Query 013048
Match_columns 450
No_of_seqs 205 out of 1179
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dce_A Protein (RAB geranylger 100.0 7.1E-55 2.4E-59 468.0 33.5 319 1-353 1-327 (567)
2 3dss_A Geranylgeranyl transfer 100.0 1.1E-49 3.8E-54 403.1 27.0 234 1-236 2-242 (331)
3 3q7a_A Farnesyltransferase alp 100.0 1.5E-47 5.2E-52 389.9 17.7 230 10-255 39-276 (349)
4 3dra_A Protein farnesyltransfe 100.0 2.1E-44 7.1E-49 360.4 21.4 211 10-236 18-235 (306)
5 3dra_A Protein farnesyltransfe 100.0 3E-31 1E-35 265.2 19.1 188 39-233 84-305 (306)
6 3dss_A Geranylgeranyl transfer 100.0 1.3E-29 4.3E-34 256.3 20.8 176 42-231 91-280 (331)
7 3q7a_A Farnesyltransferase alp 99.9 1.2E-27 4E-32 243.5 15.9 168 52-236 47-216 (349)
8 2h6f_A Protein farnesyltransfe 99.9 1.9E-25 6.4E-30 228.6 23.4 195 21-235 93-288 (382)
9 1dce_A Protein (RAB geranylger 99.9 2.4E-24 8.3E-29 231.1 14.3 136 88-234 46-191 (567)
10 2h6f_A Protein farnesyltransfe 99.8 1E-20 3.5E-25 193.5 13.9 162 50-236 88-249 (382)
11 2pl2_A Hypothetical conserved 99.7 8.5E-16 2.9E-20 142.3 21.4 180 31-238 12-202 (217)
12 3vtx_A MAMA; tetratricopeptide 99.7 5.7E-16 1.9E-20 137.1 18.6 161 34-221 15-175 (184)
13 4i17_A Hypothetical protein; T 99.6 7.3E-14 2.5E-18 127.9 21.8 186 31-231 14-224 (228)
14 4gyw_A UDP-N-acetylglucosamine 99.6 3.9E-14 1.3E-18 156.2 18.5 159 33-218 18-176 (723)
15 2pzi_A Probable serine/threoni 99.6 2.7E-14 9.3E-19 155.3 15.9 174 32-233 399-580 (681)
16 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7.2E-18 141.6 20.5 175 34-235 112-306 (474)
17 3urz_A Uncharacterized protein 99.5 1.1E-13 3.7E-18 127.2 15.6 175 26-228 6-197 (208)
18 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-13 5E-18 151.7 19.3 156 54-235 4-159 (723)
19 1w3b_A UDP-N-acetylglucosamine 99.5 9.2E-13 3.1E-17 129.6 22.3 103 86-190 150-252 (388)
20 3hym_B Cell division cycle pro 99.5 3.9E-13 1.3E-17 127.0 18.7 183 27-235 25-207 (330)
21 3vtx_A MAMA; tetratricopeptide 99.5 8.9E-13 3E-17 116.4 19.4 155 56-236 2-156 (184)
22 4eqf_A PEX5-related protein; a 99.5 8E-13 2.7E-17 128.7 20.9 178 33-236 74-296 (365)
23 1w3b_A UDP-N-acetylglucosamine 99.5 1.3E-12 4.5E-17 128.5 22.0 174 36-236 45-218 (388)
24 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-12 8.5E-17 116.6 22.1 170 34-230 67-236 (243)
25 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.1E-17 118.8 18.3 177 33-236 32-208 (243)
26 2vq2_A PILW, putative fimbrial 99.5 6.8E-12 2.3E-16 111.8 22.7 174 31-231 15-192 (225)
27 2ho1_A Type 4 fimbrial biogene 99.5 3.1E-12 1.1E-16 117.5 21.0 182 25-233 38-221 (252)
28 3hym_B Cell division cycle pro 99.5 3E-12 1E-16 120.8 20.7 184 35-233 101-316 (330)
29 4gco_A Protein STI-1; structur 99.5 3.2E-13 1.1E-17 115.6 12.6 123 49-185 3-125 (126)
30 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.3E-17 120.8 17.3 154 56-236 2-166 (217)
31 3ieg_A DNAJ homolog subfamily 99.5 4.1E-12 1.4E-16 120.7 21.2 175 31-232 10-199 (359)
32 3uq3_A Heat shock protein STI1 99.5 2.9E-12 1E-16 116.6 19.3 176 32-235 13-221 (258)
33 3u4t_A TPR repeat-containing p 99.5 2.8E-12 9.5E-17 118.9 17.9 176 31-235 10-190 (272)
34 4eqf_A PEX5-related protein; a 99.4 3E-12 1E-16 124.6 18.9 189 33-236 108-342 (365)
35 4gco_A Protein STI-1; structur 99.4 6.9E-13 2.3E-17 113.5 12.6 122 96-231 4-125 (126)
36 1fch_A Peroxisomal targeting s 99.4 1.3E-11 4.4E-16 119.2 22.8 176 33-235 73-299 (368)
37 2y4t_A DNAJ homolog subfamily 99.4 4.4E-12 1.5E-16 126.2 20.0 180 25-231 27-221 (450)
38 4ga2_A E3 SUMO-protein ligase 99.4 3.7E-13 1.3E-17 118.0 10.7 140 36-189 9-148 (150)
39 3uq3_A Heat shock protein STI1 99.4 4.3E-12 1.5E-16 115.5 18.0 182 32-228 46-254 (258)
40 3as5_A MAMA; tetratricopeptide 99.4 1E-11 3.5E-16 106.8 18.2 167 31-224 15-181 (186)
41 1fch_A Peroxisomal targeting s 99.4 2.1E-11 7.3E-16 117.6 21.8 189 33-236 107-345 (368)
42 3u4t_A TPR repeat-containing p 99.4 1E-11 3.6E-16 115.0 18.2 169 37-233 87-267 (272)
43 3ieg_A DNAJ homolog subfamily 99.4 9.2E-11 3.1E-15 111.4 24.8 176 31-233 127-318 (359)
44 4abn_A Tetratricopeptide repea 99.4 1.1E-11 3.6E-16 128.8 19.3 176 42-236 85-273 (474)
45 2vsy_A XCC0866; transferase, g 99.4 9E-12 3.1E-16 130.8 18.7 162 37-225 2-166 (568)
46 4i17_A Hypothetical protein; T 99.4 1.1E-11 3.7E-16 113.4 16.9 152 56-233 4-165 (228)
47 3cv0_A Peroxisome targeting si 99.4 2.1E-11 7.1E-16 114.9 19.0 174 35-234 32-253 (327)
48 4ga2_A E3 SUMO-protein ligase 99.4 2.3E-12 8E-17 112.9 11.5 137 84-234 10-147 (150)
49 2ho1_A Type 4 fimbrial biogene 99.4 6.6E-11 2.2E-15 108.6 21.6 168 33-227 80-249 (252)
50 3qky_A Outer membrane assembly 99.4 5.2E-11 1.8E-15 111.5 21.2 182 26-224 17-232 (261)
51 2vq2_A PILW, putative fimbrial 99.4 7.2E-11 2.5E-15 105.1 21.1 168 33-227 51-222 (225)
52 2y4t_A DNAJ homolog subfamily 99.4 8.6E-11 2.9E-15 116.8 23.3 183 34-231 153-373 (450)
53 2xpi_A Anaphase-promoting comp 99.3 5.7E-11 2E-15 122.8 21.5 183 34-231 383-594 (597)
54 3cv0_A Peroxisome targeting si 99.3 2E-11 6.7E-16 115.1 16.5 189 33-236 64-301 (327)
55 2ond_A Cleavage stimulation fa 99.3 4.2E-11 1.4E-15 116.0 17.9 178 42-233 33-215 (308)
56 3fp2_A TPR repeat-containing p 99.3 9.9E-11 3.4E-15 118.8 21.4 187 34-236 253-477 (537)
57 1xnf_A Lipoprotein NLPI; TPR, 99.3 3.4E-10 1.2E-14 104.4 22.8 187 31-233 50-261 (275)
58 2xpi_A Anaphase-promoting comp 99.3 1.2E-10 4.2E-15 120.3 22.0 189 33-236 348-565 (597)
59 1xnf_A Lipoprotein NLPI; TPR, 99.3 7.4E-11 2.5E-15 108.9 18.2 168 37-232 18-189 (275)
60 4g1t_A Interferon-induced prot 99.3 5.5E-11 1.9E-15 119.5 18.5 188 36-234 150-347 (472)
61 3gyz_A Chaperone protein IPGC; 99.3 1.4E-11 4.7E-16 109.9 11.6 126 29-175 13-138 (151)
62 2gw1_A Mitochondrial precursor 99.3 9.4E-11 3.2E-15 117.8 18.8 182 35-231 281-493 (514)
63 3gyz_A Chaperone protein IPGC; 99.3 9.1E-12 3.1E-16 111.1 9.3 118 90-221 21-138 (151)
64 2ond_A Cleavage stimulation fa 99.3 1.4E-10 5E-15 112.2 18.3 171 36-232 69-252 (308)
65 3fp2_A TPR repeat-containing p 99.3 1.4E-10 4.8E-15 117.7 18.7 144 59-229 243-386 (537)
66 2gw1_A Mitochondrial precursor 99.3 1.2E-10 4.1E-15 117.1 17.9 194 26-235 239-463 (514)
67 3mkr_A Coatomer subunit epsilo 99.3 6.1E-10 2.1E-14 108.3 21.7 166 37-234 78-247 (291)
68 4g1t_A Interferon-induced prot 99.2 3E-10 1E-14 114.1 19.9 175 33-231 103-291 (472)
69 2pzi_A Probable serine/threoni 99.2 5.5E-11 1.9E-15 129.2 15.1 140 32-187 441-580 (681)
70 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.2E-09 4.1E-14 100.9 19.8 168 29-222 9-219 (225)
71 2vgx_A Chaperone SYCD; alterna 99.2 2.6E-10 8.7E-15 99.9 14.3 124 47-184 9-132 (148)
72 2vgx_A Chaperone SYCD; alterna 99.2 2.1E-10 7.1E-15 100.5 13.1 124 92-229 8-131 (148)
73 3mkr_A Coatomer subunit epsilo 99.2 1E-09 3.4E-14 106.7 18.9 163 33-226 110-274 (291)
74 2r5s_A Uncharacterized protein 99.2 1.1E-10 3.9E-15 103.6 10.8 158 31-215 13-172 (176)
75 2xcb_A PCRH, regulatory protei 99.2 2.4E-10 8.1E-15 98.2 12.2 127 46-186 5-131 (142)
76 1p5q_A FKBP52, FK506-binding p 99.1 2.2E-10 7.7E-15 113.6 12.7 135 42-190 130-279 (336)
77 3upv_A Heat shock protein STI1 99.1 1.1E-09 3.6E-14 91.2 14.5 118 56-187 1-124 (126)
78 2xcb_A PCRH, regulatory protei 99.1 2.4E-10 8.1E-15 98.2 10.7 125 92-230 5-129 (142)
79 2hr2_A Hypothetical protein; a 99.1 2.3E-10 7.7E-15 104.3 9.7 106 106-225 12-140 (159)
80 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.5E-14 105.2 15.5 162 27-215 120-283 (287)
81 3sz7_A HSC70 cochaperone (SGT) 99.1 1.5E-09 5E-14 94.9 14.2 117 54-184 6-122 (164)
82 3as5_A MAMA; tetratricopeptide 99.1 3.7E-09 1.3E-13 90.6 16.2 150 59-234 8-157 (186)
83 3urz_A Uncharacterized protein 99.1 2.4E-09 8.1E-14 98.1 15.9 137 58-218 3-155 (208)
84 1qqe_A Vesicular transport pro 99.1 3.2E-09 1.1E-13 102.2 17.1 166 34-225 47-237 (292)
85 2e2e_A Formate-dependent nitri 99.1 1.5E-09 5.1E-14 95.4 13.5 129 35-178 21-152 (177)
86 2e2e_A Formate-dependent nitri 99.1 2.3E-09 7.7E-14 94.2 14.4 132 85-229 24-157 (177)
87 3upv_A Heat shock protein STI1 99.1 1.5E-09 5E-14 90.3 12.0 117 102-232 1-123 (126)
88 2hr2_A Hypothetical protein; a 99.1 8.5E-10 2.9E-14 100.5 11.1 107 59-179 11-140 (159)
89 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 3.9E-10 1.3E-14 116.7 10.1 135 42-190 251-400 (457)
90 3sz7_A HSC70 cochaperone (SGT) 99.0 2.2E-09 7.6E-14 93.7 13.4 116 100-229 6-121 (164)
91 3qky_A Outer membrane assembly 99.0 6.3E-09 2.2E-13 97.3 17.2 156 52-233 8-197 (261)
92 3qou_A Protein YBBN; thioredox 99.0 7.2E-09 2.5E-13 100.0 17.6 171 38-236 98-270 (287)
93 2ooe_A Cleavage stimulation fa 99.0 6.8E-09 2.3E-13 107.7 17.7 173 42-233 255-437 (530)
94 2r5s_A Uncharacterized protein 99.0 1.4E-09 4.8E-14 96.5 10.8 155 55-236 2-159 (176)
95 2fo7_A Synthetic consensus TPR 99.0 2.8E-08 9.6E-13 80.1 17.1 135 60-220 2-136 (136)
96 1p5q_A FKBP52, FK506-binding p 99.0 1.4E-08 4.6E-13 100.7 17.6 126 29-168 152-292 (336)
97 2lni_A Stress-induced-phosphop 99.0 1E-08 3.5E-13 83.9 14.0 121 54-188 11-131 (133)
98 2ooe_A Cleavage stimulation fa 99.0 2.6E-08 9E-13 103.3 20.3 169 37-231 292-474 (530)
99 2fo7_A Synthetic consensus TPR 99.0 4.7E-08 1.6E-12 78.8 17.3 125 35-174 12-136 (136)
100 2c2l_A CHIP, carboxy terminus 99.0 7E-09 2.4E-13 99.9 14.4 165 31-227 11-175 (281)
101 1a17_A Serine/threonine protei 99.0 4.4E-08 1.5E-12 83.3 17.8 126 27-167 16-143 (166)
102 2vyi_A SGTA protein; chaperone 98.9 1.7E-08 6E-13 81.6 14.0 124 53-190 6-129 (131)
103 1a17_A Serine/threonine protei 98.9 6.9E-08 2.3E-12 82.1 18.3 134 58-215 12-145 (166)
104 2vyi_A SGTA protein; chaperone 98.9 4.7E-08 1.6E-12 79.0 16.4 116 27-156 15-130 (131)
105 2vsy_A XCC0866; transferase, g 98.9 1.5E-08 5.2E-13 106.2 16.6 136 32-182 31-169 (568)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.4E-08 1.8E-12 87.1 16.9 135 61-224 8-158 (213)
107 2lni_A Stress-induced-phosphop 98.9 5.6E-08 1.9E-12 79.4 15.4 110 31-154 23-132 (133)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.5E-08 1.9E-12 87.0 16.8 128 30-175 12-155 (213)
109 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 1.7E-08 5.7E-13 104.5 15.1 123 27-163 271-408 (457)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 8E-08 2.7E-12 88.6 17.8 165 58-236 3-199 (225)
111 3q49_B STIP1 homology and U bo 98.9 4.9E-08 1.7E-12 81.2 14.9 120 53-186 3-127 (137)
112 3q49_B STIP1 homology and U bo 98.9 2.5E-08 8.5E-13 83.0 12.7 119 99-231 3-126 (137)
113 3rkv_A Putative peptidylprolyl 98.9 2.9E-08 9.9E-13 86.4 13.4 96 31-140 18-131 (162)
114 3rkv_A Putative peptidylprolyl 98.9 3.7E-08 1.3E-12 85.7 13.8 119 58-190 10-147 (162)
115 2dba_A Smooth muscle cell asso 98.8 6.4E-08 2.2E-12 80.7 14.4 121 99-233 22-145 (148)
116 3nf1_A KLC 1, kinesin light ch 98.8 4.5E-08 1.6E-12 91.2 14.6 177 28-231 31-248 (311)
117 1hxi_A PEX5, peroxisome target 98.8 2.8E-08 9.5E-13 83.9 11.8 102 106-221 18-119 (121)
118 3nf1_A KLC 1, kinesin light ch 98.8 6.2E-08 2.1E-12 90.3 15.1 160 33-219 78-310 (311)
119 1qqe_A Vesicular transport pro 98.8 2E-08 7E-13 96.6 12.0 174 33-226 86-279 (292)
120 2fbn_A 70 kDa peptidylprolyl i 98.8 1.5E-08 5E-13 91.2 10.3 130 47-190 26-171 (198)
121 2if4_A ATFKBP42; FKBP-like, al 98.8 1.7E-08 5.9E-13 100.2 11.7 133 29-175 184-333 (338)
122 2kck_A TPR repeat; tetratricop 98.8 3.2E-08 1.1E-12 78.2 10.8 108 100-221 1-111 (112)
123 1elw_A TPR1-domain of HOP; HOP 98.8 1.5E-07 5.1E-12 74.8 14.8 101 34-148 14-114 (118)
124 1wao_1 Serine/threonine protei 98.8 1.1E-08 3.8E-13 106.7 10.4 132 35-181 17-161 (477)
125 3edt_B KLC 2, kinesin light ch 98.8 6.6E-08 2.3E-12 88.4 14.3 168 37-231 14-222 (283)
126 2kck_A TPR repeat; tetratricop 98.8 3.3E-08 1.1E-12 78.2 10.6 108 54-175 1-111 (112)
127 4a1s_A PINS, partner of inscut 98.8 4.7E-08 1.6E-12 96.0 14.1 183 24-233 48-275 (411)
128 1elw_A TPR1-domain of HOP; HOP 98.8 1.4E-07 4.9E-12 74.9 14.5 114 58-185 3-116 (118)
129 2fbn_A 70 kDa peptidylprolyl i 98.8 7.7E-08 2.6E-12 86.4 14.3 120 23-156 37-172 (198)
130 2dba_A Smooth muscle cell asso 98.8 1.5E-07 5E-12 78.5 14.9 118 53-184 22-142 (148)
131 3edt_B KLC 2, kinesin light ch 98.8 1.4E-07 4.9E-12 86.1 16.0 124 32-170 51-198 (283)
132 1hxi_A PEX5, peroxisome target 98.8 3.3E-08 1.1E-12 83.4 10.8 90 36-139 29-118 (121)
133 1na0_A Designed protein CTPR3; 98.8 2.9E-07 9.8E-12 73.7 15.8 120 54-187 3-123 (125)
134 1ouv_A Conserved hypothetical 98.8 1.2E-06 4.2E-11 81.7 21.5 129 87-233 94-230 (273)
135 2if4_A ATFKBP42; FKBP-like, al 98.7 7.8E-09 2.7E-13 102.7 6.4 145 52-221 172-333 (338)
136 3sf4_A G-protein-signaling mod 98.7 1.1E-07 3.8E-12 92.0 14.2 173 33-232 18-238 (406)
137 4gcn_A Protein STI-1; structur 98.7 8.4E-08 2.9E-12 81.4 11.4 110 105-221 8-117 (127)
138 1zu2_A Mitochondrial import re 98.7 6.7E-08 2.3E-12 87.8 11.1 115 85-226 16-130 (158)
139 1zu2_A Mitochondrial import re 98.7 5.4E-08 1.9E-12 88.5 10.3 97 42-140 19-125 (158)
140 4gcn_A Protein STI-1; structur 98.7 8E-08 2.7E-12 81.6 10.6 105 56-174 5-116 (127)
141 1na0_A Designed protein CTPR3; 98.7 1.2E-06 4.2E-11 69.9 16.3 108 32-153 17-124 (125)
142 1wao_1 Serine/threonine protei 98.7 4.9E-08 1.7E-12 101.9 10.1 98 85-184 20-117 (477)
143 2c2l_A CHIP, carboxy terminus 98.7 2.5E-07 8.5E-12 89.0 14.2 147 56-231 1-147 (281)
144 3ro2_A PINS homolog, G-protein 98.7 2.8E-07 9.5E-12 85.8 13.8 174 33-233 14-235 (338)
145 2qfc_A PLCR protein; TPR, HTH, 98.7 3.9E-06 1.3E-10 80.1 22.1 168 22-216 73-266 (293)
146 4f3v_A ESX-1 secretion system 98.7 5.6E-08 1.9E-12 96.0 9.3 185 21-224 4-244 (282)
147 3ulq_A Response regulator aspa 98.6 5.3E-07 1.8E-11 88.9 16.1 157 34-217 113-294 (383)
148 1ouv_A Conserved hypothetical 98.6 5.6E-06 1.9E-10 77.2 22.3 158 37-231 19-192 (273)
149 3k9i_A BH0479 protein; putativ 98.6 7.1E-08 2.4E-12 79.8 8.3 103 37-153 3-108 (117)
150 1ihg_A Cyclophilin 40; ppiase 98.6 1.8E-07 6E-12 94.6 12.3 114 28-155 227-356 (370)
151 3u3w_A Transcriptional activat 98.6 1.7E-06 5.9E-11 82.6 17.3 167 26-216 77-266 (293)
152 2ifu_A Gamma-SNAP; membrane fu 98.6 6.7E-07 2.3E-11 86.6 14.4 162 34-224 46-231 (307)
153 2xev_A YBGF; tetratricopeptide 98.6 2.1E-06 7E-11 70.4 15.3 104 33-150 11-120 (129)
154 3k9i_A BH0479 protein; putativ 98.6 8.9E-08 3.1E-12 79.2 6.4 97 122-231 6-105 (117)
155 1elr_A TPR2A-domain of HOP; HO 98.5 1.3E-06 4.5E-11 70.5 13.2 119 56-189 1-126 (131)
156 1ihg_A Cyclophilin 40; ppiase 98.5 9.2E-07 3.1E-11 89.3 13.5 118 59-190 223-356 (370)
157 4a1s_A PINS, partner of inscut 98.5 3.4E-07 1.2E-11 89.9 9.7 159 35-220 97-296 (411)
158 3sf4_A G-protein-signaling mod 98.5 4.2E-07 1.4E-11 88.0 10.3 161 33-220 56-260 (406)
159 2xev_A YBGF; tetratricopeptide 98.5 4.3E-06 1.5E-10 68.5 14.2 109 62-184 5-119 (129)
160 1elr_A TPR2A-domain of HOP; HO 98.4 2.5E-06 8.7E-11 68.8 12.3 116 103-233 2-124 (131)
161 3ro2_A PINS homolog, G-protein 98.4 1.2E-06 4.1E-11 81.4 11.1 161 33-220 52-256 (338)
162 2kat_A Uncharacterized protein 98.4 2.8E-06 9.5E-11 69.4 10.6 99 89-189 3-103 (115)
163 2kat_A Uncharacterized protein 98.3 3.4E-06 1.2E-10 68.8 10.7 86 43-141 3-88 (115)
164 3q15_A PSP28, response regulat 98.3 1.8E-05 6E-10 78.0 17.6 158 35-219 112-293 (378)
165 1na3_A Designed protein CTPR2; 98.1 2.6E-05 8.8E-10 59.8 11.3 82 58-152 8-89 (91)
166 2l6j_A TPR repeat-containing p 98.1 2E-05 6.9E-10 62.5 10.9 52 87-139 20-71 (111)
167 3gw4_A Uncharacterized protein 98.1 3.2E-05 1.1E-09 67.8 13.2 162 35-224 3-184 (203)
168 2kc7_A BFR218_protein; tetratr 98.1 5.4E-06 1.8E-10 65.5 7.1 84 34-139 10-94 (99)
169 3ulq_A Response regulator aspa 98.1 2.7E-05 9.2E-10 76.6 13.6 148 61-234 105-277 (383)
170 2l6j_A TPR repeat-containing p 98.1 1.9E-05 6.6E-10 62.6 10.3 85 104-190 3-93 (111)
171 1na3_A Designed protein CTPR2; 98.1 2.3E-05 8E-10 60.0 10.0 84 103-188 7-90 (91)
172 2ifu_A Gamma-SNAP; membrane fu 98.0 1.9E-05 6.4E-10 76.3 10.2 144 37-222 29-190 (307)
173 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00015 5E-09 69.1 16.3 136 85-234 89-249 (293)
174 3rjv_A Putative SEL1 repeat pr 98.0 8.6E-05 3E-09 67.9 13.7 125 43-186 4-136 (212)
175 2kc7_A BFR218_protein; tetratr 98.0 1.5E-05 5.1E-10 62.9 7.4 89 112-222 7-96 (99)
176 3ma5_A Tetratricopeptide repea 98.0 2.2E-05 7.4E-10 63.4 8.1 76 100-177 2-77 (100)
177 3ma5_A Tetratricopeptide repea 98.0 2.2E-05 7.4E-10 63.4 8.1 76 54-142 2-77 (100)
178 3u3w_A Transcriptional activat 97.8 0.00015 5.1E-09 69.0 12.9 121 36-170 127-266 (293)
179 3rjv_A Putative SEL1 repeat pr 97.8 0.0013 4.4E-08 60.0 17.2 161 36-218 30-199 (212)
180 3ro3_A PINS homolog, G-protein 97.7 0.00051 1.7E-08 56.5 12.5 133 60-218 10-160 (164)
181 1hz4_A MALT regulatory protein 97.6 0.0011 3.6E-08 64.4 15.3 157 35-218 25-205 (373)
182 3ro3_A PINS homolog, G-protein 97.6 0.00074 2.5E-08 55.5 12.0 124 34-172 19-160 (164)
183 3ly7_A Transcriptional activat 97.6 0.0019 6.5E-08 66.0 17.1 162 48-233 183-355 (372)
184 2xm6_A Protein corresponding t 97.6 0.0015 5.3E-08 66.6 16.4 167 37-228 272-447 (490)
185 4f3v_A ESX-1 secretion system 97.6 0.00024 8.3E-09 70.0 9.8 132 30-178 108-244 (282)
186 3q15_A PSP28, response regulat 97.5 0.00061 2.1E-08 66.9 12.2 148 61-234 103-274 (378)
187 2xm6_A Protein corresponding t 97.4 0.008 2.7E-07 61.3 19.2 167 42-234 240-412 (490)
188 3e4b_A ALGK; tetratricopeptide 97.4 0.0044 1.5E-07 63.4 16.8 162 43-233 163-330 (452)
189 3e4b_A ALGK; tetratricopeptide 97.4 0.0051 1.7E-07 63.0 17.1 169 39-235 194-368 (452)
190 3ly7_A Transcriptional activat 97.3 0.0017 5.7E-08 66.5 12.3 129 42-175 216-344 (372)
191 3gw4_A Uncharacterized protein 97.3 0.0022 7.4E-08 55.9 11.4 129 32-175 34-181 (203)
192 4e6h_A MRNA 3'-END-processing 97.1 0.0096 3.3E-07 65.2 16.3 165 42-231 326-515 (679)
193 1hz4_A MALT regulatory protein 97.0 0.016 5.5E-07 56.0 15.3 123 34-171 63-204 (373)
194 1xi4_A Clathrin heavy chain; a 97.0 0.027 9.3E-07 66.3 19.2 169 32-233 1113-1326(1630)
195 3mv2_B Coatomer subunit epsilo 96.7 0.018 6.3E-07 57.3 13.6 159 36-225 112-291 (310)
196 1xi4_A Clathrin heavy chain; a 96.6 0.049 1.7E-06 64.2 18.0 139 56-225 1102-1254(1630)
197 4b4t_Q 26S proteasome regulato 96.6 0.026 8.8E-07 55.4 13.7 160 33-218 13-206 (434)
198 3bee_A Putative YFRE protein; 96.6 0.01 3.5E-07 48.2 8.7 74 55-138 2-75 (93)
199 4e6h_A MRNA 3'-END-processing 96.3 0.11 3.7E-06 56.8 17.4 164 37-226 356-546 (679)
200 3bee_A Putative YFRE protein; 96.1 0.04 1.4E-06 44.6 10.0 64 28-103 12-75 (93)
201 1pc2_A Mitochondria fission pr 96.1 0.072 2.5E-06 47.8 12.4 103 87-190 14-120 (152)
202 1pc2_A Mitochondria fission pr 96.0 0.07 2.4E-06 47.8 11.6 65 85-150 49-115 (152)
203 3mv2_B Coatomer subunit epsilo 95.6 0.12 4.1E-06 51.4 12.8 155 44-227 85-261 (310)
204 3u64_A Protein TP_0956; tetrat 95.5 0.34 1.2E-05 48.0 15.6 125 48-174 141-273 (301)
205 3qww_A SET and MYND domain-con 95.4 0.11 3.9E-06 53.6 12.4 102 22-137 296-413 (433)
206 1klx_A Cysteine rich protein B 95.3 0.38 1.3E-05 40.7 13.5 117 83-217 7-127 (138)
207 4b4t_Q 26S proteasome regulato 95.0 0.23 7.8E-06 48.5 12.7 168 35-216 66-245 (434)
208 3n71_A Histone lysine methyltr 94.9 0.18 6.1E-06 52.9 12.3 104 20-137 305-424 (490)
209 3u64_A Protein TP_0956; tetrat 94.6 0.17 5.7E-06 50.2 10.2 91 42-139 180-273 (301)
210 1b89_A Protein (clathrin heavy 94.4 0.051 1.7E-06 56.8 6.5 73 150-233 217-294 (449)
211 1klx_A Cysteine rich protein B 94.0 1.4 4.7E-05 37.1 13.7 109 42-171 12-127 (138)
212 2v5f_A Prolyl 4-hydroxylase su 93.1 0.57 1.9E-05 37.7 9.4 70 33-115 14-90 (104)
213 3qwp_A SET and MYND domain-con 92.7 0.45 1.5E-05 48.8 10.1 99 24-136 287-401 (429)
214 2uy1_A Cleavage stimulation fa 92.3 6.1 0.00021 40.8 18.2 182 21-230 11-255 (493)
215 1b89_A Protein (clathrin heavy 91.6 0.29 9.9E-06 51.1 7.1 32 202-233 222-253 (449)
216 2v5f_A Prolyl 4-hydroxylase su 91.5 1.8 6.1E-05 34.6 10.5 63 86-149 20-89 (104)
217 2uy1_A Cleavage stimulation fa 89.1 15 0.00053 37.8 17.6 124 42-179 196-358 (493)
218 1nzn_A CGI-135 protein, fissio 86.6 6.1 0.00021 34.1 10.6 63 86-149 53-117 (126)
219 3qww_A SET and MYND domain-con 85.0 1.7 5.7E-05 44.8 7.4 83 120-215 312-410 (433)
220 3o48_A Mitochondria fission 1 84.5 14 0.00049 32.2 12.0 63 86-149 58-121 (134)
221 1nzn_A CGI-135 protein, fissio 83.5 6.4 0.00022 33.9 9.3 96 92-188 22-121 (126)
222 1y8m_A FIS1; mitochondria, unk 80.3 30 0.001 30.5 13.8 63 85-148 56-119 (144)
223 3n71_A Histone lysine methyltr 74.6 5.8 0.0002 41.3 7.5 83 120-215 323-421 (490)
224 1y8m_A FIS1; mitochondria, unk 74.5 41 0.0014 29.6 11.8 101 88-189 19-125 (144)
225 3o48_A Mitochondria fission 1 72.3 10 0.00035 33.2 7.2 98 88-187 20-124 (134)
226 3qwp_A SET and MYND domain-con 67.1 7.8 0.00027 39.5 6.3 83 120-215 301-399 (429)
227 4gns_B Protein CSD3, chitin bi 39.5 1.7E+02 0.006 32.1 11.5 118 38-162 262-392 (754)
228 4hu2_A Probable conserved lipo 33.9 58 0.002 30.1 5.6 81 278-372 115-197 (198)
229 2ff4_A Probable regulatory pro 25.8 3.6E+02 0.012 26.5 10.4 55 31-98 178-232 (388)
230 3ffl_A Anaphase-promoting comp 23.3 1.2E+02 0.0041 27.2 5.6 61 26-99 22-91 (167)
231 1ya0_A SMG-7 transcript varian 20.2 3.2E+02 0.011 28.3 9.0 65 158-234 169-233 (497)
232 2cfu_A SDSA1; SDS-hydrolase, l 20.1 1.9E+02 0.0065 31.0 7.4 47 27-74 452-498 (658)
No 1
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=7.1e-55 Score=468.03 Aligned_cols=319 Identities=33% Similarity=0.572 Sum_probs=267.6
Q ss_pred CCCCcCC-CCChHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC
Q 013048 1 MHGRPRK-PLKPEDAAAS---AAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (450)
Q Consensus 1 mhgr~~~-~~~~e~~~~~---~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~ 76 (450)
||||+|+ ++++++++|+ .+|.+.|+.++++|++.+..|+|+++||++++++|.+||++|+||++||.++..++.
T Consensus 1 mhg~~~~~~~~~~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~-- 78 (567)
T 1dce_A 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLET-- 78 (567)
T ss_dssp CCSCBCSSCSTTSSCCSCCCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--
T ss_pred CCCCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccc--
Confidence 9999998 5555554444 568888999999999999999999999999999999999999999999999999974
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 77 ~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
..+++.....+++||++++++|+.|||+|+||+||+|++.+++ ..+++|+++|++++++||+|||||+||+|++..++.
T Consensus 79 ~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~ 158 (567)
T 1dce_A 79 EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 158 (567)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC
Confidence 2234455667999999999999999999999999999999984 256999999999999999999999999999999995
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc--cchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF--VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 156 ~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~--~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
..++|++|++++|+.||+|+|||+||+.++..+......+. ....+.+++|++++++||+++|+|+|+|+|++|++.+
T Consensus 159 ~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 55699999999999999999999999999999865432211 1234678999999999999999999999999999999
Q ss_pred cccCCCCcccccCCCCCCcceecCCccccCCCCCCcccccCCCCccceEEeeccccccccc-cceEEecccCcCccceee
Q 013048 234 TVRVDSPQLVSSWPTPGSDLILLGDRCLDGCASSPFTRFHLDSRTFPLVLYFNQAVEGVNS-STITVDSELNTNKDLVWK 312 (450)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~v~~~~~-~~~~~~~~~~~~~~~~w~ 312 (450)
..+.+ .+.| + |++ ....++|++|++||..-.. +|+.+.+... ...++|+
T Consensus 239 ~~~~~---~~~~---------------~----------~~~-~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~-~~~~~W~ 288 (567)
T 1dce_A 239 AEPHD---VLCC---------------V----------HVS-REEACLSVCFSRPLTVGSRMGTLLLMVDEA-PLSVEWR 288 (567)
T ss_dssp CCCCS---CEEE---------------E----------EEE-TTTTEEEEEEEEEECTTBTTBCEEEEESSS-EECCCCB
T ss_pred CCCcc---ceee---------------e----------eec-cCCceEEEEeccceeccccccceEEeecCc-ccceeec
Confidence 75422 2211 1 122 3577799999999985433 2488888754 5799999
Q ss_pred eCCCCCCccceeEEEeccCCCCCCCCCccccEEEecCcccc
Q 013048 313 PLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQG 353 (450)
Q Consensus 313 ~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (450)
|+. .++++++||+++++.++...+ ..+|+|+|.+++.++
T Consensus 289 ~~~-~~~~~~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 327 (567)
T 1dce_A 289 TPD-GRNRPSHVWLCDLPAASLNDQ-LPQHTFRVIWTGSDS 327 (567)
T ss_dssp CTT-SSCCSEEEEEEECCGGGTSTT-SSEEEEEEEETTTTE
T ss_pred cCC-cccccceeEEeecCccccccc-cccceEEEeeccCCC
Confidence 998 678899999999998765444 568999999987664
No 2
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=1.1e-49 Score=403.06 Aligned_cols=234 Identities=40% Similarity=0.691 Sum_probs=194.5
Q ss_pred CCCCcCC-CCChHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCC
Q 013048 1 MHGRPRK-PLKPEDAAASA---AKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEN 76 (450)
Q Consensus 1 mhgr~~~-~~~~e~~~~~~---~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~ 76 (450)
||||+|+ +++++.+++++ +|.+.|+.+++.+++++++|+|+++||++++++|.+||++|||||+||.+|..++.
T Consensus 2 mhg~~r~~~~~~~~~~~~~~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~-- 79 (331)
T 3dss_A 2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLET-- 79 (331)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH--
T ss_pred CCCCcCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcc--
Confidence 9999999 44444444444 36777788889999999999999999999999999999999999999999999874
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 77 DSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 77 ~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~-~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
..+|+.....+.+||.+++.+|..|||||++|+||+|++.+++. .+++||++|++++++||+|||||+||+|++..++.
T Consensus 80 ~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 80 EKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence 22344445669999999999999999999999999999999863 48999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhcc--CccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE--GFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 156 ~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~--g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
+.++||++++++|+.||+|+|||+||++++..+...... ......+++++||+++++||+++|+|+|+|+|++|++..
