Query 013049
Match_columns 450
No_of_seqs 365 out of 1845
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 100.0 3.2E-29 1.1E-33 183.1 6.6 64 95-158 2-66 (66)
2 4agh_A Mosub1, transcription c 99.9 2.1E-27 7.2E-32 203.1 7.9 78 89-166 42-119 (158)
3 1q1v_A DEK protein; winged-hel 99.5 7.8E-15 2.7E-19 109.1 6.7 57 3-61 11-68 (70)
4 1u6p_A GAG polyprotein; MLV, A 98.1 2.4E-06 8.1E-11 60.2 4.4 25 418-442 22-46 (56)
5 1a6b_B Momulv, zinc finger pro 98.1 1.1E-06 3.7E-11 57.4 2.3 23 419-441 10-32 (40)
6 1nc8_A Nucleocapsid protein; H 98.1 1.8E-06 6E-11 52.6 2.3 22 419-440 6-27 (29)
7 1dsq_A Nucleic acid binding pr 98.0 1.6E-06 5.3E-11 51.3 1.7 22 419-440 2-23 (26)
8 2ysa_A Retinoblastoma-binding 97.4 6.4E-05 2.2E-09 52.6 2.5 21 419-439 7-27 (55)
9 2cqf_A RNA-binding protein LIN 96.6 0.0009 3.1E-08 48.5 2.5 23 419-441 29-51 (63)
10 2ec7_A GAG polyprotein (PR55GA 96.6 0.00078 2.7E-08 46.2 1.8 20 420-439 28-47 (49)
11 2ihx_A Nucleocapsid (NC) prote 96.6 0.00081 2.8E-08 48.4 1.8 24 419-442 30-53 (61)
12 2a51_A Nucleocapsid protein; s 96.4 0.00098 3.3E-08 43.3 1.5 18 421-438 2-19 (39)
13 2ec7_A GAG polyprotein (PR55GA 96.4 0.0013 4.3E-08 45.1 2.0 21 419-439 6-26 (49)
14 2a51_A Nucleocapsid protein; s 96.4 0.0011 3.8E-08 43.0 1.6 19 419-437 21-39 (39)
15 1cl4_A Protein (GAG polyprotei 96.4 0.0013 4.5E-08 47.1 2.1 22 419-440 30-51 (60)
16 1a1t_A Nucleocapsid protein; s 96.4 0.0014 4.8E-08 46.0 2.1 20 420-439 34-53 (55)
17 2bl6_A Nucleocapsid protein P1 96.3 0.0013 4.4E-08 42.2 1.3 18 420-437 20-37 (37)
18 2bl6_A Nucleocapsid protein P1 96.2 0.0017 5.7E-08 41.6 1.5 18 421-438 2-19 (37)
19 3nyb_B Protein AIR2; polya RNA 96.1 0.0023 7.8E-08 48.9 2.4 23 419-441 46-68 (83)
20 1a1t_A Nucleocapsid protein; s 95.9 0.0027 9.3E-08 44.5 1.6 20 419-438 12-31 (55)
21 2ihx_A Nucleocapsid (NC) prote 95.9 0.0033 1.1E-07 45.1 1.9 21 419-439 4-24 (61)
22 2li8_A Protein LIN-28 homolog 95.8 0.0055 1.9E-07 45.7 3.2 21 419-439 46-66 (74)
23 2li8_A Protein LIN-28 homolog 95.8 0.0033 1.1E-07 47.0 1.9 20 419-438 24-43 (74)
24 1cl4_A Protein (GAG polyprotei 95.3 0.003 1E-07 45.1 0.0 20 420-439 2-21 (60)
25 2cqf_A RNA-binding protein LIN 95.2 0.0068 2.3E-07 43.7 1.7 20 419-438 7-26 (63)
26 3ts2_A Protein LIN-28 homolog 95.0 0.0086 2.9E-07 51.2 2.1 22 419-440 119-140 (148)
27 3ts2_A Protein LIN-28 homolog 94.7 0.017 5.6E-07 49.4 3.0 21 419-439 97-117 (148)
28 3nyb_B Protein AIR2; polya RNA 94.6 0.01 3.6E-07 45.2 1.4 22 418-439 4-25 (83)
29 2lli_A Protein AIR2; RNA surve 92.9 0.038 1.3E-06 45.6 1.9 21 418-438 104-124 (124)
30 4g06_A Uncharacterized protein 90.7 0.53 1.8E-05 34.8 5.6 46 101-149 31-77 (79)
31 2l3a_A Uncharacterized protein 90.2 0.52 1.8E-05 35.0 5.2 46 101-149 26-72 (82)
32 3pm7_A Uncharacterized protein 90.1 0.36 1.2E-05 35.7 4.3 47 101-150 24-71 (80)
33 2lli_A Protein AIR2; RNA surve 89.7 0.12 4.2E-06 42.4 1.8 22 419-440 64-85 (124)
34 2hqh_E Restin; beta/BETA struc 82.6 0.41 1.4E-05 27.4 0.9 19 419-437 3-21 (26)
35 2ltd_A Uncharacterized protein 77.9 0.54 1.8E-05 34.7 0.0 45 102-149 25-70 (80)
36 3alr_A Nanos protein; zinc-fin 73.9 1.4 4.8E-05 34.3 1.8 26 419-444 71-99 (106)
