Score=26.71 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhCCCChHHHHHHHHHHH----HhCCCChhhhhHHHHHHHHcC--cChH
Q 013048 86 ILDEELRVVESALRQNF-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQ----KADSRNFHAWNYRRFVAASMN--RSEE 158 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nP-Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L----~~dpkNyhAW~yR~~vl~~L~--~~~e 158 (450)
.|.=-+..+.+++..|| ..+..-.--+-+-.+. ++.+-+-.+++.+= +++.--+.---+|...+-.++ .+ .
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~-GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~-a 269 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI-GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF-A 269 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch-H
Confidence 46666788888898884 4444333333333333 24433333444221 222222222223333333333 34 3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC---cchHHHHHH
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD---QSGWFYHLW 229 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d---eSaW~Y~r~ 229 (450)
+|.-++++.+..|++|.-|=+.+..++..+++ +.+++..+..+...+|.. +|.-+.++.
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~------------l~DAiK~~e~~~~~~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGK------------LKDALKQLEAMVQQDPRHYLHESVLFNLTT 331 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHH------------HHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence 68888899999999999999999999999886 689999999999999964 344444333
No 250
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.01 E-value=1.5e+02 Score=24.62 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.+++...+.+..||.|..+-+.....+..-+. ++++++.+..++..+|+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~------------~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGD------------YEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCccc
Confidence 36677788999999999988888777665543 688888888888887765
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=33.98 E-value=55 Score=22.01 Aligned_cols=25 Identities=4% Similarity=0.113 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 108 WHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 108 W~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
|..-+-+..+. +.+++++++|.++|
T Consensus 2 l~~Lg~~~~~~-g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQ-GDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHC-T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 33334444444 25555555555543
No 252
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=32.78 E-value=4.6e+02 Score=29.61 Aligned_cols=89 Identities=13% Similarity=-0.097 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH------HHHH
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR------KWIL 115 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR------~wvL 115 (450)
..+.-....+|..||++..+-..-...++-.+ ..+.-...+.+.+...-|++-..-.|+ +-++
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDG-----------LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 46677778888888888888777766666543 245566677888888999999999999 4444
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhh
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHA 142 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhA 142 (450)
.-++ ...+......++.++.|+|.+.
T Consensus 153 ~~l~-~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 153 KLLG-RTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHhc-cHHHHHHHHHHHHHhhhhhhhh
Confidence 4443 5566777778888888887444
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.79 E-value=2.2e+02 Score=29.03 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK 103 (450)
+++-=....|+| -++++-+..+|...|.+..|+..|+.+-..-.. ..++-.-+.++|..+|.
T Consensus 235 Ny~QC~L~~~e~-yevleh~seiL~~~~~nvKA~frRakAhaa~Wn------------~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 235 NYCQCLLKKEEY-YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN------------EAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHhhHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC------------HHHHHHHHHHHHhcChh
Confidence 333344455777 689999999999999999999999877655542 35666667777777774
No 254
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.72 E-value=1.3e+02 Score=30.17 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccccCC
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVD 238 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~~~ 238 (450)
...+.+.++++.-|.....|+-.+..-.+-+. +..+...+.+.+++||.|.-+=--+.-++++...++
T Consensus 13 aaaely~qal~lap~w~~gwfR~g~~~ekag~------------~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~ 80 (287)
T COG4976 13 AAAELYNQALELAPEWAAGWFRLGEYTEKAGE------------FDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPE 80 (287)
T ss_pred HHHHHHHHHhhcCchhhhhhhhcchhhhhccc------------HHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCC
Confidence 34455566666666666666544433222221 355566666666666666666555555665544444
Q ss_pred CC
Q 013048 239 SP 240 (450)
Q Consensus 239 ~~ 240 (450)
.|
T Consensus 81 ~p 82 (287)
T COG4976 81 KP 82 (287)
T ss_pred CC
Confidence 44
No 255
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.62 E-value=1.2e+02 Score=18.66 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKL 67 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~ 67 (450)
+++-.+++++|...|.+..+|..--.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 67888999999999999999986443
No 256
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=30.26 E-value=1.9e+02 Score=28.58 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCCChh------hhhHHHHHHHHc