T Consensus 160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 756899999999999999999999999999998642211 011234679999999999999999999999999999998
Q ss_pred ccc
Q 013048 234 TVR 236 (450)
Q Consensus 234 ~~~ 236 (450)
..+
T Consensus 240 ~~~ 242 (331)
T 3dss_A 240 GSG 242 (331)
T ss_dssp SSC
T ss_pred ccC
Confidence 644
No 3
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=1.5e-47 Score=389.89 Aligned_cols=230 Identities=24% Similarity=0.364 Sum_probs=210.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHH
Q 013048 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (450)
Q Consensus 10 ~~e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~e 89 (450)
.++.++++|+|.++|+.+++++++.+.+++++++||++++++|.+||++||+||+||.+|..++. .+++
T Consensus 39 ~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-----------~l~e 107 (349)
T 3q7a_A 39 DGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-----------SLED 107 (349)
T ss_dssp CCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------CHHH
T ss_pred CCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-----------hHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999863 4899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcCh-------HHHH
Q 013048 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHS-SIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-------EDEL 161 (450)
Q Consensus 90 EL~~~e~aL~~nPKny~AW~hR~wvL~kl~~-~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~-------eeEL 161 (450)
||.+++.+|..|||+|++|+||+|++.++.+ .+++||++|+++|++||||||||+||+|++..++.+. ++||
T Consensus 108 EL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 108 ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 9999999999999999999999999998733 7899999999999999999999999999999999876 4899
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccccCCCCc
Q 013048 162 KYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVDSPQ 241 (450)
Q Consensus 162 e~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~~~~~~ 241 (450)
++++++|+.||+|+|||+||++++.+++.. .....++++||++++++|+++|+|+|+|+|++||+.+..+...|+
T Consensus 188 e~~~k~I~~dp~N~SAW~~R~~lL~~l~~~-----~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 188 DWCNEMLRVDGRNNSAWGWRWYLRVSRPGA-----ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHTTSTTC-----CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 999999999999999999999999998742 123467899999999999999999999999999999998888899
Q ss_pred ccccCCCCCCccee
Q 013048 242 LVSSWPTPGSDLIL 255 (450)
Q Consensus 242 ~~~~~~~~~~~~~l 255 (450)
+.++||++|+.|.+
T Consensus 263 ~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 263 LPAILPYTASKLNP 276 (349)
T ss_dssp HHHHGGGTC-----
T ss_pred cccccccccccccc
Confidence 99999999999865
No 4
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.1e-44 Score=360.42 Aligned_cols=211 Identities=23% Similarity=0.407 Sum_probs=194.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHH
Q 013048 10 KPEDAAASAAKAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDE 89 (450)
Q Consensus 10 ~~e~~~~~~~~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~e 89 (450)
.++.++.+|+|.++|+.++++|++.+++|+|+++||++|+++|.+||++|||||+||.+|..++. ..+++
T Consensus 18 ~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~----------~~~~e 87 (306)
T 3dra_A 18 TEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN----------RNLYD 87 (306)
T ss_dssp CSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT----------SCHHH
T ss_pred CCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc----------ccHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999871 15899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH----HhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcCh-HHHHH
Q 013048 90 ELRVVESALRQNFKSYGAWHHRKWIL----SKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELK 162 (450)
Q Consensus 90 EL~~~e~aL~~nPKny~AW~hR~wvL----~kl~--~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~-eeELe 162 (450)
||.+++.+|..|||+|++|+||+|++ ..++ ..+++||++|++++++||||||||+||+|++..++.+. ++||+
T Consensus 88 eL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 88 ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 99999999999999999999999999 6652 47899999999999999999999999999999999874 47999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
+++++|+.||+|+|||+||++++.+++.. ...+++++||++++++|+++|+|+|+|+|+++++....+
T Consensus 168 ~~~~~i~~d~~N~sAW~~R~~ll~~l~~~------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 168 FVDKVIDTDLKNNSAWSHRFFLLFSKKHL------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHSSGGG------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcccc------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999998642 124568999999999999999999999999999988654
No 5
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.97 E-value=3e-31 Score=265.16 Aligned_cols=188 Identities=22% Similarity=0.332 Sum_probs=158.2
Q ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC
Q 013048 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG 118 (450)
Q Consensus 39 eyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl 118 (450)
.+ +++|++++++|.+||++|++|++|+++|.++......+ ..+++||.+++++|..+||||+||+||+|++.++
T Consensus 84 ~~-~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~-----~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l 157 (306)
T 3dra_A 84 NL-YDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND-----FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF 157 (306)
T ss_dssp CH-HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC-----CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cH-HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 56 89999999999999999999999999995543110000 2479999999999999999999999999999998
Q ss_pred CCChH--HHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC-----hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 119 HSSID--NELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-----EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 119 ~~~~~--eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~-----~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
+ .++ +||++|+++++.||+|||||+||++++..++.. .++||++++++|..+|+|+|||+||++++..+++.
T Consensus 158 ~-~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 158 D-LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp T-CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred c-ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence 5 777 999999999999999999999999999999861 35899999999999999999999999999998763
Q ss_pred hc------cC---cc---c--------------hhchHHHHHHHHHHHHH-hCCCCcchHHHHHHHHcc
Q 013048 192 KV------EG---FV---S--------------KEKVLPDEYEFVHQAIF-TDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 192 ~~------~g---~~---~--------------~~~ileeELe~v~~AI~-~dP~deSaW~Y~r~LL~~ 233 (450)
.. .. .. + ..+.+++++++++.++. .||-+...|.|++..|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~~ 305 (306)
T 3dra_A 237 ITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLTS 305 (306)
T ss_dssp GGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC-
T ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhccc
Confidence 11 00 00 0 12345789999999997 799999999999887653
No 6
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.97 E-value=1.3e-29 Score=256.34 Aligned_cols=176 Identities=20% Similarity=0.367 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
+++|.+++.+|..||++|++|+||++++..++. ..+++||.+++++|..+|+||+||+||+|++..++..
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~----------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~ 160 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE----------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 160 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS----------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc----------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence 689999999999999999999999999999863 1489999999999999999999999999999998633
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcC--------------cChHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMN--------------RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~--------------~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~ 187 (450)
+++|+++++++++.||+|++||+||++++..+. .+ ++||++++++|..+|.|.|||+|+++++..
T Consensus 161 ~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~-~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 161 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL-LKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 699999999999999999999999999999983 23 489999999999999999999999999887
Q ss_pred hhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 188 LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 188 L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
.......+ ....+++++||+++++++..+|++ .|.++..++
T Consensus 240 ~~~~~~~~-~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~ 280 (331)
T 3dss_A 240 GSGRCELS-VEKSTVLQSELESCKELQELEPEN--KWCLLTIIL 280 (331)
T ss_dssp SSCGGGCC-HHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred ccCccccc-hHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence 63211111 234578999999999999999976 899877755
No 7
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.95 E-value=1.2e-27 Score=243.54 Aligned_cols=168 Identities=19% Similarity=0.355 Sum_probs=151.6
Q ss_pred HHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 52 LETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDK 131 (450)
Q Consensus 52 L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k 131 (450)
|.+.|++..+|++++.++..... .+++|++++++|..||++|++|++|+++|..++..+++||+++++
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~------------se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~ 114 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEK------------SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNE 114 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCC------------SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46788999999999999988753 368999999999999999999999999999986469999999999
Q ss_pred HHHhCCCChhhhhHHHHHHHHc-C-cChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHH
Q 013048 132 FQKADSRNFHAWNYRRFVAASM-N-RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF 209 (450)
Q Consensus 132 ~L~~dpkNyhAW~yR~~vl~~L-~-~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~ 209 (450)
+|..+|+||++|+||+|++..+ + .+. +||++++++|+.||+||+||+||++++.+++.... ...+++.+||++
T Consensus 115 ~L~~nPKny~aW~hR~wlL~~l~~~~~~-~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~----~~~~~~~eELe~ 189 (349)
T 3q7a_A 115 FAVQNLKSYQVWHHRLLLLDRISPQDPV-SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR----ISEAQWGSELDW 189 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCCSCCH-HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc----cchhhHHHHHHH
Confidence 9999999999999999999999 7 664 89999999999999999999999999999986421 123567899999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 210 VHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 210 v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++++|..+|.|.|||+|+++++..+.+
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999988654
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=1.9e-25 Score=228.58 Aligned_cols=195 Identities=24% Similarity=0.485 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH
Q 013048 21 AEKLRVLQSQFLHNHH-NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99 (450)
Q Consensus 21 ~~k~~~l~~~~~~~~~-~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~ 99 (450)
...+..++..+...+. .|.+ ++|+.++.++|.++|+++++|++|+.++..+++ .+++++.+++++|.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~-~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~-----------d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-----------DLHEEMNYITAIIE 160 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc-----------CHHHHHHHHHHHHH
Confidence 3445555554444444 5666 899999999999999999999999999999862 38999999999999
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHH
Q 013048 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (450)
Q Consensus 100 ~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~ 179 (450)
.+|+++.+|+||++++..++ .+++++.+|+++|+++|+|+++|.+|++++..+|.++ +++++++++|+.+|+|.++|+
T Consensus 161 l~P~~~~a~~~~g~~~~~~g-~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~-eAl~~~~~al~l~P~~~~a~~ 238 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD-NELQYVDQLLKEDVRNNSVWN 238 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT-THHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999985 8999999999999999999999999999999999997 799999999999999999999
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 180 yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
+|+.++..+... ..+.++++|++++++||.++|++.++|+|+++++....
T Consensus 239 ~lg~~l~~l~~~------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 239 QRYFVISNTTGY------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHHHHTTCS------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCc------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 999999985431 12334678899999999999999999999999998743
No 9
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.91 E-value=2.4e-24 Score=231.08 Aligned_cols=136 Identities=18% Similarity=0.371 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC-h
Q 013048 88 DEELRVVESALRQNFKSYGAWHHRKWILSKGHSS---------IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS-E 157 (450)
Q Consensus 88 ~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~---------~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~-~ 157 (450)
+++|++++++|..||++|+||+||++++..++.. +++|+++++++++.+||||+||+||+|++..++.+ .
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 5779999999999999999999999999988522 89999999999999999999999999999999954 2
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 158 EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 158 eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
++||++|+++|+.||+|++||+||++++..++. .+++|+++++++|..+|+|.|||+|+++++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-----------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAV-----------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-----------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-----------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 489999999999999999999999999999862 279999999999999999999999999999775
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.84 E-value=1e-20 Score=193.46 Aligned_cols=162 Identities=18% Similarity=0.448 Sum_probs=151.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 50 KLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLL 129 (450)
Q Consensus 50 ~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~ 129 (450)
.+|.++|++..+|++++.++...++ +++++.+++++|..+|+++.+|++|+.++..++..+++++.++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~------------~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~ 155 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDER------------SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 155 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCC------------hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 4678999999999999999988863 7999999999999999999999999999999852399999999
Q ss_pred HHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHH
Q 013048 130 DKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF 209 (450)
Q Consensus 130 ~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~ 209 (450)
+++++++|+|+.+|++|++++..++.+. +++++++++|+.+|+|+.+|++|++++..++. +++++++
T Consensus 156 ~~al~l~P~~~~a~~~~g~~~~~~g~~~-eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~------------~~eAl~~ 222 (382)
T 2h6f_A 156 TAIIEEQPKNYQVWHHRRVLVEWLRDPS-QELEFIADILNQDAKNYHAWQHRQWVIQEFKL------------WDNELQY 222 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCT-THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------CTTHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC------------hHHHHHH
Confidence 9999999999999999999999999997 89999999999999999999999999999875 6899999
Q ss_pred HHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 210 VHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 210 v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++++|.++|++.++|++++.++....+
T Consensus 223 ~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 223 VDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999877433
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=8.5e-16 Score=142.26 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=162.9
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|.+ ++|+..+.++|.++|++..+|..++.++..++ .+++++..+++++..+|++..+|..
T Consensus 12 g~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 12 GVQLYALGRY-DAALTLFERALKENPQDPEALYWLARTQLKLG------------LVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3345578899 89999999999999999999999999999987 3899999999999999999999999
Q ss_pred HHHHHHhC-----------CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHH
Q 013048 111 RKWILSKG-----------HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (450)
Q Consensus 111 R~wvL~kl-----------~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~ 179 (450)
++.++... + .+++++..++++++++|.+..+|..++.++..+|.++ +++++++++++.+ .+..+|.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKG-YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD-KAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHhhhhhhhhccccc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhcc-cchHHHH
Confidence 99999877 5 7899999999999999999999999999999999996 8999999999999 9999999
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccccCC
Q 013048 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVRVD 238 (450)
Q Consensus 180 yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~~~ 238 (450)
.++.++..+++ ++++++.+.+++..+|++..++..+..++....+.+
T Consensus 156 ~la~~~~~~g~------------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 156 ALAELYLSMGR------------LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHHTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHcCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 99999998875 799999999999999999999988888887765433
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=5.7e-16 Score=137.14 Aligned_cols=161 Identities=10% Similarity=0.038 Sum_probs=151.4
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
.+..|+| ++|+..+.++|.++|++..+|..++.++..++ .+++++..+..++..+|++..+|...+.
T Consensus 15 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 15 KRTKGDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIG------------LPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567999 89999999999999999999999999999887 3899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~ 193 (450)
+..... .++.+++.+.+++.++|.+..+|..++.++..+|.++ +++++++++++.+|.+..+|++++.++..+++
T Consensus 82 ~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--- 156 (184)
T 3vtx_A 82 ANFMID-EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHD-KAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--- 156 (184)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCch-hHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---
Confidence 998884 8999999999999999999999999999999999996 89999999999999999999999999998875
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 194 ~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
++++++++++||.++|++.
T Consensus 157 ---------~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 ---------RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp ---------HHHHHHHHHHHHHTTHHHH
T ss_pred ---------HHHHHHHHHHHHhCCccCH
Confidence 7999999999999999763
No 13
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=7.3e-14 Score=127.92 Aligned_cols=186 Identities=10% Similarity=-0.022 Sum_probs=160.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNP-ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NP-d~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~ 109 (450)
-......|.| ++|+..+.++|.++| .+..+|..++.++..++ .+++++..+++++..+|++..+|.
T Consensus 14 g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 14 GNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK------------KYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh------------cHHHHHHHHHHHHHhCcchHHHHH
Confidence 3445578999 899999999999999 99999999999999887 489999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCh-------hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC--ChhHHHH
Q 013048 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNF-------HAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--NYSAWHN 180 (450)
Q Consensus 110 hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy-------hAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps--NySAW~y 180 (450)
.++.++..++ .+++++..++++++++|.|. .+|..++.+...++.++ +++++++++++.+|. +..+|..
T Consensus 81 ~l~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 81 GKSAAYRDMK-NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE-KAEENYKHATDVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH-HHHHHHHHHHhcCCCcccHHHHHH
Confidence 9999999985 99999999999999999999 67999999999999986 899999999999999 8899999
Q ss_pred HHHHHHHhhhhh--c-cCc------------cchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 181 RSLLLSNLLKRK--V-EGF------------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 181 R~~LL~~L~~~~--~-~g~------------~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
++.++..++... . ... ....+.++++++++.+++.++|++..+...+..+.
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999988776530 0 000 01233469999999999999999998876655443
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=3.9e-14 Score=156.18 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=143.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
....+|++ ++|++.+.++|.++|++..+|+.++.++..+++ +++++..++++|+.+|++..+|+.++
T Consensus 18 ~~~~~G~~-~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~------------~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 18 IKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK------------LQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44568999 899999999999999999999999999999974 89999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
.++..++ .+++++++++++++++|.+..+|.+.+.++..+|.++ +++++++++++++|.+..+|.+++.++..+++
T Consensus 85 ~~l~~~g-~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~-eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~-- 160 (723)
T 4gyw_A 85 NTLKEMQ-DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP-EAIASYRTALKLKPDFPDAYCNLAHCLQIVCD-- 160 (723)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHhhhhhHHHhccc--
Confidence 9999985 9999999999999999999999999999999999996 89999999999999999999999999998876
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCC
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
++++++.+.+++.+.|
T Consensus 161 ----------~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 ----------WTDYDERMKKLVSIVA 176 (723)
T ss_dssp ----------CTTHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhCh
Confidence 3445555555554443
No 15
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.56 E-value=2.7e-14 Score=155.26 Aligned_cols=174 Identities=8% Similarity=-0.135 Sum_probs=160.4
Q ss_pred HHHhhcCCCcHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC
Q 013048 32 LHNHHNHIYSKEAVELSTKLL--------ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L--------~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK 103 (450)
......|++ ++|++.+++++ ..+|++..+|..++.++..++ .+++++..+++++..+|+
T Consensus 399 ~~a~~~~~~-~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 399 LQATVLSQP-VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG------------DVAKATRKLDDLAERVGW 465 (681)
T ss_dssp HHHTTTCCH-HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHCC
T ss_pred hhcccccCH-HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC------------CHHHHHHHHHHHhccCcc
Confidence 333678888 89999999999 999999999999999999987 489999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHH
Q 013048 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSL 183 (450)
Q Consensus 104 ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~ 183 (450)
+..+|++++.++...+ .++++++.|+++++++|.+..+|.+++.++..+|.++ + +++++++++.+|.+..+|++++.
T Consensus 466 ~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~-~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTD-E-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCC-T-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH-H-HHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999884 9999999999999999999999999999999999997 6 99999999999999999999999
Q ss_pred HHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 184 LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
++..+++ ++++++.+++|+.++|++..+|..+..++..
T Consensus 543 ~~~~~g~------------~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 543 ARSAEGD------------RVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTTC------------HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHcCC------------HHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9998875 7999999999999999999999777776644
No 16
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=2.1e-13 Score=141.63 Aligned_cols=175 Identities=19% Similarity=0.078 Sum_probs=160.1
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
....|+|+++|+..+.++|.++|++..+|+..+.++...+ .+++++.++++++..+|+ ..+|...+.
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG------------DVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 3456888789999999999999999999999999999987 489999999999999999 799999999
Q ss_pred HHHhC---------CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc--------CcChHHHHHHHHHHHHhcc---C
Q 013048 114 ILSKG---------HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM--------NRSEEDELKYTEDMICNNF---S 173 (450)
Q Consensus 114 vL~kl---------~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L--------~~~~eeELe~~dk~I~~np---s 173 (450)
++..+ + .+++++++++++++++|.+..+|...+.++..+ +.+. +++++++++++.+| .
T Consensus 179 ~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSR-HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ-QALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH-HHHHHHHHHHHhCCCccc
Confidence 99876 4 789999999999999999999999999999988 7775 89999999999999 9
Q ss_pred ChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 174 NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 174 NySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
+..+|.+++.++..+++ ++++++++.+++.++|++..+|..+..++....
T Consensus 257 ~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 257 NPDLHLNRATLHKYEES------------YGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp CHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998875 799999999999999999999988877765443
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.1e-13 Score=127.24 Aligned_cols=175 Identities=10% Similarity=-0.015 Sum_probs=141.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHhhhcCCCCCcchhhhhHHH
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNY----------------RKLAVQHKLTENDSDPDSLKSILDE 89 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~----------------Rr~iL~~l~~~~~~dpe~~~~~~~e 89 (450)
.+...-......|.| ++|+..+.++|.++|++..+|.+ ++.++..++ .+++
T Consensus 6 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g------------~~~~ 72 (208)
T 3urz_A 6 EMLQKVSAAIEAGQN-GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR------------NYDK 72 (208)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT------------CHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC------------CHHH
Confidence 344455566788999 89999999999999999999999 999988886 4899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcCh-HHHHHHHHHHH
Q 013048 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSE-EDELKYTEDMI 168 (450)
Q Consensus 90 EL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~-eeELe~~dk~I 168 (450)
++.+++++|..+|++..+|..++.++...+ .+++++.+++++++++|.|..+|...+.++...+... ......+.+.+
T Consensus 73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 73 AYLFYKELLQKAPNNVDCLEACAEMQVCRG-QEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999884 9999999999999999999999999999886665432 23445566665
Q ss_pred HhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHH
Q 013048 169 CNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHL 228 (450)
Q Consensus 169 ~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r 228 (450)
..+|. ..+|++++.....+++ ++++++++++|+.++|+.+ +..++.
T Consensus 152 ~~~~~-~~a~~~~g~~~~~~~~------------~~~A~~~~~~al~l~P~~~-~~~~l~ 197 (208)
T 3urz_A 152 SPTKM-QYARYRDGLSKLFTTR------------YEKARNSLQKVILRFPSTE-AQKTLD 197 (208)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHT------------HHHHHHHHHHHTTTSCCHH-HHHHHH
T ss_pred CCCch-hHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 44443 3478888887776654 7999999999999999754 443433
No 18
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=1.4e-13 Score=151.66 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=145.5
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
-+|++..+++..+.++..+++ +++++.+++++|+.+|++..+|+.++.++.+++ .++++++.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~------------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g-~~~eA~~~~~~Al 70 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAI 70 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 579999999999999999974 899999999999999999999999999999985 9999999999999
Q ss_pred HhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHH
Q 013048 134 KADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQA 213 (450)
Q Consensus 134 ~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~A 213 (450)
+++|.+..+|.+++.++..++.++ +++++++++|+.+|.+..+|++++.++..+++ ++++++++++|
T Consensus 71 ~l~P~~~~a~~nLg~~l~~~g~~~-~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~------------~~eAi~~~~~A 137 (723)
T 4gyw_A 71 RISPTFADAYSNMGNTLKEMQDVQ-GALQCYTRAIQINPAFADAHSNLASIHKDSGN------------IPEAIASYRTA 137 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHH
Confidence 999999999999999999999996 89999999999999999999999999998875 79999999999
Q ss_pred HHhCCCCcchHHHHHHHHcccc
Q 013048 214 IFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 214 I~~dP~deSaW~Y~r~LL~~~~ 235 (450)
+.++|++..+|..+..++....
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCChHHHhhhhhHHHhcc
Confidence 9999999999988887775443
No 19
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=9.2e-13 Score=129.61 Aligned_cols=103 Identities=11% Similarity=-0.016 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHH
Q 013048 86 ILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTE 165 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~d 165 (450)
.+++++.++++++..+|.+..+|...+.++...+ .+++++..++++++++|.+..+|...+.++...+.++ ++++.+.
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD-RAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHH
Confidence 4667777777777777777777777777766653 6677777777777777777777777777777776665 5666777
Q ss_pred HHHHhccCChhHHHHHHHHHHHhhh
Q 013048 166 DMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 166 k~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
+++..+|.+..+|...+.++...++
T Consensus 228 ~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 228 RALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 7777777777777666666665543
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.9e-13 Score=127.02 Aligned_cols=183 Identities=11% Similarity=-0.059 Sum_probs=164.0
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
+..........|.| ++|+.++.+++..+|.+..++.....++..++ .+++++.++++++..+|++..
T Consensus 25 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 25 VVSLAERHYYNCDF-KMCYKLTSVVMEKDPFHASCLPVHIGTLVELN------------KANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh------------hHHHHHHHHHHHHHhCcCCHH
Confidence 33444455567999 89999999999999999999999999988876 489999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
+|...+.++...+..+++++.+++++++.+|.+..+|...+.++...+.+. ++++++.+++..+|.+..+|.+.+.++.
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD-QAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999888438999999999999999999999999999999999986 8999999999999999999999999888
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 187 ~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
.++. ++++++++.+++..+|++..+|+.+..++....
T Consensus 171 ~~~~------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 171 LTNN------------SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HTTC------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHhh------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 7764 799999999999999999999988877776543
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=8.9e-13 Score=116.44 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=142.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
++..++|+..+.+....+ .+++++.+++++|+.+|++..+|..++.++.+.+ .+++++..+.+++..
T Consensus 2 ge~~~iy~~lG~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKG------------DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFVVL 68 (184)
T ss_dssp --CHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 467889999999999887 4899999999999999999999999999999985 899999999999999
Q ss_pred CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 136 dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
+|.+..+|...+.+....+.+. .+++.+.+++..+|.+..+|..++.++..+++ ++++++++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQ-AAIDALQRAIALNTVYADAYYKLGLVYDSMGE------------HDKAIEAYEKTIS 135 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCccchHHHHHHHHHHHHhCC------------chhHHHHHHHHHH
Confidence 9999999999999999998885 79999999999999999999999999998875 7999999999999
Q ss_pred hCCCCcchHHHHHHHHccccc
Q 013048 216 TDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 216 ~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++|++..+|+.+..++....+
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC
T ss_pred hcchhhhHHHHHHHHHHHCCC
Confidence 999999999988888876544
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.52 E-value=8e-13 Score=128.69 Aligned_cols=178 Identities=8% Similarity=0.013 Sum_probs=129.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.....|.| ++|+..+.++|..+|++..+|+..+.++..++. +++++..+++++..+|++..+|...+
T Consensus 74 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 74 KRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQAENEN------------EQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34455667 677777777777777777777777777776653 56666667777766676666666666
Q ss_pred HHHHhCC-------------------------------------------CChHHHHHHHHHHHHhCCC--ChhhhhHHH
Q 013048 113 WILSKGH-------------------------------------------SSIDNELRLLDKFQKADSR--NFHAWNYRR 147 (450)
Q Consensus 113 wvL~kl~-------------------------------------------~~~~eEL~~~~k~L~~dpk--NyhAW~yR~ 147 (450)
.++...+ +.+++++++++++++++|. +..+|...+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 6665542 1244555555555566666 667777777
Q ss_pred HHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHH
Q 013048 148 FVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (450)
Q Consensus 148 ~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~ 227 (450)
.++...+.+. +++++++++++.+|.+..+|...+.++..+++ ++++++.+.+++..+|++..+|+.+
T Consensus 221 ~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 221 VLFHLSGEFN-RAIDAFNAALTVRPEDYSLWNRLGATLANGDR------------SEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp HHHHHHTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCchHHHHHH
Confidence 7777777775 68888888888888888888888887777654 7999999999999999999999888
Q ss_pred HHHHccccc
Q 013048 228 LWLLDQTVR 236 (450)
Q Consensus 228 r~LL~~~~~ 236 (450)
..++.....
T Consensus 288 ~~~~~~~g~ 296 (365)
T 4eqf_A 288 GISCINLGA 296 (365)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777766543
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=1.3e-12 Score=128.52 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=141.5
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|.+ ++|+..+.+++..+|.+..+|+.++.++...+ .+++++.++++++..+|++..+|...+.++
T Consensus 45 ~~~~~-~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 45 QCRRL-DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG------------QLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp HTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 45666 67888888888888888888888888777776 378888888888888888888888888888
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g 195 (450)
...+ .++++++.+.++++.+|.+..+|...+.++..+|.+. ++++++.++++.+|.+..+|...+.++...+.
T Consensus 112 ~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----- 184 (388)
T 1w3b_A 112 VAAG-DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE-EAKACYLKAIETQPNFAVAWSNLGCVFNAQGE----- 184 (388)
T ss_dssp HHHS-CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-----
T ss_pred HHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----
Confidence 7774 7788888888888888888888888888888888875 78888888888888888888888887776654
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++++++.+++++..+|++..+|..+..++.....
T Consensus 185 -------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 185 -------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp -------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred -------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 6889999999999999999999887777766544
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.5e-12 Score=116.65 Aligned_cols=170 Identities=16% Similarity=0.077 Sum_probs=145.2
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
....|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++.++++++..+|++..+|...+.
T Consensus 67 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 133 (243)
T 2q7f_A 67 LSSVNEL-ERALAFYDKALELDSSAATAYYGAGNVYVVKE------------MYKEAKDMFEKALRAGMENGDLFYMLGT 133 (243)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456777 78888888888888888888888888887775 4789999999999999999999999988
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~ 193 (450)
++...+ .+++++.+++++++.+|.+..+|...+.++...+.+. ++++++++++..+|.+..+|..++.++..++.
T Consensus 134 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--- 208 (243)
T 2q7f_A 134 VLVKLE-QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD-EALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--- 208 (243)
T ss_dssp HHHHTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---
Confidence 888874 8899999999999999999999999999988888886 78999999999999999999888888887764
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 013048 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (450)
Q Consensus 194 ~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~L 230 (450)
++++++++.+++.++|++..+|..+..+
T Consensus 209 ---------~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 209 ---------REKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp ---------TTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred ---------HHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6889999999999999999998654433
No 25
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=1.2e-12 Score=118.76 Aligned_cols=177 Identities=15% Similarity=0.074 Sum_probs=154.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.....|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++.++++++..+|++..+|...+
T Consensus 32 ~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 32 RGSEFGDY-EKAAEAFTKAIEENKEDAIPYINFANLLSSVN------------ELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp -----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhhCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34567888 89999999999999999999999999998886 489999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
.++...+ .+++++++++++++.+|.+..+|...+.+....+.+. ++++++++++..+|.+..+|...+.++..++.
T Consensus 99 ~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 174 (243)
T 2q7f_A 99 NVYVVKE-MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK-LALPYLQRAVELNENDTEARFQFGMCLANEGM-- 174 (243)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--
Confidence 9999884 8999999999999999999999999999999999986 89999999999999999999999999888765
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++++++.+.+++..+|++..+|..+..++.....
T Consensus 175 ----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 208 (243)
T 2q7f_A 175 ----------LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208 (243)
T ss_dssp ----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC
Confidence 6899999999999999999999888877766544
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=6.8e-12 Score=111.82 Aligned_cols=174 Identities=13% Similarity=0.054 Sum_probs=153.0
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
.......|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++..+++++..+|.+..+|..
T Consensus 15 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 15 AMEYMRGQDY-RQATASIEDALKSDPKNELAWLVRAEIYQYLK------------VNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcC------------ChHHHHHHHHHHHHhCCCChHHHHH
Confidence 3344567888 89999999999999999999999999988876 4899999999999999999999999
Q ss_pred HHHHHHhC-CCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 013048 111 RKWILSKG-HSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (450)
Q Consensus 111 R~wvL~kl-~~~~~eEL~~~~k~L~--~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~ 187 (450)
.+.++... + .+++++.+++++++ .+|.+..+|...+.++...+.+. +++++++++++.+|.+..+|...+.++..
T Consensus 82 l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 82 YGWFLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG-LAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999887 6 89999999999999 77777899999999999999886 79999999999999999999999999887
Q ss_pred hhhhhccCccchhchHHHHHHHHHHHHHhCC-CCcchHHHHHHHH
Q 013048 188 LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP-DDQSGWFYHLWLL 231 (450)
Q Consensus 188 L~~~~~~g~~~~~~ileeELe~v~~AI~~dP-~deSaW~Y~r~LL 231 (450)
++. ++++++.+.+++..+| ++..+|.....++
T Consensus 160 ~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 160 AGQ------------LGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HTC------------HHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred cCC------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 765 7899999999999999 8888875444443
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3.1e-12 Score=117.49 Aligned_cols=182 Identities=12% Similarity=0.010 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 25 ~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
..+...-......|++ ++|+..+.+++..+|++..+|...+.++...+ .+++++..+++++..+|.+
T Consensus 38 ~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEM------------EPKLADEEYRKALASDSRN 104 (252)
T ss_dssp HHHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCc
Confidence 3444444455678999 79999999999999999999999999998886 4899999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQK--ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~--~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~ 182 (450)
..+|...+.++...+ .+++++++++++++ .+|.+..+|...+.++...+.++ ++++++.++++.+|.+..+|...+
T Consensus 105 ~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQK-RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA-QAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCcccHHHHHHHH
Confidence 999999999998884 89999999999999 88999999999999999999886 899999999999999999999999
Q ss_pred HHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 183 LLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 183 ~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
.++..+++ ++++++++.+++..+|++..+|..+..++..
T Consensus 183 ~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 183 DLLYKERE------------YVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHTTC------------HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 88887764 6888999999999999888888766666544
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.48 E-value=3e-12 Score=120.84 Aligned_cols=184 Identities=11% Similarity=0.006 Sum_probs=123.7
Q ss_pred hhcC-CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch------------hhhhHHHHH
Q 013048 35 HHNH-IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS------------LKSILDEEL 91 (450)
Q Consensus 35 ~~~g-eyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~------------~~~~~~eEL 91 (450)
...| .+ ++|+..+.+++.++|++..+|...+.++...+..+.+ .|+. ....+++++
T Consensus 101 ~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKN-EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCH-HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 3444 44 5666666666666666666666666665555421100 0100 013467777
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC---------CCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD---------SRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d---------pkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
..+++++..+|++..+|...+.++...+ .+++++.+++++++.. |.+..+|...+.++..++.+. ++++
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~ 257 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNG-EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA-EALD 257 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH-HHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH-HHHH
Confidence 7777777777777777777777777663 6777777777777765 555667777777777777764 6777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
+++++++.+|.+..+|...+.++..+++ ++++++++.+++.++|++..+|..+...+..
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGN------------FENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTC------------HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhcc------------HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 7777777777777777777777776654 6888888888888899888888877777744
No 29
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.48 E-value=3.2e-13 Score=115.57 Aligned_cols=123 Identities=18% Similarity=0.102 Sum_probs=111.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHH
Q 013048 49 TKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRL 128 (450)
Q Consensus 49 ~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~ 128 (450)
.++..+||+...+|+.+|..+...+ .+++++.+++++|..+|++..+|..++.++.+++ .+++++..
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~ 69 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKG------------DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM-EFQRALDD 69 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-cHHHHHHH
Confidence 4566799999999999999999887 4899999999999999999999999999999995 99999999
Q ss_pred HHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 013048 129 LDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (450)
Q Consensus 129 ~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL 185 (450)
++++++++|.+..+|.+++.++..++.+. +++++++++++++|+|..++...+.+|
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~~~~~~-~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVAMREWS-KAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999996 899999999999999999987666553
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=1.3e-12 Score=120.82 Aligned_cols=154 Identities=14% Similarity=-0.045 Sum_probs=140.4
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
|.+..+|..++.++...+ .+++++..+++++..+|++..+|..++.++...+ .+++++..+++++++
T Consensus 2 p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALG------------RYDAALTLFERALKENPQDPEALYWLARTQLKLG-LVNPALENGKTLVAR 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 788899999999998887 4899999999999999999999999999999984 999999999999999
Q ss_pred CCCChhhhhHHHHHHHHc-----------CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHH
Q 013048 136 DSRNFHAWNYRRFVAASM-----------NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLP 204 (450)
Q Consensus 136 dpkNyhAW~yR~~vl~~L-----------~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ile 204 (450)
+|.+..+|...+.++... |.+. ++++.++++++.+|.+..+|..++.++..+++ ++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~------------~~ 135 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE-QALSVLKDAERVNPRYAPLHLQRGLVYALLGE------------RD 135 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH-HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC------------hH
Confidence 999999999999999999 8886 89999999999999999999999999998875 79
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 205 DEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 205 eELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
++++.+.+++.++ ++..+|+.+..++....+
T Consensus 136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 136 KAEASLKQALALE-DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC
Confidence 9999999999999 999999887777755443
No 31
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.47 E-value=4.1e-12 Score=120.75 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=116.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|+| ++|+..+.+++..+|++..+|..++.++..++. +++++..+++++..+|.+..+|..
T Consensus 10 ~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 3ieg_A 10 GKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------------SKAALPDLTKVIALKMDFTAARLQ 76 (359)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCcchHHHH
Confidence 3344566777 677888888888888877777777777777753 667777777777777777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCC---CChhhhhHH------------HHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADS---RNFHAWNYR------------RFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dp---kNyhAW~yR------------~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
.+.++...+ .+++++..+.++++.+| .+..+|... +.++...+.+. +++++++++++.+|.+.
T Consensus 77 l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 77 RGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT-AAITFLDKILEVCVWDA 154 (359)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCch
Confidence 777666663 66777777777777777 666666555 34445555554 66777777777777777
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
.+|..++.++..++. ++++++.+.+++..+|++..+|..+..++.
T Consensus 155 ~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 155 ELRELRAECFIKEGE------------PRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 777766666666553 455666666666666666666655444443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.9e-12 Score=116.61 Aligned_cols=176 Identities=15% Similarity=0.093 Sum_probs=153.0
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC-------
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS------- 104 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn------- 104 (450)
......|.| ++|+..+.+++..+ ++..+|..++.++..++ .+++++.++++++..+|++
T Consensus 13 ~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 13 NKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEYEKG------------EYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHhCcccccchHHH
Confidence 344567899 89999999999999 99999999999999887 3899999999999999887
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------------hCCCChhhhhHHHHHHHHcCcChH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQK--------------------------ADSRNFHAWNYRRFVAASMNRSEE 158 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~--------------------------~dpkNyhAW~yR~~vl~~L~~~~e 158 (450)
..+|...+.++...+ .+++++.++++++. .+|.+..+|...+.++...+.+.
T Consensus 79 ~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (258)
T 3uq3_A 79 SKSFARIGNAYHKLG-DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP- 156 (258)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH-
Confidence 688998888888874 88888888888888 77788889999999998888886
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
+++++++++++.+|.+..+|..++.++..++. ++++++++.+++..+|++..+|..+..++....
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMS------------FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999998887764 789999999999999999999988777776543
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=2.8e-12 Score=118.90 Aligned_cols=176 Identities=12% Similarity=0.041 Sum_probs=155.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH----
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG---- 106 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~---- 106 (450)
-......|.| ++|+..+.+++..+|++..+|..++.++..++ .+++++..+++++. .|.+..
T Consensus 10 a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~a~~-~~~~~~~~~~ 75 (272)
T 3u4t_A 10 ADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA------------KYDLAQKDIETYFS-KVNATKAKSA 75 (272)
T ss_dssp HHHHHTTTCH-HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT------------CHHHHHHHHHHHHT-TSCTTTCCHH
T ss_pred HHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHh-ccCchhHHHH
Confidence 3444578899 89999999999999999999999999988886 48999999999999 555544
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHH-HHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS-LLL 185 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~-~LL 185 (450)
+|..++.++...+ .+++++++++++++.+|.+..+|...+.+...++.+. +++++++++++.+|.+..+|.+++ .++
T Consensus 76 ~~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 76 DFEYYGKILMKKG-QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP-LAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH-HHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH-HHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 4899999999884 9999999999999999999999999999999999996 899999999999999999999999 555
Q ss_pred HHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 186 ~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
... .++++++.+.+++..+|++..+|.++..++....