37 2cg5_B Fatty acid synthase; tr 71.4 4.3 0.00015 31.2 4.1 40 6-45 8-61 (91)
38 2dnw_A Acyl carrier protein; A 62.4 11 0.00037 28.9 4.9 45 1-45 8-70 (99)
39 1nq4_A Oxytetracycline polyket 61.1 13 0.00044 28.4 5.1 46 1-46 1-63 (95)
40 2pzo_E CAP-Gly domain-containi 58.5 3.2 0.00011 26.5 0.9 19 419-437 20-38 (42)
41 1or5_A Acyl carrier protein; A 50.8 19 0.00064 26.3 4.4 45 1-45 1-61 (83)
42 2l4b_A Acyl carrier protein; i 50.3 27 0.00092 25.8 5.3 42 4-45 8-66 (88)
43 3ce7_A Specific mitochodrial a 48.0 19 0.00064 28.2 4.1 43 4-46 15-79 (107)
44 1vku_A Acyl carrier protein; T 45.9 32 0.0011 26.5 5.1 25 22-46 48-72 (100)
45 3e2u_E CAP-Gly domain-containi 44.4 7.2 0.00025 25.0 0.9 19 419-437 20-38 (42)
46 2pag_A Hypothetical protein; n 43.0 28 0.00094 28.6 4.6 44 8-53 3-48 (135)
47 2kwl_A ACP, acyl carrier prote 42.8 47 0.0016 24.1 5.5 25 22-46 41-65 (84)
48 1x3o_A Acyl carrier protein; s 42.2 47 0.0016 23.6 5.4 42 4-45 5-60 (80)
49 1f80_D Acyl carrier protein; t 41.3 39 0.0013 24.2 4.8 42 4-45 7-62 (81)
50 2ll0_A Uncharacterized protein 39.9 20 0.00068 28.0 2.9 40 19-62 57-96 (104)
51 1fh1_A NODF, nodulation protei 39.9 10 0.00036 28.6 1.4 43 1-43 1-64 (92)
52 1l0i_A Acyl carrier protein; a 39.3 48 0.0016 23.5 5.0 42 4-45 3-58 (78)
53 2lol_A ACP, acyl carrier prote 36.7 65 0.0022 22.9 5.4 43 4-46 6-62 (81)
54 2jq4_A AGR_C_4658P, hypothetic 36.0 61 0.0021 25.0 5.4 23 23-45 56-78 (105)
55 4dxe_H ACP, acyl carrier prote 35.6 51 0.0017 25.3 4.8 42 4-45 26-81 (101)
56 2prv_A Uncharacterized protein 33.3 42 0.0015 27.8 4.3 46 7-54 5-51 (153)
57 1dny_A Non-ribosomal peptide s 31.3 68 0.0023 23.8 4.8 41 4-44 14-65 (91)
58 2qnw_A Acyl carrier protein; m 30.9 79 0.0027 22.7 5.0 24 22-45 39-62 (82)
59 3trk_A Nonstructural polyprote 30.3 17 0.00057 33.6 1.3 15 132-146 23-37 (324)
60 2ehs_A ACP, acyl carrier prote 30.0 81 0.0028 22.0 4.9 40 6-45 3-56 (77)
61 1af8_A Actinorhodin polyketide 29.9 38 0.0013 24.7 3.1 46 1-46 1-64 (86)
62 2cnr_A FAS, ACP, acyl carrier 29.8 80 0.0027 22.4 4.9 42 4-45 7-62 (82)
63 2jro_A Uncharacterized protein 29.3 81 0.0028 23.2 4.5 47 108-161 19-66 (78)
64 2icg_A LIN2918 protein; hypoth 29.1 33 0.0011 28.6 3.0 29 24-54 26-54 (160)
65 3lhr_A Zinc finger protein 24; 29.0 80 0.0027 24.1 4.8 74 296-372 7-84 (93)
66 3dmc_A NTF2-like protein; stru 28.6 48 0.0016 26.6 3.8 25 102-126 108-132 (134)
67 1dd4_C 50S ribosomal protein L 25.8 86 0.0029 19.9 3.7 24 20-43 11-34 (40)
68 3gzm_A Acyl carrier protein; h 25.6 1E+02 0.0035 22.0 4.8 42 4-45 5-60 (81)
69 2cgq_A Acyl carrier protein AC 24.8 35 0.0012 27.0 2.1 41 6-46 28-81 (113)
70 1ojj_A Endoglucanase I; hydrol 24.0 69 0.0024 31.0 4.3 40 100-139 263-313 (402)
71 3ejb_A Acyl carrier protein; p 23.1 94 0.0032 23.4 4.3 41 5-45 23-77 (97)
72 4i4d_A Peptide synthetase NRPS 22.2 1.3E+02 0.0046 22.1 5.0 41 4-44 16-67 (93)
73 2fi2_A Zinc finger protein 42; 22.0 48 0.0017 25.3 2.3 73 297-372 9-85 (94)
74 2juo_A GA-binding protein alph 21.7 25 0.00086 26.3 0.6 18 27-44 15-32 (89)
75 2ava_A ACP I, acyl carrier pro 21.6 1.1E+02 0.0038 21.7 4.4 41 5-45 5-59 (82)
76 2kw2_A Specialized acyl carrie 21.1 1.5E+02 0.005 22.4 5.1 42 4-45 3-58 (101)
