Your job contains 1 sequence.
>013049
METVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLL
STTESTDNRIEPDLEVEEQRAQIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREY
FRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQSKLRSESSGEQNKDVANSMTS
PLELFPTELHRFNGKNYRVWAQQIELLLKQLKVAYVLTDPCPIVTLCPQASSEEVTRVKA
AERKWLNDNNICRHHILNFLSDHLYYQYSKRTSSAKELWEELKLVYLDEEFGTKRSQVKK
YIEFQMFDEKSVFEQALELNKIADSIVAAGMMIYENFHVSVILSKLPLSWKDFCIKLMRM
EYLTFTMLMDHIKAEEESRSHNKQEEPSKFVELSPAVNFGPRMREMSKKRRESEMDSKTV
VCYNCRKKGHVAKHCHNKRLHQEINDNCPC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013049
(450 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2134618 - symbol:AT4G00980 species:3702 "Arabi... 892 2.2e-89 1
TAIR|locus:2123416 - symbol:KELP species:3702 "Arabidopsi... 421 1.8e-39 1
UNIPROTKB|G4NEJ8 - symbol:MGG_00780 "Uncharacterized prot... 148 1.1e-09 1
ASPGD|ASPL0000000236 - symbol:AN5806 species:162425 "Emer... 135 2.9e-08 1
TAIR|locus:2184747 - symbol:KIWI species:3702 "Arabidopsi... 134 3.7e-08 1
UNIPROTKB|Q5ZK63 - symbol:SUB1 "Activated RNA polymerase ... 133 4.8e-08 1
WB|WBGene00011743 - symbol:T13F2.2 species:6239 "Caenorha... 132 6.2e-08 1
UNIPROTKB|A7YWC6 - symbol:SUB1 "Uncharacterized protein" ... 131 7.9e-08 1
UNIPROTKB|J9NRQ9 - symbol:SUB1 "Uncharacterized protein" ... 131 7.9e-08 1
UNIPROTKB|E2R6X3 - symbol:SUB1 "Uncharacterized protein" ... 130 1.0e-07 1
UNIPROTKB|F6Y016 - symbol:LOC479283 "Uncharacterized prot... 130 1.0e-07 1
UNIPROTKB|J9P938 - symbol:J9P938 "Uncharacterized protein... 130 1.0e-07 1
UNIPROTKB|P53999 - symbol:SUB1 "Activated RNA polymerase ... 130 1.0e-07 1
UNIPROTKB|I3LQI3 - symbol:SUB1 "Uncharacterized protein" ... 130 1.0e-07 1
RGD|621582 - symbol:Sub1 "SUB1 homolog (S. cerevisiae)" s... 130 1.0e-07 1
MGI|MGI:104811 - symbol:Sub1 "SUB1 homolog (S. cerevisiae... 129 1.3e-07 1
POMBASE|SPAC16A10.02 - symbol:sub1 "transcription coactiv... 129 1.3e-07 1
ZFIN|ZDB-GENE-050522-151 - symbol:sub1a "SUB1 homolog a (... 124 4.5e-07 1
ZFIN|ZDB-GENE-040718-209 - symbol:sub1b "SUB1 homolog b (... 116 3.3e-06 1
FB|FBgn0015299 - symbol:Ssb-c31a "Single stranded-binding... 114 5.4e-06 1
TAIR|locus:2019469 - symbol:AT1G64490 "AT1G64490" species... 114 5.4e-06 1
TAIR|locus:2165780 - symbol:AT5G42060 species:3702 "Arabi... 108 2.4e-05 1
DICTYBASE|DDB_G0270054 - symbol:DDB_G0270054 "ssDNA-bindi... 106 4.0e-05 1
DICTYBASE|DDB_G0275335 - symbol:DDB_G0275335 "ssDNA-bindi... 104 6.5e-05 1
UNIPROTKB|F1NKA2 - symbol:LOC777191 "Uncharacterized prot... 103 8.3e-05 1
TAIR|locus:2184732 - symbol:AT5G09240 species:3702 "Arabi... 102 0.00011 1
UNIPROTKB|F1S1P4 - symbol:F1S1P4 "Uncharacterized protein... 98 0.00029 1
>TAIR|locus:2134618 [details] [associations]
symbol:AT4G00980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR003173 InterPro:IPR009057
Pfam:PF02229 PROSITE:PS50158 SMART:SM00343 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.60 GO:GO:0003713 InterPro:IPR014876 Pfam:PF08766
EMBL:BT005886 EMBL:AK117983 IPI:IPI00544798 RefSeq:NP_567205.2
UniGene:At.34490 ProteinModelPortal:Q8GXX5 SMR:Q8GXX5 IntAct:Q8GXX5
EnsemblPlants:AT4G00980.1 GeneID:827935 KEGG:ath:AT4G00980
TAIR:At4g00980 HOGENOM:HOG000215958 InParanoid:Q8GXX5
PhylomeDB:Q8GXX5 ProtClustDB:CLSN2690681 Genevestigator:Q8GXX5
Uniprot:Q8GXX5
Length = 488
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 192/447 (42%), Positives = 277/447 (61%)
Query: 1 METVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLL 60
ME V +I +TV +L SDM++MTEFK+R++AS +LGIDLS NHK+ +R V+E FLL
Sbjct: 12 MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71
Query: 61 STT-ES-TDNRIEPDLEVEEQRAQIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIR 118