T Consensus 154 ~~~-------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 154 YNK-------------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp HTT-------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHH-------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 432 2799999999999999999999988777776553
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=3e-12 Score=124.63 Aligned_cols=189 Identities=13% Similarity=0.073 Sum_probs=162.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch--------------------
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS-------------------- 82 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~-------------------- 82 (450)
.....|.+ ++|+..+.+++.++|++..+|+..+.++..++..+.+ +|+.
T Consensus 108 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 108 TQAENENE-QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 33457888 8999999999999999999999999999888743211 1210
Q ss_pred --hhhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChH
Q 013048 83 --LKSILDEELRVVESALRQNFK--SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEE 158 (450)
Q Consensus 83 --~~~~~~eEL~~~e~aL~~nPK--ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~e 158 (450)
....+++++.++++++..+|+ +..+|...+.++...+ .+++++++++++++++|.+..+|...+.++...|.+.
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~- 264 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG-EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE- 264 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-
Confidence 125688999999999999999 8999999999998884 8999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC------------CcchHHH
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD------------DQSGWFY 226 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~------------deSaW~Y 226 (450)
+++++++++++.+|.+..+|..++.++..+++ ++++++++.+++.++|+ +..+|..
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGA------------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAA 332 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHCC------------CHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHH
Confidence 89999999999999999999999999998875 69999999999999998 3678888
Q ss_pred HHHHHccccc
Q 013048 227 HLWLLDQTVR 236 (450)
Q Consensus 227 ~r~LL~~~~~ 236 (450)
++..+....+
T Consensus 333 l~~~~~~~g~ 342 (365)
T 4eqf_A 333 LRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCc
Confidence 8877665433
No 35
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.45 E-value=6.9e-13 Score=113.50 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=111.8
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 96 SALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 96 ~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
++..+||+...+|..++-.+.+.+ .|++++++|+++++++|.+..+|.+++.++..+|.+. +++++++++|+.+|.+.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKG-DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ-RALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHH-HHHHHHHHHHHhhhhhh
Confidence 455689999999999999999884 9999999999999999999999999999999999996 89999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
.+|+.++.++..++. ++++++++.+++.++|+|..++.-++.+|
T Consensus 82 ~a~~~lg~~~~~~~~------------~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMRE------------WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999875 79999999999999999999987766554
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.44 E-value=1.3e-11 Score=119.19 Aligned_cols=176 Identities=9% Similarity=0.024 Sum_probs=129.8
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.....|.+ ++|+..+.+++..+|++..+|..++.++...+. +++++.++++++..+|++..+|...+
T Consensus 73 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 73 RRLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ------------ELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44466777 788888888888888888888888888887763 67888888888888888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCC---------------------------------------------------Chh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSR---------------------------------------------------NFH 141 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpk---------------------------------------------------Nyh 141 (450)
.++...+ .++++++.+.+++..+|. +..
T Consensus 140 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 140 VSFTNES-LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 7777663 555555555555555554 445
Q ss_pred hhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 142 AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 142 AW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
+|...+.++...|.+. ++++++++++..+|.+..+|..++.++..+++ ++++++.+.+++..+|++.
T Consensus 219 ~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYD-KAVDCFTAALSVRPNDYLLWNKLGATLANGNQ------------SEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp HHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcH
Confidence 5555566666666664 67777777777777777777777777666554 7889999999999999999
Q ss_pred chHHHHHHHHcccc
Q 013048 222 SGWFYHLWLLDQTV 235 (450)
Q Consensus 222 SaW~Y~r~LL~~~~ 235 (450)
.+|..+..++....
T Consensus 286 ~~~~~l~~~~~~~g 299 (368)
T 1fch_A 286 RSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC
Confidence 88877777765543
No 37
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.44 E-value=4.4e-12 Score=126.19 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 25 RVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 25 ~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
..+..........|.| ++|+.++.+++..+|++..+|+.++.++..++. +++++..+++++..+|++
T Consensus 27 ~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------------SKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCc
Confidence 3344444455567888 899999999999999999999999999888863 788888888888888888
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh---hhhhHH------------HHHHHHcCcChHHHHHHHHHHHH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF---HAWNYR------------RFVAASMNRSEEDELKYTEDMIC 169 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy---hAW~yR------------~~vl~~L~~~~eeELe~~dk~I~ 169 (450)
..+|...+.++...+ .+++++.+++++++.+|.+. .+|... +.++...+.+. +++++++++++
T Consensus 94 ~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~ 171 (450)
T 2y4t_A 94 TAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT-AAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Confidence 888888888887774 78888888888888888777 666543 33355556664 67777788888
Q ss_pred hccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 170 NNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 170 ~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
.+|.+..+|..++.++..++. ++++++.+.+++..+|++..+|+.+..++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 172 VCVWDAELRELRAECFIKEGE------------PRKAISDLKAASKLKNDNTEAFYKISTLY 221 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC------------GGGGHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888877777777777776654 34444445555555555544444444333
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.44 E-value=3.7e-13 Score=118.01 Aligned_cols=140 Identities=5% Similarity=-0.114 Sum_probs=127.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
.+|++ ++|+..+.+++..+|++..+|...+.+...++ .+++++.+++++|..+|++..+|..++.++
T Consensus 9 ~~~~~-e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~------------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 9 SKADV-ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK------------EYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp CHHHH-HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcChH-HHHHHHHHHhcccCcccHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666 79999999999999999999999999998887 489999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
...+ .+++++.++.++++++|.+..+|...+.++..++.+.+....+++++++.+|.|..+|..++.++...+
T Consensus 76 ~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 76 ELEE-NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHcC-chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9985 999999999999999999999999999999999998633344579999999999999999998887644
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4.3e-12 Score=115.52 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=151.3
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHhhhcCCCC----------Ccch----hhhhHHHH
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPEL-------YTAWNYRKLAVQHKLTENDS----------DPDS----LKSILDEE 90 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~-------ytAWn~Rr~iL~~l~~~~~~----------dpe~----~~~~~~eE 90 (450)
......|.+ ++|+..+.+++.++|++ ..+|...+.++..++..+.+ +|+. ....++++
T Consensus 46 ~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a 124 (258)
T 3uq3_A 46 AAEYEKGEY-ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHcccH-HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 344567888 89999999999999988 79999999999888641110 0100 01334455
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh
Q 013048 91 LRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (450)
Q Consensus 91 L~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~ 170 (450)
+..+++++..+|.+..+|..++.++...+ .+++++.+++++++.+|.+..+|...+.++..++.+. +++++++++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP-EAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHh
Confidence 55555555589999999999999999884 9999999999999999999999999999999999986 899999999999
Q ss_pred ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC------CCCcchHHHHH
Q 013048 171 NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD------PDDQSGWFYHL 228 (450)
Q Consensus 171 npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~d------P~deSaW~Y~r 228 (450)
+|.+..+|..++.++..++. ++++++++.+++.++ |++..++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKE------------YASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 99999999999999998875 799999999999999 98888775543
No 40
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=1e-11 Score=106.81 Aligned_cols=167 Identities=11% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++.++++++..+|.+..+|..
T Consensus 15 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 15 GISHAKAGRY-SQAVMLLEQVYDADAFDVDVALHLGIAYVKTG------------AVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHTCH-HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCH-HHHHHHHHHHHHhCccChHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3344567888 89999999999999999999999999988876 4899999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
.+.++...+ .+++++++++++++.+|.+..+|...+.++...+.+. ++++++.++++.+|.+..+|...+.++..++.
T Consensus 82 ~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFD-EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHH-HHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 999998874 8999999999999999999999999999999999986 89999999999999999999999999887764
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
++++++++.+++..+|++....
T Consensus 160 ------------~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 160 ------------HEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ------------HHHHHHHHHHHHHHHHCCCGGG
T ss_pred ------------HHHHHHHHHHHHHcCCCchhhH
Confidence 7999999999999999887543
No 41
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.41 E-value=2.1e-11 Score=117.63 Aligned_cols=189 Identities=14% Similarity=0.069 Sum_probs=163.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC----------CCcch--------------------
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPDS-------------------- 82 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~----------~dpe~-------------------- 82 (450)
.....|.+ ++|+..+.+++.++|++..+|...+.++..++..+. ..|+.
T Consensus 107 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 107 TQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred HHHHCcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 34467888 899999999999999999999999999888764211 11211
Q ss_pred -------hhhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc
Q 013048 83 -------LKSILDEELRVVESALRQNFK--SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM 153 (450)
Q Consensus 83 -------~~~~~~eEL~~~e~aL~~nPK--ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L 153 (450)
....+++++.++++++..+|. +..+|...+.++...+ .+++++.+++++++++|.+..+|...+.++..+
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 125678999999999999999 8899999999999884 899999999999999999999999999999999
Q ss_pred CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC-----------cc
Q 013048 154 NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD-----------QS 222 (450)
Q Consensus 154 ~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d-----------eS 222 (450)
|.+. +++++++++++.+|.+..+|..++.++..++. ++++++.+.+++.++|++ ..
T Consensus 265 g~~~-~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 265 NQSE-EAVAAYRRALELQPGYIRSRYNLGISCINLGA------------HREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp TCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred CCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 9986 89999999999999999999999999988875 799999999999999998 78
Q ss_pred hHHHHHHHHccccc
Q 013048 223 GWFYHLWLLDQTVR 236 (450)
Q Consensus 223 aW~Y~r~LL~~~~~ 236 (450)
+|..+..++....+
T Consensus 332 ~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 332 IWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC
Confidence 89888887766544
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=1e-11 Score=114.97 Aligned_cols=169 Identities=8% Similarity=-0.048 Sum_probs=93.1
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH-HHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK-WIL 115 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~-wvL 115 (450)
.|.+ ++|+..+.+++.++|++..+|...+.++..++ .+++++.++++++..+|.+..+|..++ .++
T Consensus 87 ~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 87 KGQD-SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp TTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT------------CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred cccH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc------------CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 3444 45555555555555555555555555555544 245555555555555555555555555 333
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc---ChHHHHHHHHHHHHhc---cCC-----hhHHHHHHHH
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR---SEEDELKYTEDMICNN---FSN-----YSAWHNRSLL 184 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~---~~eeELe~~dk~I~~n---psN-----ySAW~yR~~L 184 (450)
... .+++++++++++++++|.+..+|..++.+...++. +. +++.+++++++.. |.. ..+|.+.+.+
T Consensus 154 ~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 154 YNK--EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG-LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSC-TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 322 45555555555555555555555555555555544 32 3455555555443 221 1344444444
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 185 L~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
+..++ -++++++++.+++.++|+|..+|--...+...
T Consensus 231 ~~~~~------------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 231 YTINR------------DKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHcC------------CHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 44433 37999999999999999999999665555544
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.40 E-value=9.2e-11 Score=111.39 Aligned_cols=176 Identities=11% Similarity=-0.021 Sum_probs=113.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
.......|.+ ++|+..+.+++..+|++..+|..++.++..++. +++++..+++++..+|++..+|..
T Consensus 127 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3ieg_A 127 ALDAFDGADY-TAAITFLDKILEVCVWDAELRELRAECFIKEGE------------PRKAISDLKAASKLKSDNTEAFYK 193 (359)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred HHHHHHccCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445567888 899999999999999999999999988888763 667777777777777777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHH------------HHHHHHcCcChHHHHHHHHHHHHhccCChhH-
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYR------------RFVAASMNRSEEDELKYTEDMICNNFSNYSA- 177 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR------------~~vl~~L~~~~eeELe~~dk~I~~npsNySA- 177 (450)
.+.++...+ .+++++..+.++++.+|.+..+|.+. +.++...+.+. +++++++++++.+|.+...
T Consensus 194 la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~ 271 (359)
T 3ieg_A 194 ISTLYYQLG-DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT-DATSKYESVMKTEPSVAEYT 271 (359)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCchHHH
Confidence 766666653 66667777777777777666666533 33344445553 5666666666666665533
Q ss_pred ---HHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 178 ---WHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 178 ---W~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
+..++.++..++. ++++++.+.+++..+|++..+|..+..++..
T Consensus 272 ~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 272 VRSKERICHCFSKDEK------------PVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 2233444443332 4555666666666666655555555444433
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.1e-11 Score=128.84 Aligned_cols=176 Identities=10% Similarity=0.023 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSIL-DEELRVVESALRQNFKSYGAWHHRKWILSKGHS 120 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~-~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~ 120 (450)
++++..+..++...|+...+|..++.++...+ .+ ++++.++++++..+|++..+|...+.++...+
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g------------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g- 151 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTP------------DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG- 151 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS------------SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhcc------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Confidence 57888899999999999999999999998876 47 99999999999999999999999999999884
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc---------CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---------NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L---------~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
.+++++++++++++++|. ..+|...+.++..+ +.+. +++++++++++.+|.+..+|+.++.++..+.-.
T Consensus 152 ~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 152 DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVM-DSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 79999999999998 8775 899999999999999999999999999877100
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCC---CCcchHHHHHHHHccccc
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTDP---DDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~dP---~deSaW~Y~r~LL~~~~~ 236 (450)
.+. ..+.++++++++.+|+.++| ++..+|+.+..++.....
T Consensus 230 --~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 230 --TGQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp --TTC--CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred --hcc--ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 000 11237999999999999999 999999888877755433
No 45
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.39 E-value=9e-12 Score=130.82 Aligned_cols=162 Identities=9% Similarity=-0.126 Sum_probs=134.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
.|++ ++|+..+.++|..+|++..+|...+.++...+ .+++++..+++++..+|++..+|...+.++.
T Consensus 2 ~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADG-PRELLQLRAAVRHRPQDFVAWLMLADAELGMG------------DTTAGEMAVQRGLALHPGHPEAVARLGRVRW 68 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred CccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3667 79999999999999999999999999999886 4899999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHh---hhhhc
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL---LKRKV 193 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L---~~~~~ 193 (450)
..+ .+++++++++++++.+|.+..+|...+.++..++.++ +++++++++++.+|.+..++...+.++..+ +.
T Consensus 69 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--- 143 (568)
T 2vsy_A 69 TQQ-RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE-AAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--- 143 (568)
T ss_dssp HTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---
T ss_pred HCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---
Confidence 884 8999999999999999999999999999999999996 899999999999999999999999999887 54
Q ss_pred cCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 194 EGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 194 ~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
++++++.+.+++..+|++..+|.
T Consensus 144 ---------~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 144 ---------LDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp ---------HHHHHHHHHHHHHHTCCCSCHHH
T ss_pred ---------HHHHHHHHHHHHhcCCcccChHH
Confidence 79999999999999999888774
No 46
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=1.1e-11 Score=113.37 Aligned_cols=152 Identities=7% Similarity=-0.096 Sum_probs=136.5
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP-Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
+.+..+|..++.++...+ .+++++.++++++..+| ++..+|+.++.++..++ .+++++.+++++++
T Consensus 4 ~~~~~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~ 70 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAK------------NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-KYKEAADYFDIAIK 70 (228)
T ss_dssp CCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-cHHHHHHHHHHHHH
Confidence 455689999999998886 48999999999999999 99999999999999985 99999999999999
Q ss_pred hCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh-------hHHHHHHHHHHHhhhhhccCccchhchHHHHH
Q 013048 135 ADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY-------SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEY 207 (450)
Q Consensus 135 ~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy-------SAW~yR~~LL~~L~~~~~~g~~~~~~ileeEL 207 (450)
.+|.+..+|..++.++..++.+. +++++++++++.+|.|. .+|..++.++..++. +++++
T Consensus 71 ~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~A~ 137 (228)
T 4i17_A 71 KNYNLANAYIGKSAAYRDMKNNQ-EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN------------IEKAE 137 (228)
T ss_dssp TTCSHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC------------HHHHH
T ss_pred hCcchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc------------HHHHH
Confidence 99999999999999999999996 89999999999999999 567777777776654 79999
Q ss_pred HHHHHHHHhCCC--CcchHHHHHHHHcc
Q 013048 208 EFVHQAIFTDPD--DQSGWFYHLWLLDQ 233 (450)
Q Consensus 208 e~v~~AI~~dP~--deSaW~Y~r~LL~~ 233 (450)
+++.+++.++|+ +..+|..+..++..
T Consensus 138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 138 ENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 999999999999 88999777766643
No 47
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.38 E-value=2.1e-11 Score=114.92 Aligned_cols=174 Identities=10% Similarity=0.015 Sum_probs=108.2
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
...|.+ ++|+.++.+++..+|++..+|..++.++...+. +++++.++++++..+|.+..+|...+.+
T Consensus 32 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 32 LKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQAENEK------------DGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 345555 566666666666666666666666655555542 4555555555555555555555555555
Q ss_pred HHhCC------------------------------------------------CChHHHHHHHHHHHHhCCCChhhhhHH
Q 013048 115 LSKGH------------------------------------------------SSIDNELRLLDKFQKADSRNFHAWNYR 146 (450)
Q Consensus 115 L~kl~------------------------------------------------~~~~eEL~~~~k~L~~dpkNyhAW~yR 146 (450)
+...+ +.+++++.+++++++.+|.+..+|...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 54432 133455555666666666666666666
Q ss_pred HHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHH
Q 013048 147 RFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 147 ~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y 226 (450)
+.++...+.+. ++++++.+++..+|.+..+|..++.++..+++ ++++++.+.+++..+|++..+|..
T Consensus 179 a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 179 GVLYNLSNNYD-SAAANLRRAVELRPDDAQLWNKLGATLANGNR------------PQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp HHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhccHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHH
Confidence 66666666654 56666677777777766666666666665543 678888888888888888888877
Q ss_pred HHHHHccc
Q 013048 227 HLWLLDQT 234 (450)
Q Consensus 227 ~r~LL~~~ 234 (450)
+..++...
T Consensus 246 l~~~~~~~ 253 (327)
T 3cv0_A 246 MAVSYSNM 253 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66666554
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.38 E-value=2.3e-12 Score=112.86 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHH
Q 013048 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (450)
Q Consensus 84 ~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~ 163 (450)
...+++++..+..++..+|++..+|.+.+.+..+.+ .+++++++++++++++|+|..+|...+.++..++.++ +++++
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~-~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK-EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD-KAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH-HHHHH
Confidence 357899999999999999999999999999999884 9999999999999999999999999999999999996 89999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHH-HHHHHHhCCCCcchHHHHHHHHccc
Q 013048 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEF-VHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 164 ~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~-v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
+.++++.+|++..+|...+.++..++. +.++++. +++|+.++|++..+|..+..|+...
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDV------------TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCS------------SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988764 3555655 5899999999999998887777653
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=6.6e-11 Score=108.57 Aligned_cols=168 Identities=8% Similarity=-0.122 Sum_probs=152.6
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH--hCCCChHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWHH 110 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~--~nPKny~AW~h 110 (450)
.....|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++.++++++. .+|.+..+|..
T Consensus 80 ~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 80 VFQTEMEP-KLADEEYRKALASDSRNARVLNNYGGFLYEQK------------RYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 34457888 89999999999999999999999999998876 48999999999999 89999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
.+.++...+ .+++++.+++++++.+|.+..+|...+.++...+.+. +++++++++++.+|.+..+|...+.++..++.
T Consensus 147 la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 147 LGLVSLQMK-KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV-PARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224 (252)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC
Confidence 999998884 8999999999999999999999999999999999886 89999999999999999999988888877664
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHH
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~ 227 (450)
++++++++.+++..+|++..++.++
T Consensus 225 ------------~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 225 ------------RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp ------------HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 6899999999999999999877653
No 50
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=5.2e-11 Score=111.54 Aligned_cols=182 Identities=10% Similarity=-0.083 Sum_probs=152.0
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF 102 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~---ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP 102 (450)
.++..-......|.| ++|+..+.++|..+|++ ..+|..++.++..++ .+.+++..+++++..+|
T Consensus 17 ~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~------------~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 17 EAFERAMEFYNQGKY-DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK------------EYLLAASEYERFIQIYQ 83 (261)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHHHCC
Confidence 344444556678999 89999999999999999 999999999999887 48999999999999988
Q ss_pred CC---hHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCCChhhh-----------------hHHHHHHHHcC
Q 013048 103 KS---YGAWHHRKWILSK--------GHSSIDNELRLLDKFQKADSRNFHAW-----------------NYRRFVAASMN 154 (450)
Q Consensus 103 Kn---y~AW~hR~wvL~k--------l~~~~~eEL~~~~k~L~~dpkNyhAW-----------------~yR~~vl~~L~ 154 (450)
++ ..+++.++.++.. . +.+++++..++++++.+|.+..++ ...+.++...|
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55 6789999999887 6 478999999999999999998888 77788888899
Q ss_pred cChHHHHHHHHHHHHhccCC---hhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 155 RSEEDELKYTEDMICNNFSN---YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 155 ~~~eeELe~~dk~I~~npsN---ySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
.+. +++..++++++.+|.+ ..++...+.++..++.... .....+.++++++.+.+++..+|++..+-
T Consensus 163 ~~~-~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 163 LYE-AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV--RARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp CHH-HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CHH-HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch--hhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 986 8999999999999984 5689999999988753100 00122457999999999999999986443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=7.2e-11 Score=105.12 Aligned_cols=168 Identities=13% Similarity=-0.052 Sum_probs=148.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh-hcCCCCCcchhhhhHHHHHHHHHHHHH--hCCCChHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHK-LTENDSDPDSLKSILDEELRVVESALR--QNFKSYGAWH 109 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l-~~~~~~dpe~~~~~~~eEL~~~e~aL~--~nPKny~AW~ 109 (450)
.....|.+ ++|+..+.+++..+|++..+|...+.++... + .+++++.++++++. .+|.+..+|.
T Consensus 51 ~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 51 IYQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGRLN------------RPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred HHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 34467888 8999999999999999999999999999888 6 38999999999999 7788899999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhcc-CChhHHHHHHHHHHHh
Q 013048 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF-SNYSAWHNRSLLLSNL 188 (450)
Q Consensus 110 hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~np-sNySAW~yR~~LL~~L 188 (450)
..+.++...+ .+++++.+++++++.+|.+..+|...+.++...+.+. +++++++++++.+| .+..+|.....+....
T Consensus 118 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 118 NKGICSAKQG-QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG-DADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999884 8999999999999999999999999999999999986 89999999999999 9988887666665555
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHH
Q 013048 189 LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (450)
Q Consensus 189 ~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~ 227 (450)
+. .+++..++..++..+|++..+..++
T Consensus 196 ~~------------~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 196 GN------------AQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TC------------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Cc------------HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 43 5778888888889999999887664
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.36 E-value=8.6e-11 Score=116.82 Aligned_cols=183 Identities=10% Similarity=-0.009 Sum_probs=109.0
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch------------hhhhHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS------------LKSILDEEL 91 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~------------~~~~~~eEL 91 (450)
....|.+ ++|+..+.+++..+|++..+|+.++.++...+..+.+ +|+. ....+++++
T Consensus 153 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDY-TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4456777 7888888888888888888888888877777642110 0100 013455566
Q ss_pred HHHHHHHHhCCCChHHHHHH------------HHHHHhCCCChHHHHHHHHHHHHhCCCC----hhhhhHHHHHHHHcCc
Q 013048 92 RVVESALRQNFKSYGAWHHR------------KWILSKGHSSIDNELRLLDKFQKADSRN----FHAWNYRRFVAASMNR 155 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR------------~wvL~kl~~~~~eEL~~~~k~L~~dpkN----yhAW~yR~~vl~~L~~ 155 (450)
..+++++..+|.+..+|... +.++.+. +.+++++.+++++++++|.+ ..+|...+.++..+|.
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence 66666666666665555443 3333333 25556666666666666655 2355555555555555
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 156 ~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
+. ++++++++++..+|.+..+|..++.++..++. ++++++.+.+++.++|++..+|..+..+.
T Consensus 311 ~~-~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 311 PV-EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM------------YDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 54 56666666666666666666666666655543 56677777777777777766665555443
No 53
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.35 E-value=5.7e-11 Score=122.78 Aligned_cols=183 Identities=7% Similarity=-0.041 Sum_probs=117.0
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC----------CCcch------------hhhhHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPDS------------LKSILDEEL 91 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~----------~dpe~------------~~~~~~eEL 91 (450)
..+.|.+ ++|++.+.+++.++|++..+|+..+.++...+..+. ..|+. ..+.+++++
T Consensus 383 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKI-SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 3455666 677777777777777777777777777666653110 01100 013456666
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------CCCC-hhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA------DSRN-FHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~------dpkN-yhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
.++++++..+|++..+|...+.++.+.+ .+++++++++++++. +|.+ ..+|...+.++...|.++ ++++.+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~-~A~~~~ 539 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD-AAIDAL 539 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 6666666666666666666666666653 666666666666665 4444 456666666666666664 566666
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
+++++.+|.+..+|...+.++...++ ++++++.+.+++.++|++..+|..+..++
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKI------------PGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 66666666666666666666665543 68888888888888888888886655544
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.35 E-value=2e-11 Score=115.09 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=161.2
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC----------CCcc---------------------
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPD--------------------- 81 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~----------~dpe--------------------- 81 (450)
.....|.+ ++|+..+.+++.++|++..+|...+.++...+..+. .+|+
T Consensus 64 ~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 64 TQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------------
T ss_pred HHHHcCCH-HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHH
Confidence 34457888 799999999999999999999988888776653211 0111
Q ss_pred ------hhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 82 ------SLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 82 ------~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
.....+++++.++++++..+|.+..+|...+.++...+ .+++++.++.++++.+|.+..+|...+.++...+.
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN-NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 01256799999999999999999999999999999884 89999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC------------Ccch
Q 013048 156 SEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD------------DQSG 223 (450)
Q Consensus 156 ~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~------------deSa 223 (450)
+. +++++++++++.+|.+..+|...+.++..++. ++++++.+.+++..+|+ +..+
T Consensus 222 ~~-~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 222 PQ-EALDAYNRALDINPGYVRVMYNMAVSYSNMSQ------------YDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 86 89999999999999999999999999888765 79999999999999999 7888
Q ss_pred HHHHHHHHccccc
Q 013048 224 WFYHLWLLDQTVR 236 (450)
Q Consensus 224 W~Y~r~LL~~~~~ 236 (450)
|..+..++.....
T Consensus 289 ~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 289 WDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC
Confidence 8887777766443
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=4.2e-11 Score=116.01 Aligned_cols=178 Identities=8% Similarity=-0.047 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcC--CCCCcchhhhhHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHhC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTE--NDSDPDSLKSILDEELRVVESALR-QNFKSYGAWHHRKWILSKG 118 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~--~~~dpe~~~~~~~eEL~~~e~aL~-~nPKny~AW~hR~wvL~kl 118 (450)
++|+..++++|..+|++..+|...+.++...+.. ...+.+.....+++++..+++++. .+|++..+|...+-++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6899999999999999999999999988653100 001111112335899999999999 7999999999999999887
Q ss_pred CCChHHHHHHHHHHHHhCCCChh-hhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHH-hhhhhccCc
Q 013048 119 HSSIDNELRLLDKFQKADSRNFH-AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN-LLKRKVEGF 196 (450)
Q Consensus 119 ~~~~~eEL~~~~k~L~~dpkNyh-AW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~-L~~~~~~g~ 196 (450)
+ .++++.+.|+++++++|.+.. +|...+.++...+.++ ++++.++++++.+|.+..+|.....+-.. ++
T Consensus 113 ~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~------- 183 (308)
T 2ond_A 113 M-KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK-SGRMIFKKAREDARTRHHVYVTAALMEYYCSK------- 183 (308)
T ss_dssp T-CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC-------
T ss_pred C-CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-------
Confidence 4 899999999999999999997 9999999998888875 78999999999999988887644433221 22
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 197 ~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
.++++++.+.+++..+|++..+|..+..++..
T Consensus 184 -----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 184 -----DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 26888888888888889888888765555544
No 56
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.32 E-value=9.9e-11 Score=118.84 Aligned_cols=187 Identities=11% Similarity=0.040 Sum_probs=137.1
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
....|.+ ++|+..+.+++..+|+ ..+|...+.++...+ .+++++.++++++..+|++..+|..++.
T Consensus 253 ~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 318 (537)
T 3fp2_A 253 HFLKNNL-LDAQVLLQESINLHPT-PNSYIFLALTLADKE------------NSQEFFKFFQKAVDLNPEYPPTYYHRGQ 318 (537)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS------------CCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcccH-HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc------------CHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 3456666 6788888888888887 777777777766554 3577777777777777777777777777
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhc
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKV 193 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~ 193 (450)
++...+ .++++++.++++++.+|.+..+|...+.++...|.+. +++++++++++.+|.+..+|.+++.++..+++...
T Consensus 319 ~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 319 MYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT-ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 777763 7777777777777777777777777777777777775 67777777777777777777777777766654321
Q ss_pred --------------cC-c-c------------chh----------chHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 194 --------------EG-F-V------------SKE----------KVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 194 --------------~g-~-~------------~~~----------~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
.. . . ... +.++++++.+.+++..+|++..+|..+..++....
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 00 0 0 001 56799999999999999999999988888876644
Q ss_pred c
Q 013048 236 R 236 (450)
Q Consensus 236 ~ 236 (450)
.
T Consensus 477 ~ 477 (537)
T 3fp2_A 477 K 477 (537)
T ss_dssp C
T ss_pred c
Confidence 3
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=3.4e-10 Score=104.41 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=142.4
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|.+ ++|+..+.+++.++|++..+|...+.++...+ .+++++.++++++..+|++..+|..
T Consensus 50 ~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~ 116 (275)
T 1xnf_A 50 GVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAG------------NFDAAYEAFDSVLELDPTYNYAHLN 116 (275)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHcccH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHhcCccccHHHHH
Confidence 3345567888 89999999999999999999999999998886 4899999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
++.++...+ .+++++.+++++++.+|.+..+......+ ...+.+. +++.++.+++..+|.+...|......+.....
T Consensus 117 la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T 1xnf_A 117 RGIALYYGG-RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193 (275)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHH-HHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHhcCH
Confidence 999999884 99999999999999999998665555444 3345554 78888888888888887766544433222111
Q ss_pred hhc-------cCc------------------cchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 191 RKV-------EGF------------------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 191 ~~~-------~g~------------------~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
... ... -...+.++++++.+.+++..+|++...+.+...-+++
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 000 000 0012347999999999999999887766544444444
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.32 E-value=1.2e-10 Score=120.28 Aligned_cols=189 Identities=9% Similarity=0.000 Sum_probs=148.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.....|.+ ++|+.++.+++..+|++..+|+..+.++...+. +++++.++++++..+|++..+|....
T Consensus 348 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 348 SLHESGEK-NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK------------ISEARRYFSKSSTMDPQFGPAWIGFA 414 (597)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33467888 899999999999999999999999999888863 78888888888888888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
.++.+.+ .+++++++++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.|..+|...+.++...+...
T Consensus 415 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEG-EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL-LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 8777763 7788888888888888888888888888887777775 6788888888888888888887777776665431
Q ss_pred c----------c----Cccc---------------hhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccccc
Q 013048 193 V----------E----GFVS---------------KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTVR 236 (450)
Q Consensus 193 ~----------~----g~~~---------------~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~~ 236 (450)
. . +..+ ....++++++.+.+++..+|++..+|..+..++....+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 0 0 1011 12347999999999999999999999888887766433
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=7.4e-11 Score=108.85 Aligned_cols=168 Identities=12% Similarity=-0.017 Sum_probs=144.3
Q ss_pred cCCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLET----NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~----NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.|.| ++|+..+.+++.. +|.+..+|..++.++...+ .+++++.++++++..+|++..+|...+
T Consensus 18 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~la 84 (275)
T 1xnf_A 18 TLQQ-EVILARMEQILASRALTDDERAQLLYERGVLYDSLG------------LRALARNDFSQALAIRPDMPEVFNYLG 84 (275)
T ss_dssp CHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4566 7999999999998 4678899999999998887 489999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
.++...+ .+++++.+++++++.+|.+..+|...+.++..+|.+. +++++++++++.+|.+..+....... ...+
T Consensus 85 ~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--- 158 (275)
T 1xnf_A 85 IYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK-LAQDDLLAFYQDDPNDPFRSLWLYLA-EQKL--- 158 (275)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHH-HHHH---
T ss_pred HHHHHcc-CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCCChHHHHHHHHH-HHhc---
Confidence 9999884 9999999999999999999999999999999999986 89999999999999998665544433 2222
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHc
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLD 232 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~ 232 (450)
.+++++..+.+++...|.+...|......+.
T Consensus 159 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 1xnf_A 159 ---------DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189 (275)
T ss_dssp ---------CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred ---------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 2689999999999999998887764444443
No 60
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=5.5e-11 Score=119.51 Aligned_cols=188 Identities=8% Similarity=-0.111 Sum_probs=150.2
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..+.| ++|+.++.++|.++|++..++...+.+...++.. ...++++..+.+++..+|++..++...+..+
T Consensus 150 ~~~~y-~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~---------~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 150 GGNQN-ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW---------PPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp CTTHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS---------CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 34567 8999999999999999999999999887776531 1246778999999999999999999998888
Q ss_pred HhCC---CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 116 SKGH---SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 116 ~kl~---~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
..+. +.++++++++++++..+|.+..+|.+.+.++...+.+. ++++++.++++.+|.+..+++..+.+........
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~ 298 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD-KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV 298 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 7653 45779999999999999999999999999999999986 8999999999999999999999988765543221
Q ss_pred cc------C-ccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 193 VE------G-FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 193 ~~------g-~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
.. + .......++++++.+.+++..+|.+..+|+.+..++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 00 0 011233467788888888888888888887776665443
No 61
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.30 E-value=1.4e-11 Score=109.90 Aligned_cols=126 Identities=6% Similarity=-0.076 Sum_probs=113.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHH
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAW 108 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW 108 (450)
..+.+....|.. +.++|.++|++..+|..++.++...+ .+++++.++++++..+|+++.+|
T Consensus 13 ~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g------------~~~eA~~~~~~al~~~P~~~~~~ 73 (151)
T 3gyz_A 13 TAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKG------------RIEEAEVFFRFLCIYDFYNVDYI 73 (151)
T ss_dssp HHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHH
Confidence 344444455555 67889999999999999999999887 48999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 109 ~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
+.++.++..++ .+++++++|+++++++|.|..+|.+.+.++..+|.++ +++++++++++.+|...
T Consensus 74 ~~lg~~~~~~g-~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~-eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 74 MGLAAIYQIKE-QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL-KAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCHH
Confidence 99999999985 9999999999999999999999999999999999996 89999999999998764
No 62
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.29 E-value=9.4e-11 Score=117.82 Aligned_cols=182 Identities=9% Similarity=-0.037 Sum_probs=128.1
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCC----------CCcch------------hhhhHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTEND----------SDPDS------------LKSILDEELR 92 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~----------~dpe~------------~~~~~~eEL~ 92 (450)
...|.+ ++|+..+.+++..+|++..+|..++.++...+..+. .+|+. ..+.+++++.
T Consensus 281 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 281 ADRNDS-TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HTSSCC-TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHCCCH-HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555 456666666666666666666666655555543111 01110 0134777788
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh------hhhHHHHHHHH---cCcChHHHHHH
Q 013048 93 VVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH------AWNYRRFVAAS---MNRSEEDELKY 163 (450)
Q Consensus 93 ~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh------AW~yR~~vl~~---L~~~~eeELe~ 163 (450)
.+++++..+|.+..+|...+.++...+ .+++++.+++++++.+|.+.. +|...+.++.. .|.+. +++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI-EATNL 437 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH-HHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHH
Confidence 888888888888888887777777774 777888888888887777754 77777777777 77765 67788
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 164 TEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 164 ~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
+++++..+|.+..+|..++.++..++. ++++++.+.+++.++|++..+|....++.
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQED------------IDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcC------------HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 888888888888888777777776654 79999999999999999999997665544
No 63
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.28 E-value=9.1e-12 Score=111.05 Aligned_cols=118 Identities=7% Similarity=-0.093 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHH
Q 013048 90 ELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMIC 169 (450)
Q Consensus 90 EL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~ 169 (450)
+-..+.+++..+|++..+|+..+.++.+.+ .+++++.+|++++.++|.|..+|...+.++..++.++ +++++++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~-~Ai~~~~~al~ 98 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKG-RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ-QAADLYAVAFA 98 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHH-HHHHHHHHHHh
Confidence 335677888999999999999999999884 9999999999999999999999999999999999996 89999999999
Q ss_pred hccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 170 NNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 170 ~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
.+|.|..+|++++.++..+++ ++++++++++++.++|+.+
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~------------~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKA------------PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999886 7999999999999999865
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=1.4e-10 Score=112.18 Aligned_cols=171 Identities=9% Similarity=-0.007 Sum_probs=143.7
Q ss_pred hcCCC------cHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH-H
Q 013048 36 HNHIY------SKEAVELSTKLLE-TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG-A 107 (450)
Q Consensus 36 ~~gey------seeAL~lt~~~L~-~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~-A 107 (450)
..|.+ .++|+..++++|. ++|++..+|...+.++...+ .++++...++++|..+|+++. +
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~ 136 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM------------KYEKVHSIYNRLLAIEDIDPTLV 136 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTSSSSCTHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhccccCccHH
Confidence 35776 3799999999999 79999999999999998876 489999999999999999997 9
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH-cCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 108 WHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS-MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 108 W~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~-L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
|...+.++.+.+ .+++++..++++++.+|.+.++|...+.+-.. .|.+. ++++.++++++.+|.+..+|...+.++.