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-----SSIDNELRLLDKFQKADSRNFH------AWNYRRFVAASM 153 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-----~~~~eEL~~~~k~L~~dpkNyh------AW~yR~~vl~~L 153 (450)
+.+.++..++.++....-+ ....++-...+.... ..+++++.++++++.+.-.+-. +...-+-++...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~-~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEK-LGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q ss_pred -CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc-chHHHHHHHH
Q 013048 154 -NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ-SGWFYHLWLL 231 (450)
Q Consensus 154 -~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de-SaW~Y~r~LL 231 (450)
+.++ +++++|.++++..-.+. .-+....++.++.. +....+.|+++++.+.+.+...-++. .-|..+..+|
T Consensus 128 ~~d~e-~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~-----l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 128 LGDYE-KAIEYYQKAAELYEQEG-SPHSAAECLLKAAD-----LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp T--HH-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH-----HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH-----HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
No 257
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=30.21 E-value=3.6e+02 Score=23.29 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHH
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTED 166 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk 166 (450)
+.+++++..+.+++..||-|-.+|.....++...|... ++++.|.+
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~-~A~~~Y~~ 121 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA-EALRVYER 121 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH-HHHHHHHH
Confidence 47888999999999999999999998888888888875 67776655
No 258
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=3.2e+02 Score=27.73 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
.++.++.+.++.+..+|.+...|.-|+.+...++-+. -+++-+...++.-|++..+=.-|..+..
T Consensus 196 ~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~-vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 196 QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH-VALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch-hhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5677888888888888888888888888888887764 5777777777777888777666665543
No 259
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=25.94 E-value=2.7e+02 Score=24.53 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHH---HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 159 DELKYTEDMICNNFSNYSAWHNR---SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR---~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
++|+.++++|..+.++.++|... |.++..+... .+....+...+...++++.++..+.|.-...-
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-TENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-ccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 67888888888888888766332 3344444321 11122233456889999999999999764333
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.24 E-value=5.9e+02 Score=25.72 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHH---HcCcChHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHhhhhhc
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAA---SMNRSEEDELKYTEDMICNNFSNY---SAWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~---~L~~~~eeELe~~dk~I~~npsNy---SAW~yR~~LL~~L~~~~~ 193 (450)
++|..+...|...++..|++-.+=+=+.|+-+ ..+.+. ++-..+...++..|+.. .+..-.+.++..+++
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~-~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~--- 230 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYE-DAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN--- 230 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccch-HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC---
Confidence 46888999999999999887666555555544 346675 67778888888777665 446666666666654
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 194 ~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
-+++-..+.+++..+|+...+=
T Consensus 231 ---------~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 231 ---------TDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ---------HHHHHHHHHHHHHHCCCCHHHH
Confidence 3778888888999999877653
No 261
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=24.38 E-value=3e+02 Score=22.84 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
..+....+.+..||++..+-......+..-+ .++++++.+-.+++.++..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g------------~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAG------------DYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-------------HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCccc
Confidence 3577789999999999999998888877766 4899999999999888654
No 262
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.43 E-value=1.4e+02 Score=30.00 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=59.8
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
.+.+.+ +.+.+++.++|.+-|+...-|..-+..-.+-+ .+..+.+-+++.|+++|..-..=.+|--+
T Consensus 6 ~~~~D~-~aaaely~qal~lap~w~~gwfR~g~~~ekag------------~~daAa~a~~~~L~ldp~D~~gaa~kLa~ 72 (287)
T COG4976 6 AESGDA-EAAAELYNQALELAPEWAAGWFRLGEYTEKAG------------EFDAAAAAYEEVLELDPEDHGGAALKLAV 72 (287)
T ss_pred cccCCh-HHHHHHHHHHhhcCchhhhhhhhcchhhhhcc------------cHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence 356677 78899999999999999999998777655544 47889999999999999999988889888
Q ss_pred HHhC
Q 013048 115 LSKG 118 (450)
Q Consensus 115 L~kl 118 (450)
|.+.