ST E+ + P E + + + + ICKLS K+ +Q ++G+ F+SI
Sbjct: 72 STPGEALVPETVAP--AKNETVSVAAASVGGEDERFICKLSEKQNATVQRYRGQPFLSIG 129
Query: 119 EYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQSKLRSESSGEQNKDVANSM 178
+ GK +G L++ QW K+ AI++ + + QSKL+SE++ + A
Sbjct: 130 S--QEHGKAF---RGAHLSTNQWSVIKKNFAAIEDGIKQCQSKLKSEAARNGDTSEAVDK 184
Query: 179 TSPLELFPTELHRFNGKNYRVWAQQIELLLKQLKVAYVLTDPCPIV--TLCPQASSEEVT 236
S ++ RF+GK+Y WA Q+EL LKQLK+ YVL++PCP + + P+ + E+T
Sbjct: 185 DSSHGFSVIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREIT 244
Query: 237 RVKAAERKWLNDNNICRHHILNFLSDHLYYQYSKRTSSAKELWEELKLVYLDEEFGTKRS 296
R A +KWL D+ +C H++N LSDHLY +YS++ AKELW+ELK VY +E +KRS
Sbjct: 245 RADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRS 304
Query: 297 QVKKYIEFQMFDEKSVFEQALELNKIADSIVAAGMMIYENFHVSVILSKLPLSWKDFCIK 356
QV+KYIEF+M +E+ + EQ NKIADSIV+AGM + E FHVS I+SK P SW+ FC +
Sbjct: 305 QVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTR 364
Query: 357 LMRMEYLTFTMLMDHIKAEEES-RSHNK--QEEP---SKFVELSPAVNFGPR-MREMSKK 409
LM EYL MLM+ +KAEEE R+ K P S +E +P++ R + + K
Sbjct: 365 LMEEEYLPVWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVGWK 424
Query: 410 RRESEMDSKTV-VCYNCRKKGHVAKHC 435
R+E E D + + VC NC +KGH+AKHC
Sbjct: 425 RKEPERDERVIIVCDNCGRKGHLAKHC 451
>TAIR|locus:2123416 [details] [associations]
symbol:KELP species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003173 InterPro:IPR009044
InterPro:IPR009057 Pfam:PF02229 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 GO:GO:0003713 InterPro:IPR014876 Pfam:PF08766
EMBL:AL161518 EMBL:AF080118 EMBL:AL049525 EMBL:AF053303
EMBL:AY085896 EMBL:BT005847 IPI:IPI00522129 PIR:T52114
RefSeq:NP_001078372.1 RefSeq:NP_192830.1 UniGene:At.21693
ProteinModelPortal:O65155 SMR:O65155 IntAct:O65155 PaxDb:O65155
PRIDE:O65155 DNASU:826690 EnsemblPlants:AT4G10920.1
EnsemblPlants:AT4G10920.2 GeneID:826690 KEGG:ath:AT4G10920
GeneFarm:2402 TAIR:At4g10920 eggNOG:NOG299238 HOGENOM:HOG000238208
InParanoid:O65155 OMA:LVSIREY PhylomeDB:O65155
ProtClustDB:CLSN2686069 Genevestigator:O65155 GermOnline:AT4G10920
Gene3D:2.30.31.10 InterPro:IPR017415 PIRSF:PIRSF038156
SUPFAM:SSF54447 Uniprot:O65155
Length = 165
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 85/165 (51%), Positives = 120/165 (72%)
Query: 1 METVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLL 60
ME + +I +TV+E+L SDM+E+TEFKVR ASE+L IDLS+ +HK F+R VVE FL
Sbjct: 1 MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60
Query: 61 S--TTESTDNRIEPDLEVEEQRAQIG-KRINDDGDSIICKLSNKRTVAIQEFKGRAFVSI 117
E ++++ + E ++ G K +DDGD IIC+LS+KR V IQEFKG++ VSI
Sbjct: 61 EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120
Query: 118 REYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQSKL 162
REY+++DGK +PT+KGI+LT EQW F K++PAI+ AV KM+S++
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
>UNIPROTKB|G4NEJ8 [details] [associations]
symbol:MGG_00780 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0006355 EMBL:CM001235 GO:GO:0003677 GO:GO:0003713
Gene3D:2.30.31.10 SUPFAM:SSF54447 RefSeq:XP_003718212.1 PDB:4AGH
PDBsum:4AGH ProteinModelPortal:G4NEJ8 EnsemblFungi:MGG_00780T0
GeneID:2674441 KEGG:mgr:MGG_00780 Uniprot:G4NEJ8
Length = 162
Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 84 GKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRA 143
G +++ +G+ ++S+KR V I +FK F++IREY+ G++ P KGI LT +Q+ A
Sbjct: 42 GSQVDAEGNPF-WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTA 100
Query: 144 FSKSLPAIDEAVVKMQSKLRSESSG 168
F K++PAI+ + + +S G
Sbjct: 101 FLKAIPAINAELRSRGHDITDDSDG 125
>ASPGD|ASPL0000000236 [details] [associations]