77 1klp_A ACP, ACPM, meromycolate 20.6 1.7E+02 0.0058 22.6 5.5 23 23-45 40-62 (115)
78 2ju1_A Erythronolide synthase; 20.4 1.3E+02 0.0043 22.1 4.5 41 5-45 21-75 (95)
79 1y7q_A AW-1, zinc finger prote 20.3 51 0.0017 25.4 2.1 73 297-372 11-87 (98)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=99.95 E-value=3.2e-29 Score=183.13 Aligned_cols=64 Identities=36% Similarity=0.797 Sum_probs=61.9
Q ss_pred EEEcCCceeeEEeeecCceeEeeEeEE-ecCCcccCCCcccccCHHHHHHHHhhhhHHHHHHHHh
Q 013049 95 ICKLSNKRTVAIQEFKGRAFVSIREYF-RRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKM 158 (450)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~ir~~~-~~~~~~~p~~kgi~l~~~~~~~l~~~~~~i~~~~~~~ 158 (450)
+|+||++|||+|++|||++|||||||| ++||+++|||||||||++||+.|++++++|++||+++
T Consensus 2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~ 66 (66)
T 1pcf_A 2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 66 (66)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999 7899999999999999999999999999999999863
No 2
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=99.94 E-value=2.1e-27 Score=203.06 Aligned_cols=78 Identities=36% Similarity=0.647 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCceeeEEeeecCceeEeeEeEEecCCcccCCCcccccCHHHHHHHHhhhhHHHHHHHHhccccCCCC
Q 013049 89 DDGDSIICKLSNKRTVAIQEFKGRAFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQSKLRSES 166 (450)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~g~~~~~ir~~~~~~~~~~p~~kgi~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 166 (450)
+++++.+|+||++|||+|++|||++||||||||+++|+|+||||||||+++||..|++++++|++||++++..++.+.
T Consensus 42 d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~g~~~~~~~ 119 (158)
T 4agh_A 42 DAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAELRSRGHDITDDS 119 (158)
T ss_dssp CTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTCCCCC--
T ss_pred CCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 344557999999999999999999999999999999999999999999999999999999999999999988776543
No 3
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.54 E-value=7.8e-15 Score=109.13 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHh-CCCCCCchhhHHHHHHHHHHHhh
Q 013049 3 TVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERL-GIDLSDANHKRFIRGVVESFLLS 61 (450)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~t~~~~r~~~~~~~-~~~l~~~~~k~~~~~~v~~~~~~ 61 (450)
.++...|+++|++||++|||+|+|.++||++|+++| |+||| +||+||+++|+.||+.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs--~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT--ERKDFIKTTVKELISL 68 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS--HHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh--HHHHHHHHHHHHHHhc
Confidence 477899999999999999999999999999999999 99999 8899999999999963
No 4
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.13 E-value=2.4e-06 Score=60.21 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=21.6
Q ss_pred CcccccccCcccccccccCCccccc
Q 013049 418 KTVVCYNCRKKGHVAKHCHNKRLHQ 442 (450)
Q Consensus 418 ~~~~C~~Cgk~GH~~~~C~~~~~~k 442 (450)
....||+||+.|||+++||.+.++.
