BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013049
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis
thaliana GN=KELP PE=1 SV=1
Length = 165
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 13 VMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLLS--TTESTDNRI 70
V+E+L SDM+E+TEFKVR ASE+L IDLS+ +HK F+R VVE FL E ++++
Sbjct: 13 VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQV 72
Query: 71 EPDLEVEEQRAQIG-KRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVP 129
+ E ++ G K +DDGD IIC+LS+KR V IQEFKG++ VSIREY+++DGK +P
Sbjct: 73 NKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELP 132
Query: 130 TAKGIALTSEQWRAFSKSLPAIDEAVVKMQSKL 162
T+KGI+LT EQW F K++PAI+ AV KM+S++
Sbjct: 133 TSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis
thaliana GN=KIWI PE=1 SV=1
Length = 107
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAI 151
D ++C +S R V+++ + G+ ++ IRE++ +DGK +P KGI+L+ +QW I
Sbjct: 40 DIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDI 99
Query: 152 DEAVVKM 158
++A+ +
Sbjct: 100 EKALSDL 106
>sp|P87294|TCP4_SCHPO Putative RNA polymerase II transcriptional coactivator
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16A10.02 PE=1 SV=1
Length = 136
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 101 KRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQS 160
K+ + + EF+G +V IREY+ +DG ++P KGIAL +W+ + + +D+++ + S
Sbjct: 37 KKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSLGLVDS 96
Query: 161 KLRSE 165
SE
Sbjct: 97 GSDSE 101
>sp|Q94045|TCP4_CAEEL Putative RNA polymerase II transcriptional coactivator
OS=Caenorhabditis elegans GN=T13F2.2 PE=3 SV=1
Length = 124
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 82 QIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYF--RRDGKLVPTAKGIALTSE 139
++ R+ D + + ++ N R + +FKG+ +V+IREY+ R K++P+ KGI+L+
Sbjct: 49 EVSGRLKDSDGNEMFEIGNLRYATVSKFKGKEYVNIREYYIDRDSQKMMPSRKGISLSKA 108
Query: 140 QWRAFSKSLPAID 152
QW +P ID
Sbjct: 109 QWANLKDLIPEID 121
>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15
OS=Gallus gallus GN=SUB1 PE=2 SV=1
Length = 126
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPA 150
D + ++ R V++++FKG+ + IREY+ ++G++ P KGI+L EQW + +
Sbjct: 59 DENMFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISD 118
Query: 151 IDEAVVKM 158
ID+AV K+
Sbjct: 119 IDDAVRKL 126
>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15
OS=Pongo abelii GN=SUB1 PE=2 SV=1
Length = 127
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPA 150
D + ++ R V++++FKG+ + IREY+ +G++ P KGI+L EQW + +
Sbjct: 60 DDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISD 119
Query: 151 IDEAVVKM 158
ID+AV K+
Sbjct: 120 IDDAVRKL 127
>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15
OS=Macaca fascicularis GN=SUB1 PE=2 SV=1
Length = 127
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPA 150
D + ++ R V++++FKG+ + IREY+ +G++ P KGI+L EQW + +
Sbjct: 60 DDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISD 119
Query: 151 IDEAVVKM 158
ID+AV K+
Sbjct: 120 IDDAVRKL 127
>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo
sapiens GN=SUB1 PE=1 SV=3
Length = 127
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPA 150
D + ++ R V++++FKG+ + IREY+ +G++ P KGI+L EQW + +
Sbjct: 60 DDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISD 119
Query: 151 IDEAVVKM 158
ID+AV K+
Sbjct: 120 IDDAVRKL 127
>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15
OS=Rattus norvegicus GN=Sub1 PE=2 SV=3
Length = 127
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPA 150