symbol:AN5806 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] InterPro:IPR003173
InterPro:IPR009044 Pfam:PF02229 GO:GO:0006355 GO:GO:0003677
EMBL:BN001301 GO:GO:0003713 EMBL:AACD01000100 eggNOG:NOG299238
Gene3D:2.30.31.10 SUPFAM:SSF54447 OrthoDB:EOG4WQ4C5
RefSeq:XP_663410.1 ProteinModelPortal:Q5B0X4
EnsemblFungi:CADANIAT00007241 GeneID:2871080 KEGG:ani:AN5806.2
HOGENOM:HOG000213471 OMA:LVNIREY Uniprot:Q5B0X4
Length = 168
Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 42 LSDANHKRFIRGVVESFLLSTTESTDNRIE-PDLE-VEEQRAQIGKRINDDGDSIICKLS 99
++ + KR V S + S +R PD+ + R ++ R D I ++S
Sbjct: 1 MASQSRKRVSEVVDHSLVDKPPLSKKSRTNAPDVAGFDNSRPELVARKEDSNGDIYWEIS 60
Query: 100 NKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAID 152
R V I F+G+ V+IREY+ +DG+ +P KGI+L +Q+ + LP I+
Sbjct: 61 KMRRVTISSFRGKTMVNIREYYEKDGEELPGKKGISLPIDQFSSLVTLLPEIE 113
>TAIR|locus:2184747 [details] [associations]
symbol:KIWI species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 EMBL:AL391712 GO:GO:0003713
eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447 EMBL:AF053302
EMBL:BT004745 IPI:IPI00531083 PIR:T52113 RefSeq:NP_196487.1
UniGene:At.10039 ProteinModelPortal:O65154 SMR:O65154 IntAct:O65154
STRING:O65154 PaxDb:O65154 PRIDE:O65154 EnsemblPlants:AT5G09250.1
GeneID:830784 KEGG:ath:AT5G09250 TAIR:At5g09250
HOGENOM:HOG000239157 InParanoid:O65154 OMA:WIDIREF PhylomeDB:O65154
ProtClustDB:CLSN2916867 Genevestigator:O65154 GermOnline:AT5G09250
Uniprot:O65154
Length = 107
Score = 134 (52.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 23/69 (33%), Positives = 43/69 (62%)
Query: 88 NDDGDSII-CKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSK 146
+D D I+ C +S R V+++ + G+ ++ IRE++ +DGK +P KGI+L+ +QW
Sbjct: 35 SDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRN 94
Query: 147 SLPAIDEAV 155
I++A+
Sbjct: 95 HAEDIEKAL 103
>UNIPROTKB|Q5ZK63 [details] [associations]
symbol:SUB1 "Activated RNA polymerase II transcriptional
coactivator p15" species:9031 "Gallus gallus" [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003713 Gene3D:2.30.31.10 SUPFAM:SSF54447
HOGENOM:HOG000239157 EMBL:AJ720221 IPI:IPI00570734
RefSeq:NP_001008479.1 UniGene:Gga.11479 HSSP:P53999
ProteinModelPortal:Q5ZK63 SMR:Q5ZK63 STRING:Q5ZK63 PRIDE:Q5ZK63
GeneID:427425 KEGG:gga:427425 CTD:10923 eggNOG:NOG280527
HOVERGEN:HBG028243 NextBio:20828685 Uniprot:Q5ZK63
Length = 126
Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 77 EEQRAQIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGIA 135
E + + + + D + ++ R V++++FKG+ + IREY+ ++G++ P KGI+
Sbjct: 44 ESSKGAASSKQSSNRDENMFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGIS 103
Query: 136 LTSEQWRAFSKSLPAIDEAVVKM 158
L EQW + + ID+AV K+
Sbjct: 104 LNPEQWNQLKEQISDIDDAVRKL 126
>WB|WBGene00011743 [details] [associations]
symbol:T13F2.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR003173
InterPro:IPR009044 Pfam:PF02229 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003713 EMBL:Z81122
eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
HOGENOM:HOG000239157 GeneTree:ENSGT00390000008802 PIR:T24876
RefSeq:NP_501750.1 ProteinModelPortal:Q94045 SMR:Q94045
STRING:Q94045 PaxDb:Q94045 EnsemblMetazoa:T13F2.2.1
EnsemblMetazoa:T13F2.2.2 GeneID:188475 KEGG:cel:CELE_T13F2.2
UCSC:T13F2.2.1 CTD:188475 WormBase:T13F2.2 InParanoid:Q94045
OMA:LSTEQWE NextBio:938940 Uniprot:Q94045
Length = 124
Score = 132 (51.5 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 73 DLEVEEQRAQIGKRIND-DGDSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDG-KLVP 129
+++ + ++ R+ D DG+ + ++ N R + +FKG+ +V+IREY+ RD K++P
Sbjct: 40 EVKKAKNEEEVSGRLKDSDGNEMF-EIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMP 98