T Consensus 137 ~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 137 YIQYMKFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS-VAFKIFELGLKKYGDIPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999998888774 89999999999999999999998765555332 56665 8999999999999999999999988887
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHh---CCC-CcchHHHHHHHHc
Q 013048 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFT---DPD-DQSGWFYHLWLLD 232 (450)
Q Consensus 187 ~L~~~~~~g~~~~~~ileeELe~v~~AI~~---dP~-deSaW~Y~r~LL~ 232 (450)
.++. +++++..+.+++.. +|+ ....|.....++.
T Consensus 215 ~~g~------------~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 215 HLNE------------DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp TTCC------------HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HCCC------------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7654 68899999999985 553 6678865444443
No 65
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.27 E-value=1.4e-10 Score=117.74 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 59 ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
..+|..++.+....+ .+++++..+++++..+|+ ..+|...+.++... +.++++++++.++++.+|.
T Consensus 243 ~~~~~~~g~~~~~~~------------~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 243 ALALCYTGIFHFLKN------------NLLDAQVLLQESINLHPT-PNSYIFLALTLADK-ENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp HHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcc------------cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh-cCHHHHHHHHHHHhccCCC
Confidence 346777888877775 489999999999999999 99999999988777 4899999999999999999
Q ss_pred ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 139 NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
+..+|...+.++...+.+. ++++++++++..+|.+..+|..++.++..++. ++++++.+.+++..+|
T Consensus 309 ~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYK-NAKEDFQKAQSLNPENVYPYIQLACLLYKQGK------------FTESEAFFNETKLKFP 375 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCC
Confidence 9999999999999999986 89999999999999999999999999988775 4666666666666666
Q ss_pred CCcchHHHHHH
Q 013048 219 DDQSGWFYHLW 229 (450)
Q Consensus 219 ~deSaW~Y~r~ 229 (450)
++..+|.++..
T Consensus 376 ~~~~~~~~l~~ 386 (537)
T 3fp2_A 376 TLPEVPTFFAE 386 (537)
T ss_dssp TCTHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 66666655443
No 66
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.2e-10 Score=117.06 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=148.5
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCC----------Ccch------------h
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDS----------DPDS------------L 83 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~----------dpe~------------~ 83 (450)
.+...-......|.+ ++|+..+.+++..+|+ ..+|...+.++...+..+.+ +|+. .
T Consensus 239 ~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDP-LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 333444455667888 8999999999999999 99999999999988754321 2211 1
Q ss_pred hhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHH
Q 013048 84 KSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (450)
Q Consensus 84 ~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~ 163 (450)
...+++++..+++++..+|++..+|...+.++... +.+++++.+++++++.+|.+..+|...+.++...|.+. +++++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD-KALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT-TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH-HHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH-HHHHH
Confidence 24567777778888877888777777777777666 37778888888888888888888888888877777775 67778
Q ss_pred HHHHHHhccCChh------HHHHHHHHHHH---hhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 164 TEDMICNNFSNYS------AWHNRSLLLSN---LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 164 ~dk~I~~npsNyS------AW~yR~~LL~~---L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
+++++..+|.+.. +|..++.++.. ++. ++++++.+.+++..+|++..+|..+..++...
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN------------FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 8888887777755 77777777766 554 79999999999999999999998877777654
Q ss_pred c
Q 013048 235 V 235 (450)
Q Consensus 235 ~ 235 (450)
.
T Consensus 463 g 463 (514)
T 2gw1_A 463 E 463 (514)
T ss_dssp T
T ss_pred c
Confidence 3
No 67
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.25 E-value=6.1e-10 Score=108.29 Aligned_cols=166 Identities=12% Similarity=-0.004 Sum_probs=109.4
Q ss_pred cCCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLET--NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~--NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
.|.+ ++|++.+++++.. +|++.++|..++.++...++ +++++..+++ |.+..++..++.+
T Consensus 78 ~~~~-~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~------------~~~Al~~l~~-----~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 78 HSRR-DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN------------PDAALRTLHQ-----GDSLECMAMTVQI 139 (291)
T ss_dssp STTH-HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC------------HHHHHHHHTT-----CCSHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC------------HHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 4556 7999999999986 69999999999999988874 5666666665 6666666666666
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHH--HcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAA--SMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~--~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
+.+++ +++++++.++++++.+|.+...-...+|+-. ..+++. +++..++++++.+|.+..+|+.++.++..+++
T Consensus 140 ~~~~g-~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~-eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-- 215 (291)
T 3mkr_A 140 LLKLD-RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ-DAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-- 215 (291)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--
T ss_pred HHHCC-CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Confidence 66663 6666666666666666665433222222211 123443 56666666666666666666666666666554
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
++++++.+.+++..+|+|..+|+.+..++...
T Consensus 216 ----------~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~ 247 (291)
T 3mkr_A 216 ----------WEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247 (291)
T ss_dssp ----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 56666666666666676666666655555443
No 68
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=3e-10 Score=114.11 Aligned_cols=175 Identities=9% Similarity=-0.100 Sum_probs=148.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC
Q 013048 33 HNHHNHIYSKEAVELSTKLLETN--------PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS 104 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~N--------Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn 104 (450)
.....|+| ++|+..+++++.++ ++...+++.+++++..++. ..+++++.++++++..+|++
T Consensus 103 ~y~~~g~~-~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 103 VYYHMGRL-SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG----------NQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCT----------THHHHHHHHHHHHHHHSTTC
T ss_pred HHHHcCCh-HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcc----------ccHHHHHHHHHHHHHhCCCC
Confidence 34467999 89999999999874 4567889999998888763 36899999999999999999
Q ss_pred hHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc----ChHHHHHHHHHHHHhccCChhHH
Q 013048 105 YGAWHHRKWILSKGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR----SEEDELKYTEDMICNNFSNYSAW 178 (450)
Q Consensus 105 y~AW~hR~wvL~kl~--~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~----~~eeELe~~dk~I~~npsNySAW 178 (450)
..++...+.+...+. +..+++++.+.++++++|.+..++...+..+..++. +. ++++++++++..+|.+..+|
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~-~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG-EGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHhCccHHHHH
Confidence 999998887755431 366789999999999999999999999988877653 33 78999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 179 ~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
.+++.++...+. +.++++.+.+|+..+|++..+|+.+..+.
T Consensus 251 ~~lg~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 251 RSAAKFYRRKDE------------PDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------------hHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999988765 79999999999999999999987655443
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=5.5e-11 Score=129.25 Aligned_cols=140 Identities=9% Similarity=-0.104 Sum_probs=130.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR 111 (450)
......|.| ++|++.++++|.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|..+
T Consensus 441 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g------------~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 441 RALLDLGDV-AKATRKLDDLAERVGWRWRLVWYRAVAELLTG------------DYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHhcCCH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 345567999 89999999999999999999999999999887 48999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~ 187 (450)
+.++.+++ .+++ +++|+++++++|.+..+|.+++.++..+|.++ +++++++++++.+|.+..+|..++.++..
T Consensus 508 g~~~~~~g-~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 508 AATAELAG-NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV-GAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHHT-CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHcC-ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH-HHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999885 8888 99999999999999999999999999999996 89999999999999999999999998744
No 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=1.2e-09 Score=100.88 Aligned_cols=168 Identities=7% Similarity=-0.098 Sum_probs=141.4
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~y---tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
..-......|.| ++|+..+++++..+|++. .++..++.++...+ .+++++..+++++..+|++.
T Consensus 9 ~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~------------~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 9 ATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA------------DLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHCcCCC
Confidence 333455678999 899999999999999874 78999999998887 48999999999999999997
Q ss_pred H---HHHHHHHHHHhC-----------------CCChHHHHHHHHHHHHhCCCChhhhh-----------------HHHH
Q 013048 106 G---AWHHRKWILSKG-----------------HSSIDNELRLLDKFQKADSRNFHAWN-----------------YRRF 148 (450)
Q Consensus 106 ~---AW~hR~wvL~kl-----------------~~~~~eEL~~~~k~L~~dpkNyhAW~-----------------yR~~ 148 (450)
. +++.++.++..+ .+.+++++..++++++.+|.+..+|. ..+.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 899898887642 13578999999999999999998884 4455
Q ss_pred HHHHcCcChHHHHHHHHHHHHhccCCh---hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc
Q 013048 149 VAASMNRSEEDELKYTEDMICNNFSNY---SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (450)
Q Consensus 149 vl~~L~~~~eeELe~~dk~I~~npsNy---SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS 222 (450)
++...+.+. +++..++++++.+|.+. .++..++.++..++. ++++++.++.++...|++..
T Consensus 156 ~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~------------~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 156 YYTERGAWV-AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM------------NAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHTCHH-HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHcCcHH-HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhCCCchh
Confidence 556667775 89999999999999986 679999999998875 68999999999999997753
No 71
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.20 E-value=2.6e-10 Score=99.89 Aligned_cols=124 Identities=4% Similarity=-0.244 Sum_probs=112.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHH
Q 013048 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNEL 126 (450)
Q Consensus 47 lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL 126 (450)
.+.++|.++|++..+|..++.++...+ .+.+++..+++++..+|.+..+|..++.++...+ .+++++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~ 75 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSG------------XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG-QYDLAI 75 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh-hHHHHH
Confidence 378899999999999999999998887 4899999999999999999999999999999885 999999
Q ss_pred HHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 127 RLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 127 ~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
+++++++.++|.|..+|.+.+.++..+|.+. +++++++++++.+|.+......+..+
T Consensus 76 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 76 HSYSYGAVMDIXEPRFPFHAAECLLQXGELA-EAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 9999999999999999999999999999996 89999999999999887655444433
No 72
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.19 E-value=2.1e-10 Score=100.48 Aligned_cols=124 Identities=4% Similarity=-0.145 Sum_probs=113.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
..+.+++..+|++..+|+.++.++...+ .+++++.++.+++..+|.|..+|..++.++..++.+. ++++++++++..+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSG-XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD-LAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcC
Confidence 4578899999999999999999999884 9999999999999999999999999999999999996 8999999999999
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 013048 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (450)
Q Consensus 172 psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~ 229 (450)
|.|..+|++++.++..+++ ++++++++.+++.++|++......+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGE------------LAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 9999999999999998875 799999999999999998877644433
No 73
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.18 E-value=1e-09 Score=106.73 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=139.3
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.....|.+ ++|+..+.+ |++..++..++.++..+++ +++++..+++++..+|.+...-....
T Consensus 110 ~~~~~g~~-~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~------------~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 110 IYFYDQNP-DAALRTLHQ-----GDSLECMAMTVQILLKLDR------------LDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp HHHHTTCH-HHHHHHHTT-----CCSHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHhC-----CCCHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 34467888 899999988 9999999999999999874 89999999999999999875544445
Q ss_pred HHHHh-CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhh
Q 013048 113 WILSK-GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKR 191 (450)
Q Consensus 113 wvL~k-l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~ 191 (450)
|+-.. ..+.+++++.+++++++.+|.+..+|+.++.++..+|.++ ++++.+++++..+|.|..+|.+++.++..+++
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~- 249 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE-AAEGVLQEALDKDSGHPETLINLVVLSQHLGK- 249 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 44332 2257999999999999999999999999999999999996 89999999999999999999999999988775
Q ss_pred hccCccchhchHHH-HHHHHHHHHHhCCCCcchHHH
Q 013048 192 KVEGFVSKEKVLPD-EYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 192 ~~~g~~~~~~ilee-ELe~v~~AI~~dP~deSaW~Y 226 (450)
..+ ..+++.+++.++|+|..+-.+
T Consensus 250 -----------~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 250 -----------PPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 244 568889999999999866543
No 74
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=1.1e-10 Score=103.60 Aligned_cols=158 Identities=9% Similarity=-0.036 Sum_probs=131.2
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|.+ ++|+..+.++|..+|++..+|...+.++...+ .+++++..+++++..+| +...+..
T Consensus 13 a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g------------~~~~A~~~~~~a~~~~p-~~~~~~~ 78 (176)
T 2r5s_A 13 VSELLQQGEH-AQALNVIQTLSDELQSRGDVKLAKADCLLETK------------QFELAQELLATIPLEYQ-DNSYKSL 78 (176)
T ss_dssp HHHHHHTTCH-HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT------------CHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC------------CHHHHHHHHHHhhhccC-ChHHHHH
Confidence 3445578899 89999999999999999999999999999887 48999999999999999 7766655
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC--hhHHHHHHHHHHHh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN--YSAWHNRSLLLSNL 188 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN--ySAW~yR~~LL~~L 188 (450)
...+.........+++..++++++.+|.|..+|...+.++...|.++ +++.++.++++.+|.. ..+|...+.++..+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE-EALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH-HHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 55442211012235799999999999999999999999999999996 8999999999999876 56999999999888
Q ss_pred hhhhccCccchhchHHHHHHHHHHHHH
Q 013048 189 LKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 189 ~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
++ .++++..+.++|.
T Consensus 158 g~------------~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQ------------GNAIASKYRRQLY 172 (176)
T ss_dssp CS------------SCHHHHHHHHHHH
T ss_pred CC------------CCcHHHHHHHHHH
Confidence 75 3667777777763
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.16 E-value=2.4e-10 Score=98.18 Aligned_cols=127 Identities=3% Similarity=-0.224 Sum_probs=112.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHH
Q 013048 46 ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNE 125 (450)
Q Consensus 46 ~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eE 125 (450)
..+.+++.++|++..++..++.++...+ .+.+++..+++++..+|++..+|...+.++...+ .++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A 71 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG------------KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG-LYEQA 71 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHc------------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh-hHHHH
Confidence 4577889999999999999999988886 4899999999999999999999999999999884 99999
Q ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 126 LRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 126 L~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
+.++++++.++|.|..+|.+.+.++..+|.+. +++++++++++.+|.+...+..+..+..
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLD-GAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999996 8999999999999998776655544433
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.14 E-value=2.2e-10 Score=113.60 Aligned_cols=135 Identities=13% Similarity=-0.059 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---------------hH
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---------------YG 106 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---------------y~ 106 (450)
++|++.+.+++..+|+...+|+.++.++...+ .+++++.++++++..+|.+ ..
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g------------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEG------------KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 46777888889999999999999999999887 4899999999999999999 59
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
+|..++.++.+++ .+++++.+|+++++++|.|..+|..++.++..++.+. +++++++++++.+|.|..+|..++.++.
T Consensus 198 ~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQ-AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE-LARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999985 9999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred Hhhh
Q 013048 187 NLLK 190 (450)
Q Consensus 187 ~L~~ 190 (450)
.++.
T Consensus 276 ~~~~ 279 (336)
T 1p5q_A 276 RIRR 279 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 77
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.1e-09 Score=91.18 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
|....+|..++..+...+ .+++++..+++++..+|++..+|..++.++.+++ .+++++..+++++++
T Consensus 1 p~~a~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKS------------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEK 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 556788999999888876 4899999999999999999999999999999985 999999999999999
Q ss_pred CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc------cCChhHHHHHHHHHHH
Q 013048 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN------FSNYSAWHNRSLLLSN 187 (450)
Q Consensus 136 dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n------psNySAW~yR~~LL~~ 187 (450)
+|.+..+|..++.++..++.+. ++++++.++++.+ |.|..++.....+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYA-SALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999996 8999999999999 8888887776666544
No 78
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.13 E-value=2.4e-10 Score=98.17 Aligned_cols=125 Identities=6% Similarity=-0.140 Sum_probs=111.5
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
..+.+++..+|++..+++.++.++...+ .+++++.++.+++..+|.|..+|...+.++..++.+. ++++++++++..+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE-QALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcC
Confidence 4567788899999999999999998884 9999999999999999999999999999999999996 8999999999999
Q ss_pred cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 013048 172 FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (450)
Q Consensus 172 psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~L 230 (450)
|.|..+|.+++.++..+++ ++++++++.+++.++|++...+..+..+
T Consensus 83 p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGD------------LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999998875 7999999999999999998877554443
No 79
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.10 E-value=2.3e-10 Score=104.29 Aligned_cols=106 Identities=8% Similarity=-0.018 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-------Chh-----hhhHHHHHHHHcCcChHHHHHHHHHHHHh---
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSR-------NFH-----AWNYRRFVAASMNRSEEDELKYTEDMICN--- 170 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk-------Nyh-----AW~yR~~vl~~L~~~~eeELe~~dk~I~~--- 170 (450)
..|..++-.+.+. ++|++++.+|+++|+++|. +.. +|.+|+.++..+++++ +++++++++|++
T Consensus 12 ~~~~~~G~~l~~~-g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~-eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVA-GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD-EALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhhhc
Confidence 4567788888887 4999999999999999999 444 9999999999999996 899999999999
Q ss_pred ----ccCChhHH----HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 171 ----NFSNYSAW----HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 171 ----npsNySAW----~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
+|.+..+| +.|+.++..|++ +++++++|++++.++|+|.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr------------~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGR------------GAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHCCSCCT
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCC------------HHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 999999999986 79999999999999999987653
No 80
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=1.3e-09 Score=105.23 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=137.7
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
+...-......|.+ ++|+..+.++|..+|++..++...+.++...++ +++++..+++++..+|....
T Consensus 120 ~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~------------~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 120 XAQQAMQLMQESNY-TDALPLLXDAWQLSNQNGEIGLLLAETLIALNR------------SEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC------------HHHHHHHHTTSCGGGCSHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC------------HHHHHHHHHhCchhhcchHH
Confidence 34444556678999 899999999999999999999999999998874 89999999999999997766
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC--hhHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN--YSAWHNRSLL 184 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN--ySAW~yR~~L 184 (450)
.+...+..+... +..+.+++.+.+++..+|.|..++...+.++...|.++ ++++.+.++++.+|.+ ..+|...+.+
T Consensus 187 ~~~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~-~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 187 QGLVAQIELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNE-EALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH-HHHHHHHHHHhcccccccchHHHHHHHH
Confidence 655555555444 25678999999999999999999999999999999996 8999999999999999 8899999999
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 185 L~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
+..+++ ..+++..+.+++.
T Consensus 265 ~~~~g~------------~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGT------------GDALASXYRRQLY 283 (287)
T ss_dssp HHHHCT------------TCHHHHHHHHHHH
T ss_pred HHHcCC------------CCcHHHHHHHHHH
Confidence 998875 3566666666653
No 81
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.09 E-value=1.5e-09 Score=94.86 Aligned_cols=117 Identities=12% Similarity=-0.028 Sum_probs=108.4
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
.+++...+|..++.++...+ .+++++.++++++..+|.+..+|..++.++..++ .+++++.++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al 72 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARK------------EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELAT 72 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Confidence 35677889999999988876 4899999999999999999999999999999985 9999999999999
Q ss_pred HhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 134 KADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 134 ~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
+++|.+..+|..++.++..++.+. ++++++.++++.+|.|..+|..++..
T Consensus 73 ~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 73 VVDPKYSKAWSRLGLARFDMADYK-GAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999996 89999999999999999999887765
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=3.7e-09 Score=90.59 Aligned_cols=150 Identities=10% Similarity=0.059 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 59 ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
..+|..++.++...+ .+++++..+++++..+|++..+|...+.++...+ .+++++.+++++++.+|.
T Consensus 8 ~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAG------------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG-AVDRGTELLERSLADAPD 74 (186)
T ss_dssp HHHHHHHHHHHHHHT------------CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCC
Confidence 456777777777765 4899999999999999999999999999998884 899999999999999999
Q ss_pred ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 139 NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 139 NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
+..+|...+.++...+.+. ++++++++++..+|.+..+|...+.++..+++ ++++++++.+++..+|
T Consensus 75 ~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYD-LAVPLLIKVAEANPINFNVRFRLGVALDNLGR------------FDEAIDSFKIALGLRP 141 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc------------HHHHHHHHHHHHhcCc
Confidence 9999999999999999986 89999999999999999999999999887764 7999999999999999
Q ss_pred CCcchHHHHHHHHccc
Q 013048 219 DDQSGWFYHLWLLDQT 234 (450)
Q Consensus 219 ~deSaW~Y~r~LL~~~ 234 (450)
++..+|..+..++...
T Consensus 142 ~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHc
Confidence 9998887777666553
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=2.4e-09 Score=98.10 Aligned_cols=137 Identities=7% Similarity=-0.049 Sum_probs=114.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH----------------HHHHHHhCCCC
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH----------------RKWILSKGHSS 121 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h----------------R~wvL~kl~~~ 121 (450)
....+..++..+...+ .+++++.++++++..+|++..+|+. ++.++...+ .
T Consensus 3 ~~~~~~~~g~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAG------------QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR-N 69 (208)
T ss_dssp CHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT-C
T ss_pred CHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC-C
Confidence 3456667777777665 4899999999999999999999999 999998884 9
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhc
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ 201 (450)
+++++..++++++++|.+..+|..++.++..+|.+. +++++++++++.+|.|..+|..++.++...+..
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~---------- 138 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK-DALRMYEKILQLEADNLAANIFLGNYYYLTAEQ---------- 138 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH----------
Confidence 999999999999999999999999999999999996 899999999999999999999999998765431
Q ss_pred hHHHHHHHHHHHHHhCC
Q 013048 202 VLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 202 ileeELe~v~~AI~~dP 218 (450)
........+.+++..+|
T Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HHHHHHHHHC---CCCH
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 13455666666664333
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=3.2e-09 Score=102.25 Aligned_cols=166 Identities=7% Similarity=-0.079 Sum_probs=132.4
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPE------LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd------~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn--- 104 (450)
.+..|.| ++|+..+.++|.+.++ ...+|+..+.++..++ .+++++.++++++...|+.
T Consensus 47 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g------------~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG------------NSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHcCCH
Confidence 4467999 8999999999998643 3678999999998887 4899999999999988764
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 105 ---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
..++...+.++....+.++++++++++++++.|.+ ..++...+.++..+|.+. +++++++++++.+|.+.
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI-EASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhcCC
Confidence 46888889998883138999999999999998865 457888899999999996 89999999999998875
Q ss_pred h-------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 176 S-------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 176 S-------AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
. +|...+.++..++. +.+++.++.+++.++|+...+..
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATD------------AVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTC------------HHHHHHHHHGGGCC---------
T ss_pred cccHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCCCcHH
Confidence 4 56677777776654 79999999999999998876653
No 85
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=1.5e-09 Score=95.37 Aligned_cols=129 Identities=11% Similarity=0.017 Sum_probs=113.9
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
...|.| ++|+..+.+++..+|++..+|...+.++...+ .+++++.++++++..+|.+..+|...+.+
T Consensus 21 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 21 ASQQNP-EAQLQALQDKIRANPQNSEQWALLGEYYLWQN------------DYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp C------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456777 68999999999999999999999999998886 48999999999999999999999999999
Q ss_pred -HHhCCCCh--HHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHH
Q 013048 115 -LSKGHSSI--DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (450)
Q Consensus 115 -L~kl~~~~--~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW 178 (450)
.... +.+ ++++.+++++++.+|.+..+|...+.+....+.+. ++++++.++++.+|.+....
T Consensus 88 l~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 88 LYYQA-SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA-QAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHT-TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTCCTTSCHH
T ss_pred HHHhc-CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHH-HHHHHHHHHHhhCCCCccHH
Confidence 5555 477 99999999999999999999999999999999986 89999999999999997654
No 86
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=2.3e-09 Score=94.22 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH-HHHcCcC-hHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV-AASMNRS-EEDELK 162 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v-l~~L~~~-~eeELe 162 (450)
..+++++..+++++..+|.+..+|...+.++...+ .+++++.++.++++++|.+..+|...+.+ ....+.+ .++++.
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN-DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56788999999999999999999999999999884 99999999999999999999999999999 6677887 238999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~ 229 (450)
++++++..+|.+..+|...+.++..++. ++++++.+.+++..+|++...+.....
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQAN------------YAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccc------------HHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999999999999888765 799999999999999999877754433
No 87
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.5e-09 Score=90.35 Aligned_cols=117 Identities=8% Similarity=-0.048 Sum_probs=105.7
Q ss_pred CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHH
Q 013048 102 FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNR 181 (450)
Q Consensus 102 PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR 181 (450)
|....+|..++..+.+.+ .+++++.+++++++++|.+..+|..++.++..++.+. +++++++++++.+|.+..+|..+
T Consensus 1 p~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP-EAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCcHHHHHHH
Confidence 445678889999888874 9999999999999999999999999999999999996 89999999999999999999999
Q ss_pred HHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC------CCCcchHHHHHHHHc
Q 013048 182 SLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD------PDDQSGWFYHLWLLD 232 (450)
Q Consensus 182 ~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~d------P~deSaW~Y~r~LL~ 232 (450)
+.++..++. ++++++.+.+++.++ |++..++.....+..
T Consensus 79 g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 79 ATAQIAVKE------------YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHTTC------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhC------------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999998875 799999999999999 999988877665543
No 88
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.05 E-value=8.5e-10 Score=100.48 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHhCCCChHHHH
Q 013048 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-------SYG-----AWHHRKWILSKGHSSIDNEL 126 (450)
Q Consensus 59 ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK-------ny~-----AW~hR~wvL~kl~~~~~eEL 126 (450)
...|..++..+..++ .+++++.+|+++|..+|. +.. +|++|+.++.+++ ++++++
T Consensus 11 a~~~~~~G~~l~~~g------------~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-r~~eAl 77 (159)
T 2hr2_A 11 AYLALSDAQRQLVAG------------EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-SFDEAL 77 (159)
T ss_dssp HHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-CHHHHH
Confidence 456778888888886 499999999999999999 544 9999999999995 999999
Q ss_pred HHHHHHHHh-------CCCChhhh----hHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHH
Q 013048 127 RLLDKFQKA-------DSRNFHAW----NYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (450)
Q Consensus 127 ~~~~k~L~~-------dpkNyhAW----~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~ 179 (450)
.+|+++|++ +|.+..+| +.|+.++..+++++ +++++++++|+++|.|-....
T Consensus 78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e-EAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA-EAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHCCSCCT
T ss_pred HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHH-HHHHHHHHHHhcCCCcHHHHH
Confidence 999999999 99999999 99999999999996 899999999999999875443
No 89
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.05 E-value=3.9e-10 Score=116.72 Aligned_cols=135 Identities=14% Similarity=-0.074 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---------------hH
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---------------YG 106 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---------------y~ 106 (450)
++|++.+.+++..+|+...+|+.++.++...+ .+.+++.+++++|..+|.+ ..
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g------------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGG------------KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 46777888899999999999999999999886 4899999999999999999 69
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
+|..++.++.+++ .+++++.+|+++++++|.|..+|.+++.++..++.+. +++.+++++++++|.|..+|..++.++.
T Consensus 319 ~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~-~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 319 AFLNLAMCYLKLR-EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE-SAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999995 9999999999999999999999999999999999996 8999999999999999999999999998
Q ss_pred Hhhh
Q 013048 187 NLLK 190 (450)
Q Consensus 187 ~L~~ 190 (450)
.++.
T Consensus 397 ~~~~ 400 (457)
T 1kt0_A 397 KAKE 400 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 90
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.05 E-value=2.2e-09 Score=93.69 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=106.1
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHH
Q 013048 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWH 179 (450)
Q Consensus 100 ~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~ 179 (450)
.++++..+|..++.++...+ .+++++.+++++++++|.+..+|..++.++..++.+. +++++++++++.+|.+..+|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARK-EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE-KAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHH
Confidence 35667888999999998884 9999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 013048 180 NRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLW 229 (450)
Q Consensus 180 yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~ 229 (450)
.++.++..+++ ++++++++.+++.++|++..+|..+..
T Consensus 84 ~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 84 RLGLARFDMAD------------YKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHHHTTC------------HHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHccC------------HHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999998875 799999999999999999999954443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=6.3e-09 Score=97.26 Aligned_cols=156 Identities=6% Similarity=-0.122 Sum_probs=131.8
Q ss_pred HHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHH
Q 013048 52 LETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRL 128 (450)
Q Consensus 52 L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---y~AW~hR~wvL~kl~~~~~eEL~~ 128 (450)
..++|++..++..++..+...+ .+++++..+++++..+|.+ ..+|..++.++.+.+ .+++++..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~ 74 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQG------------KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK-EYLLAASE 74 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT------------CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC-cHHHHHHH
Confidence 4578999999999999998886 4899999999999999999 999999999999985 99999999
Q ss_pred HHHHHHhCCCC---hhhhhHHHHHHHH--------cCcChHHHHHHHHHHHHhccCChhHH-----------------HH
Q 013048 129 LDKFQKADSRN---FHAWNYRRFVAAS--------MNRSEEDELKYTEDMICNNFSNYSAW-----------------HN 180 (450)
Q Consensus 129 ~~k~L~~dpkN---yhAW~yR~~vl~~--------L~~~~eeELe~~dk~I~~npsNySAW-----------------~y 180 (450)
++++++.+|.+ ..++...+.+... .+.+. ++++.++++++.+|.+..++ ..
T Consensus 75 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 75 YERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTR-KAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHH-HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHH-HHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998855 5688899999888 77775 89999999999999998887 55
Q ss_pred HHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc---chHHHHHHHHcc
Q 013048 181 RSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ---SGWFYHLWLLDQ 233 (450)
Q Consensus 181 R~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de---SaW~Y~r~LL~~ 233 (450)
++.++..++. +++++..+.+++..+|++. .+++.+..++..
T Consensus 154 la~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 154 AARLYERREL------------YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA 197 (261)
T ss_dssp HHHHHHHTTC------------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHccC------------HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 5666665553 7999999999999999954 477666655543
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=7.2e-09 Score=100.01 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=143.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSK 117 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~k 117 (450)
|..+.+.+. ..+...-|++..++...+..+...+ .+++++..+++++..+|++..++...+-++..
T Consensus 98 g~~~~~~l~--~~l~~~lp~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~ 163 (287)
T 3qou_A 98 GPQPEEAIR--ALLDXVLPREEELXAQQAMQLMQES------------NYTDALPLLXDAWQLSNQNGEIGLLLAETLIA 163 (287)
T ss_dssp SCCCHHHHH--HHHHHHSCCHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHH--HHHHHHcCCchhhHHHHHHHHHhCC------------CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 444444333 3333345999999999998888876 48999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCcc
Q 013048 118 GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (450)
Q Consensus 118 l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~ 197 (450)
.+ .+++++..+++++..+|.+...+...+..+...+... ++++.+.+++..+|.|..++...+.++...++
T Consensus 164 ~g-~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~------- 234 (287)
T 3qou_A 164 LN-RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT-PEIQQLQQQVAENPEDAALATQLALQLHQVGR------- 234 (287)
T ss_dssp TT-CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------
T ss_pred CC-CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC-ccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------
Confidence 84 9999999999999999977666666666666666665 68999999999999999999999999998875
Q ss_pred chhchHHHHHHHHHHHHHhCCCC--cchHHHHHHHHccccc
Q 013048 198 SKEKVLPDEYEFVHQAIFTDPDD--QSGWFYHLWLLDQTVR 236 (450)
Q Consensus 198 ~~~~ileeELe~v~~AI~~dP~d--eSaW~Y~r~LL~~~~~ 236 (450)
++++++.+.+++..+|++ ..+|..+..++....+
T Consensus 235 -----~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 235 -----NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp -----HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred -----HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 799999999999999999 7889888777766543
No 93
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.01 E-value=6.8e-09 Score=107.75 Aligned_cols=173 Identities=8% Similarity=-0.058 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-------hhcCCCCCcchhhhhHHHHHHHHHHHHH-hCCCChHHHHHHHH
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQH-------KLTENDSDPDSLKSILDEELRVVESALR-QNFKSYGAWHHRKW 113 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~-------l~~~~~~dpe~~~~~~~eEL~~~e~aL~-~nPKny~AW~hR~w 113 (450)
.+++.+++++|..+|.+..+|...+.++.. .+. .+......++++.++++++. .+|++..+|....-
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~-----~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD-----MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc-----hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 478899999999999999999999998876 332 10000012488999999997 89999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH-Hhhhh
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNF-HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS-NLLKR 191 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNy-hAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~-~L~~~ 191 (450)
++...+ .++++...|+++++++|.+. .+|...+.+..+.+.++ ++.+.+.++++..|.++..|...+.+.. ..+
T Consensus 330 ~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~-- 405 (530)
T 2ooe_A 330 YEESRM-KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK-SGRMIFKKAREDARTRHHVYVTAALMEYYCSK-- 405 (530)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC--
T ss_pred HHHhcC-CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH-HHHHHHHHHHhccCCchHHHHHHHHHHHHHcC--
Confidence 988874 89999999999999999986 59999998888888775 7899999999998888777664444421 122
Q ss_pred hccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
-++++...+.+++..+|++..+|..+.-++..
T Consensus 406 ----------~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 406 ----------DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ----------ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 26889999999999999999999765555544
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=1.4e-09 Score=96.45 Aligned_cols=155 Identities=9% Similarity=-0.036 Sum_probs=122.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 55 NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
||.....+..++.++...+ .+++++..+++++..+|++..+|...+.++...+ .+++++..+++++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQG------------EHAQALNVIQTLSDELQSRGDVKLAKADCLLETK-QFELAQELLATIPL 68 (176)
T ss_dssp ----CTTHHHHHHHHHHTT------------CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-CHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHhhh
Confidence 4555556666777776665 4899999999999999999999999999999884 99999999999999
Q ss_pred hCCCChhhhhHHHHHHH-HcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHH
Q 013048 135 ADSRNFHAWNYRRFVAA-SMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQA 213 (450)
Q Consensus 135 ~dpkNyhAW~yR~~vl~-~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~A 213 (450)
.+| +...+...+.+.. ..+... ++++.++++++.+|.|..+|+..+.++..+++ ++++++.+.++
T Consensus 69 ~~p-~~~~~~~~~~~~~~~~~~~~-~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~ 134 (176)
T 2r5s_A 69 EYQ-DNSYKSLIAKLELHQQAAES-PELKRLEQELAANPDNFELACELAVQYNQVGR------------DEEALELLWNI 134 (176)
T ss_dssp GGC-CHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHH
T ss_pred ccC-ChHHHHHHHHHHHHhhcccc-hHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------------HHHHHHHHHHH
Confidence 999 7766555443321 111222 47899999999999999999999999998875 79999999999
Q ss_pred HHhCCCC--cchHHHHHHHHccccc
Q 013048 214 IFTDPDD--QSGWFYHLWLLDQTVR 236 (450)
Q Consensus 214 I~~dP~d--eSaW~Y~r~LL~~~~~ 236 (450)
+..+|+. ..+|..+..++.....
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHhCcccChHHHHHHHHHHHHHhCC
Confidence 9999986 4588777777665433
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=2.8e-08 Score=80.14 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 60 tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
.+|+..+.++...+ .+++++..+++++..+|.+..+|.....++...+ .+++++.++++++..+|.+
T Consensus 2 ~~~~~l~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG------------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcC------------cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCc
Confidence 46777777777765 4899999999999999999999999988888774 8999999999999999999
Q ss_pred hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 013048 140 FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 140 yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~ 219 (450)
..+|...+.+....+.+. ++++++++++..+|.+..+|...+.++...+. ++++++.+.+++..+|+
T Consensus 69 ~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYD-EAIEYYQKALELDPRSAEAWYNLGNAYYKQGD------------YDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc------------HHHHHHHHHHHHccCCC
Confidence 999999999999888885 89999999999999999999998888877654 79999999999999986
Q ss_pred C
Q 013048 220 D 220 (450)
Q Consensus 220 d 220 (450)
.
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.98 E-value=1.4e-08 Score=100.72 Aligned_cols=126 Identities=11% Similarity=-0.018 Sum_probs=110.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHH
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPEL---------------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRV 93 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~---------------ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~ 93 (450)
..-......|.| ++|+..+.++|.++|++ ..+|+.++.++..++ .+++++.+
T Consensus 152 ~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g------------~~~~A~~~ 218 (336)
T 1p5q_A 152 ERGTVYFKEGKY-KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ------------AFSAAIES 218 (336)
T ss_dssp HHHHHHHHHTCH-HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT------------CHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC------------CHHHHHHH
Confidence 333344567899 89999999999999999 699999999999987 48999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 94 VESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 94 ~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
++++|..+|++..+|+.++.++..++ .+++++..++++++++|.|..+|...+.+...++.+.+.+-+.+.+++
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 999999999999999999999999999999998887655455555544
No 97
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=1e-08 Score=83.88 Aligned_cols=121 Identities=11% Similarity=0.049 Sum_probs=110.4
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
..|....+|..++.++...+ .+++++.++++++..+|++..+|..++.++... +.+++++.++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKG------------DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL-LEFQLALKDCEECI 77 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTT------------CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 35788899999999988876 379999999999999999999999999999877 48999999999999
Q ss_pred HhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 013048 134 KADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNL 188 (450)
Q Consensus 134 ~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L 188 (450)
+.+|.+..+|...+.++..++.+. +++++++++++.+|.+..+|...+.++..+
T Consensus 78 ~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 78 QLEPTFIKGYTRKAAALEAMKDYT-KAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999986 899999999999999999999888877654
No 98
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.97 E-value=2.6e-08 Score=103.32 Aligned_cols=169 Identities=7% Similarity=-0.035 Sum_probs=142.5
Q ss_pred cCCCc------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh-HHH
Q 013048 37 NHIYS------KEAVELSTKLLE-TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY-GAW 108 (450)
Q Consensus 37 ~geys------eeAL~lt~~~L~-~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny-~AW 108 (450)
.|.+. ++|++.++++|. ++|++..+|.....++...+ .++++...+++++..+|+++ .+|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~ 359 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM------------KYEKVHSIYNRLLAIEDIDPTLVY 359 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHSSSSCHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC------------CHHHHHHHHHHHhCccccCchHHH
Confidence 68883 389999999997 89999999999999988876 38999999999999999996 599
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH-HHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 013048 109 HHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA-ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (450)
Q Consensus 109 ~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl-~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~ 187 (450)
...+.++.+.+ .++++++.+.++++..|.+++.|...+++. ...|.+. ++...++++++.+|++..+|...+.++..