T Consensus 73 lg~~ 76 (287)
T COG4976 73 LGRG 76 (287)
T ss_pred hcCC
Confidence 8764
No 263
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=22.45 E-value=1.4e+03 Score=27.40 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHHHhCC---CChHHHHHHHHHH-HhCC-----CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 85 SILDEELRVVESALRQNF---KSYGAWHHRKWIL-SKGH-----SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nP---Kny~AW~hR~wvL-~kl~-----~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
+.|++++.+|.++-...| ..|.|-.--+..+ .+.. ..++++|.-++++ .--|--.--+--++.|.+.++.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhh
Confidence 779999999999998887 4466654334433 3321 1356666666653 3345445556678888999999
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 156 ~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
++ +|++++.-+++..|...-.=.-|-.++.+|... ...-=..++-+..-++..-|.....=.
T Consensus 568 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 568 YN-EEIKSLLLALKRYSQHPEISRLRDHLVYRLHES-------LYKHRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred HH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhCcccccchH
Confidence 97 899999999999999887777777787777631 001115566777778888887766554
No 264
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=1.1e+03 Score=26.79 Aligned_cols=117 Identities=7% Similarity=-0.199 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHH--HHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 013048 45 VELSTKLLETNPELYTAWNYRK--LAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (450)
Q Consensus 45 L~lt~~~L~~NPd~ytAWn~Rr--~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~ 122 (450)
+..+..-+.+||.+.+.---+- ..+..++ .-..+.-..+.++..||.+..+-..-.-.+...+..+
T Consensus 51 ~~a~~~~~~~~~~~~~llla~~lsi~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~ 118 (620)
T COG3914 51 IYALLLGIAINDVNPELLLAAFLSILLAPLA------------DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF 118 (620)
T ss_pred HHHHHccCccCCCCHHHHHHHHHHhhccccc------------cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH
Confidence 3344444457788777644432 2222221 2346777888999999999999988888887654455
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHH------HHHHHHcCcChHHHHHHHHHHHHhccCC
Q 013048 123 DNELRLLDKFQKADSRNFHAWNYR------RFVAASMNRSEEDELKYTEDMICNNFSN 174 (450)
Q Consensus 123 ~eEL~~~~k~L~~dpkNyhAW~yR------~~vl~~L~~~~eeELe~~dk~I~~npsN 174 (450)
.-....+..+...-|+|-..-.|+ +.++..+++.. +......++.+..|.+
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 119 LALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA-EAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhhhhh
Confidence 667777788899999999999999 66666666664 5566667777777777
No 265
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=21.41 E-value=1.3e+03 Score=27.65 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 39 IYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 39 eyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
.| ++||..|.++-.-.|.- |.|=..-|..+..... +..|| ..+.++|.-++++- --|--+--+-.+.-|.
T Consensus 490 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 490 LY-DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-EQGDP----RDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HH-HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-hcCCh----HHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 45 56666676666666544 3333333443333221 12232 34566666665543 3444555555566666
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM 153 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L 153 (450)
++++ .|++|++++..+++..|....-=.-|-.++.+|
T Consensus 563 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 563 QRLG-EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHhh-hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 6663 666666666666666665554444444444443
No 266
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=21.28 E-value=1.8e+02 Score=24.45 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=52.0
Q ss_pred CCCCccceEEeeccccccccccceEEecccCcCccceeeeCCCCCCccceeEEEeccCCCCCCCCCccccEEEecCcccc
Q 013048 274 LDSRTFPLVLYFNQAVEGVNSSTITVDSELNTNKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQG 353 (450)
Q Consensus 274 ~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (450)
...+++.+.+.-..+-.++.+=.+.+=|+.|+..+|.|-.+. +. ..-.|....++.+-... ...|.|.|++...+|
T Consensus 8 ~~~g~~~v~v~~~~~~~~i~~V~~aVWSe~nGQdDL~WY~a~-k~--~dg~y~~~i~~~nH~~~-~G~Y~vhvY~~~~~G 83 (95)
T PF08481_consen 8 QTNGTFTVTVTNVSSPKGIKSVKFAVWSEENGQDDLKWYTAT-KQ--SDGSYSVTIDLSNHKNE-TGTYHVHVYITDADG 83 (95)
T ss_pred CCCCeEEEEEEeccCCCCeeEEEEEEEcCCCCCCccEEEEee-ec--CCCcEEEEEeHHHCCCC-ccEEEEEEEEEcCCC
Confidence 456788888877766666666678888999999999999985 22 22356666666332211 258888888555544
Q ss_pred c
Q 013048 354 I 354 (450)
Q Consensus 354 ~ 354 (450)
.