Query: 130 TAKGIALTSEQWRAFSKSLPAIDE 153
+ KGI+L+ QW +P ID+
Sbjct: 99 SRKGISLSKAQWANLKDLIPEIDK 122
>UNIPROTKB|A7YWC6 [details] [associations]
symbol:SUB1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0005730 GO:GO:0006357 GO:GO:0005667 GO:GO:0003713
GO:GO:0003697 eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
HOGENOM:HOG000239157 GeneTree:ENSGT00390000008802 CTD:10923
HOVERGEN:HBG028243 OMA:QWNQLKD OrthoDB:EOG4NS3D2 EMBL:DAAA02050690
EMBL:BC134490 IPI:IPI00695331 RefSeq:NP_001098877.1
UniGene:Bt.23529 SMR:A7YWC6 STRING:A7YWC6
Ensembl:ENSBTAT00000029284 GeneID:533984 KEGG:bta:533984
InParanoid:A7YWC6 NextBio:20876218 Uniprot:A7YWC6
Length = 127
Score = 131 (51.2 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 44 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDAEGEMKPGRKGI 103
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 104 SLNPEQWSQLKEQISDIDDAVRKL 127
>UNIPROTKB|J9NRQ9 [details] [associations]
symbol:SUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 OMA:IFKITRT EMBL:AAEX03016493
Ensembl:ENSCAFT00000037797 Uniprot:J9NRQ9
Length = 125
Score = 131 (51.2 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 28/97 (28%), Positives = 55/97 (56%)
Query: 69 RIEPDLEVEEQRAQ------IGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFR 122
++ P+ V++QR + K+ + D + ++ R +++++FKG+ + IREY+
Sbjct: 29 QVTPEKPVKKQRGEKSRALSSSKQSSSSRDDNMFQIGKMRYLSVRDFKGKVLIDIREYWM 88
Query: 123 R-DGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKM 158
+G++ P KGI+L EQW + + ID+AV K+
Sbjct: 89 DPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 125
>UNIPROTKB|E2R6X3 [details] [associations]
symbol:SUB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0006355 GO:GO:0003677 GO:GO:0003713 Gene3D:2.30.31.10
SUPFAM:SSF54447 RefSeq:XP_536425.3 Ensembl:ENSCAFT00000029964
GeneID:479283 KEGG:cfa:479283 NextBio:20854490 Uniprot:E2R6X3
Length = 127
Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRR-DGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 44 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 103
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 104 SLNPEQWSQLKEQISDIDDAVRKL 127
>UNIPROTKB|F6Y016 [details] [associations]
symbol:LOC479283 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 OMA:QWNQLKD Ensembl:ENSCAFT00000029964
EMBL:AAEX03003186 EMBL:AAEX03003187 Uniprot:F6Y016
Length = 144
Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRR-DGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 61 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 120
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 121 SLNPEQWSQLKEQISDIDDAVRKL 144
>UNIPROTKB|J9P938 [details] [associations]
symbol:J9P938 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 EMBL:AAEX03002980
Ensembl:ENSCAFT00000026464 OMA:VDIREHY Uniprot:J9P938
Length = 132
Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRR-DGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 49 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 108
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 109 SLNPEQWSQLKEQISDIDDAVRKL 132
>UNIPROTKB|P53999 [details] [associations]
symbol:SUB1 "Activated RNA polymerase II transcriptional
coactivator p15" species:9606 "Homo sapiens" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0005730 GO:GO:0006357 GO:GO:0006351 GO:GO:0005667
GO:GO:0003713 GO:GO:0003697 eggNOG:NOG299238 Gene3D:2.30.31.10
SUPFAM:SSF54447 CTD:10923 HOVERGEN:HBG028243 EMBL:X79805
EMBL:U12979 EMBL:BC009610 EMBL:BC010537 EMBL:BC018189 EMBL:BC022339
IPI:IPI00221222 PIR:A54670 RefSeq:NP_006704.3 UniGene:Hs.229641
PDB:1PCF PDB:2C62 PDB:2PHE PDBsum:1PCF PDBsum:2C62 PDBsum:2PHE