T Consensus 360 ~~~~~~~~~~~-~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~-~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 360 IQYMKFARRAE-GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS-VAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 99988887763 789999999999999999888887666653 3466664 89999999999999999999888888776
Q ss_pred hhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc----hHH-HHHHHH
Q 013048 188 LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS----GWF-YHLWLL 231 (450)
Q Consensus 188 L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS----aW~-Y~r~LL 231 (450)
++. ++++...+.+++...|.+.. .|. |..+..
T Consensus 438 ~g~------------~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 438 LNE------------DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp TTC------------HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred CCC------------HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 654 68899999999999877655 884 444433
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=4.7e-08 Score=78.84 Aligned_cols=125 Identities=21% Similarity=0.221 Sum_probs=113.8
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
...|++ ++|+..+.+++..+|++..+|...+.++...+ .+++++.++++++..+|.+..+|...+.+
T Consensus 12 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 12 YKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQG------------DYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCcH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 456888 89999999999999999999999988887775 48999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN 174 (450)
+...+ .+++++.+++++++.+|.+..+|...+.++...+.+. ++++++.+++..+|.+
T Consensus 79 ~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD-EAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHHSTTC
T ss_pred HHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH-HHHHHHHHHHccCCCC
Confidence 88874 8999999999999999999999999999999888886 7999999999998864
No 100
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=7e-09 Score=99.94 Aligned_cols=165 Identities=13% Similarity=-0.012 Sum_probs=127.1
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|.| ++|+..+.++|.++|++..+|..++.++..++ .+++++..+++++..+|.+..+|+.
T Consensus 11 g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 11 GNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ------------QPEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3445578999 89999999999999999999999999999887 4899999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
++.++..++ .+++++..+.++++++|.+........+...... +...+........+.+.....+.+.++. +
T Consensus 78 lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~l~~--~- 149 (281)
T 2c2l_A 78 LGQCQLEME-SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA----KKKRWNSIEERRIHQESELHSYLTRLIA--A- 149 (281)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH----HHHHHHHHHHTCCCCCCHHHHHHHHHHH--H-
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHH--H-
Confidence 999999885 9999999999999999977544443333322221 2223333334567888888777777653 2
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHH
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYH 227 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~ 227 (450)
.++++++.+.+|+..+|++.....-.
T Consensus 150 -----------~~~~A~~~~~~al~~~p~~~~~~~~l 175 (281)
T 2c2l_A 150 -----------ERERELEECQRNHEGHEDDGHIRAQQ 175 (281)
T ss_dssp -----------HHHHHHTTTSGGGTTTSCHHHHTHHH
T ss_pred -----------HHHHHHHHHHhhhccccchhhhhhHH
Confidence 25788888888888888776554433
No 101
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=4.4e-08 Score=83.33 Aligned_cols=126 Identities=16% Similarity=0.077 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
+...-......|.| ++|+..+.+++..+|++..+|..++.++..++ .+.+++.++++++..+|++..
T Consensus 16 ~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~ 82 (166)
T 1a17_A 16 LKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE------------CYGYALGDATRAIELDKKYIK 82 (166)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCcccHH
Confidence 33333444568888 89999999999999999999999999988876 489999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH--HHHcCcChHHHHHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV--AASMNRSEEDELKYTEDM 167 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v--l~~L~~~~eeELe~~dk~ 167 (450)
+|...+.++..++ .+++++.+++++++.+|.+..+|.+.+.+ ....+.+. ++++++.+.
T Consensus 83 ~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~ 143 (166)
T 1a17_A 83 GYYRRAASNMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE-RAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH-HHHHcccch
Confidence 9999999998884 89999999999999999999988665555 33334443 455555443
No 102
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.95 E-value=1.7e-08 Score=81.57 Aligned_cols=124 Identities=11% Similarity=0.021 Sum_probs=111.9
Q ss_pred HhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKF 132 (450)
Q Consensus 53 ~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~ 132 (450)
..+|....+|...+.+....+ .+++++.++++++..+|.+..+|..++.++...+ .+++++.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~ 72 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVE------------NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERA 72 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHH
Confidence 345677888888888887775 4899999999999999999999999999998884 899999999999
Q ss_pred HHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 133 L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
+..+|.+..+|...+.+...++.+. +++++++++++.+|.+..+|...+.++..++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 73 ICIDPAYSKAYGRMGLALSSLNKHV-EAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhcCccCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986 89999999999999999999999988877653
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=6.9e-08 Score=82.14 Aligned_cols=134 Identities=7% Similarity=-0.038 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
...+|...+.+....+ .+.+++..+++++..+|++..+|..++.++...+ .+++++.+++++++.+|
T Consensus 12 ~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAK------------DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCc
Confidence 3466777777777765 4899999999999999999999999999999884 89999999999999999
Q ss_pred CChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 138 RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 138 kNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
.+..+|...+.++..++.+. +++++++++++.+|.+..+|.+.+.+...+.. +.++++++.+.++..
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFR-AALRDYETVVKVKPHDKDAKMKYQECNKIVKQ----------KAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----------HHHHHHHHcccchHH
Confidence 99999999999999999986 89999999999999999998766555332211 236777777776554
No 104
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.94 E-value=4.7e-08 Score=78.98 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
+...-......|.+ ++|+..+.+++..+|++..+|..++.++...+ .+++++.++++++..+|++..
T Consensus 15 ~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~ 81 (131)
T 2vyi_A 15 LKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLG------------NYAGAVQDCERAICIDPAYSK 81 (131)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh------------chHHHHHHHHHHHhcCccCHH
Confidence 33334445567888 89999999999999999999999999998876 489999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~ 156 (450)
+|...+.++...+ .+++++.+++++++.+|.+..+|...+.+...++.+
T Consensus 82 ~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 82 AYGRMGLALSSLN-KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999884 899999999999999999999999999988877754
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.5e-08 Score=106.19 Aligned_cols=136 Identities=6% Similarity=-0.160 Sum_probs=124.8
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR 111 (450)
......|+| ++|++.+.++|.++|++..+|...+.++..++ .+++++.++++++..+|++..+|...
T Consensus 31 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~l 97 (568)
T 2vsy_A 31 DAELGMGDT-TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ------------RHAEAAVLLQQASDAAPEHPGIALWL 97 (568)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 344567899 89999999999999999999999999999887 48999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc---CcChHHHHHHHHHHHHhccCChhHHHHHH
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM---NRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L---~~~~eeELe~~dk~I~~npsNySAW~yR~ 182 (450)
+.++...+ .+++++++++++++.+|.+..+|...+.++..+ +.++ +++++++++++.+|.+..+|+...
T Consensus 98 a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 98 GHALEDAG-QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD-VLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH-HHHHHHHHHHhcCCcccChHHHhC
Confidence 99999884 999999999999999999999999999999999 7775 899999999999999998886544
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=5.4e-08 Score=87.09 Aligned_cols=135 Identities=7% Similarity=-0.016 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh
Q 013048 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140 (450)
Q Consensus 61 AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy 140 (450)
.++.++.++...+ .+++++..+++++ +| +..+|..++.++...+ .++++++++++++..+|.+.
T Consensus 8 ~~~~~g~~~~~~~------------~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 8 SLWNEGVLAADKK------------DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhC------------CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccch
Confidence 3456666666665 4899999999996 34 7889999999999884 99999999999999999999
Q ss_pred hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh----------------hHHHHHHHHHHHhhhhhccCccchhchHH
Q 013048 141 HAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY----------------SAWHNRSLLLSNLLKRKVEGFVSKEKVLP 204 (450)
Q Consensus 141 hAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy----------------SAW~yR~~LL~~L~~~~~~g~~~~~~ile 204 (450)
.+|..++.++..++.+. +++++++++++.+|.+. .+|.+++.++..++. ++
T Consensus 72 ~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~ 138 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYD-LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE------------WK 138 (213)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC------------HH
T ss_pred HHHHHHHHHHHHcccHH-HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC------------HH
Confidence 99999999999999996 89999999999888887 999999999988775 79
Q ss_pred HHHHHHHHHHHhCCCCcchH
Q 013048 205 DEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 205 eELe~v~~AI~~dP~deSaW 224 (450)
++++++.+++..+|++....
T Consensus 139 ~A~~~~~~al~~~p~~~~~~ 158 (213)
T 1hh8_A 139 KAEEQLALATSMKSEPRHSK 158 (213)
T ss_dssp HHHHHHHHHHTTCCSGGGGH
T ss_pred HHHHHHHHHHHcCcccccch
Confidence 99999999999999887654
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=5.6e-08 Score=79.40 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=98.9
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHH 110 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~h 110 (450)
-......|.+ ++|+..+.+++..+|++..+|..++.++...+ .+++++.++++++..+|.+..+|..
T Consensus 23 ~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 23 GNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL------------EFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp HHHHHHTTCS-HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT------------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHhCCCchHHHHH
Confidence 3344578999 89999999999999999999999999987776 4899999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcC
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN 154 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~ 154 (450)
.+.++...+ .+++++.+++++++.+|.+..+|...+.++...+
T Consensus 90 la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMK-DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999884 8999999999999999999999988888776554
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=5.5e-08 Score=87.03 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=114.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHH
Q 013048 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWH 109 (450)
Q Consensus 30 ~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~ 109 (450)
.-......|.| ++|+..+.+++ +| +..+|+.++.++..++ .+++++..+++++..+|++..+|.
T Consensus 12 ~g~~~~~~~~~-~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 12 EGVLAADKKDW-KGALDAFSAVQ--DP-HSRICFNIGCMYTILK------------NMTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHTTCH-HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCH-HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCccchHHHH
Confidence 33445578999 89999999996 44 6789999999998887 489999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCh----------------hhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC
Q 013048 110 HRKWILSKGHSSIDNELRLLDKFQKADSRNF----------------HAWNYRRFVAASMNRSEEDELKYTEDMICNNFS 173 (450)
Q Consensus 110 hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy----------------hAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps 173 (450)
.++.++...+ .++++++.++++++..|.|. .+|.+++.+...+|.+. +++++++++++.+|.
T Consensus 76 ~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 76 QRGMLYYQTE-KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK-KAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHcc-cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHH-HHHHHHHHHHHcCcc
Confidence 9999999884 99999999999999998887 99999999999999986 899999999999998
Q ss_pred Ch
Q 013048 174 NY 175 (450)
Q Consensus 174 Ny 175 (450)
+.
T Consensus 154 ~~ 155 (213)
T 1hh8_A 154 PR 155 (213)
T ss_dssp GG
T ss_pred cc
Confidence 74
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.89 E-value=1.7e-08 Score=104.47 Aligned_cols=123 Identities=10% Similarity=-0.012 Sum_probs=104.0
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHH
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPEL---------------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL 91 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~---------------ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL 91 (450)
+...-......|.| ++|+..+.++|.++|++ ..+|+.++.++..++ .+++++
T Consensus 271 ~~~~G~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g------------~~~~A~ 337 (457)
T 1kt0_A 271 VKEKGTVYFKGGKY-MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR------------EYTKAV 337 (457)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CHHHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc------------CHHHHH
Confidence 33334445568999 89999999999999999 799999999999987 489999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHH
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKY 163 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~ 163 (450)
..++++|..+|++..+|+.|+.++..++ .+++++..++++++++|.|..+|..++.+...++.+.+.+-..
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 9999999999999999999999999999998888765333333
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=8e-08 Score=88.57 Aligned_cols=165 Identities=7% Similarity=-0.058 Sum_probs=123.8
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny---~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
...++..++..+...+ .+++++..+++++..+|.+. .++..++.++.+.+ .++++++.++++++
T Consensus 3 ~~~~~~~~a~~~~~~g------------~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDG------------NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIR 69 (225)
T ss_dssp CHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 3467777888777776 48999999999999999874 78999999999884 99999999999999
Q ss_pred hCCCChh---hhhHHHHHHHHc------------------CcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh-
Q 013048 135 ADSRNFH---AWNYRRFVAASM------------------NRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK- 192 (450)
Q Consensus 135 ~dpkNyh---AW~yR~~vl~~L------------------~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~- 192 (450)
.+|++.. |+.+++.+...+ +.+ +++++.++++|+.+|.+..++.-+..+........
T Consensus 70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQA-RAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHH-HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHH-HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 9999986 888898887653 233 48999999999999999988754332211100000
Q ss_pred ---ccC-ccchhchHHHHHHHHHHHHHhCCCCc---chHHHHHHHHccccc
Q 013048 193 ---VEG-FVSKEKVLPDEYEFVHQAIFTDPDDQ---SGWFYHLWLLDQTVR 236 (450)
Q Consensus 193 ---~~g-~~~~~~ileeELe~v~~AI~~dP~de---SaW~Y~r~LL~~~~~ 236 (450)
..+ .-...+.+.+++..+++++..+|++. .+++++..++..+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 000 00112347999999999999999986 568777766655443
No 111
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.88 E-value=4.9e-08 Score=81.21 Aligned_cols=120 Identities=8% Similarity=-0.063 Sum_probs=105.0
Q ss_pred HhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKF 132 (450)
Q Consensus 53 ~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~ 132 (450)
..+|....+|...+.++...+ .+++++.++.+++..+|.+..+|..++.++..++ .+++++..+.++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a 69 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGR------------KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRA 69 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 467889999999999998886 4899999999999999999999999999999885 999999999999
Q ss_pred HHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC-----ChhHHHHHHHHHH
Q 013048 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS-----NYSAWHNRSLLLS 186 (450)
Q Consensus 133 L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps-----NySAW~yR~~LL~ 186 (450)
++++|.+..+|...+.++..++.+. ++++++.++++.+|. +...+.....+..
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYD-EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 899999999999998 5555554444433
No 112
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.87 E-value=2.5e-08 Score=83.01 Aligned_cols=119 Identities=8% Similarity=-0.095 Sum_probs=105.9
Q ss_pred HhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHH
Q 013048 99 RQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (450)
Q Consensus 99 ~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW 178 (450)
..+|.+..+|...+.++...+ .+++++.++.+++..+|.+..+|..++.++..++.+. +++.++.++++.+|.+..+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE-QALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCchhHHHH
Confidence 357889999999999999884 8999999999999999999999999999999999996 89999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC-----CcchHHHHHHHH
Q 013048 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD-----DQSGWFYHLWLL 231 (450)
Q Consensus 179 ~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~-----deSaW~Y~r~LL 231 (450)
..++.++..++. ++++++.+.+++.++|+ +..++...+.+.
T Consensus 81 ~~l~~~~~~~~~------------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 81 FFLGQCQLEMES------------YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhh------------HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999998875 79999999999999998 667776655544
No 113
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.87 E-value=2.9e-08 Score=86.36 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=59.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLET------------------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELR 92 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~------------------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~ 92 (450)
-......|.| ++|+..+.++|.+ +|.+..+|..++.++..++ .+.+++.
T Consensus 18 G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~------------~~~~A~~ 84 (162)
T 3rkv_A 18 GNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG------------DLHEAEE 84 (162)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT------------CHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC------------cHHHHHH
Confidence 3344567999 8999999999998 5555555555555555554 2555555
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh
Q 013048 93 VVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF 140 (450)
Q Consensus 93 ~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy 140 (450)
.++++|..+|.+..+|+.++.++..++ .+++++..+.++++++|.|.
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAW-KLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCCCH
Confidence 555555555555555555555555552 55555555555555555554
No 114
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.86 E-value=3.7e-08 Score=85.71 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHhCC
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------------------NFKSYGAWHHRKWILSKGH 119 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~------------------nPKny~AW~hR~wvL~kl~ 119 (450)
...+|..++..+...+ .+.+++..+.++|.. +|.+..+|..++.++.+++
T Consensus 10 ~a~~~~~~G~~~~~~~------------~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~ 77 (162)
T 3rkv_A 10 SVEALRQKGNELFVQK------------DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77 (162)
T ss_dssp HHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567788888887776 489999999999998 8888999999999999985
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh-hHHHHHHHHHHHhhh
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY-SAWHNRSLLLSNLLK 190 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy-SAW~yR~~LL~~L~~ 190 (450)
.+++++..|+++++++|.|..+|..++.++..+|.+. ++++++.++++.+|+|. ........+...+..
T Consensus 78 -~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 78 -DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLD-EAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp -CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 89999999999999998 556666666555543
No 115
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=6.4e-08 Score=80.72 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=108.1
Q ss_pred HhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 99 RQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 99 ~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
..+|++..+|..++.++...+ .+++++++++++++.+|.+ ..+|..++.++..++.+. ++++++++++..+|.+.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCG-DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD-KAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHhhCccCH
Confidence 357889999999999988874 8999999999999999988 899999999999999986 89999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
.+|..++.++..++. +++++.++.+++.++|++..+|..+..+..+
T Consensus 100 ~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 100 KALYRRSQALEKLGR------------LDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999988765 7999999999999999999999766555443
No 116
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=4.5e-08 Score=91.24 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=141.7
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH
Q 013048 28 QSQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99 (450)
Q Consensus 28 ~~~~~~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~ 99 (450)
...-......|.+ ++|+..+.+++.+ +|....+|...+.++...+ .+++++.++++++.
T Consensus 31 ~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 31 HNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN------------KYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
Confidence 3333444567899 8999999999995 7888899999999998886 37889999999987
Q ss_pred h--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--------CCChhhhhHHHHHHHHcCcChHHHHHH
Q 013048 100 Q--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD--------SRNFHAWNYRRFVAASMNRSEEDELKY 163 (450)
Q Consensus 100 ~--------nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d--------pkNyhAW~yR~~vl~~L~~~~eeELe~ 163 (450)
. +|....++...+.++...+ .+++++.++.+++++. |....+|...+.++...+.+. +++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~ 175 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE-EVEYY 175 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH-HHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 6 5777889999999998884 8999999999999874 677788999999999999886 89999
Q ss_pred HHHHHHh--------ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh---------CCCCcchHHH
Q 013048 164 TEDMICN--------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT---------DPDDQSGWFY 226 (450)
Q Consensus 164 ~dk~I~~--------npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~---------dP~deSaW~Y 226 (450)
+++++.. +|....+|...+.++..+++ ++++++++.+++.. +|.....|..
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK------------FKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 9999998 78888889999998888765 68888888888864 4445555544
Q ss_pred HHHHH
Q 013048 227 HLWLL 231 (450)
Q Consensus 227 ~r~LL 231 (450)
...+.
T Consensus 244 ~~~~~ 248 (311)
T 3nf1_A 244 AEERE 248 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 117
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=2.8e-08 Score=83.87 Aligned_cols=102 Identities=6% Similarity=0.015 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 013048 106 GAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (450)
Q Consensus 106 ~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL 185 (450)
..|..++.++.+. +.+++++..++++++.+|.+..+|...+.++..++.+. +++.+++++++.+|.+..+|..++.++
T Consensus 18 ~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKL-ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG-LAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577777777777 48999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred HHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 186 SNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 186 ~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
..+++ ++++++.+.+++..+|++.
T Consensus 96 ~~~g~------------~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHN------------ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHH------------HHHHHHHHHHHHC------
T ss_pred HHcCC------------HHHHHHHHHHHHHhCcCCC
Confidence 98876 7999999999999999865
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.83 E-value=6.2e-08 Score=90.32 Aligned_cols=160 Identities=10% Similarity=0.039 Sum_probs=132.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC---
Q 013048 33 HNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN--- 101 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n--- 101 (450)
.....|.+ ++|+..+.+++.+ +|....+++..+.++..++ .+++++.++++++...
T Consensus 78 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 78 VYRDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG------------KYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC------------cHHHHHHHHHHHHHHHHHh
Confidence 33457888 8999999999988 5777889999999988876 4789999999999763
Q ss_pred -----CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 102 -----FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA--------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 102 -----PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~--------dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
|....+|...+.++...+ .+++++++++++++. +|....+|...+.++...|.+. ++++++++++
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al 222 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFK-QAETLYKEIL 222 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Confidence 777888999999998884 899999999999998 7888889999999999999986 7999999999
Q ss_pred Hh-------------------------------------------------ccCChhHHHHHHHHHHHhhhhhccCccch
Q 013048 169 CN-------------------------------------------------NFSNYSAWHNRSLLLSNLLKRKVEGFVSK 199 (450)
Q Consensus 169 ~~-------------------------------------------------npsNySAW~yR~~LL~~L~~~~~~g~~~~ 199 (450)
.. +|.+..+|...+.++..+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------- 293 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK--------- 293 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---------
Confidence 74 35555666666666666554
Q ss_pred hchHHHHHHHHHHHHHhCCC
Q 013048 200 EKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 200 ~~ileeELe~v~~AI~~dP~ 219 (450)
++++++++.+++.+.|+
T Consensus 294 ---~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 294 ---FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---HHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHHHHHHhhc
Confidence 79999999999998885
No 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.82 E-value=2e-08 Score=96.58 Aligned_cols=174 Identities=7% Similarity=-0.087 Sum_probs=128.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhh-hcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC-
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPEL------YTAWNYRKLAVQHK-LTENDSDPDSLKSILDEELRVVESALRQNFKS- 104 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~------ytAWn~Rr~iL~~l-~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn- 104 (450)
.....|.| ++|+..+.++|.+.|+. ..+++..+.++... + .+++++.+++++|..+|+.
T Consensus 86 ~~~~~g~~-~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg------------~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 86 CFKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH------------DYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc------------CHHHHHHHHHHHHHHHHhCC
Confidence 33466888 89999999999998865 56888889888884 6 4899999999999998865
Q ss_pred -----hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh-------hhhHHHHHHHHcCcChHHHHHHHHHHHHhcc
Q 013048 105 -----YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH-------AWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (450)
Q Consensus 105 -----y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh-------AW~yR~~vl~~L~~~~eeELe~~dk~I~~np 172 (450)
..++...+.++..++ .+++++.+++++++++|.+.. +|...+.+...+|.+. +++.++++++.++|
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~p 230 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV-AAARTLQEGQSEDP 230 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH-HHHHHHHGGGCC--
T ss_pred ChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCC
Confidence 567888899998884 999999999999999998765 4667788888889886 89999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHH
Q 013048 173 SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 173 sNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y 226 (450)
+...+...+. +..+...-.. ...+.+++++..+++++.++|.+...+.-
T Consensus 231 ~~~~~~~~~~--l~~l~~~~~~---~~~~~~~~A~~~~~~~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 231 NFADSRESNF--LKSLIDAVNE---GDSEQLSEHCKEFDNFMRLDKWKITILNK 279 (292)
T ss_dssp -------HHH--HHHHHHHHHT---TCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred CCCCcHHHHH--HHHHHHHHHc---CCHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 9887654432 2222211000 01234799999999999999976555543
No 120
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.82 E-value=1.5e-08 Score=91.16 Aligned_cols=130 Identities=12% Similarity=-0.014 Sum_probs=102.0
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh----------------HHHHH
Q 013048 47 LSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY----------------GAWHH 110 (450)
Q Consensus 47 lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny----------------~AW~h 110 (450)
.++......++...+|..++.++...+ .+.+++.++++++...|++. .+|..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 26 IYDYTDEEKVQSAFDIKEEGNEFFKKN------------EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 333333344444455555555555443 35666666666666666555 88999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
++.++..++ .+++++.+++++++++|.+..+|..++.++..++.+. ++++++.++++.+|.+..++...+.+...++.
T Consensus 94 la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 94 LATCYNKNK-DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLE-EAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 999998884 9999999999999999999999999999999999996 89999999999999999999999998888765
No 121
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.82 E-value=1.7e-08 Score=100.17 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=76.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHH
Q 013048 29 SQFLHNHHNHIYSKEAVELSTKLLETNPELY-----------------TAWNYRKLAVQHKLTENDSDPDSLKSILDEEL 91 (450)
Q Consensus 29 ~~~~~~~~~geyseeAL~lt~~~L~~NPd~y-----------------tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL 91 (450)
..-......|+| ++|+..+.++|.++|++. .+|+.++.++..++. +++++
T Consensus 184 ~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~------------~~~A~ 250 (338)
T 2if4_A 184 MDGNSLFKEEKL-EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR------------YDEAI 250 (338)
T ss_dssp HHHHHTCSSSCC-HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC------------CHHHH
T ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC------------HHHHH
Confidence 334455578999 899999999999999988 388888888877763 68888
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
..++++|..+|++..+|+.++.++..++ .+++++..+.++++++|.|..++.....+........+++.+.+.+++..+
T Consensus 251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 251 GHCNIVLTEEEKNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888888888774 888888888888888888888888777765555444446667778888777
Q ss_pred cCCh
Q 013048 172 FSNY 175 (450)
Q Consensus 172 psNy 175 (450)
|.+.
T Consensus 330 p~~~ 333 (338)
T 2if4_A 330 DEGG 333 (338)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.81 E-value=3.2e-08 Score=78.23 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=98.6
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC--ChhH
Q 013048 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--NYSA 177 (450)
Q Consensus 100 ~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps--NySA 177 (450)
.+|.+..+|...+.++...+ .+++++.+++++++.+|.+..+|...+.++..++.++ +++++++++++.+|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAG-NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE-EAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCcccchHHH
Confidence 37889999999999998874 8999999999999999999999999999999999986 899999999999999 9999
Q ss_pred HHHHHHHHHHh-hhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 178 WHNRSLLLSNL-LKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 178 W~yR~~LL~~L-~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
|..++.++..+ +. ++++++++.+++..+|.+.
T Consensus 79 ~~~l~~~~~~~~~~------------~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGK------------EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSC------------SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCC------------HHHHHHHHHHHhhcccCCC
Confidence 99999998877 65 6899999999999999865
No 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.81 E-value=1.5e-07 Score=74.75 Aligned_cols=101 Identities=9% Similarity=-0.028 Sum_probs=63.9
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
....|.+ ++|+..+.+++..+|++..+|...+.++...+ .+++++..+++++..+|++..+|...+.
T Consensus 14 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 14 ALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG------------DYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc------------cHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3345666 56666666666666666666666666665554 2566666666666666666666666666
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~ 148 (450)
++...+ .+++++..+.++++.+|.+..+|...+.
T Consensus 81 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLN-RFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTT-CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666653 6666666666666666666666555443
No 124
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.81 E-value=1.1e-08 Score=106.71 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=112.4
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWI 114 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wv 114 (450)
...|+| ++|++.+.++|.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|+.++.+
T Consensus 17 ~~~g~~-~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 17 FKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE------------CYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp TTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 457888 89999999999999999999999999999887 48999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH--HHHcCcChHHHHHHHH-----------HHHHhccCChhHHHHH
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV--AASMNRSEEDELKYTE-----------DMICNNFSNYSAWHNR 181 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v--l~~L~~~~eeELe~~d-----------k~I~~npsNySAW~yR 181 (450)
+..++ .+++++++++++++++|.+..+|.+.+.+ +...+.+. ++++.++ +++..+|+...+++..
T Consensus 84 ~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 161 (477)
T 1wao_1 84 NMALG-KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE-RAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED 161 (477)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC-CC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred HHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH-HHhccccccchhHhhhhhhhcccccccccccccc
Confidence 99884 99999999999999999999999999888 55556665 6788888 8888888776665443
No 125
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.81 E-value=6.6e-08 Score=88.40 Aligned_cols=168 Identities=13% Similarity=0.066 Sum_probs=139.1
Q ss_pred cCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh--------
Q 013048 37 NHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-------- 100 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~-------- 100 (450)
.|.+ ++|+.++.++|.+ +|....+|+..+.++...+ .+++++.++++++..
T Consensus 14 ~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~ 80 (283)
T 3edt_B 14 LVPR-GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN------------KYKEAAHLLNDALAIREKTLGKD 80 (283)
T ss_dssp CSCS-SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHTCTT
T ss_pred CCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445 5667777776663 3788899999999998886 489999999999976
Q ss_pred CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh--
Q 013048 101 NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA--------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICN-- 170 (450)
Q Consensus 101 nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~--------dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~-- 170 (450)
+|....+|...+.++...+ .++++++++.+++.+ +|....++...+.++..++.+. ++++++.+++..
T Consensus 81 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~ 158 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE-EVEYYYRRALEIYA 158 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence 5778889999999998884 999999999999998 6888899999999999999986 899999999998
Q ss_pred ------ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh---------CCCCcchHHHHHHHH
Q 013048 171 ------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT---------DPDDQSGWFYHLWLL 231 (450)
Q Consensus 171 ------npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~---------dP~deSaW~Y~r~LL 231 (450)
+|.+..++...+.++..++. ++++++++.+++.+ +|.....|.....+.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGK------------YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE 222 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 88888899999999888765 68899999998876 666666775544443
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=3.3e-08 Score=78.16 Aligned_cols=108 Identities=6% Similarity=0.013 Sum_probs=100.0
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
++|++..+|...+.++...+ .+++++.++++++..+|.+..+|..++.++...+ .++++++++++++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~ 67 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAG------------NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE-RYEEAVDCYNYVI 67 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSC------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Confidence 47899999999999988876 4899999999999999999999999999999884 8999999999999
Q ss_pred HhCCC--ChhhhhHHHHHHHHc-CcChHHHHHHHHHHHHhccCCh
Q 013048 134 KADSR--NFHAWNYRRFVAASM-NRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 134 ~~dpk--NyhAW~yR~~vl~~L-~~~~eeELe~~dk~I~~npsNy 175 (450)
+.+|. +..+|...+.+...+ +.+. ++++++.+++..+|.+.
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEV-EAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSH-HHHHHHHHHGGGCCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHH-HHHHHHHHHhhcccCCC
Confidence 99999 999999999999999 9996 89999999999999764
No 127
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.80 E-value=4.7e-08 Score=96.02 Aligned_cols=183 Identities=7% Similarity=-0.148 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH
Q 013048 24 LRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR 99 (450)
Q Consensus 24 ~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~y----tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~ 99 (450)
...+...-......|.| ++|+..+.++|.++|++. .+|+..+.++..++ .+++++.++++++.
T Consensus 48 ~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 48 CLELALEGERLCNAGDC-RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG------------DYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
Confidence 33444444455678999 899999999999999987 58888999888876 48899999999998
Q ss_pred h------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHcCc------------
Q 013048 100 Q------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA------DSRNFHAWNYRRFVAASMNR------------ 155 (450)
Q Consensus 100 ~------nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~------dpkNyhAW~yR~~vl~~L~~------------ 155 (450)
. +|....+|...+.++...+ .+++++.++.++++. ++....++...+.++..++.
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMG-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 7 6888899999999998884 899999999999998 66777799999999998888
Q ss_pred -----ChHHHHHHHHHHHHhc------cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc--
Q 013048 156 -----SEEDELKYTEDMICNN------FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS-- 222 (450)
Q Consensus 156 -----~~eeELe~~dk~I~~n------psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS-- 222 (450)
+. ++++++.++++.. +....+|...+.++..+++ ++++++++.+++.+.|....
T Consensus 194 ~a~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 194 DVKEALT-RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD------------FQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHhcCCcH
Confidence 64 7888888888753 3334577777777776654 57777777777776665444
Q ss_pred ----hHHHHHHHHcc
Q 013048 223 ----GWFYHLWLLDQ 233 (450)
Q Consensus 223 ----aW~Y~r~LL~~ 233 (450)
++..+..++..
T Consensus 261 ~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 261 AERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 55555444433
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=1.4e-07 Score=74.89 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
...+|...+.++...+ .+++++.++++++..+|.+..+|...+.++...+ .+++++..++++++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVG------------NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG-DYQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHcc------------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCc
Confidence 3567778888777765 4899999999999999999999999999998874 89999999999999999
Q ss_pred CChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHH
Q 013048 138 RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLL 185 (450)
Q Consensus 138 kNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL 185 (450)
.+..+|...+.++..++.+. ++++++.++++.+|.+..+|...+.+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFE-EAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999986 899999999999999999888776653
No 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=7.7e-08 Score=86.40 Aligned_cols=120 Identities=8% Similarity=-0.077 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHhhhcCCCCCcchhhhh
Q 013048 23 KLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELY----------------TAWNYRKLAVQHKLTENDSDPDSLKSI 86 (450)
Q Consensus 23 k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~y----------------tAWn~Rr~iL~~l~~~~~~dpe~~~~~ 86 (450)
....+...-......|.| ++|+..+.++|.++|++. .+|..++.++..++ .
T Consensus 37 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------~ 103 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK------------D 103 (198)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT------------C
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc------------C
Confidence 333444444555678999 899999999999999987 89999999998886 4
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS 156 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~ 156 (450)
+++++.++++++..+|++..+|..++.++..++ .+++++.++.++++++|.+..++...+.+...++..
T Consensus 104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-FLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999884 899999999999999999999999888887766543
No 130
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.5e-07 Score=78.54 Aligned_cols=118 Identities=10% Similarity=-0.064 Sum_probs=107.1
Q ss_pred HhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 53 ETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YGAWHHRKWILSKGHSSIDNELRLL 129 (450)
Q Consensus 53 ~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---y~AW~hR~wvL~kl~~~~~eEL~~~ 129 (450)
..+|+...+|..++..+...+ .+.+++.++++++..+|.+ ..+|..++.++...+ .+++++.++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~ 88 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCG------------DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEA 88 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHH
Confidence 467889999999999888876 4899999999999999998 999999999998884 899999999
Q ss_pred HHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 130 DKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 130 ~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
+++++.+|.+..+|..++.++..++.+. ++++++.++++.+|.+..+|.....+
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGRLD-QAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999986 89999999999999999888655544
No 131
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.79 E-value=1.4e-07 Score=86.14 Aligned_cols=124 Identities=12% Similarity=0.073 Sum_probs=109.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh---
Q 013048 32 LHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ--- 100 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~--- 100 (450)
......|.+ ++|+..+.+++.+ +|....+|+..+.++...+ .+++++.++++++..
T Consensus 51 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 51 LVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG------------KYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHHHHH
Confidence 344567888 8999999999988 5778889999999988886 478999999999987
Q ss_pred -----CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHHcCcChHHHHHHHHHH
Q 013048 101 -----NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA--------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (450)
Q Consensus 101 -----nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~--------dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~ 167 (450)
+|....++...+.++...+ .+++++.++++++++ +|.+..++...+.+....|.+. +++++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~ 195 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ-DAETLYKEI 195 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Confidence 6888999999999999884 999999999999999 8888899999999999999986 899999999
Q ss_pred HHh
Q 013048 168 ICN 170 (450)
Q Consensus 168 I~~ 170 (450)
++.
T Consensus 196 l~~ 198 (283)
T 3edt_B 196 LTR 198 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=3.3e-08 Score=83.42 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=44.8
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..|++ ++|+..+.++|..+|++..+|..++.++..+++ +++++..+++++..+|.+..+|...+.++
T Consensus 29 ~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~------------~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 29 KLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEK------------DGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555 455555555555555555555555555554442 45555555555555555555555555555
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCC
Q 013048 116 SKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 116 ~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
...+ .+++++..++++++++|.+
T Consensus 96 ~~~g-~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEH-NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHH-HHHHHHHHHHHHHC-----
T ss_pred HHcC-CHHHHHHHHHHHHHhCcCC
Confidence 4442 4555555555555555543
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=2.9e-07 Score=73.66 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=104.9
Q ss_pred hCCCc-HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 54 TNPEL-YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKF 132 (450)
Q Consensus 54 ~NPd~-ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~ 132 (450)
.+|.. ..+|...+.++...+ .+++++.++++++..+|.+..+|...+.++...+ .+++++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~ 69 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQG------------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKA 69 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 45655 778888888887775 4899999999999999999999999999998884 899999999999
Q ss_pred HHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 013048 133 QKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSN 187 (450)
Q Consensus 133 L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~ 187 (450)
+..+|.+..+|...+.+....+.+. ++++++++++..+|.+..++...+.+...
T Consensus 70 ~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 70 LELDPNNAEAWYNLGNAYYKQGDYD-EAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999886 89999999999999999999888777654
No 134
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.75 E-value=1.2e-06 Score=81.75 Aligned_cols=129 Identities=8% Similarity=-0.042 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH----cCcChH
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSK----GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEE 158 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~k----l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~----L~~~~e 158 (450)
+++++.++++++..+ +..++...+.++.. . +.++++++++.++++.+ +..++.+.+.++.. .+.+.
T Consensus 94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~- 167 (273)
T 1ouv_A 94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLK- 167 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH-
T ss_pred HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHH-
Confidence 444555555554432 44445444444444 2 24445555555554443 34444444444444 33332
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
+++++++++++. .+..++...+.++..-. ....-++++++++.+++..+| ..+++.+..++..