D + ++ R V++++FKG+ + IREY+ +G++ P KGI+L EQW + +
Sbjct: 60 DDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISD 119
Query: 151 IDEAVVKM 158
ID+AV K+
Sbjct: 120 IDDAVRKL 127
>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus
musculus GN=Sub1 PE=1 SV=3
Length = 127
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPA 150
D + ++ R V++++FKG+ + IREY+ +G++ P KGI+L EQW + +
Sbjct: 60 DDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISD 119
Query: 151 IDEAVVKM 158
ID+AV K+
Sbjct: 120 IDDAVRKL 127
>sp|Q9VLR5|TCP4_DROME RNA polymerase II transcriptional coactivator OS=Drosophila
melanogaster GN=Ssb-c31a PE=2 SV=1
Length = 110
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 67 DNRIEPDLEVEEQRAQIGKRINDDGD--SIICKLSNKRTVAIQEFKGRAFVSIREYFRRD 124
D+RI+P + ++ D G+ + L R V I EF+GR V IRE++ +
Sbjct: 18 DDRIKPASKKAKESDAPNSDPKDSGENGATSWTLEGLRQVRINEFRGRKSVDIREFYDKG 77
Query: 125 GKLVPTAKGIALTSEQWRAFSKSLPAIDEAV 155
G+++P KGI+L+ QW+ + + A+
Sbjct: 78 GQILPGKKGISLSLIQWKKLLEVAEEVTRAI 108
>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1
Length = 172
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 79 QRAQIGKRINDDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTS 138
Q ++ K + DG++ +L N R ++ F+ V+IREY+ GKL+P KGI+L+
Sbjct: 30 QPQELTKGSDQDGNTF-WELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKGISLSL 88
Query: 139 EQWRAFSKSLPAID 152
Q++ K +P ++
Sbjct: 89 AQYQNLLKVIPQLN 102
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94
OS=Nicotiana tabacum PE=2 SV=1
Length = 1328
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 110/261 (42%), Gaps = 27/261 (10%)
Query: 188 ELHRFNGKN-YRVWAQQIELLLKQLKVAYVL-TDPCPIVTLCPQASSEEVTRVKAAERKW 245
E+ +FNG N + W +++ LL Q + VL D T+ + ++ R +A R
Sbjct: 7 EVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLH 66
Query: 246 LNDNNICRHHILNFLSDHLYYQYSKRTSSAKELWEELKLVYLDEEFGTKRSQVKKYIEFQ 305
L+D+ ++N + D +A+ +W L+ +Y+ + K K+
Sbjct: 67 LSDD------VVNNIIDE---------DTARGIWTRLESLYMSKTLTNKLYLKKQLYALH 111
Query: 306 MFDEKSVFEQALELNKIADSIVAAGMMIYENFHVSVILSKLPLSWKDFCIKLMR------ 359
M + + N + + G+ I E ++L+ LP S+ + ++
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIE 171
Query: 360 MEYLTFTMLMDH-IKAEEESRSHNKQEEPSKFVELSPAVNFGPRMREMSKKRRESEMDSK 418
++ +T +L++ ++ + E++ E + N+G R ++ + ++ S+
Sbjct: 172 LKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYG---RSGARGKSKNRSKSR 228
Query: 419 TVVCYNCRKKGHVAKHCHNKR 439
CYNC + GH + C N R
Sbjct: 229 VRNCYNCNQPGHFKRDCPNPR 249
>sp|Q9FHX8|MDA3_ARATH Mediator-associated protein 3 OS=Arabidopsis thaliana
GN=At5g42060 PE=1 SV=1
Length = 92
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 42/63 (66%)
Query: 8 RIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLLSTTESTD 67
+I++TV ++L++S++ ++TE K R EAS +L +DLS +K ++ VE+FL +
Sbjct: 18 KIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFLEEAVKLIG 77
Query: 68 NRI 70
N++
Sbjct: 78 NKL 80
>sp|P54000|SUB1_YEAST RNA polymerase II transcriptional coactivator SUB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUB1 PE=1
SV=1
Length = 292
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 92 DSIICKLSNKRTVAIQEFKGRAFVSIREYF--RRDGKLVPTAKGIALTSEQWRAFSKSLP 149
D+I NKR V +++F+ + IREY+ G++ P KGI+LT + + K
Sbjct: 38 DAIFDLGKNKR-VTVRQFRNINLIDIREYYLDSSTGEMKPGKKGISLTEDLYDELLKHRL 96
Query: 150 AIDEAVVKMQSK 161
IDEA+ ++ SK
Sbjct: 97 NIDEALRRLGSK 108
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
Length = 1409
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 117/260 (45%), Gaps = 30/260 (11%)
Query: 192 FNGKNYRVWAQQIELLLKQLKVAYVLTDPCPIVTLCPQASSEEVTRVKAAERKWLNDNNI 251