ProteinModelPortal:P53999 SMR:P53999 DIP:DIP-29044N IntAct:P53999
MINT:MINT-138673 STRING:P53999 PhosphoSite:P53999 DMDM:1709514
PaxDb:P53999 PeptideAtlas:P53999 PRIDE:P53999
Ensembl:ENST00000265073 Ensembl:ENST00000502897
Ensembl:ENST00000506237 Ensembl:ENST00000512913
Ensembl:ENST00000515355 GeneID:10923 KEGG:hsa:10923 UCSC:uc003jhs.2
GeneCards:GC05P032622 HGNC:HGNC:19985 HPA:CAB015351 HPA:HPA001311
MIM:600503 neXtProt:NX_P53999 PharmGKB:PA142670858
InParanoid:P53999 OMA:QWNQLKD OrthoDB:EOG4NS3D2 PhylomeDB:P53999
ChiTaRS:SUB1 EvolutionaryTrace:P53999 GenomeRNAi:10923
NextBio:41499 ArrayExpress:P53999 Bgee:P53999 CleanEx:HS_SUB1
Genevestigator:P53999 GermOnline:ENSG00000113387 Uniprot:P53999
Length = 127
Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRR-DGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 44 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 103
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 104 SLNPEQWSQLKEQISDIDDAVRKL 127
>UNIPROTKB|I3LQI3 [details] [associations]
symbol:SUB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
GO:GO:0005730 GO:GO:0006357 GO:GO:0005667 GO:GO:0003713
GO:GO:0003697 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 OMA:QWNQLKD EMBL:FP085384
Ensembl:ENSSSCT00000023763 Uniprot:I3LQI3
Length = 134
Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRR-DGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 51 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 110
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 111 SLNPEQWSQLKEQISDIDDAVRKL 134
>RGD|621582 [details] [associations]
symbol:Sub1 "SUB1 homolog (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding"
evidence=IEA;ISO] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR003173 InterPro:IPR009044
Pfam:PF02229 RGD:621582 GO:GO:0005634 GO:GO:0005730 GO:GO:0006357
GO:GO:0006351 GO:GO:0005667 GO:GO:0003713 GO:GO:0003697
eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
HOGENOM:HOG000239157 CTD:10923 HOVERGEN:HBG028243 OMA:QWNQLKD
OrthoDB:EOG4NS3D2 EMBL:BC088346 EMBL:K02816 IPI:IPI00208123
PIR:A23063 RefSeq:NP_001009618.1 UniGene:Rn.231328 UniGene:Rn.8706
ProteinModelPortal:Q63396 SMR:Q63396 IntAct:Q63396
MINT:MINT-4598677 STRING:Q63396 PRIDE:Q63396
Ensembl:ENSRNOT00000015443 GeneID:192269 KEGG:rno:192269
InParanoid:Q63396 NextBio:622964 Genevestigator:Q63396
GermOnline:ENSRNOG00000011558 Uniprot:Q63396
Length = 127
Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRAQIG-KRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 44 ESSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGI 103
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 104 SLNMEQWSQLKEQISDIDDAVRKL 127
>MGI|MGI:104811 [details] [associations]
symbol:Sub1 "SUB1 homolog (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 MGI:MGI:104811
GO:GO:0005730 GO:GO:0006357 GO:GO:0006351 GO:GO:0005667
GO:GO:0003713 GO:GO:0003697 eggNOG:NOG299238 Gene3D:2.30.31.10
SUPFAM:SSF54447 HOGENOM:HOG000239157 GeneTree:ENSGT00390000008802
CTD:10923 HOVERGEN:HBG028243 OMA:QWNQLKD OrthoDB:EOG4NS3D2
ChiTaRS:SUB1 EMBL:J03750 EMBL:AK048371 EMBL:AK049260 EMBL:AK132021
EMBL:AK146335 EMBL:AK151734 EMBL:AK154114 EMBL:BC010967
IPI:IPI00225633 PIR:A28084 RefSeq:NP_035424.1 UniGene:Mm.41746
ProteinModelPortal:P11031 SMR:P11031 STRING:P11031
PhosphoSite:P11031 PaxDb:P11031 PRIDE:P11031
Ensembl:ENSMUST00000022816 Ensembl:ENSMUST00000110504 GeneID:20024
KEGG:mmu:20024 UCSC:uc007vhj.1 InParanoid:P11031 NextBio:297547
Bgee:P11031 CleanEx:MM_SUB1 Genevestigator:P11031
GermOnline:ENSMUSG00000022205 Uniprot:P11031
Length = 127