T Consensus 168 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~--------~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 168 KALASYDKACDL--KDSPGCFNAGNMYHHGE--------GATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTC--------SSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCC--------CCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 455555555443 23344444444443300 001225666666666666654 4555555555543
No 135
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.75 E-value=7.8e-09 Score=102.69 Aligned_cols=145 Identities=10% Similarity=-0.013 Sum_probs=92.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh-----------------HHHHHHHHH
Q 013048 52 LETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY-----------------GAWHHRKWI 114 (450)
Q Consensus 52 L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny-----------------~AW~hR~wv 114 (450)
+...|+...+|+.++.++...+ .+.+++.++++++..+|.+. .+|..++.+
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g------------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~ 239 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEE------------KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSS------------CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888777665 47999999999999999987 499999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhcc
Q 013048 115 LSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVE 194 (450)
Q Consensus 115 L~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~ 194 (450)
+.+++ .+++++.+|+++++++|.|..+|..++.++..++.+. ++++++.++++.+|.|..++.....+......
T Consensus 240 ~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~-~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~---- 313 (338)
T 2if4_A 240 LIKLK-RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMD-SARDDFRKAQKYAPDDKAIRRELRALAEQEKA---- 313 (338)
T ss_dssp HHTTT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH-HHHHHHHHTTC-------------------------
T ss_pred HHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----
Confidence 99885 8999999999999999999999999999999999996 89999999999999999999887776544322
Q ss_pred CccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 195 GFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 195 g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
..+++...+.+++..+|++.
T Consensus 314 -------~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 314 -------LYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------------
T ss_pred -------HHHHHHHHHHHhhCCCCCCC
Confidence 24677788899999998765
No 136
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.74 E-value=1.1e-07 Score=92.03 Aligned_cols=173 Identities=9% Similarity=-0.072 Sum_probs=133.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh------CC
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELY----TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------NF 102 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~y----tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~------nP 102 (450)
.....|.| ++|+..+.++|.++|++. .+|...+.+....+ .+++++.++++++.. .|
T Consensus 18 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 18 RLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH------------DYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHHhccccH
Confidence 44568899 899999999999999984 67888888888776 478889999988876 45
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh------hhhhHHHHHHHHcCc--------------------C
Q 013048 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF------HAWNYRRFVAASMNR--------------------S 156 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy------hAW~yR~~vl~~L~~--------------------~ 156 (450)
....++...+.++...+ .+++++.++.+++++.++.. .++...+.+....+. +
T Consensus 85 ~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 66778888888888874 89999999999999887653 388888888888888 5
Q ss_pred hHHHHHHHHHHHHh------ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc------hH
Q 013048 157 EEDELKYTEDMICN------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS------GW 224 (450)
Q Consensus 157 ~eeELe~~dk~I~~------npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS------aW 224 (450)
. ++++++.+++.. .+....++...+.++..++. ++++++++.+++.+.|.... ++
T Consensus 164 ~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~ 230 (406)
T 3sf4_A 164 Q-AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------------FRDAVIAHEQRLLIAKEFGDKAAERRAY 230 (406)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4 788888888876 44445677777777777664 57777777777766665544 55
Q ss_pred HHHHHHHc
Q 013048 225 FYHLWLLD 232 (450)
Q Consensus 225 ~Y~r~LL~ 232 (450)
..+..++.
T Consensus 231 ~~la~~~~ 238 (406)
T 3sf4_A 231 SNLGNAYI 238 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.72 E-value=8.4e-08 Score=81.43 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 105 YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 105 y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
..+|...|.++.+. +.|++++++|+++++++|.+..+|.+++.++..++.+. +++++++++|+++|.+..++..++.+
T Consensus 8 A~a~~~lG~~~~~~-~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQ-KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA-ECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHH-HHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34566778888877 48999999999999999999999999999999999996 89999999999999887766655555
Q ss_pred HHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCc
Q 013048 185 LSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQ 221 (450)
Q Consensus 185 L~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~de 221 (450)
+.+++... ...+.++++++++.+++..+|+.+
T Consensus 86 ~~~lg~~~-----~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 86 MSRAGNAF-----QKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHH-----HHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHhhCcCHH
Confidence 55554311 011237999999999999998643
No 138
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.72 E-value=6.7e-08 Score=87.85 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..+++++..+++++..+|++..+|...+-++..+. .++..++... . .++++.++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~-~~~~g~~al~------------------------~-~~eAi~~l 69 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELS-QFHSISDAKQ------------------------M-IQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHSCHHHHHH------------------------H-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-ccchhhhhHh------------------------H-HHHHHHHH
Confidence 45777777777777777777777777777776552 2221111110 0 14677777
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y 226 (450)
+++|+++|.+..||++++.++..++.. ..+.....+.++++++++++|+.++|++...|..
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l-~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFL-TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhccc-CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 777777777777777777777766531 0011111234899999999999999999866644
No 139
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.71 E-value=5.4e-08 Score=88.46 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH-- 119 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~-- 119 (450)
++|++.+.+++.+||++..+|+..+.++..++..+. .......+++++.+++++|+++|++..+|+..+-++..++
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~--g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS--ISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch--hhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999864111 1111235789999999999999999999999998887652
Q ss_pred --------CChHHHHHHHHHHHHhCCCCh
Q 013048 120 --------SSIDNELRLLDKFQKADSRNF 140 (450)
Q Consensus 120 --------~~~~eEL~~~~k~L~~dpkNy 140 (450)
+.+++++++|+++++++|.|.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 246677777777777777653
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.70 E-value=8e-08 Score=81.57 Aligned_cols=105 Identities=6% Similarity=-0.039 Sum_probs=89.5
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
++...+|...|.++...+ .+++++.+++++|..+|++..+|..++.++.+++ .++++++.+++++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~------------~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~-~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQK------------DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh-hHHHHHHHHHHHHHh
Confidence 345667788888888776 4999999999999999999999999999999985 999999999999999
Q ss_pred CCCChh-------hhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC
Q 013048 136 DSRNFH-------AWNYRRFVAASMNRSEEDELKYTEDMICNNFSN 174 (450)
Q Consensus 136 dpkNyh-------AW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN 174 (450)
+|.+.. ++...+.+...++.+. ++++++.+++..+|..
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~~-~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQNDLS-LAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSCCH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCcCH
Confidence 998865 5555666666777775 8999999999988853
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=1.2e-06 Score=69.89 Aligned_cols=108 Identities=21% Similarity=0.154 Sum_probs=96.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHH
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHR 111 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR 111 (450)
......|++ ++|++.+.+++..+|++..+|...+.++...+ .+++++.++++++..+|.+..+|...
T Consensus 17 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 17 NAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG------------DYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 344567888 89999999999999999999999999988876 48999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM 153 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L 153 (450)
+.++...+ .+++++.++++++..+|.+..++...+.+....
T Consensus 84 a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 84 GNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 99998884 899999999999999999999988887776543
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=4.9e-08 Score=101.86 Aligned_cols=98 Identities=9% Similarity=0.039 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
..+++++..+++++..+|++..+|..++.++.+++ .+++++++++++++++|.+..+|..++.++..++.++ ++++++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~-eA~~~~ 97 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR-AALRDY 97 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence 46999999999999999999999999999999985 9999999999999999999999999999999999996 899999
Q ss_pred HHHHHhccCChhHHHHHHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~L 184 (450)
+++++.+|.+..+|.+.+.+
T Consensus 98 ~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 98 ETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999887
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=2.5e-07 Score=89.02 Aligned_cols=147 Identities=7% Similarity=-0.053 Sum_probs=116.1
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
|+...+|..++.++...+ .+++++..+++++..+|.+..+|..++.++..++ .+++++..+++++++
T Consensus 1 p~~a~~~~~~g~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGR------------KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRALEL 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 677889999999988886 4899999999999999999999999999999985 999999999999999
Q ss_pred CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 136 dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
+|.|..+|..++.++..+|.+. ++++++.++++.+|.+........+....+ .+..........
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 131 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYD-EAIANLQRAYSLAKEQRLNFGDDIPSALRI---------------AKKKRWNSIEER 131 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---------------HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCccchhhHHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 9999999999999999999986 899999999999997743221111111111 112222223335
Q ss_pred hCCCCcchHHHHHHHH
Q 013048 216 TDPDDQSGWFYHLWLL 231 (450)
Q Consensus 216 ~dP~deSaW~Y~r~LL 231 (450)
..|.+.....+++.++
T Consensus 132 ~~~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI 147 (281)
T ss_dssp CCCCCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHH
Confidence 6778888877776665
No 144
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.66 E-value=2.8e-07 Score=85.77 Aligned_cols=174 Identities=9% Similarity=-0.090 Sum_probs=131.4
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh------CC
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPEL----YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------NF 102 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~----ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~------nP 102 (450)
.....|.+ ++|+..+.+++..+|++ ..++...+.+....+ .+++++.++++++.. .|
T Consensus 14 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 14 RLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH------------DYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHhhcccccH
Confidence 44567899 89999999999999998 467888888887776 378888888888876 56
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChh------hhhHHHHHHHHcCc--------------------C
Q 013048 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFH------AWNYRRFVAASMNR--------------------S 156 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh------AW~yR~~vl~~L~~--------------------~ 156 (450)
....+|...+.++...+ .+++++.++.+++++.++... ++...+.+...++. +
T Consensus 81 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 66788888888888874 899999999999998776543 88888888888887 5
Q ss_pred hHHHHHHHHHHHHh------ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc------hH
Q 013048 157 EEDELKYTEDMICN------NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS------GW 224 (450)
Q Consensus 157 ~eeELe~~dk~I~~------npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS------aW 224 (450)
. ++++++++++.. .+....++...+.++..++. ++++++++.+++...|.... +|
T Consensus 160 ~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 160 Q-AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------------FRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4 788888888775 33334567777777666654 57777777777776655444 55
Q ss_pred HHHHHHHcc
Q 013048 225 FYHLWLLDQ 233 (450)
Q Consensus 225 ~Y~r~LL~~ 233 (450)
.....++..
T Consensus 227 ~~l~~~~~~ 235 (338)
T 3ro2_A 227 SNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=3.9e-06 Score=80.10 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHH-----HHH-HHHHHHHhhhcCCCCCcchhhhhHHHHHHHHH
Q 013048 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYT-----AWN-YRKLAVQHKLTENDSDPDSLKSILDEELRVVE 95 (450)
Q Consensus 22 ~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~yt-----AWn-~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e 95 (450)
+....+..........|.| ++|++.+.++|...|.... .|. +.+.+....+ .+++++.+++
T Consensus 73 ~~~~~l~~~~~~~~~~~~y-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~A~~~~~ 139 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV------------DYEYCILELK 139 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC------------CHHHHHHHHH
Confidence 4445566667777789999 8999999999999887542 222 2333333332 5899999999
Q ss_pred HHHHhCCCC------hHHHHHHHHHHHhCCCChHHHHHHHHHHH---HhCCCCh----hhhhHHHHHHHHcCcChHHHHH
Q 013048 96 SALRQNFKS------YGAWHHRKWILSKGHSSIDNELRLLDKFQ---KADSRNF----HAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 96 ~aL~~nPKn------y~AW~hR~wvL~kl~~~~~eEL~~~~k~L---~~dpkNy----hAW~yR~~vl~~L~~~~eeELe 162 (450)
+++...++. ..+++..+.++...+ .+++++.++++++ +..|.+. .++.+.+.++..++.++ ++++
T Consensus 140 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~-~Al~ 217 (293)
T 2qfc_A 140 KLLNQQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE-ESLY 217 (293)
T ss_dssp HHHTTCCCSSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH-HHHH
Confidence 999876665 568888999998884 9999999999999 4455533 68999999999999996 8999
Q ss_pred HHHHHHHhccCC------hhHHHHHHHHHHHhhhhhccCccchhchHHHH-HHHHHHHHHh
Q 013048 163 YTEDMICNNFSN------YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDE-YEFVHQAIFT 216 (450)
Q Consensus 163 ~~dk~I~~npsN------ySAW~yR~~LL~~L~~~~~~g~~~~~~ileeE-Le~v~~AI~~ 216 (450)
++++++...+.. ..++++.+.+...++. ++++ .+++++|+.+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~------------~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEY------------EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHHH
Confidence 999999876431 5678888888888765 4666 5667777654
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=5.6e-08 Score=96.03 Aligned_cols=185 Identities=8% Similarity=-0.001 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHhhhcCCCC----------Ccch-
Q 013048 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYR-------KLAVQHKLTENDS----------DPDS- 82 (450)
Q Consensus 21 ~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~R-------r~iL~~l~~~~~~----------dpe~- 82 (450)
.+.++.+++.-+.. ..+.+ .+|++.+.+++.++|+...+|+.| +.+|..+.+...+ .|..
T Consensus 4 ~~~~~~~~~~~~~~-~~~d~-~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 4 TDRLASLFESAVSM-LPMSE-ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHHHHHHHHH-TTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred hHHHHHHHHHHhcc-cCCCH-HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 45677777766664 46777 899999999999999999999999 8888888753221 1110
Q ss_pred --------------------------------hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 83 --------------------------------LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLD 130 (450)
Q Consensus 83 --------------------------------~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~ 130 (450)
....|+++.+.++.++..+|... +.+.++-+..+.+ ++++++.+++
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~-r~~dA~~~l~ 159 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE-RWTDVIDQVK 159 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT-CHHHHHHHHT
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC-CHHHHHHHHH
Confidence 13679999999999999999888 8888998888884 9999999999
Q ss_pred HHHHhCCCC---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc--cC-ChhHHHHHHHHHHHhhhhhccCccchhchHH
Q 013048 131 KFQKADSRN---FHAWNYRRFVAASMNRSEEDELKYTEDMICNN--FS-NYSAWHNRSLLLSNLLKRKVEGFVSKEKVLP 204 (450)
Q Consensus 131 k~L~~dpkN---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n--ps-NySAW~yR~~LL~~L~~~~~~g~~~~~~ile 204 (450)
++.... .+ ..++.+.+.++..+|.+. +++.++++++... |. ...++.+++.+|..+++ .+
T Consensus 160 ~a~~~~-d~~~~~~a~~~LG~al~~LG~~~-eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------------~d 225 (282)
T 4f3v_A 160 SAGKWP-DKFLAGAAGVAHGVAAANLALFT-EAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------------ES 225 (282)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------------HH
T ss_pred HhhccC-CcccHHHHHHHHHHHHHHCCCHH-HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------------HH
Confidence 776643 33 248999999999999986 8999999998654 66 55699999999999986 69
Q ss_pred HHHHHHHHHHHhCCCCcchH
Q 013048 205 DEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 205 eELe~v~~AI~~dP~deSaW 224 (450)
++.+.+++++..+|+ ..+|
T Consensus 226 eA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 226 AAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHhcCCc-HHHH
Confidence 999999999999999 6666
No 147
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.65 E-value=5.3e-07 Score=88.89 Aligned_cols=157 Identities=11% Similarity=-0.019 Sum_probs=132.2
Q ss_pred HhhcCCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---
Q 013048 34 NHHNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn--- 104 (450)
....|.| ++|+..+.+++.+ .+....+++..+.+...++ .+.+++.++.+++...++.
T Consensus 113 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 113 ELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK------------QTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHhCccc
Confidence 3467999 8999999999998 3335688889999988886 4899999999999875544
Q ss_pred ----hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh------hhhhHHHHHHHHcCcChHHHHHHHHHHHH-----
Q 013048 105 ----YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF------HAWNYRRFVAASMNRSEEDELKYTEDMIC----- 169 (450)
Q Consensus 105 ----y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy------hAW~yR~~vl~~L~~~~eeELe~~dk~I~----- 169 (450)
..++...+.++..++ .++++++++++++++.+++- .++.+.+.+...+|.++ ++++++.++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~-~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLK-QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE-DAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhh
Confidence 357888888888884 99999999999999876654 48999999999999986 89999999999
Q ss_pred hc-cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC
Q 013048 170 NN-FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (450)
Q Consensus 170 ~n-psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~d 217 (450)
.+ |....++...+.++..++. ++++++++.+++.+.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGK------------IDKAHEYHSKGMAYS 294 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHH
Confidence 56 8888899999999888775 689999999999874
No 148
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.64 E-value=5.6e-06 Score=77.23 Aligned_cols=158 Identities=10% Similarity=-0.023 Sum_probs=85.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----hhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQH----KLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~----l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
.|.+ ++|+..+.+++. |++..+|...+.++.. .+ .+++++.++++++..+ +..+|+..+
T Consensus 19 ~~~~-~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~------------~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 19 EKDF-TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK------------NLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp TTCH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC------------CHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC------------CHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 3445 556666666655 5555566665555555 32 2455666666666553 555666666
Q ss_pred HHHHh----CCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH----cCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 113 WILSK----GHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 113 wvL~k----l~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~----L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
.++.. . +.+++++.++.++++.+ +..++...+.++.. .+.+. +++++++++++.+ +..++.+.+.+
T Consensus 82 ~~~~~g~~~~-~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~-~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVS-QNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK-KAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSC-CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH-HHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHhCCCCcc-cCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH-HHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 65555 3 35556666666665553 55556666655555 44443 5566666666544 44555555555
Q ss_pred HHH----hhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 185 LSN----LLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 185 L~~----L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
+.. .++ ++++++++.+++..+ +..+++.+..++
T Consensus 156 ~~~~~~~~~~------------~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 192 (273)
T 1ouv_A 156 YDAGRGTPKD------------LKKALASYDKACDLK--DSPGCFNAGNMY 192 (273)
T ss_dssp HHHTSSSCCC------------HHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHcCCCCCCC------------HHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 544 221 455555666555542 344444444444
No 149
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=7.1e-08 Score=79.79 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=78.8
Q ss_pred cCCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLET---NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKW 113 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~---NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~w 113 (450)
.|.+ ++|+..+.++|.+ +|++..+|...+.++..++ .+++++..+++++..+|++..++...+.
T Consensus 3 ~g~~-~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 3 LGLE-AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG------------EYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4666 6788888888888 5888888888888888776 3788888888888888888888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHc
Q 013048 114 ILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASM 153 (450)
Q Consensus 114 vL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L 153 (450)
++..++ .++++++++.+++..+|.+.....|..-+....
T Consensus 70 ~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 70 VLYNLG-RYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 888774 788888888888888888877776665554433
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.63 E-value=1.8e-07 Score=94.57 Aligned_cols=114 Identities=13% Similarity=-0.043 Sum_probs=71.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHH
Q 013048 28 QSQFLHNHHNHIYSKEAVELSTKLLE----------------TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL 91 (450)
Q Consensus 28 ~~~~~~~~~~geyseeAL~lt~~~L~----------------~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL 91 (450)
...-......|+| ++|+..+.++|. ++|.+..+|+.++.++..++ .+++++
T Consensus 227 ~~~g~~~~~~g~~-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g------------~~~~A~ 293 (370)
T 1ihg_A 227 KNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS------------DWQGAV 293 (370)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT------------CHHHHH
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc------------CHHHHH
Confidence 3334445577999 899999999999 55555666666666655554 256666
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCc
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNR 155 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~ 155 (450)
.+++++|..+|++..+|+.++.++..++ .++++++.++++++++|.|..++.....+...++.
T Consensus 294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 294 DSCLEALEIDPSNTKALYRRAQGWQGLK-EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665553 56666666666666666666655555555554443
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=1.7e-06 Score=82.59 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=125.3
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYT----AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN 101 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~yt----AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n 101 (450)
.+...+......|.| ++|+..+.+++...+.... +..+......... ...+++++..+++++...
T Consensus 77 ~l~~~i~~~~~~~~y-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK----------KVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT----------SSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc----------ccCHHHHHHHHHHHHHHh
Confidence 344445566778999 8999999999998887655 2222222222221 125899999999999876
Q ss_pred CCChH------HHHHHHHHHHhCCCChHHHHHHHHHHHHh-------CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 102 FKSYG------AWHHRKWILSKGHSSIDNELRLLDKFQKA-------DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 102 PKny~------AW~hR~wvL~kl~~~~~eEL~~~~k~L~~-------dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
++... +++..+.+....+ .+++++.+++++++. .+....++.+.+.++..++.+. ++++++++++
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~-~A~~~~~~al 223 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE-ESLYQVNKAI 223 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 55443 6778888888874 899999999999952 2333458899999999999996 8999999999
Q ss_pred HhccCC------hhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 013048 169 CNNFSN------YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (450)
Q Consensus 169 ~~npsN------ySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~ 216 (450)
+..+.. ..++++++.+...++. .++++++++++|+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----------~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEY-----------EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCC-----------cHHHHHHHHHHHHHH
Confidence 987555 5688899999888763 158889999988854
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=6.7e-07 Score=86.56 Aligned_cols=162 Identities=7% Similarity=-0.015 Sum_probs=125.3
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPEL------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~------ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn--- 104 (450)
.+..|.| ++|+..+.+++.+.++. ..+++..+.++..++ .+++++.++++++.+.++.
T Consensus 46 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g------------~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 46 FKNAKQL-EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ------------RMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHHHHHcCCH
Confidence 4467888 89999999999987643 557777787777775 3688888999888774432
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 105 ---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
..++...+.++.. +.++++++++++++++.+.. ..++...+.++..++.+. ++++++++++...+.+.
T Consensus 113 ~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD-EAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcC
Confidence 4567777788766 58999999999999998764 567888899999999996 89999999999887664
Q ss_pred h------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 176 S------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 176 S------AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
. ++..++.+...+++ +.+++.++.+++ .+|+.....
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~------------~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRAD------------YVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHT-TSTTSTTSH
T ss_pred ChhHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHh-CCCCCCCCH
Confidence 3 34444444433332 799999999999 999877654
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.58 E-value=2.1e-06 Score=70.45 Aligned_cols=104 Identities=11% Similarity=-0.031 Sum_probs=81.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---hH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELY---TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---YG 106 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~y---tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---y~ 106 (450)
.....|.| ++|+..+.+++..+|++. .+|...+.++...+ .+++++..+++++..+|++ ..
T Consensus 11 ~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 11 DALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYYATR------------NFQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHHCCCCcccHH
Confidence 44567788 788888888888888887 78888888877776 3788888888888888888 77
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 013048 107 AWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (450)
Q Consensus 107 AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl 150 (450)
++...+.++..++ .+++++..++++++.+|.+..+..-+..+-
T Consensus 78 ~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 78 GLLKLGLSQYGEG-KNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7888888888774 788888888888888888777766555443
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.55 E-value=8.9e-08 Score=79.18 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHh---CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccc
Q 013048 122 IDNELRLLDKFQKA---DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVS 198 (450)
Q Consensus 122 ~~eEL~~~~k~L~~---dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~ 198 (450)
+++++.++++++++ +|.+..+|...+.++..++.+. +++++++++++.+|.+..++.+.+.++..+++
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------- 76 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYR-KAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-------- 76 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC--------
Confidence 34445555555555 4555555555555555555543 45555555555555555555555555544443
Q ss_pred hhchHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 013048 199 KEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLL 231 (450)
Q Consensus 199 ~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL 231 (450)
++++++.+.+++..+|++.....|.+.+.
T Consensus 77 ----~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 77 ----YEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp ----HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred ----HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45555555555555555555554444443
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=1.3e-06 Score=70.48 Aligned_cols=119 Identities=8% Similarity=-0.041 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
|+...+|...+.+....+ .+++++.++++++..+|.+..+|...+.++...+ .+++++.++++++..
T Consensus 1 ~~~~~~~~~l~~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKK------------DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEV 67 (131)
T ss_dssp CHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh
Confidence 345677888888877765 4899999999999999999999999999998874 899999999999999
Q ss_pred CCCC-------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 136 DSRN-------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 136 dpkN-------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
+|.+ ..+|...+.+...++.+. +++++++++++.+| +...+.....+...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYK-DAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 9988 889999999999999986 89999999999998 6777777666665554
No 156
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=9.2e-07 Score=89.31 Aligned_cols=118 Identities=7% Similarity=-0.126 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHhCCCCh
Q 013048 59 YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR----------------QNFKSYGAWHHRKWILSKGHSSI 122 (450)
Q Consensus 59 ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~----------------~nPKny~AW~hR~wvL~kl~~~~ 122 (450)
..+|..++.++...+ .+++++..++++|. .+|.+..+|..++.++.+++ .+
T Consensus 223 a~~~~~~g~~~~~~g------------~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~ 289 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQ------------NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DW 289 (370)
T ss_dssp HHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-CH
Confidence 456777888777765 48999999999998 88999999999999999985 99
Q ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 123 DNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 123 ~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
++++++|+++++++|.+..+|..++.++..++.++ ++++++.++++.+|.|..++.....++..++.
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD-QALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 89999999999999999999999888887764
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=3.4e-07 Score=89.85 Aligned_cols=159 Identities=9% Similarity=-0.083 Sum_probs=125.9
Q ss_pred hhcCCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh------CC
Q 013048 35 HHNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------NF 102 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~------nP 102 (450)
...|++ ++|+..+.++|.+ .|....+|...+.++..++ .+++++..+++++.. .|
T Consensus 97 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~ 163 (411)
T 4a1s_A 97 FYLGDY-NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG------------RFDEAAICCERHLTLARQLGDRL 163 (411)
T ss_dssp HHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHCCCH-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHhhchH
Confidence 356888 8999999999998 7888899999999998887 378889999998887 66
Q ss_pred CChHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHhC------CCChhhhhHHHHHHHHcCcChHH
Q 013048 103 KSYGAWHHRKWILSKGHSS-----------------IDNELRLLDKFQKAD------SRNFHAWNYRRFVAASMNRSEED 159 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~-----------------~~eEL~~~~k~L~~d------pkNyhAW~yR~~vl~~L~~~~ee 159 (450)
....++...+.++...+ . ++++++++.+++++. +....+|...+.++...+.+. +
T Consensus 164 ~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~ 241 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ-A 241 (411)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-H
T ss_pred HHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH-H
Confidence 67778888888888774 6 888999999888764 333458888888888888886 7
Q ss_pred HHHHHHHHHHhccCChh------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 160 ELKYTEDMICNNFSNYS------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 160 ELe~~dk~I~~npsNyS------AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
++++++++++..+.+.. ++...+.++..++. ++++++++++++...|..
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 242 AIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ------------FEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC------------HHHHHHHHHHHHHHHHHc
Confidence 99999999998876555 77777777776654 567777777777666644
No 158
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.49 E-value=4.2e-07 Score=87.97 Aligned_cols=161 Identities=11% Similarity=-0.026 Sum_probs=117.2
Q ss_pred HHhhcCCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC--
Q 013048 33 HNHHNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS-- 104 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn-- 104 (450)
.....|.| ++|+..+.+++.+ .|....++...+.++..++ .+++++.++++++...|+.
T Consensus 56 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~~~~~~ 122 (406)
T 3sf4_A 56 AYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG------------NFDEAIVCCQRHLDISRELND 122 (406)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHhccc
Confidence 34457888 7999999999887 5666788888888888776 3788888888888877765
Q ss_pred ----hHHHHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHcC
Q 013048 105 ----YGAWHHRKWILSKGHSS--------------------IDNELRLLDKFQKA------DSRNFHAWNYRRFVAASMN 154 (450)
Q Consensus 105 ----y~AW~hR~wvL~kl~~~--------------------~~eEL~~~~k~L~~------dpkNyhAW~yR~~vl~~L~ 154 (450)
..++...+.++...+ . +++++.++.+++.+ .+....++...+.+...+|
T Consensus 123 ~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 123 KVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc
Confidence 347777777777663 6 78888888888776 3444567888888888888
Q ss_pred cChHHHHHHHHHHHHhccCChh------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 155 RSEEDELKYTEDMICNNFSNYS------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 155 ~~~eeELe~~dk~I~~npsNyS------AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.+. +++++++++++..+.... ++...+.++..++. ++++++++.+++...|..
T Consensus 202 ~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 202 NFR-DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE------------FETASEYYKKTLLLARQL 260 (406)
T ss_dssp BHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHT
T ss_pred CHH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHhC
Confidence 875 788888888887666544 77777777766654 455555555555554433
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=4.3e-06 Score=68.47 Aligned_cols=109 Identities=6% Similarity=-0.118 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 013048 62 WNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY---GAWHHRKWILSKGHSSIDNELRLLDKFQKADSR 138 (450)
Q Consensus 62 Wn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny---~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk 138 (450)
+..++.++...+ .+++++..++.++..+|.+. .+|...+.++...+ .+++++..+++++..+|.
T Consensus 5 ~~~~a~~~~~~~------------~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 5 AYNVAFDALKNG------------KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR-NFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp HHHHHHHHHHTT------------CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC------------CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHCCC
Confidence 445566665554 58999999999999999998 89999999999884 999999999999999999
Q ss_pred C---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 013048 139 N---FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLL 184 (450)
Q Consensus 139 N---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~L 184 (450)
+ ..++...+.++..+|.+. ++++++++++..+|.+..+..-+..+
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNT-EAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9 888999999999999986 89999999999999998776655443
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=2.5e-06 Score=68.78 Aligned_cols=116 Identities=14% Similarity=-0.038 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC-------h
Q 013048 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN-------Y 175 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN-------y 175 (450)
+...+|...+.+.... +.+++++.++.+++..+|.+..+|...+.++...+.+. +++.++.+++..+|.+ .
T Consensus 2 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAYKK-KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN-KCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhccccchhHHHHH
Confidence 4456788888888777 48999999999999999999999999999999999986 8999999999999988 7
Q ss_pred hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 176 SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 176 SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
.+|...+.++..++. ++++++++.+++..+| +...+.....+...
T Consensus 80 ~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 80 KAYARIGNSYFKEEK------------YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc------------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788888888877664 7999999999999999 57677665555443
No 161
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.42 E-value=1.2e-06 Score=81.41 Aligned_cols=161 Identities=11% Similarity=-0.018 Sum_probs=122.8
Q ss_pred HHhhcCCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChH
Q 013048 33 HNHHNHIYSKEAVELSTKLLET------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYG 106 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~ 106 (450)
.....|.+ ++|+..+.+++.+ .|....++...+.++..++ .+++++..+++++...++...
T Consensus 52 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 52 AYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG------------NFDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCH-HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHHHHHhcC
Confidence 34467888 8999999999888 6667788888888888876 478899999999887665533
Q ss_pred ------HHHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHcC
Q 013048 107 ------AWHHRKWILSKGHSS--------------------IDNELRLLDKFQKA------DSRNFHAWNYRRFVAASMN 154 (450)
Q Consensus 107 ------AW~hR~wvL~kl~~~--------------------~~eEL~~~~k~L~~------dpkNyhAW~yR~~vl~~L~ 154 (450)
++...+.++...+ . ++++++++.+++.+ .+....++...+.+....+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 7777777777663 5 78888888888776 3444567888888888888
Q ss_pred cChHHHHHHHHHHHHhccCChh------HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC
Q 013048 155 RSEEDELKYTEDMICNNFSNYS------AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD 220 (450)
Q Consensus 155 ~~~eeELe~~dk~I~~npsNyS------AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d 220 (450)
.+. +++++++++++..+.+.. ++...+.++..++. ++++++++.+++.+.|..
T Consensus 198 ~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 198 NFR-DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE------------FETASEYYKKTLLLARQL 256 (338)
T ss_dssp CHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHT
T ss_pred CHH-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHhh
Confidence 885 789999999987665544 77777777776654 577777888777776655
No 162
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.36 E-value=2.8e-06 Score=69.39 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHH
Q 013048 89 EELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMI 168 (450)
Q Consensus 89 eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I 168 (450)
+++..+++++..+|.+..+|...+.++...+ .+++++.++.+++..+|.+..+|.+.+.++..+|.+. ++++++.+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA-GARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Confidence 4678999999999999999999999999884 9999999999999999999999999999999999986 8999999999
Q ss_pred HhccCCh--hHHHHHHHHHHHhh
Q 013048 169 CNNFSNY--SAWHNRSLLLSNLL 189 (450)
Q Consensus 169 ~~npsNy--SAW~yR~~LL~~L~ 189 (450)
..+|.+. .+......++..++
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhc
Confidence 9988544 34444444444444
No 163
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.34 E-value=3.4e-06 Score=68.84 Aligned_cols=86 Identities=12% Similarity=-0.034 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCh
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSI 122 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~ 122 (450)
+++..+.+++..+|++..+|+..+.++...+ .+++++..+++++..+|.+..+|...+.++...+ .+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE------------QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG-DR 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC-CH
Confidence 6889999999999999999999999998886 4899999999999999999999999999999884 89
Q ss_pred HHHHHHHHHHHHhCCCChh
Q 013048 123 DNELRLLDKFQKADSRNFH 141 (450)
Q Consensus 123 ~eEL~~~~k~L~~dpkNyh 141 (450)
++++.++.++++++|.+..
T Consensus 70 ~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999999986443
No 164
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.32 E-value=1.8e-05 Score=78.05 Aligned_cols=158 Identities=9% Similarity=-0.113 Sum_probs=129.0
Q ss_pred hhcCCCcHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC----
Q 013048 35 HHNHIYSKEAVELSTKLLETN------PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS---- 104 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~N------Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn---- 104 (450)
...|+| ++|+..+.+++.+. |....+++..+.+...++ .+.+++..+++++...++.
T Consensus 112 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~------------~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 112 FDQKEY-VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK------------QTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHCCH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC------------CcHHHHHHHHHHHHHHHhCCCch
Confidence 467999 89999999999873 335667778888888776 4799999999999875542
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC------ChhhhhHHHHHHHHcCcChHHHHHHHHHHHH-----h
Q 013048 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSR------NFHAWNYRRFVAASMNRSEEDELKYTEDMIC-----N 170 (450)
Q Consensus 105 ---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpk------NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~-----~ 170 (450)
..++...+.+...+ +.++++++++.+++++.++ -..++...+.+...+|.++ ++++++.+++. .
T Consensus 179 ~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~-~A~~~~~~al~~~~~~~ 256 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ-MAVEHFQKAAKVSREKV 256 (378)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhhC
Confidence 44677778888877 4999999999999997432 2357788899999999886 89999999999 8
Q ss_pred ccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC
Q 013048 171 NFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD 219 (450)
Q Consensus 171 npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~ 219 (450)
+|....++...+.++..++. ++++++++.+++.+.+.
T Consensus 257 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 257 PDLLPKVLFGLSWTLCKAGQ------------TQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGGHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHCCT
T ss_pred ChhHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHH
Confidence 88888899999999888765 79999999999998654
No 165
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.14 E-value=2.6e-05 Score=59.75 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 58 LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 58 ~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
...+|...+.++...+ .+++++.++++++..+|.+..+|...+.++...+ .+++++.+++++++++|
T Consensus 8 ~~~~~~~la~~~~~~~------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG------------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCC
Confidence 4455666665555554 2566666666666666666666666666666553 56666666666666666
Q ss_pred CChhhhhHHHHHHHH
Q 013048 138 RNFHAWNYRRFVAAS 152 (450)
Q Consensus 138 kNyhAW~yR~~vl~~ 152 (450)
.+..+|...+.++..
T Consensus 75 ~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 NNAEAKQNLGNAKQK 89 (91)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 666666665555443
No 166
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=2e-05 Score=62.50 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
+++++..+++++..+|++..+|..++.++..++ .++++++.++++++++|.+
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLG-EYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCc
Confidence 455555555555555555555555555554442 4555555555555555554
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.13 E-value=3.2e-05 Score=67.76 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=117.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH------hCCCChHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNP-ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR------QNFKSYGA 107 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NP-d~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~------~nPKny~A 107 (450)
...|.| ++|.+....+.. +| ....+++..+.+....+ .+++++..+++++. ..|....+
T Consensus 3 ~~~g~~-~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDY-ALAERQAQALLA-HPATASGARFMLGYVYAFMD------------RFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CH-HHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccH-HHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 356778 678775544444 55 77889999999888876 48999999999998 55667788
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHh---CC----CChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChh----
Q 013048 108 WHHRKWILSKGHSSIDNELRLLDKFQKA---DS----RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYS---- 176 (450)
Q Consensus 108 W~hR~wvL~kl~~~~~eEL~~~~k~L~~---dp----kNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNyS---- 176 (450)
+...+.+....+ .++++++++.+++.+ .+ ....++...+.+...+|.+. +++.++++++........
T Consensus 69 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 69 LHQVGMVERMAG-NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA-GARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHhccchHHH
Confidence 888999998884 899999999999998 33 23456788888888889886 799999999976432222
Q ss_pred --HHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchH
Q 013048 177 --AWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW 224 (450)
Q Consensus 177 --AW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW 224 (450)
++...+.+...+++ ++++++++.+++.+.......+
T Consensus 147 ~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKN------------LLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCcC------------HHHHHHHHHHHHHHHHHcCCHH
Confidence 23445555554443 6889999999887755544444
No 168
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.12 E-value=5.4e-06 Score=65.51 Aligned_cols=84 Identities=15% Similarity=0.035 Sum_probs=56.9
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHH
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELYT-AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRK 112 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~yt-AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~ 112 (450)
....|+| ++|+..+.+++..+|++.. +|..++.++..++ .+++++..+++++..+|++..+|.+
T Consensus 10 ~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~-- 74 (99)
T 2kc7_A 10 LINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG------------DWQKALNNYQSAIELNPDSPALQAR-- 74 (99)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred HHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCcHHHHHH--
Confidence 3455666 6777777777777777777 7777777776665 3677777777777777777777654
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCC
Q 013048 113 WILSKGHSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 113 wvL~kl~~~~~eEL~~~~k~L~~dpkN 139 (450)
..+.+.+.++++++..+|.+
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHCC
T ss_pred -------HHHHHHHHHHHHHhccCccc
Confidence 12456666666666666654
No 169
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.11 E-value=2.7e-05 Score=76.58 Aligned_cols=148 Identities=7% Similarity=-0.016 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 61 AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~------nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
.+.+++.+....+ .+++++.++++++.. .+....+++..+.+...++ .+++++.++.++++
T Consensus 105 ~~~~~g~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 105 FNFFRGMYELDQR------------EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 3445888777765 489999999999986 2335678899999999884 99999999999999
Q ss_pred hCCCC-------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh------hHHHHHHHHHHHhhhhhccCccchhc
Q 013048 135 ADSRN-------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY------SAWHNRSLLLSNLLKRKVEGFVSKEK 201 (450)
Q Consensus 135 ~dpkN-------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy------SAW~yR~~LL~~L~~~~~~g~~~~~~ 201 (450)
+.++. ..++...+.+...+|.++ ++++++.++++..+... .++++.+.++..++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~----------- 239 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYE-DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ----------- 239 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-----------
Confidence 85544 357888899999999986 89999999999866554 478888888887764
Q ss_pred hHHHHHHHHHHHHH-----hC-CCCcchHHHHHHHHccc
Q 013048 202 VLPDEYEFVHQAIF-----TD-PDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 202 ileeELe~v~~AI~-----~d-P~deSaW~Y~r~LL~~~ 234 (450)
++++++++.+++. .+ |....+++.+..++...