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~~~ 46 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPRGP 46 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCCSS
T ss_pred CCCcceeCCCCCcccccCcCCcccc
Confidence 4678999999999999999987643
No 5
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.11 E-value=1.1e-06 Score=57.43 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.5
Q ss_pred cccccccCcccccccccCCcccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRLH 441 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~~ 441 (450)
...||+||+.|||+++||.+.++
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~~ 32 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPRG 32 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCC
T ss_pred CCeeeECCCCCcchhhCcCCccc
Confidence 47899999999999999997654
No 6
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.05 E-value=1.8e-06 Score=52.57 Aligned_cols=22 Identities=41% Similarity=1.014 Sum_probs=19.4
Q ss_pred cccccccCcccccccccCCccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRL 440 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~ 440 (450)
...||+||+.||++++|+.+.+
T Consensus 6 ~~~C~nCgk~GH~ar~C~~prk 27 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPRR 27 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSSS
T ss_pred CCEEEECCccccCHhHCccccc
Confidence 4679999999999999998754
No 7
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.03 E-value=1.6e-06 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.964 Sum_probs=18.3
Q ss_pred cccccccCcccccccccCCccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRL 440 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~ 440 (450)
...||+||+.||++++||..+.
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEXX 23 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC--
T ss_pred CCeeEeCCCCCcccccCCCccc
Confidence 3579999999999999998754
No 8
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=6.4e-05 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.850 Sum_probs=18.1
Q ss_pred cccccccCcccccccccCCcc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~ 439 (450)
...||.||++||++++||...
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGGG
T ss_pred CCccccCCCcCcccccCCCCC
Confidence 357999999999999999543
No 9
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.0009 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.8
Q ss_pred cccccccCcccccccccCCcccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRLH 441 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~~ 441 (450)
...||.|++.||++++||....+
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~~~ 51 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKAQQ 51 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGGCS
T ss_pred CCccCCcCCcCCccCcCCCcccc
Confidence 46899999999999999987643
No 10
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.59 E-value=0.00078 Score=46.15 Aligned_cols=20 Identities=35% Similarity=0.939 Sum_probs=16.3
Q ss_pred ccccccCcccccccccCCcc
Q 013049 420 VVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 420 ~~C~~Cgk~GH~~~~C~~~~ 439 (450)
..||.||+.||++++||.++
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSC
T ss_pred CeeCcCCCcCCccCCCcCCC
Confidence 56888888888888888765
No 11
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.56 E-value=0.00081 Score=48.38 Aligned_cols=24 Identities=33% Similarity=0.611 Sum_probs=19.0
Q ss_pred cccccccCcccccccccCCccccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRLHQ 442 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~~k 442 (450)
...||.|++.||++++||..+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~~ 53 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRDGNQ 53 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC---
T ss_pred CCeeCCCCCCCCCcCCCcCCCcCC
Confidence 367999999999999999987643
No 12
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.44 E-value=0.00098 Score=43.27 Aligned_cols=18 Identities=44% Similarity=1.148 Sum_probs=14.7
Q ss_pred cccccCcccccccccCCc
Q 013049 421 VCYNCRKKGHVAKHCHNK 438 (450)
Q Consensus 421 ~C~~Cgk~GH~~~~C~~~ 438 (450)
.||+|++.||++++||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 588888888888888865
No 13
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.41 E-value=0.0013 Score=45.08 Aligned_cols=21 Identities=43% Similarity=1.097 Sum_probs=18.7
Q ss_pred cccccccCcccccccccCCcc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~ 439 (450)
...||+|++.||++++|+...