F+G+ Y +W +I LL + V V+ P +E K AER
Sbjct: 11 FDGEKYAIWKFRIRALLAEQDVLKVVDGLMP---------NEVDDSWKKAER-------C 54
Query: 252 CRHHILNFLSDHLYYQYSKRTSSAKELWEELKLVYLDEEFGTKRSQVKKYIEFQMFDEKS 311
+ I+ +LSD + ++ +A+++ E L VY + ++ + K+ + ++ E S
Sbjct: 55 AKSTIIEYLSDS-FLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMS 113
Query: 312 VFEQALELNKIADSIVAAGMMIYENFHVSVILSKLPLSWKDF--CIKLMRMEYLTFTMLM 369
+ +++ ++AAG I E +S +L LP + I+ + E LT +
Sbjct: 114 LLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVK 173
Query: 370 DHIKAEEESRSHNKQEEPSKFVELSPAVNFGPRM-------REMSKKRRESEMDSK-TVV 421
+ + ++E + N + SK V ++ V+ ++K ++ + +SK V
Sbjct: 174 NRL-LDQEIKIKNDHNDTSKKV-MNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVK 231
Query: 422 CYNCRKKGHVAKHC-HNKRL 440
C++C ++GH+ K C H KR+
Sbjct: 232 CHHCGREGHIKKDCFHYKRI 251
>sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag PE=3 SV=3
Length = 500
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPR 409
>sp|P35962|GAG_HV1Y2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag PE=1 SV=2
Length = 500
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPR 409
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 387 KTVKCFNCGKEGHIAKNCRAPR 408
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPR 409
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPR 409
>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag PE=3 SV=3
Length = 502
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 390 KTVKCFNCGKEGHIAKNCRAPR 411
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 390 KTVKCFNCGKEGHIAKNCRAPR 411
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPR 409
>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag PE=3 SV=3
Length = 499
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 387 KTVKCFNCGKEGHIAKNCRAPR 408
>sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag PE=1 SV=3
Length = 500
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+AK+C R
Sbjct: 388 KTVKCFNCGKEGHIAKNCRAPR 409
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH+AK+C R
Sbjct: 390 KTIKCFNCGKEGHIAKNCRAPR 411
>sp|P12495|GAG_HV1Z2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag PE=1 SV=3
Length = 501
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH+AK+C R
Sbjct: 390 KTIKCFNCGKEGHIAKNCRAPR 411
>sp|P05960|POL_HV1C4 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate CDC-451) GN=gag-pol PE=3
SV=3
Length = 550
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 417 SKTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+A++C R
Sbjct: 387 GKTVKCFNCGKEGHIARNCKAPR 409
>sp|P05887|GAG_HV1C4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate CDC-451) GN=gag PE=3 SV=3
Length = 500
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 417 SKTVVCYNCRKKGHVAKHCHNKR 439
KTV C+NC K+GH+A++C R
Sbjct: 387 GKTVKCFNCGKEGHIARNCKAPR 409
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 409 KRRESEMDSKTVVCYNCRKKGHVAKHCHNKR 439
+R ++ + T+ C+NC K+GH+A++C R
Sbjct: 383 QRGQNPIRKGTIKCFNCGKEGHIARNCRAPR 413
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 422 CYNCRKKGHVAKHCHNKRLHQEINDNC 448
C NC ++GH AK C N+R+ E + C
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPC 667
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 409 KRRESEMDSKTVVCYNCRKKGHVAKHCHNKR 439
+R ++ + T+ C+NC K+GH+A++C R
Sbjct: 383 QRGQNPIRKGTIKCFNCGKEGHIARNCRAPR 413
>sp|P03355|POL_MLVMS Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate
Shinnick) GN=gag-pol PE=1 SV=4
Length = 1738
Score = 34.7 bits (78), Expect = 1.5, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 375 EEESRSHNKQEEPSKFVELSPAVNFGPRMREMSKKRRESEMDSKTVVCYNCRKKGHVAKH 434