T Consensus 240 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 240 -YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 7999999999998 46 77777777777666554
No 170
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.9e-05 Score=62.60 Aligned_cols=85 Identities=7% Similarity=0.034 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC------hhH
Q 013048 104 SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN------YSA 177 (450)
Q Consensus 104 ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN------ySA 177 (450)
+..+|..++.++... +.+++++++++++++++|.+..+|..++.++..++.+. +++++++++++.+|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ-GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYT-QAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCccHHHHHHHH
Confidence 467888899998887 49999999999999999999999999999999999996 8999999999999999 777
Q ss_pred HHHHHHHHHHhhh
Q 013048 178 WHNRSLLLSNLLK 190 (450)
Q Consensus 178 W~yR~~LL~~L~~ 190 (450)
+..++.++..++.
T Consensus 81 ~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 81 QYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777664
No 171
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=2.3e-05 Score=59.98 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHH
Q 013048 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~ 182 (450)
.+..+|...+.++...+ .+++++.+++++++.+|.+..+|...+.++...+.+. ++++++++++..+|.+..++...+
T Consensus 7 ~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD-EAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45678888888888874 8999999999999999999999999999999999986 899999999999999999999988
Q ss_pred HHHHHh
Q 013048 183 LLLSNL 188 (450)
Q Consensus 183 ~LL~~L 188 (450)
.++..+
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877653
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.02 E-value=1.9e-05 Score=76.28 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=109.6
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC------hHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS------YGAWHH 110 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn------y~AW~h 110 (450)
.+.| ++|+.++.++. .++...+ .+++++.++.+++...++. ..++..
T Consensus 29 ~~~~-~~A~~~~~~a~--------------~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 29 KPDY-DSAASEYAKAA--------------VAFKNAK------------QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp SCCH-HHHHHHHHHHH--------------HHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHH--------------HHHHHcC------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3555 67788777763 2333443 4899999999999887654 446777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC------hhHH
Q 013048 111 RKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN------YSAW 178 (450)
Q Consensus 111 R~wvL~kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN------ySAW 178 (450)
.+.++..+ +.+++++.++++++++.+.. ..++...+.++.. +.++ ++++++.+++...+.+ ..++
T Consensus 82 lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~-~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 82 AGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS-KAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH-HHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 77788777 48999999999999985432 3577778888877 7775 8999999999988764 3567
Q ss_pred HHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcc
Q 013048 179 HNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (450)
Q Consensus 179 ~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deS 222 (450)
...+.++..+++ ++++++++.+++.+.|++..
T Consensus 159 ~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 159 GKASRLLVRQQK------------FDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHcCC
Confidence 777777776664 79999999999999887654
No 173
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.02 E-value=0.00015 Score=69.08 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHhCCCChH-----HHHHH-HHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHH
Q 013048 85 SILDEELRVVESALRQNFKSYG-----AWHHR-KWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAAS 152 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPKny~-----AW~hR-~wvL~kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~ 152 (450)
..+++++..+.+++...++... .|++. +.+.... +.+++++.++.++++..+++ ..+++..+.+...
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 3589999999999998887543 33333 3333333 58999999999999876655 5588889999999
Q ss_pred cCcChHHHHHHHHHHH---HhccCCh----hHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCC-----
Q 013048 153 MNRSEEDELKYTEDMI---CNNFSNY----SAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDD----- 220 (450)
Q Consensus 153 L~~~~eeELe~~dk~I---~~npsNy----SAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~d----- 220 (450)
.+.++ ++++++++++ +..+.+. .++++.+.++..++. ++++++++++++.+.++.
T Consensus 168 ~~~~~-~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~------------y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 168 NGYLK-KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR------------YEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp TTCHH-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTBCSS
T ss_pred cCCHH-HHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh------------HHHHHHHHHHHHHHHHhcCcHHH
Confidence 99986 8999999999 5556543 588888888887765 799999999999876532
Q ss_pred -cchHHHHHHHHccc
Q 013048 221 -QSGWFYHLWLLDQT 234 (450)
Q Consensus 221 -eSaW~Y~r~LL~~~ 234 (450)
..+++.++.++...
T Consensus 235 ~~~~~~~lg~~y~~~ 249 (293)
T 2qfc_A 235 IGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 34455555555443
No 174
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.00 E-value=8.6e-05 Score=67.90 Aligned_cols=125 Identities=11% Similarity=-0.078 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--C
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--S 120 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~--~ 120 (450)
+|+..+.++... .+..+++..+.++...+ ++.+++.++++++.. .+..+++.-+.++...+ .
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~------------~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~ 67 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSG------------DYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQA 67 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSC
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Confidence 344445554443 44555555555444432 245555555555432 34455554444444310 1
Q ss_pred ChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH----cCcChHHHHHHHHHHHHhccC--ChhHHHHHHHHHH
Q 013048 121 SIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFS--NYSAWHNRSLLLS 186 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~----L~~~~eeELe~~dk~I~~nps--NySAW~yR~~LL~ 186 (450)
.+++++.++.++++ +.+..|+...+.++.. .+.+ .++++++.++++..++ +..+++..+.++.
T Consensus 68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 68 DYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDV-AHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCH-HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCH-HHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 34555555555432 3444455544444432 1222 2455555555555442 2445555444443
No 175
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.99 E-value=1.5e-05 Score=62.86 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=63.9
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCChh-hhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 112 KWILSKGHSSIDNELRLLDKFQKADSRNFH-AWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 112 ~wvL~kl~~~~~eEL~~~~k~L~~dpkNyh-AW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
+.++... +.++++++.++++++.+|.+.. +|..++.++..++.+. +++++++++++.+|.+..+|.+ .
T Consensus 7 a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~--------~- 75 (99)
T 2kc7_A 7 IKELINQ-GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQ-KALNNYQSAIELNPDSPALQAR--------K- 75 (99)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCTTSTHHHHH--------H-
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCcHHHHHH--------H-
Confidence 3344444 3678888888888888888887 8888888888887775 6888888888888888877754 1
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCCCcc
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQS 222 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~deS 222 (450)
.+.+.+.++.+++..+|++.+
T Consensus 76 -----------~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 -----------MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -----------HHHHHHHHHCCTTHHHHCCSS
T ss_pred -----------HHHHHHHHHHHHhccCccccc
Confidence 146667777777777776543
No 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=2.2e-05 Score=63.40 Aligned_cols=76 Identities=9% Similarity=0.009 Sum_probs=67.0
Q ss_pred hCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhH
Q 013048 100 QNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSA 177 (450)
Q Consensus 100 ~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySA 177 (450)
.+|++..+|...+.++...+ .+++++++++++++++|.+..+|.+.+.++..++.++ +++++++++++..|.+...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD-DAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhhhcCCch
Confidence 58999999999999999884 9999999999999999999999999999999999996 8999999999987755433
No 177
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=2.2e-05 Score=63.41 Aligned_cols=76 Identities=9% Similarity=0.000 Sum_probs=66.6
Q ss_pred hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 54 TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 54 ~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
.+|++..+|...+.++...+ .+++++..+++++..+|.+..+|..++.++..++ .++++++.+++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al 68 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHD------------NASRALALFEELVETDPDYVGTYYHLGKLYERLD-RTDDAIDTYAQGI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 58999999999999999887 4899999999999999999999999999999985 9999999999999
Q ss_pred HhCCCChhh
Q 013048 134 KADSRNFHA 142 (450)
Q Consensus 134 ~~dpkNyhA 142 (450)
++.|++-..
T Consensus 69 ~l~~~~~~~ 77 (100)
T 3ma5_A 69 EVAREEGTQ 77 (100)
T ss_dssp HHHHHHSCH
T ss_pred hhhhcCCch
Confidence 987754433
No 178
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.84 E-value=0.00015 Score=69.01 Aligned_cols=121 Identities=12% Similarity=-0.028 Sum_probs=98.4
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH-------hCC
Q 013048 36 HNHIYSKEAVELSTKLLETNPELY------TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR-------QNF 102 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~y------tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~-------~nP 102 (450)
..|.| ++|+..+.++|.+.++.. .+++..+.+...++ .+++++.+++++|. ..+
T Consensus 127 ~~~~~-~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g------------~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 127 KKVDY-EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG------------YLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp TSSCH-HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred cccCH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHhcccchh
Confidence 45677 899999999999755433 36888888888776 48999999999994 223
Q ss_pred CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHh
Q 013048 103 KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICN 170 (450)
Q Consensus 103 Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~ 170 (450)
....++++.+.++.+++ .++++++++++++++.+++ ..++.+.+.+...+|...+++++++++++..
T Consensus 194 ~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDS-RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 34568999999999885 9999999999999987655 5789999999999996534899999999874
No 179
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.76 E-value=0.0013 Score=59.96 Aligned_cols=161 Identities=11% Similarity=-0.003 Sum_probs=125.1
Q ss_pred hcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 013048 36 HNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL 115 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL 115 (450)
..+.+ ++|+.++.+++.. .+..+++..+.++...+ . ..++.+++.++++++ ++.+..+++..+.++
T Consensus 30 ~~~~~-~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g----~-----~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 30 SSGDY-QKAEYWAQKAAAQ--GDGDALALLAQLKIRNP----Q-----QADYPQARQLAEKAV--EAGSKSGEIVLARVL 95 (212)
T ss_dssp HHTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHTTSST----T-----SCCHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred cCCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC----C-----CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHH
Confidence 36778 8999999999875 68899999888876621 1 135899999999996 467899999999888
Q ss_pred HhC---CCChHHHHHHHHHHHHhCC--CChhhhhHHHHHHHH----cCcChHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 013048 116 SKG---HSSIDNELRLLDKFQKADS--RNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLS 186 (450)
Q Consensus 116 ~kl---~~~~~eEL~~~~k~L~~dp--kNyhAW~yR~~vl~~----L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~ 186 (450)
... ...+++++.++.++++..+ .+..|+..-+.++.. .+.+ +++++++.++++. +.+..+.+..+.++.
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD-VKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH-HHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 751 2478999999999999988 458999999998877 3334 5899999999998 777788888888776
Q ss_pred HhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 187 NLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 187 ~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
.-.. | ....-+++++.++.+|+....
T Consensus 174 ~g~g----g--~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 174 QGEK----G--FIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HCBT----T--TBCCCHHHHHHHHHHHHHHTC
T ss_pred cCCC----C--CCCCCHHHHHHHHHHHHHcCC
Confidence 4210 0 011236999999999998743
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00051 Score=56.53 Aligned_cols=133 Identities=8% Similarity=-0.112 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 60 TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY------GAWHHRKWILSKGHSSIDNELRLLDKFQ 133 (450)
Q Consensus 60 tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny------~AW~hR~wvL~kl~~~~~eEL~~~~k~L 133 (450)
.++...+.++...+ .+++++..+++++...++.. .++...+.+.... +.++++++++++++
T Consensus 10 ~~~~~l~~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLG------------NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 46667777776665 48999999999998776543 4788888888887 48999999999999
Q ss_pred HhCCCC------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC------hhHHHHHHHHHHHhhhhhccCccchhc
Q 013048 134 KADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN------YSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (450)
Q Consensus 134 ~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN------ySAW~yR~~LL~~L~~~~~~g~~~~~~ 201 (450)
.+.+.. ..++...+.+....+.+. ++++++++++...... ..++...+.+...++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------- 144 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN----------- 144 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-----------
Confidence 987654 567888888888889886 7999999999864322 2334444444444433
Q ss_pred hHHHHHHHHHHHHHhCC
Q 013048 202 VLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 202 ileeELe~v~~AI~~dP 218 (450)
++++++++.+++.+..
T Consensus 145 -~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 145 -HDQAMHFAEKHLEISR 160 (164)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6889999999887644
No 181
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.63 E-value=0.0011 Score=64.42 Aligned_cols=157 Identities=11% Similarity=-0.099 Sum_probs=116.9
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHH--
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYT-----AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGA-- 107 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~yt-----AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~A-- 107 (450)
...|++ ++|+..+.++|...|.... +++..+.++...+ .+++++..+++++...|+.-..
T Consensus 25 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 25 INDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG------------ELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHhcCcHHH
Confidence 367888 8999999999999887643 4566666666655 4789999999999876654322
Q ss_pred ----HHHHHHHHHhCCCChHHHHHHHHHHHHhCC--------CChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCC-
Q 013048 108 ----WHHRKWILSKGHSSIDNELRLLDKFQKADS--------RNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSN- 174 (450)
Q Consensus 108 ----W~hR~wvL~kl~~~~~eEL~~~~k~L~~dp--------kNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsN- 174 (450)
..+.+.++... +.+++++.++.+++...+ ....++...+.++...|.++ +++.++.+++...+..
T Consensus 92 ~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD-EAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhhccC
Confidence 45566776666 489999999999998763 23456667788888889886 7999999999987653
Q ss_pred ----hhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 175 ----YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 175 ----ySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
..++...+.+....+. ++++++.+.+++.+.+
T Consensus 170 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGD------------LDNARSQLNRLENLLG 205 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHh
Confidence 2355556666555543 6899999999987643
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.61 E-value=0.00074 Score=55.51 Aligned_cols=124 Identities=8% Similarity=-0.080 Sum_probs=95.8
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC---
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELY------TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--- 104 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~y------tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn--- 104 (450)
....|.+ ++|+..+.+++.+.++.. .+++..+.+....+ .+++++.++++++...++.
T Consensus 19 ~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 19 HYLLGNF-RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG------------EFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHhCCc
Confidence 3457888 899999999999877643 47777788777776 4899999999999876654
Q ss_pred ---hHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhcc
Q 013048 105 ---YGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (450)
Q Consensus 105 ---y~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~np 172 (450)
..++...+.++...+ .+++++++++++++..++. ..++...+.+....+.+. +++++++++++...
T Consensus 86 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD-QAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHH
Confidence 567888888888874 8999999999999874332 345666677777778775 78999999887643
No 183
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.59 E-value=0.0019 Score=65.99 Aligned_cols=162 Identities=9% Similarity=-0.030 Sum_probs=109.6
Q ss_pred HHHHHHhCCCcHHHHHH--HHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--C-Ch
Q 013048 48 STKLLETNPELYTAWNY--RKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--S-SI 122 (450)
Q Consensus 48 t~~~L~~NPd~ytAWn~--Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~--~-~~ 122 (450)
...+...-|++.+||-+ |+.-+...+ + ...+.+++.++++++..+|.+..+|..+.++..... . .-
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~-----~----~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~ 253 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHG-----D----DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD 253 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHC-----S----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCc
Confidence 34566678888888875 444333332 2 245799999999999999999999998877664211 0 11
Q ss_pred HHHHHHHH------HHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc
Q 013048 123 DNELRLLD------KFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (450)
Q Consensus 123 ~eEL~~~~------k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~ 196 (450)
...+.... .++..+|.+..++.=.+.+.-..+.++ +++...++++..||+ .-+|..+++++...+.
T Consensus 254 ~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d-~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~------ 325 (372)
T 3ly7_A 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD-ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM------ 325 (372)
T ss_dssp HHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC------
T ss_pred hhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC------
Confidence 11112111 223456665554443333443347775 899999999999974 6677778888776664
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 197 ~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
.+++++.+.+|+.++|.++ .+++..+|..+
T Consensus 326 ------~~eA~e~~~~AlrL~P~~~-t~~~~~~l~F~ 355 (372)
T 3ly7_A 326 ------NREAADAYLTAFNLRPGAN-TLYWIENGIFQ 355 (372)
T ss_dssp ------HHHHHHHHHHHHHHSCSHH-HHHHHHHSSSC
T ss_pred ------HHHHHHHHHHHHhcCCCcC-hHHHHhCceee
Confidence 7999999999999999886 56666665554
No 184
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.57 E-value=0.0015 Score=66.63 Aligned_cols=167 Identities=10% Similarity=-0.054 Sum_probs=118.6
Q ss_pred cCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 013048 37 NHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS 116 (450)
Q Consensus 37 ~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~ 116 (450)
.+++ ++|+.++.+++.. .+..++...+.++..... . +..++++++.++++++.. .+..++...+.++.
T Consensus 272 ~~d~-~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~--g-----~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 272 AKEP-LKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAE--G-----VAKNREQAISWYTKSAEQ--GDATAQANLGAIYF 339 (490)
T ss_dssp SCCH-HHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBT--T-----BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC--C-----CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Confidence 3444 6777777777654 456677777766655410 0 113578889999998876 45678888888887
Q ss_pred hCC--CChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH----cCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 117 KGH--SSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 117 kl~--~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~----L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
..+ ..++++++++.++++. .+..+|.+-+.++.. .+.+ +++++++.++++.. +..++++.+.++..-.
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~- 413 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDE-QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL- 413 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS-
T ss_pred hCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC-
Confidence 652 1567899999998887 578899999888877 4444 47999999998764 6788888888876511
Q ss_pred hhccCccchhchHHHHHHHHHHHHHhCCC---CcchHHHHH
Q 013048 191 RKVEGFVSKEKVLPDEYEFVHQAIFTDPD---DQSGWFYHL 228 (450)
Q Consensus 191 ~~~~g~~~~~~ileeELe~v~~AI~~dP~---deSaW~Y~r 228 (450)
| ...-++++++.+.+|+..+|+ +..++..+.
T Consensus 414 ----g---~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 414 ----G---VERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp ----S---SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred ----C---CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 0 112369999999999999954 777765433
No 185
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.56 E-value=0.00024 Score=69.98 Aligned_cols=132 Identities=11% Similarity=-0.092 Sum_probs=110.1
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC--hHH
Q 013048 30 QFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS--YGA 107 (450)
Q Consensus 30 ~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn--y~A 107 (450)
+.......|+| ++|.++++.++..+|++. +...++.+..+.+ .+.+++..++.++...+.. ..+
T Consensus 108 yA~~L~~~g~y-~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~------------r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 108 FAACEAAQGNY-ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE------------RWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHTCH-HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT------------CHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC------------CHHHHHHHHHHhhccCCcccHHHH
Confidence 34455578999 899999999999999999 8888998887776 4899999999887643222 348
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhC--CC-ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHH
Q 013048 108 WHHRKWILSKGHSSIDNELRLLDKFQKAD--SR-NFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAW 178 (450)
Q Consensus 108 W~hR~wvL~kl~~~~~eEL~~~~k~L~~d--pk-NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW 178 (450)
+++.+.++..++ .+++++.++++++.-. |. ...++.+++.++..+|..+ ++.+.+.+++..+|. .-++
T Consensus 174 ~~~LG~al~~LG-~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d-eA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 174 GVAHGVAAANLA-LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES-AAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCc-HHHH
Confidence 999999999995 9999999999998644 55 5569999999999999986 899999999999998 5544
No 186
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.53 E-value=0.00061 Score=66.95 Aligned_cols=148 Identities=8% Similarity=-0.103 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 61 AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF------KSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 61 AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP------Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
.+.+++......+ .+.+++.++++++...+ ....+++..+.+...++ .++.++.++.++++
T Consensus 103 ~~~~~g~~~~~~g------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~-~~~~A~~~~~~al~ 169 (378)
T 3q15_A 103 SLFFRGMYEFDQK------------EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-QTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHH
Confidence 5667887777665 48999999999997633 34567778888888884 89999999999999
Q ss_pred hCCCC-------hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccC--C----hhHHHHHHHHHHHhhhhhccCccchhc
Q 013048 135 ADSRN-------FHAWNYRRFVAASMNRSEEDELKYTEDMICNNFS--N----YSAWHNRSLLLSNLLKRKVEGFVSKEK 201 (450)
Q Consensus 135 ~dpkN-------yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~nps--N----ySAW~yR~~LL~~L~~~~~~g~~~~~~ 201 (450)
+.+++ ..++...+.+...++.++ ++++++.+++..... + ..++++.+.+...++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~----------- 237 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYD-KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD----------- 237 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-----------
Confidence 76542 346778888888889886 899999999986432 2 2466777777776654
Q ss_pred hHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHccc
Q 013048 202 VLPDEYEFVHQAIF-----TDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 202 ileeELe~v~~AI~-----~dP~deSaW~Y~r~LL~~~ 234 (450)
++++++++.+++. .+|....+++.+..++...
T Consensus 238 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 274 (378)
T 3q15_A 238 -DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence 7999999999998 7887777776666666544
No 187
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.41 E-value=0.008 Score=61.26 Aligned_cols=167 Identities=10% Similarity=-0.053 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG--- 118 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl--- 118 (450)
++|+.++.+++.. .+..++...+.++..... ...++.+++.++++++.. .+..+++..+.++...
T Consensus 240 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~--------~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLA--------GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTT--------SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC
Confidence 5666666666554 344555555555544210 013578888888888865 5677888888887765
Q ss_pred -CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcC--hHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccC
Q 013048 119 -HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRS--EEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEG 195 (450)
Q Consensus 119 -~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~--~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g 195 (450)
...+++++.++.++++. .+..++.+.+.++...+.. .+++++++.++++. .+..+|++.+.++..-. |
T Consensus 308 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~-----g 378 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGK-----G 378 (490)
T ss_dssp BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-----S
T ss_pred CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC-----C
Confidence 13788899999998876 4567888888887765421 24788888998876 67888888888876511 0
Q ss_pred ccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 196 FVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 196 ~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
...-++++++++.+|+.. ++..+++.+..++...
T Consensus 379 ---~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 379 ---VKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYG 412 (490)
T ss_dssp ---SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC
Confidence 112369999999999985 4678888877777653
No 188
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.38 E-value=0.0044 Score=63.41 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC---
Q 013048 43 EAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGH--- 119 (450)
Q Consensus 43 eAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~--- 119 (450)
++..++..++..+|. +++..+.++...+. ...+.+++.++.+++..+|....+++.-+.++....
T Consensus 163 ~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~---------~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 163 DVERICKAALNTTDI---CYVELATVYQKKQQ---------PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHHHHHHHTTTCTT---HHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHcCC---------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 344455555555665 77777777766542 236788888888888888888888777777775431
Q ss_pred CChHHHHHHHHHHHHhCCCChhhhhHHHHH-H--HHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc
Q 013048 120 SSIDNELRLLDKFQKADSRNFHAWNYRRFV-A--ASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF 196 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v-l--~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~ 196 (450)
..+++++.++.+++ |.+..++...+.+ + ...+.+ +++++++.++++. .+..|+++.+.++.. +. |
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~-~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~-G~----g- 298 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV-EQMMKYLDNGRAA--DQPRAELLLGKLYYE-GK----W- 298 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHH-CS----S-
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHc-CC----C-
Confidence 36788888888876 7888888888887 4 233444 4788888888754 477888888877652 21 1
Q ss_pred cchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 197 VSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 197 ~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
...-+.++++++.+|+ |++..+++.+..++..
T Consensus 299 --~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 299 --VPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp --SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 1122577778887777 7777777776666655
No 189
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.37 E-value=0.0051 Score=62.97 Aligned_cols=169 Identities=9% Similarity=-0.079 Sum_probs=132.7
Q ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--
Q 013048 39 IYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILS-- 116 (450)
Q Consensus 39 eyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~-- 116 (450)
.+ ++|+..+.+++..+|....+++.-+.++..... +..++.+++.++++++ |.+..+++..+.++.
T Consensus 194 ~~-~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~--------~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 194 QQ-AELLKQMEAGVSRGTVTAQRVDSVARVLGDATL--------GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG--------SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHS
T ss_pred cH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC
Confidence 56 799999999999999999999888888755421 1235899999999998 999999999999843
Q ss_pred hCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcC----cChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhh
Q 013048 117 KGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMN----RSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRK 192 (450)
Q Consensus 117 kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~----~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~ 192 (450)
...+.+++++.++.++++.. +..|+.+.+.++.. | .-..++++++.+++ +.+..|+++.+.++.. +.
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~-- 332 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-GY-- 332 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-TT--
T ss_pred CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-CC--
Confidence 22358999999999988654 88999999988873 3 12358999999999 9999999999988765 11
Q ss_pred ccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHcccc
Q 013048 193 VEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQTV 235 (450)
Q Consensus 193 ~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~~ 235 (450)
| ...-+++++.++.++.. +++..+.+.+..++....
T Consensus 333 --g---~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 333 --L---GKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp --T---SSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCT
T ss_pred --C---CCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCC
Confidence 1 11236899999999986 667888877777765543
No 190
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0017 Score=66.45 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~ 121 (450)
.+|+.+++++|.++|++..||-.+..+...+..... .+......+..++.-. .++..+|....++.-...++... +.
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~-~~~~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~-gd 292 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP-LDEKQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVK-GK 292 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhC-CC
Confidence 689999999999999999999988776653322111 1111112334444422 34466787777665444433323 58
Q ss_pred hHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCCh
Q 013048 122 IDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNY 175 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNy 175 (450)
+++++..+++++.++| +..+|...+++....|.+. ++++.+++++.++|+..
T Consensus 293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~-eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNR-EAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCCCcC
Confidence 9999999999999996 6788889999999999996 89999999999999985
No 191
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.28 E-value=0.0022 Score=55.89 Aligned_cols=129 Identities=7% Similarity=-0.197 Sum_probs=98.4
Q ss_pred HHHhhcCCCcHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh---CC
Q 013048 32 LHNHHNHIYSKEAVELSTKLLE------TNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ---NF 102 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~------~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~---nP 102 (450)
......|++ ++|+..+.+++. ..|....+++..+.+....+ .+++++..+++++.. .+
T Consensus 34 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 34 YVYAFMDRF-DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG------------NWDAARRCFLEERELLASLP 100 (203)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHcC
Confidence 344567888 899999999999 56667788888898888876 478999999999987 33
Q ss_pred ----CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCh------hhhhHHHHHHHHcCcChHHHHHHHHHHHHhcc
Q 013048 103 ----KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNF------HAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (450)
Q Consensus 103 ----Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNy------hAW~yR~~vl~~L~~~~eeELe~~dk~I~~np 172 (450)
....++...+.+....+ .+++++.++.+++.+.++.- .++...+.+....|.+. ++++++.+++..-.
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL-EAQQHWLRARDIFA 178 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH-HHHHHHHHHHHHHH
Confidence 33556777888888774 89999999999997643222 23466777777788885 79999999988654
Q ss_pred CCh
Q 013048 173 SNY 175 (450)
Q Consensus 173 sNy 175 (450)
...
T Consensus 179 ~~~ 181 (203)
T 3gw4_A 179 ELE 181 (203)
T ss_dssp HTT
T ss_pred HcC
Confidence 433
No 192
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.07 E-value=0.0096 Score=65.18 Aligned_cols=165 Identities=6% Similarity=-0.143 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHhCCC
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL-RVVESALRQNFKSYGAWHHRKWILSKGHS 120 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL-~~~e~aL~~nPKny~AW~hR~wvL~kl~~ 120 (450)
.+...+|+++|..+|.++.+|..-...+...+. ..+++ ..+++++..+|++...|..-.-+....+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~------------~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~- 392 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT------------DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT- 392 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC------------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-
Confidence 345678999999999999999988877776653 34665 8889999999999988887777777664
Q ss_pred ChHHHHHHHHHHHHhC-----------CC-----------ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh-ccCChhH
Q 013048 121 SIDNELRLLDKFQKAD-----------SR-----------NFHAWNYRRFVAASMNRSEEDELKYTEDMICN-NFSNYSA 177 (450)
Q Consensus 121 ~~~eEL~~~~k~L~~d-----------pk-----------NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~-npsNySA 177 (450)
.++++-+.+++++..- |. +-.+|..-.-+..+.+.. +.+-+.+.++++. .+.....
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l-~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL-AASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHTGGGSCTHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCCChHH
Confidence 7888888898888742 43 223677766666655544 3677777888876 4455566
Q ss_pred HHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchH-HHHHHHH
Q 013048 178 WHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGW-FYHLWLL 231 (450)
Q Consensus 178 W~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW-~Y~r~LL 231 (450)
|.....+-..++. -++.+...+..++...|++...| .|..++.
T Consensus 472 yi~~A~lE~~~~~-----------d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 472 YLENAYIEYHISK-----------DTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHTTTS-----------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 6544443333221 03566677777777777777777 4554443
No 193
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.97 E-value=0.016 Score=55.96 Aligned_cols=123 Identities=7% Similarity=-0.121 Sum_probs=93.8
Q ss_pred HhhcCCCcHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhC------
Q 013048 34 NHHNHIYSKEAVELSTKLLETNPELY------TAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQN------ 101 (450)
Q Consensus 34 ~~~~geyseeAL~lt~~~L~~NPd~y------tAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~n------ 101 (450)
....|++ ++|+..+.+++.+.|+.- .+.+..+.++...+ .+.+++..+++++...
T Consensus 63 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G------------~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 63 LHCKGEL-TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG------------FLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHhcCcH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHhccc
Confidence 3457888 899999999999876543 22455666666665 4899999999999765
Q ss_pred --CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-----hhhhhHHHHHHHHcCcChHHHHHHHHHHHHhc
Q 013048 102 --FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRN-----FHAWNYRRFVAASMNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 102 --PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkN-----yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~n 171 (450)
|....++...+.++... +.+++++.++.+++.+.++. ..++...+.+....|.+. +++.++++++...
T Consensus 130 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD-NARSQLNRLENLL 204 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH
Confidence 33445667778888777 48999999999999988763 346667777777888886 7999999998863
No 194
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.95 E-value=0.027 Score=66.34 Aligned_cols=169 Identities=8% Similarity=0.030 Sum_probs=112.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC--------
Q 013048 32 LHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-------- 103 (450)
Q Consensus 32 ~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK-------- 103 (450)
.+....|.+ ++|++.|.++ ++..+|...+.++.+++. ++++++++..+.+..+.
T Consensus 1113 KAql~~G~~-kEAIdsYiKA-----dD~say~eVa~~~~~lGk------------yEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1113 KAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGN------------WEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred HHHHhCCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhcccccccHHHH
Confidence 455566778 7888888664 888888888888888764 55666666555544422
Q ss_pred -------------------ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 104 -------------------SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 104 -------------------ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
+...|..-+-.+... +.|++++.+|.++ ..|...+.++-++|.++ ++++++
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~e-g~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q-~AIEaa 1244 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ-AAVDGA 1244 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHH-HHHHHH
Confidence 334455455555554 3778888888875 47777888888888875 788888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhhhhh---ccC---------c------cchhchHHHHHHHHHHHHHhCCCCcchHHH
Q 013048 165 EDMICNNFSNYSAWHNRSLLLSNLLKRK---VEG---------F------VSKEKVLPDEYEFVHQAIFTDPDDQSGWFY 226 (450)
Q Consensus 165 dk~I~~npsNySAW~yR~~LL~~L~~~~---~~g---------~------~~~~~ileeELe~v~~AI~~dP~deSaW~Y 226 (450)
.++ .|..+|..-.+..-..+... .-| . -.....++++|.++.+++.++|.+...|..
T Consensus 1245 rKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1245 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred HHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 887 66688875444431111100 000 0 012345799999999999999999999987
Q ss_pred HHHHHcc
Q 013048 227 HLWLLDQ 233 (450)
Q Consensus 227 ~r~LL~~ 233 (450)
+.-|+.+
T Consensus 1320 LaiLyaK 1326 (1630)
T 1xi4_A 1320 LAILYSK 1326 (1630)
T ss_pred HHHHHHh
Confidence 7777755
No 195
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.72 E-value=0.018 Score=57.30 Aligned_cols=159 Identities=5% Similarity=-0.077 Sum_probs=117.0
Q ss_pred hcCCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC------CChHH
Q 013048 36 HNHIYSKEAVELSTKLLETNP--ELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF------KSYGA 107 (450)
Q Consensus 36 ~~geyseeAL~lt~~~L~~NP--d~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP------Kny~A 107 (450)
..|.+ ++||+++.+.|..+| .+..+......++..+++ .+.+.+.++++...+| .....
T Consensus 112 ~~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r------------~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 112 ILGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN------------VSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HcCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCccccccchHHHH
Confidence 46888 899999999999997 888999988888888874 7899999999999999 34444
Q ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCC--ChhhhhHHHHHHHHcCcChHHHHHHHHHHHHh----------ccCC
Q 013048 108 WHHRKWILSKG-HSSIDNELRLLDKFQKADSR--NFHAWNYRRFVAASMNRSEEDELKYTEDMICN----------NFSN 174 (450)
Q Consensus 108 W~hR~wvL~kl-~~~~~eEL~~~~k~L~~dpk--NyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~----------npsN 174 (450)
..--.|+.... +..+++++.+|+.+++..|. +...... +...+|.++ ++-+..+.+++. +|.|
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~-eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIA-EAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHH-HHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHH-HHHHHHHHHHHhcccccccccCCCCC
Confidence 44445555432 24789999999999888875 2222222 666778885 566666666666 5888
Q ss_pred hhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHH
Q 013048 175 YSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 175 ySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~ 225 (450)
..+..+...+-..+++ ++.+++.++...+|+|+-.=-
T Consensus 255 ~~~LaN~i~l~~~lgk--------------~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--------------DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHHHTTC--------------TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCh--------------HHHHHHHHHHHhCCCChHHHH
Confidence 8887777666665542 445778889999999885443
No 196
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.62 E-value=0.049 Score=64.24 Aligned_cols=139 Identities=13% Similarity=0.032 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 013048 56 PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKA 135 (450)
Q Consensus 56 Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~ 135 (450)
.+...+|...+.++...+ .+++++..|.++ +++.+|.....++.+++ .++++++++.++.+.
T Consensus 1102 vn~p~vWsqLAKAql~~G------------~~kEAIdsYiKA-----dD~say~eVa~~~~~lG-kyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKG------------MVKEAIDSYIKA-----DDPSSYMEVVQAANTSG-NWEELVKYLQMARKK 1163 (1630)
T ss_pred cCCHHHHHHHHHHHHhCC------------CHHHHHHHHHhc-----CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 466788888888887776 378888888665 78888888888888884 888888888888777
Q ss_pred CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCc-------c-------chhc
Q 013048 136 DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGF-------V-------SKEK 201 (450)
Q Consensus 136 dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~-------~-------~~~~ 201 (450)
++. ..+=...++++.+++++. +++.+ + +..|...|...+..+...+.+..+.. - ...+
T Consensus 1164 ~~e-~~Idt~LafaYAKl~rle--ele~f---I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1164 ARE-SYVETELIFALAKTNRLA--ELEEF---I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 1235 (1630)
T ss_pred ccc-ccccHHHHHHHHhhcCHH--HHHHH---H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence 633 222234666666666542 45443 1 33355666666666666554321110 0 0112
Q ss_pred hHHHHHHHHHHHHHhCCCCcchHH
Q 013048 202 VLPDEYEFVHQAIFTDPDDQSGWF 225 (450)
Q Consensus 202 ileeELe~v~~AI~~dP~deSaW~ 225 (450)
-++++++++.+| ++..+|.
T Consensus 1236 e~q~AIEaarKA-----~n~~aWk 1254 (1630)
T 1xi4_A 1236 EYQAAVDGARKA-----NSTRTWK 1254 (1630)
T ss_pred CHHHHHHHHHHh-----CCHHHHH
Confidence 267888888877 4557775
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.026 Score=55.37 Aligned_cols=160 Identities=11% Similarity=0.006 Sum_probs=109.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHH
Q 013048 33 HNHHNHIYSKEAVELSTKLLETNPELYT-----------------AWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVE 95 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~NPd~yt-----------------AWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e 95 (450)
....+|+| ++|++.+.++|..+|+... +....+.++...+ .++++++++.