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~~ 26 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAPR 26 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCSS
T ss_pred cCeeeecCCCCcChhhCcCCC
Confidence 467999999999999999863
No 14
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.39 E-value=0.0011 Score=43.00 Aligned_cols=19 Identities=32% Similarity=0.718 Sum_probs=17.1
Q ss_pred cccccccCcccccccccCC
Q 013049 419 TVVCYNCRKKGHVAKHCHN 437 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~ 437 (450)
...|+.|++.||++++||+
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3579999999999999985
No 15
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.38 E-value=0.0013 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=19.6
Q ss_pred cccccccCcccccccccCCccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRL 440 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~ 440 (450)
...||.|++.||++++|+.+..
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTTS
T ss_pred CcceeECCCCCCccCcCCCccc
Confidence 4679999999999999999864
No 16
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.36 E-value=0.0014 Score=46.04 Aligned_cols=20 Identities=35% Similarity=0.943 Sum_probs=15.3
Q ss_pred ccccccCcccccccccCCcc
Q 013049 420 VVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 420 ~~C~~Cgk~GH~~~~C~~~~ 439 (450)
..||.|++.||++++||..+
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSSC
T ss_pred CEeCCCCCcCCccCCCcCcC
Confidence 56888888888888887754
No 17
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.27 E-value=0.0013 Score=42.15 Aligned_cols=18 Identities=39% Similarity=1.209 Sum_probs=15.9
Q ss_pred ccccccCcccccccccCC
Q 013049 420 VVCYNCRKKGHVAKHCHN 437 (450)
Q Consensus 420 ~~C~~Cgk~GH~~~~C~~ 437 (450)
..|+.|++.||++++||.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 579999999999999984
No 18
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.19 E-value=0.0017 Score=41.59 Aligned_cols=18 Identities=44% Similarity=1.187 Sum_probs=16.7
Q ss_pred cccccCcccccccccCCc
Q 013049 421 VCYNCRKKGHVAKHCHNK 438 (450)
Q Consensus 421 ~C~~Cgk~GH~~~~C~~~ 438 (450)
.||+|++.||++++||..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 599999999999999975
No 19
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0023 Score=48.94 Aligned_cols=23 Identities=48% Similarity=1.055 Sum_probs=20.2
Q ss_pred cccccccCcccccccccCCcccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRLH 441 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~~ 441 (450)
...|++||+.||+.++||..+..
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r~s 68 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKRSS 68 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCCSC
T ss_pred CCeecccCCCCcCcccCCccccC
Confidence 57899999999999999997643
No 20
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=95.89 E-value=0.0027 Score=44.52 Aligned_cols=20 Identities=55% Similarity=1.218 Sum_probs=18.2
Q ss_pred cccccccCcccccccccCCc
Q 013049 419 TVVCYNCRKKGHVAKHCHNK 438 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~ 438 (450)
...||+|++.||++++|+..
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSC
T ss_pred CcceeeeCCCCcChhhcCCC
Confidence 46799999999999999986
No 21
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=95.85 E-value=0.0033 Score=45.15 Aligned_cols=21 Identities=38% Similarity=0.941 Sum_probs=18.8
Q ss_pred cccccccCcccccccccCCcc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~ 439 (450)
...||+|++.||++++||...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTT
T ss_pred CCcccccCCCCeehhhCcCCc
Confidence 467999999999999999874
No 22
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.84 E-value=0.0055 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=16.0
Q ss_pred cccccccCcccccccccCCcc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~ 439 (450)
...||.|++.||++++||...
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTGG
T ss_pred CCccCCcCCcCCccCcCcCCc
Confidence 456888888888888887765
No 23
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.82 E-value=0.0033 Score=46.98 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=17.9
Q ss_pred cccccccCcccccccccCCc
Q 013049 419 TVVCYNCRKKGHVAKHCHNK 438 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~ 438 (450)
...||+|++.||++++|+..
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSSC
T ss_pred CCcccccCCcCcCcccCCCC
Confidence 46799999999999999964
No 24
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=95.28 E-value=0.003 Score=45.13 Aligned_cols=20 Identities=50% Similarity=1.130 Sum_probs=0.0
Q ss_pred ccccccCcccccccccCCcc
Q 013049 420 VVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 420 ~~C~~Cgk~GH~~~~C~~~~ 439 (450)
..||+|++.||++++||...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp --------------------
T ss_pred CccccCCCCCcCHhhCcCCC
Confidence 35999999999999999864
No 25
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.20 E-value=0.0068 Score=43.75 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=17.8
Q ss_pred cccccccCcccccccccCCc
Q 013049 419 TVVCYNCRKKGHVAKHCHNK 438 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~ 438 (450)
...||+|++.||++++|+..