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 77 EEQRAQIG-KRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGI 134
E RA K+ + D + ++ R V++++FKG+ + IREY+ +G++ P KGI
Sbjct: 44 ETSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGI 103
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQW + + ID+AV K+
Sbjct: 104 SLNMEQWSQLKEQISDIDDAVRKL 127
>POMBASE|SPAC16A10.02 [details] [associations]
symbol:sub1 "transcription coactivator PC4"
species:4896 "Schizosaccharomyces pombe" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0060261 "positive regulation of
transcription initiation from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
PomBase:SPAC16A10.02 GO:GO:0005634 EMBL:CU329670 GO:GO:0006351
GO:GO:0003713 GO:GO:0003690 GO:GO:0003697 GO:GO:0060261
eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
OrthoDB:EOG4WQ4C5 PIR:T37767 RefSeq:NP_594042.1
ProteinModelPortal:P87294 STRING:P87294 EnsemblFungi:SPAC16A10.02.1
GeneID:2542309 KEGG:spo:SPAC16A10.02 NextBio:20803370
Uniprot:P87294
Length = 136
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 99 SNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKM 158
+ K+ + + EF+G +V IREY+ +DG ++P KGIAL +W+ + + +D+++ +
Sbjct: 35 TEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSLGLV 94
Query: 159 QSKLRSESS----GEQNKDVAN 176
S SE E N + N
Sbjct: 95 DSGSDSEDEIKEKAENNASLKN 116
>ZFIN|ZDB-GENE-050522-151 [details] [associations]
symbol:sub1a "SUB1 homolog a (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
ZFIN:ZDB-GENE-050522-151 GO:GO:0006355 GO:GO:0003677 GO:GO:0003713
eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
HOGENOM:HOG000239157 GeneTree:ENSGT00390000008802
HOVERGEN:HBG028243 OMA:QWNQLKD OrthoDB:EOG4NS3D2 EMBL:BX664706
EMBL:BC095096 IPI:IPI00503863 RefSeq:NP_001018376.1
UniGene:Dr.84297 SMR:Q504B1 STRING:Q504B1
Ensembl:ENSDART00000075485 Ensembl:ENSDART00000143848 GeneID:553561
KEGG:dre:553561 CTD:553561 InParanoid:Q504B1 NextBio:20880301
Uniprot:Q504B1
Length = 123
Score = 124 (48.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 97 KLSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAV 155
++ R V++++FKG+ + IREY+ ++G++ P KGI+L EQW + + ID+AV
Sbjct: 61 QIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISEIDDAV 120
>ZFIN|ZDB-GENE-040718-209 [details] [associations]
symbol:sub1b "SUB1 homolog b (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
ZFIN:ZDB-GENE-040718-209 GO:GO:0006355 GO:GO:0003677 GO:GO:0003713
eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
HOGENOM:HOG000239157 EMBL:BX470118 GeneTree:ENSGT00390000008802
HOVERGEN:HBG028243 OMA:LDQWKIL OrthoDB:EOG4NS3D2 EMBL:BC076294
IPI:IPI00505413 RefSeq:NP_001002505.1 UniGene:Dr.13991 SMR:Q6DGP6
Ensembl:ENSDART00000011229 GeneID:436778 KEGG:dre:436778 CTD:436778
InParanoid:Q6DGP6 NextBio:20831213 Uniprot:Q6DGP6
Length = 124
Score = 116 (45.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 97 KLSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAV 155
++ R V++++FKG+ + IREY+ + G++ P KGI+L EQW + + ID+A+
Sbjct: 62 QIGKLRYVSVRDFKGKVLIDIREYWMDQAGEMKPGKKGISLNPEQWSQLKEQMSDIDDAI 121
>FB|FBgn0015299 [details] [associations]
symbol:Ssb-c31a "Single stranded-binding protein c31A"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS;IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005667 "transcription factor complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISS]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 GO:GO:0005634
GO:GO:0045892 EMBL:AE014134 GO:GO:0006351 GO:GO:0003713
GO:GO:0003697 eggNOG:NOG299238 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 EMBL:U18971 EMBL:BT023261 PIR:S66164
RefSeq:NP_477136.1 UniGene:Dm.2642 ProteinModelPortal:Q9VLR5