T Consensus 13 ~l~~~~~y-~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~------------~~~~a~~~~~ 79 (434)
T 4b4t_Q 13 RLVNEKQY-NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG------------AKDKLREFIP 79 (434)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT------------CHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC------------CHHHHHHHHH
Confidence 34567899 8999999999999998653 4556666666665 4889999999
Q ss_pred HHHHhCCCChHHHHHHH--HHHH---hCCCChHHHHHHHHHHHHhCCCC------hhhhhHHHHHHHHcCcChHHHHHHH
Q 013048 96 SALRQNFKSYGAWHHRK--WILS---KGHSSIDNELRLLDKFQKADSRN------FHAWNYRRFVAASMNRSEEDELKYT 164 (450)
Q Consensus 96 ~aL~~nPKny~AW~hR~--wvL~---kl~~~~~eEL~~~~k~L~~dpkN------yhAW~yR~~vl~~L~~~~eeELe~~ 164 (450)
.++...++...+-..+. -++. ...+.++.++.++.+++...++. ..++...+.+....|.+. +++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~l 158 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK-DSLALI 158 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH-HHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH-HHHHHH
Confidence 99987666544432221 1111 12257899999999998865443 235556677777778885 788998
Q ss_pred HHHHHhc------cCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC
Q 013048 165 EDMICNN------FSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP 218 (450)
Q Consensus 165 dk~I~~n------psNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP 218 (450)
.+++..- +....++...+.+...++. +.++..++++++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRN------------LAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCc------------HHHHHHHHHHHHHHhh
Confidence 8887752 2223456666666665553 6788888888776644
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.55 E-value=0.01 Score=48.16 Aligned_cols=74 Identities=11% Similarity=-0.050 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 013048 55 NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQK 134 (450)
Q Consensus 55 NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~ 134 (450)
+|++..+|..++.++..... . ....++...++++|..+|++..++...+.+..+. +.|++++.++.++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~--~-------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~-g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK--Q-------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS-FRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT--T-------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcC--C-------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 67888888888887754431 0 1236777888888888888888888888877776 478888888888888
Q ss_pred hCCC
Q 013048 135 ADSR 138 (450)
Q Consensus 135 ~dpk 138 (450)
.+|.
T Consensus 72 ~~p~ 75 (93)
T 3bee_A 72 SNDP 75 (93)
T ss_dssp CCCT
T ss_pred hCCC
Confidence 8876
No 199
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.27 E-value=0.11 Score=56.83 Aligned_cols=164 Identities=5% Similarity=-0.080 Sum_probs=114.6
Q ss_pred cCCCcHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHh-----------CCC-
Q 013048 37 NHIYSKEAV-ELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQ-----------NFK- 103 (450)
Q Consensus 37 ~geyseeAL-~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~-----------nPK- 103 (450)
.|.. ++|. +++.+++..+|++...|..-..+....+ .++++..++++++.. .|.
T Consensus 356 ~~~~-~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~------------~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 356 KNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT------------KIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HSCC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred cCcH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 4555 5787 9999999999999999988877777665 256666777777753 353
Q ss_pred ----------ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhcc
Q 013048 104 ----------SYGAWHHRKWILSKGHSSIDNELRLLDKFQKA-DSRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNF 172 (450)
Q Consensus 104 ----------ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~-dpkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~np 172 (450)
+..+|..-.-+..+.+ .++.+...+.++++. .+...+.|...+.+-...+.-.+.+...++++++..|
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~-~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQ-GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 3457887776666653 678999999999988 5556778876665555555422478899999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCC---CcchHHH
Q 013048 173 SNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPD---DQSGWFY 226 (450)
Q Consensus 173 sNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~---deSaW~Y 226 (450)
.+...|.--.-++..++. .+.+-..+.+|+...|+ ....|..
T Consensus 502 ~~~~~w~~y~~fe~~~~~------------~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNE------------ESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp TCHHHHHHHHHHHHHHTC------------HHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999888333333333322 46666777777777763 3345543
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.12 E-value=0.04 Score=44.57 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC
Q 013048 28 QSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK 103 (450)
Q Consensus 28 ~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK 103 (450)
++..+-....|..++++..++.++|.++|++..++...+.+....+ .|.+++..+++++..+|.
T Consensus 12 ~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g------------~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 12 KATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF------------RFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCC
Confidence 3444444566777899999999999999999999999999988876 489999999999999999
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.12 E-value=0.072 Score=47.78 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhC-C-CChhhhhHHHHHHHHcCcChHHHHH
Q 013048 87 LDEELRVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKAD-S-RNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 87 ~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~--~~~~eEL~~~~k~L~~d-p-kNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
+...-+.+...+..+|.+.++...-.|+|-+.. ..+++.+.+++.+++.+ | ++-.+++|.+...-+++.|. ++++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~-~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE-KALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH-HHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH-HHHH
Confidence 344445555566677777788877788887763 13557888888888877 6 56777888887777778775 7888
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhhh
Q 013048 163 YTEDMICNNFSNYSAWHNRSLLLSNLLK 190 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~yR~~LL~~L~~ 190 (450)
|++++++.+|.|..|-.-+..+-..+.+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 8888888888888887777766666654
No 202
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.07 Score=47.83 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHH
Q 013048 85 SILDEELRVVESALRQN-F-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVA 150 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~n-P-Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl 150 (450)
..+++.+.+++.+++.+ | +.-.++++......+++ .|++++.+++++|+++|.|-.|-.-+..+-
T Consensus 49 ~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~-~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 49 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK-EYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46789999999999999 7 67899999998888884 999999999999999999999966555443
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.59 E-value=0.12 Score=51.39 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhCCCC
Q 013048 44 AVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNF--KSYGAWHHRKWILSKGHSS 121 (450)
Q Consensus 44 AL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nP--Kny~AW~hR~wvL~kl~~~ 121 (450)
++..+++++...+....+...-+.++...+ .++++|+++.+.|..+| .+..+..-...++-+++ +
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g------------~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-r 151 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILG------------DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-N 151 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHT------------CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcC------------CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC-C
Confidence 455566666665566677778888877776 48999999999999997 88888888888888874 8
Q ss_pred hHHHHHHHHHHHHhCCC----ChhhhhH--HHHHHHHcC--cChHHHHHHHHHHHHhccCChh--HHHHHHHHHHHhhhh
Q 013048 122 IDNELRLLDKFQKADSR----NFHAWNY--RRFVAASMN--RSEEDELKYTEDMICNNFSNYS--AWHNRSLLLSNLLKR 191 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpk----NyhAW~y--R~~vl~~L~--~~~eeELe~~dk~I~~npsNyS--AW~yR~~LL~~L~~~ 191 (450)
.+.+.+.++++.+.+|. +-....+ -+|+--..| .+. +++.+++++....|...+ .... +...+++
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q-~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~- 226 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETAT-SNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN- 226 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTT-HHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC-
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC-
Confidence 99999999999999983 2233333 244444444 565 789999999888776222 2111 3334433
Q ss_pred hccCccchhchHHHHHHHHHHHHHh----------CCCCcchHHHH
Q 013048 192 KVEGFVSKEKVLPDEYEFVHQAIFT----------DPDDQSGWFYH 227 (450)
Q Consensus 192 ~~~g~~~~~~ileeELe~v~~AI~~----------dP~deSaW~Y~ 227 (450)
+.++-+.++.++.. +|+|..+-...
T Consensus 227 -----------~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 227 -----------IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp -----------HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 67777777766666 47787776443
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.54 E-value=0.34 Score=48.04 Aligned_cols=125 Identities=5% Similarity=-0.068 Sum_probs=96.5
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhC----CCC
Q 013048 48 STKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK--SYGAWHHRKWILSKG----HSS 121 (450)
Q Consensus 48 t~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK--ny~AW~hR~wvL~kl----~~~ 121 (450)
-..+-..+|++..++.+.+.+....-.....++.. ...+.++....+++++++|+ +-.+|...+-+..+. .+.
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~A-l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSAL-PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHH-HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 34455689999999999998887653211223332 35678999999999999999 555999999999885 357
Q ss_pred hHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHc-CcChHHHHHHHHHHHHhccCC
Q 013048 122 IDNELRLLDKFQKADSR-NFHAWNYRRFVAASM-NRSEEDELKYTEDMICNNFSN 174 (450)
Q Consensus 122 ~~eEL~~~~k~L~~dpk-NyhAW~yR~~vl~~L-~~~~eeELe~~dk~I~~npsN 174 (450)
.+++-++++++|+++|. |..+..+-+..+... +.+. +...+.++++..+|+.
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~-~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA-GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH-HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH-HHHHHHHHHHcCCCCC
Confidence 89999999999999995 588888777766553 5554 6788999999988873
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.42 E-value=0.11 Score=53.58 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHH
Q 013048 22 EKLRVLQSQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRV 93 (450)
Q Consensus 22 ~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~ 93 (450)
..-+..+..+......|.| ++|+.++.++|.+ +|+-.+..+.-+.++..++ .|++++.+
T Consensus 296 ~~~~~~le~~~~~~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g------------~~~eA~~~ 362 (433)
T 3qww_A 296 RYARNVIEEFRRAKHYKSP-SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ------------DWEGALKY 362 (433)
T ss_dssp HHHHHHHHHHHHHTTTSCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT------------CHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCH-HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc------------CHHHHHHH
Confidence 3444566667777788999 8999999999985 4444577778888888776 47888888
Q ss_pred HHHHHHh--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 94 VESALRQ--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 94 ~e~aL~~--------nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
++++|.+ +|.-....+.-+.++... +.+++++.++.+++++..
T Consensus 363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q-g~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL-ENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHH
Confidence 8888853 556666777778888777 489999999999998754
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.32 E-value=0.38 Score=40.68 Aligned_cols=117 Identities=9% Similarity=-0.085 Sum_probs=87.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH----cCcChH
Q 013048 83 LKSILDEELRVVESALRQNFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEE 158 (450)
Q Consensus 83 ~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~----L~~~~e 158 (450)
+..++.+++.++.++...+..... .+.++... ..++++++++.++.+. .+..|...-+.++.. ...+ +
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g-~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC----LSLVSNSQ-INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDL-R 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTT-SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH-H
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcC-CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccH-H
Confidence 346789999999999988744333 55555444 3678899999999887 678899999988876 3333 5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhC
Q 013048 159 DELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTD 217 (450)
Q Consensus 159 eELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~d 217 (450)
++++++.++++. .+..|.++.+.++..=. + ...-++++++++.+|....
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~-----g---~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAGK-----G---VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTS-----S---SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCCC-----C---CCcCHHHHHHHHHHHHHCC
Confidence 899999999986 77889988888876510 1 1123699999999999873
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.23 Score=48.50 Aligned_cols=168 Identities=8% Similarity=-0.041 Sum_probs=107.8
Q ss_pred hhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCC------hHHH
Q 013048 35 HHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKS------YGAW 108 (450)
Q Consensus 35 ~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKn------y~AW 108 (450)
...|.+ ++|++.+.+++.+.+....+-..+ .+...++.... . ...+++++.++..++...++. ..++
T Consensus 66 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 66 VTMGAK-DKLREFIPHSTEYMMQFAKSKTVK-VLKTLIEKFEQ-V----PDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHTCH-HHHHHHHHHTHHHHHTSCHHHHHH-HHHHHHHHHCS-C----CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHCCCH-HHHHHHHHHHHHHHHHccchHHHH-HHHHHHHHHHh-C----CCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 456888 789999999998877665432221 11111111000 1 135788889998888654433 3455
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhC------CCChhhhhHHHHHHHHcCcChHHHHHHHHHHHHhccCChhHHHHHH
Q 013048 109 HHRKWILSKGHSSIDNELRLLDKFQKAD------SRNFHAWNYRRFVAASMNRSEEDELKYTEDMICNNFSNYSAWHNRS 182 (450)
Q Consensus 109 ~hR~wvL~kl~~~~~eEL~~~~k~L~~d------pkNyhAW~yR~~vl~~L~~~~eeELe~~dk~I~~npsNySAW~yR~ 182 (450)
...+-++... +.|++++.++.+++..- +.-..++...+.+...++.+. ++..++++++...+..+......+
T Consensus 139 ~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 139 IKLATLHYQK-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA-KSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHhhcCCCchHHHH
Confidence 6666666666 48999999999988753 222346777778888888886 799999999988776665555555
Q ss_pred HHHHHhhhhhccCccchhchHHHHHHHHHHHHHh
Q 013048 183 LLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFT 216 (450)
Q Consensus 183 ~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~ 216 (450)
.+...++... ....-++++..++..++.+
T Consensus 217 ~~~~~~g~~~-----~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILH-----CEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHT-----TSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHhHHHHHHHHHHHHHH
Confidence 5555554321 1123367777788777754
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.93 E-value=0.18 Score=52.91 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHH
Q 013048 20 KAEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEEL 91 (450)
Q Consensus 20 ~~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL 91 (450)
.....+.+.+.+...+.+|.| ++|+.++.++|.+ +|+..+..+.-+.++..+++ |++++
T Consensus 305 ~l~~a~~~le~a~~~~~qg~~-~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~------------~~eA~ 371 (490)
T 3n71_A 305 MIQFSKDTLEKIDKARSEGLY-HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA------------YEEAS 371 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC------------HHHHH
Confidence 344455666777778899999 8999999999986 44556777888888887763 78888
Q ss_pred HHHHHHHHh--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 013048 92 RVVESALRQ--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADS 137 (450)
Q Consensus 92 ~~~e~aL~~--------nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dp 137 (450)
.+++++|.+ +|.-..+.+.-+.++... +.+++++.++.+++++..
T Consensus 372 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA-GHIEVGHGMICKAYAILL 424 (490)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
Confidence 888888753 455555666677777776 489999999999988753
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.56 E-value=0.17 Score=50.22 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhC
Q 013048 42 KEAVELSTKLLETNPE--LYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFK-SYGAWHHRKWILSKG 118 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd--~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPK-ny~AW~hR~wvL~kl 118 (450)
.++....+++|+++|+ +-.+|...+.+....- .......+++-..++++|.++|. +..+.+.-...+...
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP-------p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP-------ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC-------TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC-------CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Confidence 4778899999999999 5569999998887751 11123568999999999999995 599999988888764
Q ss_pred CCChHHHHHHHHHHHHhCCCC
Q 013048 119 HSSIDNELRLLDKFQKADSRN 139 (450)
Q Consensus 119 ~~~~~eEL~~~~k~L~~dpkN 139 (450)
.++++...+++++++..+|+-
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGG
T ss_pred cCCHHHHHHHHHHHHcCCCCC
Confidence 357899999999999999874
No 210
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=94.43 E-value=0.051 Score=56.79 Aligned_cols=73 Identities=11% Similarity=0.177 Sum_probs=57.4
Q ss_pred HHHcCcChHHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCC-----CCcchH
Q 013048 150 AASMNRSEEDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDP-----DDQSGW 224 (450)
Q Consensus 150 l~~L~~~~eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP-----~deSaW 224 (450)
..+.|.++ +.+.++++++..++-....|...+.+..+..+ +.+.+.++.+-..+.+.| ++...|
T Consensus 217 Yek~G~~e-Eai~lLe~aL~le~ah~~~ftel~il~~ky~p----------~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 217 YQDRGYFE-ELITMLEAALGLERAHMGMFTELAILYSKFKP----------QKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHTTCHH-HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH----------HHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred HHHCCCHH-HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44556664 78899999999999999999999888887653 346777888887888888 888888
Q ss_pred HHHHHHHcc
Q 013048 225 FYHLWLLDQ 233 (450)
Q Consensus 225 ~Y~r~LL~~ 233 (450)
.-..+|+..
T Consensus 286 ~e~~~ly~~ 294 (449)
T 1b89_A 286 AELVFLYDK 294 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777754
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.97 E-value=1.4 Score=37.13 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhC---
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWILSKG--- 118 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL~kl--- 118 (450)
++|+.++.++...+..... .+.++.... .+++++.+++++... .+..+.+.-+.++...
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~------------~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQI------------NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTTS------------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcCC------------CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 6899999999988755444 443333221 356799999999986 6889999999999873
Q ss_pred CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHH----cCcChHHHHHHHHHHHHhc
Q 013048 119 HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAAS----MNRSEEDELKYTEDMICNN 171 (450)
Q Consensus 119 ~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~----L~~~~eeELe~~dk~I~~n 171 (450)
..++++++.++.++.+. .+..|...-+.++.. ...+ +++++++.++++..
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE-KQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHHCC
Confidence 25789999999999886 678898888888876 3334 58999999998863
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.14 E-value=0.57 Score=37.69 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=58.4
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCCh
Q 013048 33 HNHHNHIYSKEAVELSTKLLETN-------PELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSY 105 (450)
Q Consensus 33 ~~~~~geyseeAL~lt~~~L~~N-------Pd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny 105 (450)
.....|.| ..|+..+.++|... +....++++-+.++.+++ .+++++..+++++..+|.+.
T Consensus 14 ~~~~~~~y-~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g------------~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 14 VAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG------------DLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHccch-HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHhcCCCCH
Confidence 34567899 89999999999864 456788888888888887 48999999999999999999
Q ss_pred HHHHHHHHHH
Q 013048 106 GAWHHRKWIL 115 (450)
Q Consensus 106 ~AW~hR~wvL 115 (450)
.+.+.++++-
T Consensus 81 ~~~~n~~~~~ 90 (104)
T 2v5f_A 81 RANGNLKYFE 90 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhHHHHH
Confidence 9987776443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.73 E-value=0.45 Score=48.84 Aligned_cols=99 Identities=6% Similarity=-0.049 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHH
Q 013048 24 LRVLQSQFLHNHHNHIYSKEAVELSTKLLET--------NPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVE 95 (450)
Q Consensus 24 ~~~l~~~~~~~~~~geyseeAL~lt~~~L~~--------NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e 95 (450)
.+.+...+-..+.+|.| ++|+.++.++|.+ +|...++.+.-+.++..++ .+++++.+++
T Consensus 287 ~~~ll~~ie~~~~~g~~-~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g------------~~~eA~~~~~ 353 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG------------LLEEALFYGT 353 (429)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc------------cHHHHHHHHH
Confidence 34555556667788999 8999999999975 3344566677777777665 4888888888
Q ss_pred HHHHh--------CCCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 013048 96 SALRQ--------NFKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKAD 136 (450)
Q Consensus 96 ~aL~~--------nPKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~d 136 (450)
++|.+ +|.--...+.-+.++... +.+++++.++.+++++-
T Consensus 354 ~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~-g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 354 RTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHcCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 88853 344445566666777666 48999999999998864
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.29 E-value=6.1 Score=40.84 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHH-
Q 013048 21 AEKLRVLQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALR- 99 (450)
Q Consensus 21 ~~k~~~l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~- 99 (450)
....|.+++.++...-.|++ +++-.+++++|...| ++.+|..--......+. .++.+ ...++.++.
T Consensus 11 i~~aR~vyer~l~~~P~~~~-e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~----~~~~i-------~~~fe~al~~ 77 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDY-RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQ----KKFKL-------YEVYEFTLGQ 77 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC--------CT-------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCc----hHHHH-------HHHHHHHHHH
Confidence 34557777777777777888 889999999999888 78899854433333321 11111 123333332
Q ss_pred --hCCCChHHHHHHHHHHHhCC---CChHHHHHHHHHHHHh---------------------------------------
Q 013048 100 --QNFKSYGAWHHRKWILSKGH---SSIDNELRLLDKFQKA--------------------------------------- 135 (450)
Q Consensus 100 --~nPKny~AW~hR~wvL~kl~---~~~~eEL~~~~k~L~~--------------------------------------- 135 (450)
.+|.++..|.--.-.+.... +.++..-..|+++|..
T Consensus 78 vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar 157 (493)
T 2uy1_A 78 FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSF 157 (493)
T ss_dssp STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHH
Confidence 25566666643322211100 0122333334444332
Q ss_pred ---------CCC-ChhhhhHHHHHHHHcCc---Ch-----HHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCcc
Q 013048 136 ---------DSR-NFHAWNYRRFVAASMNR---SE-----EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFV 197 (450)
Q Consensus 136 ---------dpk-NyhAW~yR~~vl~~L~~---~~-----eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~ 197 (450)
-++ +...|.. ++--..+. .. ..-...+++++...|.....|..-...+...+.
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~------- 228 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ------- 228 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-------
Confidence 111 2223321 11111111 11 122457888888889998888866555443322
Q ss_pred chhchHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 013048 198 SKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWL 230 (450)
Q Consensus 198 ~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~L 230 (450)
.+++.+.+.+|+.. |.+...|++...+
T Consensus 229 -----~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 229 -----KEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp -----HHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 57888999999999 9999888764433
No 215
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=91.65 E-value=0.29 Score=51.09 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhCCCCcchHHHHHHHHcc
Q 013048 202 VLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQ 233 (450)
Q Consensus 202 ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~ 233 (450)
.+++++.++.+++.+++.+...|..+.-|+.+
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999888777755
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.52 E-value=1.8 Score=34.64 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH
Q 013048 86 ILDEELRVVESALRQN-------FKSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~n-------PKny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v 149 (450)
.|..++.+++.++... +....++.+-+.++.+++ .+++++.+++++++++|.+..+...++++
T Consensus 20 ~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 20 DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 5889999999998753 345667777777777774 78888888888888888887776666633
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=89.05 E-value=15 Score=37.79 Aligned_cols=124 Identities=8% Similarity=-0.021 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHHHhCCCChHHHHHHHHHH------
Q 013048 42 KEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESALRQNFKSYGAWHHRKWIL------ 115 (450)
Q Consensus 42 eeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL~~nPKny~AW~hR~wvL------ 115 (450)
.++..+++++|...|....+|..-...+...+ ..+++...+++++.. |++...|..-.-..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~------------~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~ 262 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG------------QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVY 262 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHH
Confidence 35678999999999999999997766665554 368889999999999 99988886432221
Q ss_pred ----HhC-----------------------------CCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 116 ----SKG-----------------------------HSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 116 ----~kl-----------------------------~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
... .+.++++...++++ ...+..++.|...+.+-..++.-.+.+..
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence 000 01244566677777 43334677776655544444432246888
Q ss_pred HHHHHHHhccCChhHHH
Q 013048 163 YTEDMICNNFSNYSAWH 179 (450)
Q Consensus 163 ~~dk~I~~npsNySAW~ 179 (450)
.++.+++..|++...|.
T Consensus 342 ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCCCCHHHHH
Confidence 88889988887765554
No 218
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.56 E-value=6.1 Score=34.09 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH
Q 013048 86 ILDEELRVVESALRQN-F-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~n-P-Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v 149 (450)
...+-+.+++.+++.+ | .....-++...-..++ +.|++++.+++.+|+++|.|-.|-.-+..+
T Consensus 53 d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl-g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 53 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455666666666655 4 3444444444444455 377777777777777777777775555443
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=85.04 E-value=1.7 Score=44.77 Aligned_cols=83 Identities=22% Similarity=0.168 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHhC-----CCCh---hhhhHHHHHHHHcCcChHHHHHHHHHHHHh--------ccCChhHHHHHHH
Q 013048 120 SSIDNELRLLDKFQKAD-----SRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICN--------NFSNYSAWHNRSL 183 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~d-----pkNy---hAW~yR~~vl~~L~~~~eeELe~~dk~I~~--------npsNySAW~yR~~ 183 (450)
+.|++++.++.++|++. |.+. .+.++-+.++..+|.++ +++.++.+++.+ ||.=-.++++.+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~-eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE-GALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57899999999999964 3443 45667777888889886 788999988865 5566677888888
Q ss_pred HHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 184 LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
++...++ +++++.++.+|+.
T Consensus 391 ~~~~qg~------------~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLEN------------KAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTC------------HHHHHHHHHHHHH
T ss_pred HHHhccC------------HHHHHHHHHHHHH
Confidence 8887765 6888888888875
No 220
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.48 E-value=14 Score=32.21 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHH
Q 013048 86 ILDEELRVVESALRQNF-KSYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFV 149 (450)
Q Consensus 86 ~~~eEL~~~e~aL~~nP-Kny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~v 149 (450)
...+.+.+++.+++.+| ..-..++|...-..+++ .|++++.+++.+|++.|.|-.|=.-+..+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg-dY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG-EYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45677777777777776 34566666666666663 77788888888888888777774444433
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.53 E-value=6.4 Score=33.93 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhC-C-CChhhhhHHHHHHHHcCcChHHHHHHHHHH
Q 013048 92 RVVESALRQNFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKAD-S-RNFHAWNYRRFVAASMNRSEEDELKYTEDM 167 (450)
Q Consensus 92 ~~~e~aL~~nPKny~AW~hR~wvL~kl~--~~~~eEL~~~~k~L~~d-p-kNyhAW~yR~~vl~~L~~~~eeELe~~dk~ 167 (450)
+-+...+..++-+..+=..-.|.|-+.. ....+.+.++..++..+ | ++-.+-.|-+...-+++.|. +++.+++.+
T Consensus 22 ~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~-~A~~~~~~l 100 (126)
T 1nzn_A 22 KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE-KALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Confidence 4445555667777777777788887653 12346889999988887 5 67778888888888889996 899999999
Q ss_pred HHhccCChhHHHHHHHHHHHh
Q 013048 168 ICNNFSNYSAWHNRSLLLSNL 188 (450)
Q Consensus 168 I~~npsNySAW~yR~~LL~~L 188 (450)
++.+|.|..|..-+..+-.++
T Consensus 101 L~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 101 LQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999998876665554433
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.32 E-value=30 Score=30.46 Aligned_cols=63 Identities=6% Similarity=-0.045 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHH
Q 013048 85 SILDEELRVVESALRQNFK-SYGAWHHRKWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRF 148 (450)
Q Consensus 85 ~~~~eEL~~~e~aL~~nPK-ny~AW~hR~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~ 148 (450)
....+-+.+++.+++.+|. .-..-++...-..++ +.|++++.+++.+|+++|.|-+|=.-+..
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl-~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3456777777777777764 233333333333345 47777888888888888877777444433
No 223
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=74.62 E-value=5.8 Score=41.34 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHhCCC-----C---hhhhhHHHHHHHHcCcChHHHHHHHHHHHHh--------ccCChhHHHHHHH
Q 013048 120 SSIDNELRLLDKFQKADSR-----N---FHAWNYRRFVAASMNRSEEDELKYTEDMICN--------NFSNYSAWHNRSL 183 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~dpk-----N---yhAW~yR~~vl~~L~~~~eeELe~~dk~I~~--------npsNySAW~yR~~ 183 (450)
+.|++++.++.++|++..+ + ..+.+.-+.++...|.++ +++.++.+++.+ ||.=-.+.++.+.
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~-eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYE-EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5899999999999997533 2 245666677777888886 788888888864 3444566777788
Q ss_pred HHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 184 LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
++...++ +++++.++.+|+.
T Consensus 402 ~~~~~G~------------~~eA~~~~~~Al~ 421 (490)
T 3n71_A 402 TNWHAGH------------IEVGHGMICKAYA 421 (490)
T ss_dssp HHHHTTC------------HHHHHHHHHHHHH
T ss_pred HHHHCCC------------HHHHHHHHHHHHH
Confidence 8777765 5666666666663
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.45 E-value=41 Score=29.58 Aligned_cols=101 Identities=11% Similarity=0.164 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhC---CCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCC-CChhhhhHHHHHHHHcCcChHHHH
Q 013048 88 DEELRVVESALRQN---FKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADS-RNFHAWNYRRFVAASMNRSEEDEL 161 (450)
Q Consensus 88 ~eEL~~~e~aL~~n---PKny~AW~hR~wvL~kl~--~~~~eEL~~~~k~L~~dp-kNyhAW~yR~~vl~~L~~~~eeEL 161 (450)
.+||..++.--... .-+.++=..-.|+|-+.. ....+.+.+++..+..+| +.-.+-+|-+.-.-+++.|. +++
T Consensus 19 ~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~-~Ar 97 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS-MAK 97 (144)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHH-HHH
Confidence 45555555444322 344555555567777653 234588999999999888 44566666677777788886 899
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhh
Q 013048 162 KYTEDMICNNFSNYSAWHNRSLLLSNLL 189 (450)
Q Consensus 162 e~~dk~I~~npsNySAW~yR~~LL~~L~ 189 (450)
.|++.+++..|.|..|-.-+..+-.++.
T Consensus 98 ~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~ 125 (144)
T 1y8m_A 98 RYVDTLFEHERNNKQVGALKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999988666555554443
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.35 E-value=10 Score=33.15 Aligned_cols=98 Identities=11% Similarity=0.159 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHh----CCCChHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCC-CChhhhhHHHHHHHHcCcChHHH
Q 013048 88 DEELRVVESALRQ----NFKSYGAWHHRKWILSKGH--SSIDNELRLLDKFQKADS-RNFHAWNYRRFVAASMNRSEEDE 160 (450)
Q Consensus 88 ~eEL~~~e~aL~~----nPKny~AW~hR~wvL~kl~--~~~~eEL~~~~k~L~~dp-kNyhAW~yR~~vl~~L~~~~eeE 160 (450)
.+||..+++-... +|. .++=..-.|.|-+.. ....+.+.++..+++.+| +--.++.|-+.-.-++|.|. ++
T Consensus 20 ~eeL~~l~~qy~~E~~~~vs-~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~-~A 97 (134)
T 3o48_A 20 PQQLEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS-MA 97 (134)
T ss_dssp HHHHHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHH-HH
Confidence 4555555554432 233 333334467776653 134588999999999888 45688999999899999996 89
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHH
Q 013048 161 LKYTEDMICNNFSNYSAWHNRSLLLSN 187 (450)
Q Consensus 161 Le~~dk~I~~npsNySAW~yR~~LL~~ 187 (450)
+.+++.+++..|.|..|-.-+..+=.+
T Consensus 98 r~y~d~lL~~eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 98 KRYVDTLFEHERNNKQVGALKSMVEDK 124 (134)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 999999999999998876555444333
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=67.10 E-value=7.8 Score=39.50 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHhC-----CCCh---hhhhHHHHHHHHcCcChHHHHHHHHHHHHh--------ccCChhHHHHHHH
Q 013048 120 SSIDNELRLLDKFQKAD-----SRNF---HAWNYRRFVAASMNRSEEDELKYTEDMICN--------NFSNYSAWHNRSL 183 (450)
Q Consensus 120 ~~~~eEL~~~~k~L~~d-----pkNy---hAW~yR~~vl~~L~~~~eeELe~~dk~I~~--------npsNySAW~yR~~ 183 (450)
+.|++++++|.+++++. |.|. .+.+.-+.++...|.++ +++.++.+++.. ||.=-..++..+.
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~-eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE-EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 57899999999999864 3333 34556666677778886 799999988864 3334455666666
Q ss_pred HHHHhhhhhccCccchhchHHHHHHHHHHHHH
Q 013048 184 LLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIF 215 (450)
Q Consensus 184 LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~ 215 (450)
++...++ +++++.++.+|+.
T Consensus 380 ~~~~~g~------------~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 380 LQLHQGM------------FPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHTTC------------HHHHHHHHHHHHH
T ss_pred HHHhcCC------------HHHHHHHHHHHHH
Confidence 6666654 6888888888774
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=39.49 E-value=1.7e+02 Score=32.15 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=69.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcc-hhhhhHHHHHHHHHHHHHh-CCCChHH---HHHH-
Q 013048 38 HIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPD-SLKSILDEELRVVESALRQ-NFKSYGA---WHHR- 111 (450)
Q Consensus 38 geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe-~~~~~~~eEL~~~e~aL~~-nPKny~A---W~hR- 111 (450)
|.+-+.++++++++...+|..... +..-.+..+.. ..+.| ...+.+.++++.....+.. .++...+ ..+.
T Consensus 262 ~~~~~~a~~~le~L~~~~p~~~~~--~~~~~i~~~~~--~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 337 (754)
T 4gns_B 262 PSLVDFTIDYLKGLTKKDPIHDIY--YKTAMITILDH--IETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMS 337 (754)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHTT--CGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCchhHH--HHHHHHHHHHH--hhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcch
Confidence 344467888999999999987542 22222221110 00000 0113344455444333332 2232211 1111
Q ss_pred -------HHHHHhCCCChHHHHHHHHHHHHhCCCChhhhhHHHHHHHHcCcChHHHHH
Q 013048 112 -------KWILSKGHSSIDNELRLLDKFQKADSRNFHAWNYRRFVAASMNRSEEDELK 162 (450)
Q Consensus 112 -------~wvL~kl~~~~~eEL~~~~k~L~~dpkNyhAW~yR~~vl~~L~~~~eeELe 162 (450)
.+++.+ ++++-||++-.++...-|..|.+|.+-.-+.-.++.++ .+|-
T Consensus 338 ~LL~~Qa~FLl~K--~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e-~ALL 392 (754)
T 4gns_B 338 DLLNIQTNFLLNR--GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYE-KALF 392 (754)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred HHHHHHHHHHhcc--CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHH-HHHH
Confidence 223332 58999999999999999999999999999999999986 5553
No 228
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=33.93 E-value=58 Score=30.10 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=41.4
Q ss_pred ccceEEeecccccccc--ccceEEecccCcCccceeeeCCCCCCccceeEEEeccCCCCCCCCCccccEEEecCcccccc
Q 013048 278 TFPLVLYFNQAVEGVN--SSTITVDSELNTNKDLVWKPLSSCNSKAAQVWVTQLNLPDGNTHSSKVFPVEVSLGHSQGII 355 (450)
Q Consensus 278 ~~~~~~~f~~~v~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
-.|+++.|++||.--. ...+++++.-. ....|.=++.. +. -|.-+- -..+-..+.|++.+ .|+-
T Consensus 115 g~Pv~v~F~~pV~draave~ai~Vtt~p~--v~G~~~W~~d~--~v--~~RP~~-----yW~~gT~Vtv~~~l---~Gv~ 180 (198)
T 4hu2_A 115 GEPVAIRFDENIADRGAAEKAIKITTNPP--VEGAFYWLNNR--EV--RWRPEH-----FWKPGTAVDVAVNT---YGVD 180 (198)
T ss_dssp TCCEEEEESSCCSCHHHHHHTEEEEEESC--CCEEEEESSSS--EE--EEEESS-----CCCTTEEEEEEECC---BTCB
T ss_pred CceEEEECCCCCCChHHhhcccEEecCCC--CcEEEEECCCC--EE--EEeccc-----cCCCCCEEEEEEEC---CCee
Confidence 3699999999995210 23444443322 22223222210 01 222111 11233466666654 5887
Q ss_pred cCCCcccCCCcceEEEE
Q 013048 356 SSSGFHYSNPFCFAFRV 372 (450)
Q Consensus 356 ~~~g~~~~~p~~~~~~~ 372 (450)
-.+|-|=..-....|||
T Consensus 181 ~g~g~yG~~d~~~~FtI 197 (198)
T 4hu2_A 181 LGEGMFGEDNVQTHFTI 197 (198)
T ss_dssp CSTTEEESSCEEEEEEE
T ss_pred cCCceEEecCcEEEEEe
Confidence 78887665666667765
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=25.82 E-value=3.6e+02 Score=26.49 Aligned_cols=55 Identities=9% Similarity=-0.096 Sum_probs=44.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHHHH
Q 013048 31 FLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVESAL 98 (450)
Q Consensus 31 ~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~aL 98 (450)
+-.....|.+ .+++.....++..+|-+-.+|...-.++...++ ..+++..|+.+-
T Consensus 178 ~~~~l~~g~~-~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr------------~~~Al~~y~~~r 232 (388)
T 2ff4_A 178 AEAEIACGRA-SAVIAELEALTFEHPYREPLWTQLITAYYLSDR------------QSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC------------HHHHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHH
Confidence 3345567888 899999999999999999999888888887764 577787777653
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=23.28 E-value=1.2e+02 Score=27.24 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHh---CCCc------HHHHHHHHHHHHhhhcCCCCCcchhhhhHHHHHHHHHH
Q 013048 26 VLQSQFLHNHHNHIYSKEAVELSTKLLET---NPEL------YTAWNYRKLAVQHKLTENDSDPDSLKSILDEELRVVES 96 (450)
Q Consensus 26 ~l~~~~~~~~~~geyseeAL~lt~~~L~~---NPd~------ytAWn~Rr~iL~~l~~~~~~dpe~~~~~~~eEL~~~e~ 96 (450)
.+++++......|.| +.|.-+.+.++.+ ||+. |++-.+.+.++...+ .|.+++..+.+
T Consensus 22 ~l~dqik~L~d~~LY-~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~------------eyrrA~~~y~q 88 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLH-SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK------------EYRNAVSKYTM 88 (167)
T ss_dssp CHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc------------HHHHHHHHHHH
Confidence 466888888899999 6776666665554 4552 557777777777665 48899999998
Q ss_pred HHH
Q 013048 97 ALR 99 (450)
Q Consensus 97 aL~ 99 (450)
+|.
T Consensus 89 ALq 91 (167)
T 3ffl_A 89 ALQ 91 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 231
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=20.23 E-value=3.2e+02 Score=28.30 Aligned_cols=65 Identities=11% Similarity=-0.075 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHhhhhhccCccchhchHHHHHHHHHHHHHhCCCCcchHHHHHHHHccc
Q 013048 158 EDELKYTEDMICNNFSNYSAWHNRSLLLSNLLKRKVEGFVSKEKVLPDEYEFVHQAIFTDPDDQSGWFYHLWLLDQT 234 (450)
Q Consensus 158 eeELe~~dk~I~~npsNySAW~yR~~LL~~L~~~~~~g~~~~~~ileeELe~v~~AI~~dP~deSaW~Y~r~LL~~~ 234 (450)
..+..||.+++..+|++-.++|+.+.|...-+. .-+++-+|.+++....-.+.++.....++...
T Consensus 169 ~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~------------~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGD------------HLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC------------HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc------------cHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 468889999999999999999999888765332 35566677777776666777777777666653
No 232
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.05 E-value=1.9e+02 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhhc
Q 013048 27 LQSQFLHNHHNHIYSKEAVELSTKLLETNPELYTAWNYRKLAVQHKLT 74 (450)
Q Consensus 27 l~~~~~~~~~~geyseeAL~lt~~~L~~NPd~ytAWn~Rr~iL~~l~~ 74 (450)
+.....+....|+| .-|+++.+.++..+|++..|=..+..++.+++.
T Consensus 452 ~~~~a~~~~~~g~~-~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 452 LLEQARASYARGEY-RWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44445556678999 899999999999999999999999999999974
Done!