+E+ R + E SK L V G + +RR S++D C C++KGH AK
Sbjct: 462 KEKERDRRRHREMSK---LLATVVSGQKQDRQGGERRRSQLDRDQ--CAYCKEKGHWAKD 516
Query: 435 CHNK 438
C K
Sbjct: 517 CPKK 520
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
EK505) GN=gag-pol PE=3 SV=3
Length = 1448
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH+A++C R
Sbjct: 391 KTIKCFNCGKEGHLARNCKAPR 412
>sp|Q9IDV8|GAG_HV1YB Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag PE=3 SV=3
Length = 511
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH+A++C R
Sbjct: 390 KTIKCFNCGKEGHLARNCKAPR 411
>sp|Q1A250|GAG_SIVEK Gag polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag PE=3 SV=3
Length = 511
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH+A++C R
Sbjct: 391 KTIKCFNCGKEGHLARNCKAPR 412
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH+A++C R
Sbjct: 390 KTIKCFNCGKEGHLARNCKAPR 411
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 416 DSKTVV-CYNCRKKGHVAKHCHNKR 439
D K +V C+NC K+GH+AK+C R
Sbjct: 384 DHKRIVKCFNCGKQGHIAKNCRAPR 408
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 405 EMSKKRRESEMDSKTVVCYNCRKKGHVAKHCHNKRLHQEINDNC 448
E +K+++ +MD +VC C GH+A+ C + ++DN
Sbjct: 277 EAHEKKQQQQMDITKIVCKICGNIGHIARDCKQNNGKRPLDDNA 320
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 416 DSKTVV-CYNCRKKGHVAKHCHNKR 439
D K +V C+NC K+GH+AK+C R
Sbjct: 384 DHKRIVKCFNCGKQGHIAKNCRAPR 408
>sp|P12502|POL_SIVS4 Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
F236/smH4) GN=gag-pol PE=3 SV=2
Length = 1449
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
KT+ C+NC K+GH AK C R
Sbjct: 390 KTIKCWNCGKEGHSAKQCRAPR 411
>sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag PE=3 SV=3
Length = 497
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 416 DSKTVV-CYNCRKKGHVAKHCHNKR 439
D K +V C+NC K+GH+AK+C R
Sbjct: 384 DHKRIVKCFNCGKQGHIAKNCRAPR 408
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
K + C+NC K+GH+AK+C R
Sbjct: 389 KIIKCFNCGKEGHIAKNCRAPR 410
>sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag PE=1 SV=3
Length = 497
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 416 DSKTVV-CYNCRKKGHVAKHCHNKR 439
D K +V C+NC K+GH+AK+C R
Sbjct: 384 DHKRIVKCFNCGKQGHIAKNCRAPR 408
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
K + C+NC K+GH+AK+C R
Sbjct: 391 KIIKCFNCGKEGHIAKNCRAPR 412
>sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag PE=3 SV=3
Length = 500
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
K + C+NC K+GH+AK+C R
Sbjct: 389 KIIKCFNCGKEGHIAKNCRAPR 410
>sp|P31634|GAG_SIVMS Gag polyprotein OS=Simian immunodeficiency virus (isolate STM)
GN=gag PE=3 SV=1
Length = 510
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
+TV C+NC K+GH AK C R
Sbjct: 389 RTVKCWNCGKEGHTAKQCKAPR 410
>sp|P05888|GAG_HV1MN Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag PE=1 SV=3
Length = 507
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
K + C+NC K+GH+AK+C R
Sbjct: 391 KIIKCFNCGKEGHIAKNCRAPR 412
>sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag PE=3 SV=3
Length = 504
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 418 KTVVCYNCRKKGHVAKHCHNKR 439
K V C+NC K+GH+A++C R
Sbjct: 388 KNVKCFNCGKEGHIARNCRAPR 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,285,952
Number of Sequences: 539616
Number of extensions: 6077396
Number of successful extensions: 19952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 19754
Number of HSP's gapped (non-prelim): 230
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)