SMR:Q9VLR5 MINT:MINT-1003322 STRING:Q9VLR5 PaxDb:Q9VLR5
PRIDE:Q9VLR5 EnsemblMetazoa:FBtr0079590 GeneID:34120
KEGG:dme:Dmel_CG8396 CTD:34120 FlyBase:FBgn0015299
InParanoid:Q9VLR5 OMA:LDQWKIL OrthoDB:EOG4DZ0BW PhylomeDB:Q9VLR5
GenomeRNAi:34120 NextBio:786953 Bgee:Q9VLR5 GermOnline:CG8396
Uniprot:Q9VLR5
Length = 110
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 67 DNRIEPDLEVEEQRAQIGKRINDDGDSIICK--LSNKRTVAIQEFKGRAFVSIREYFRRD 124
D+RI+P + ++ D G++ L R V I EF+GR V IRE++ +
Sbjct: 18 DDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYDKG 77
Query: 125 GKLVPTAKGIALTSEQWRAFSKSLPAIDEAV 155
G+++P KGI+L+ QW+ + + A+
Sbjct: 78 GQILPGKKGISLSLIQWKKLLEVAEEVTRAI 108
>TAIR|locus:2019469 [details] [associations]
symbol:AT1G64490 "AT1G64490" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR009057 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003677 EMBL:AC009519
Gene3D:1.10.10.60 InterPro:IPR014876 Pfam:PF08766
HOGENOM:HOG000152477 ProtClustDB:CLSN2686431 EMBL:AY084856
EMBL:BT024574 EMBL:AK175745 IPI:IPI00542298 RefSeq:NP_564835.1
UniGene:At.35993 ProteinModelPortal:Q9SGW6 SMR:Q9SGW6 STRING:Q9SGW6
PaxDb:Q9SGW6 PRIDE:Q9SGW6 EnsemblPlants:AT1G64490.1 GeneID:842757
KEGG:ath:AT1G64490 TAIR:At1g64490 eggNOG:NOG304476 OMA:EKAIMTI
PhylomeDB:Q9SGW6 ArrayExpress:Q9SGW6 Genevestigator:Q9SGW6
Uniprot:Q9SGW6
Length = 124
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 8 RIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLLSTTESTD 67
+I++TV ++LK S + E+TE K R EAS L +DLS +K +R V+SF+ + D
Sbjct: 18 KIKETVKKILKRSSLLEITEIKAREEASSELNLDLSRDPYKIIVREAVDSFIEKAIMTID 77
Query: 68 NRI 70
+
Sbjct: 78 TEM 80
>TAIR|locus:2165780 [details] [associations]
symbol:AT5G42060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016592 "mediator complex"
evidence=IDA] InterPro:IPR009057 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 Gene3D:1.10.10.60
EMBL:AB017067 GO:GO:0016592 InterPro:IPR014876 Pfam:PF08766
EMBL:AY072311 EMBL:AY114547 IPI:IPI00541220 RefSeq:NP_199021.1
UniGene:At.30192 ProteinModelPortal:Q9FHX8 SMR:Q9FHX8 IntAct:Q9FHX8
STRING:Q9FHX8 PaxDb:Q9FHX8 PRIDE:Q9FHX8 DNASU:834211
EnsemblPlants:AT5G42060.1 GeneID:834211 KEGG:ath:AT5G42060
TAIR:At5g42060 eggNOG:NOG274548 HOGENOM:HOG000152477 OMA:SNLYKIT
PhylomeDB:Q9FHX8 ProtClustDB:CLSN2686431 Genevestigator:Q9FHX8
Uniprot:Q9FHX8
Length = 92
Score = 108 (43.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/63 (34%), Positives = 42/63 (66%)
Query: 8 RIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLLSTTESTD 67
+I++TV ++L++S++ ++TE K R EAS +L +DLS +K ++ VE+FL +
Sbjct: 18 KIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFLEEAVKLIG 77
Query: 68 NRI 70
N++
Sbjct: 78 NKL 80
>DICTYBASE|DDB_G0270054 [details] [associations]
symbol:DDB_G0270054 "ssDNA-binding transcriptional
regulator" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005667 "transcription factor complex" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
dictyBase:DDB_G0270054 EMBL:AAFI02000005 GO:GO:0006357
GO:GO:0005667 GO:GO:0003713 GO:GO:0003697 eggNOG:NOG299238
Gene3D:2.30.31.10 InterPro:IPR017415 PIRSF:PIRSF038156
SUPFAM:SSF54447 ProtClustDB:CLSZ2430970 RefSeq:XP_646504.1
ProteinModelPortal:Q55CH7 EnsemblProtists:DDB0220621 GeneID:8617464
KEGG:ddi:DDB_G0270054 InParanoid:Q55CH7 OMA:IFKITRT Uniprot:Q55CH7
Length = 129
Score = 106 (42.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 29/97 (29%), Positives = 45/97 (46%)
Query: 46 NHKRF-IRGVVESFLLSTTESTDNRIEPDLEVEEQRAQIGKRINDDGDSIICKLSNKRTV 104
N K+ + VVE ++ T N + + D LS+KR +
Sbjct: 15 NQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSF-NLSDKRKI 73
Query: 105 AIQEFKGRAFVSIREYFR-RDGKLVPTAKGIALTSEQ 140