T Consensus 84 ~ 84 (95)
T PF08481_consen 84 K 84 (95)
T ss_pred c
Confidence 3
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=9.8e+02 Score=24.76 Aligned_cols=124 Identities=15% Similarity=0.044 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH-
Q 013048 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG- 106 (450)
Q Consensus 28 ~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~- 106 (450)
+..-+.....|.+ .++..++..++...|++..+=-.-.+++...+. .+.+ ..+|...|-...
T Consensus 138 ~~~~~~~~~~e~~-~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~------------~e~A----~~iL~~lP~~~~~ 200 (304)
T COG3118 138 LAEAKELIEAEDF-GEAAPLLKQALQAAPENSEAKLLLAECLLAAGD------------VEAA----QAILAALPLQAQD 200 (304)
T ss_pred HHHhhhhhhccch-hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC------------hHHH----HHHHHhCcccchh
Confidence 3445567788999 899999999999999998888888888877763 2333 333334443332
Q ss_pred -HHHH---HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 107 -AWHH---RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 107 -AW~h---R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
+|+- |--++.+.. . ..+..-+.+.+..||.|+.+=.--...+...|+++ ++++-.-.++++|
T Consensus 201 ~~~~~l~a~i~ll~qaa-~-~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e-~Ale~Ll~~l~~d 266 (304)
T COG3118 201 KAAHGLQAQIELLEQAA-A-TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNE-AALEHLLALLRRD 266 (304)
T ss_pred hHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc
Confidence 3332 223344432 1 23566677778999999988554455555556664 6776555555443
No 268
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.07 E-value=1.2e+03 Score=25.97 Aligned_cols=148 Identities=12% Similarity=0.156 Sum_probs=99.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHH
Q 013048 48 STKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELR 127 (450)
Q Consensus 48 t~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~ 127 (450)
++-.|..|--+...|..=+..=.. +..+..+-..+++||..+..|.+.|.--.-+-.+. .....+-.
T Consensus 62 fEd~irrnR~~~~~WikYaqwEes------------q~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARN 128 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEES------------QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHH
Confidence 444555666566666533222111 34689999999999999999999997443333333 25678999
Q ss_pred HHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHH-HHHHHHHHhhhhhccCccchhchHHHH
Q 013048 128 LLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH-NRSLLLSNLLKRKVEGFVSKEKVLPDE 206 (450)
Q Consensus 128 ~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~-yR~~LL~~L~~~~~~g~~~~~~ileeE 206 (450)
+.++++.+-|+=-.-|.--..+=..||... .+-+.+++|++-.|.-. ||+ |-.+=|..- -.+.+
T Consensus 129 v~dRAvt~lPRVdqlWyKY~ymEE~LgNi~-gaRqiferW~~w~P~eq-aW~sfI~fElRyk-------------eiera 193 (677)
T KOG1915|consen 129 VWDRAVTILPRVDQLWYKYIYMEEMLGNIA-GARQIFERWMEWEPDEQ-AWLSFIKFELRYK-------------EIERA 193 (677)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhcccH-HHHHHHHHHHcCCCcHH-HHHHHHHHHHHhh-------------HHHHH
Confidence 999999999999999987666667777764 68888999999999765 553 333322211 12444
Q ss_pred HHHHHHHHHhCCCCcchH
Q 013048 207 YEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 207 Le~v~~AI~~dP~deSaW 224 (450)
-+-|.+.+-.+|+ .+.|
T Consensus 194 R~IYerfV~~HP~-v~~w 210 (677)
T KOG1915|consen 194 RSIYERFVLVHPK-VSNW 210 (677)
T ss_pred HHHHHHHheeccc-HHHH
Confidence 4555566666663 3444
Done!