+ FKG + IRE+F + G+L P++KGI+LT EQ
Sbjct: 74 SYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQ 110
>DICTYBASE|DDB_G0275335 [details] [associations]
symbol:DDB_G0275335 "ssDNA-binding transcriptional
regulator" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005667 "transcription factor complex" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003173
InterPro:IPR009044 Pfam:PF02229 dictyBase:DDB_G0275335
GO:GO:0006357 EMBL:AAFI02000013 GO:GO:0005667 GO:GO:0003713
GO:GO:0003697 eggNOG:NOG299238 Gene3D:2.30.31.10 InterPro:IPR017415
PIRSF:PIRSF038156 SUPFAM:SSF54447 RefSeq:XP_643662.1
ProteinModelPortal:Q553Q8 EnsemblProtists:DDB0216410 GeneID:8619927
KEGG:ddi:DDB_G0275335 InParanoid:Q553Q8 OMA:KEMRSKS
ProtClustDB:CLSZ2430970 Uniprot:Q553Q8
Length = 141
Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 98 LSNKRTVAIQEFKGRAFVSIREYFR-RDGKLVPTAKGIALTSEQW 141
LS+KR ++ FKG + IRE+F + G+L P++KGI+LT EQ+
Sbjct: 79 LSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQF 123
>UNIPROTKB|F1NKA2 [details] [associations]
symbol:LOC777191 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 IPI:IPI00570734 OMA:QWNQLKD
EMBL:AADN02060500 EMBL:AADN02060501 EMBL:AADN02060502
Ensembl:ENSGALT00000039243 Uniprot:F1NKA2
Length = 124
Score = 103 (41.3 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 77 EEQRAQIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIAL 136
E + + + + D + ++ R V++++FKG+ + ++G++ P KGI+L
Sbjct: 49 ESSKGAASSKQSSNRDENMFQIGKMRYVSVRDFKGKVLID------KEGEMKPGRKGISL 102
Query: 137 TSEQWRAFSKSLPAIDEAVVKM 158
EQW + + ID+AV K+
Sbjct: 103 NPEQWNQLKEQISDIDDAVRKL 124
>TAIR|locus:2184732 [details] [associations]
symbol:AT5G09240 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009408 "response to heat"
evidence=RCA] InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229
EMBL:CP002688 GO:GO:0006355 GO:GO:0003677 GO:GO:0003713
Gene3D:2.30.31.10 SUPFAM:SSF54447 UniGene:At.10037 UniGene:At.70268
IPI:IPI00519075 RefSeq:NP_850798.2 UniGene:At.5322
ProteinModelPortal:F4KCI8 EnsemblPlants:AT5G09240.2 GeneID:830783
KEGG:ath:AT5G09240 OMA:RNHEEDI PhylomeDB:F4KCI8 Uniprot:F4KCI8
Length = 138
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 67 DNRIEPDLEVEEQRA---QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRR 123
D R D + E A ++ K ++ D IC L R V ++ GR +++IR++F +
Sbjct: 11 DVRASDDRDESETHAPPKKVAKPADEIEDIFICNLDKNRRVFVRNCNGRIWIAIRQFFVK 70
Query: 124 DGKLVP--TAKGIALTSEQ 140
DG +P + +GI+L+ EQ
Sbjct: 71 DGITLPCNSKQGISLSLEQ 89
>UNIPROTKB|F1S1P4 [details] [associations]
symbol:F1S1P4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003173 InterPro:IPR009044 Pfam:PF02229 GO:GO:0006355
GO:GO:0003677 GO:GO:0003713 Gene3D:2.30.31.10 SUPFAM:SSF54447
GeneTree:ENSGT00390000008802 EMBL:CU914264 EMBL:FP102115
Ensembl:ENSSSCT00000013632 Ensembl:ENSSSCT00000017102
Uniprot:F1S1P4
Length = 123
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 77 EEQRA-QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREY-FRRDGKLVPTAKGI 134
E RA K I+ D+ + ++ R V++++FK + + IREY + ++ P KGI
Sbjct: 40 ETSRALSPSKHISSSRDANMFQIGKMRYVSVRDFKEKVLIDIREYQMDPEHEMKPGTKGI 99
Query: 135 ALTSEQWRAFSKSLPAIDEAVVKM 158
+L EQ + + D+AV K+
Sbjct: 100 SLNPEQQNQLKEQISDNDDAVRKV 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 450 450 0.00092 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 619 (66 KB)
Total size of DFA: 280 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:10
No. of threads or processors used: 24
Search cpu time: 43.71u 0.08s 43.79t Elapsed: 00:00:27
Total cpu time: 43.71u 0.08s 43.79t Elapsed: 00:00:37
Start: Thu May 9 15:01:30 2013 End: Thu May 9 15:02:07 2013