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSC
T ss_pred CCcccccCCCCcChhhCCCC
Confidence 35799999999999999975
No 26
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=95.03 E-value=0.0086 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=14.2
Q ss_pred cccccccCcccccccccCCccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRL 440 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~ 440 (450)
...||.|++.||++++||.+.+
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTTC
T ss_pred CCcccccCCcCCEeccCcCCCC
Confidence 3457777777777777776544
No 27
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=94.70 E-value=0.017 Score=49.37 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=18.5
Q ss_pred cccccccCcccccccccCCcc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~ 439 (450)
...||+|++.||++++|+...
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~ 117 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPP 117 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCC
T ss_pred CCcccEeCCccchhhhCCCCC
Confidence 467999999999999999843
No 28
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.01 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=17.3
Q ss_pred CcccccccCcccccccccCCcc
Q 013049 418 KTVVCYNCRKKGHVAKHCHNKR 439 (450)
Q Consensus 418 ~~~~C~~Cgk~GH~~~~C~~~~ 439 (450)
+...|+.|+..||++++||...
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~ 25 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIW 25 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGT
T ss_pred ccCCCCCCCCCCCccccCCCcc
Confidence 4578999999999999999864
No 29
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.038 Score=45.60 Aligned_cols=21 Identities=48% Similarity=1.127 Sum_probs=18.6
Q ss_pred CcccccccCcccccccccCCc
Q 013049 418 KTVVCYNCRKKGHVAKHCHNK 438 (450)
Q Consensus 418 ~~~~C~~Cgk~GH~~~~C~~~ 438 (450)
....|++|++.||++++||..
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCCC
T ss_pred CCCCcCCCCCCCcCcccCcCC
Confidence 357899999999999999963
No 30
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=90.67 E-value=0.53 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=35.0
Q ss_pred ceeeEEeeecCce-eEeeEeEEecCCcccCCCcccccCHHHHHHHHhhhh
Q 013049 101 KRTVAIQEFKGRA-FVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLP 149 (450)
Q Consensus 101 ~~~~~~~~~~g~~-~~~ir~~~~~~~~~~p~~kgi~l~~~~~~~l~~~~~ 149 (450)
++-+..-.|.|+. -.|||.|=.+. .+.| |||+||.++...|++++.
T Consensus 31 ~KELNlVSWN~~~pKyDIR~W~pdh--~kMg-KGITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 31 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLSNEEFQTMVDAFK 77 (79)
T ss_dssp EEEEEEEEETTCCCEEEEEEECTTS--SCBC-CCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCCccccccCccc--cccc-CccccCHHHHHHHHHHHc
Confidence 3567777788764 89999995433 2444 999999999999998764
No 31
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=90.21 E-value=0.52 Score=35.01 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=34.0
Q ss_pred ceeeEEeeecCc-eeEeeEeEEecCCcccCCCcccccCHHHHHHHHhhhh
Q 013049 101 KRTVAIQEFKGR-AFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLP 149 (450)
Q Consensus 101 ~~~~~~~~~~g~-~~~~ir~~~~~~~~~~p~~kgi~l~~~~~~~l~~~~~ 149 (450)
++-+..-.|.|+ +-.|||.|=.+--+| | |||+||.++...|+..+.
T Consensus 26 ~KELNlVSWNg~~pKyDIR~Wspdh~kM--G-KGITLT~eE~~~L~~~L~ 72 (82)
T 2l3a_A 26 TKEINRVSFNGAPAKFDIRAWSPDHTKM--G-KGITLSNEEFQTMVDAFK 72 (82)
T ss_dssp EEEEEEEEESSSCEEEEEEEECSTTCCC--C-CCEEECHHHHHHHHHHHH
T ss_pred eEEEEEEeECCCCCCccccccCcchhhc--c-CcccccHHHHHHHHHHHH
Confidence 456677777765 489999995332222 2 999999999999988764
No 32
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=90.14 E-value=0.36 Score=35.71 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=34.8
Q ss_pred ceeeEEeeecCc-eeEeeEeEEecCCcccCCCcccccCHHHHHHHHhhhhH
Q 013049 101 KRTVAIQEFKGR-AFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPA 150 (450)
Q Consensus 101 ~~~~~~~~~~g~-~~~~ir~~~~~~~~~~p~~kgi~l~~~~~~~l~~~~~~ 150 (450)
++-+..-.|.|+ +-.|||.|=.+-- +.| |||+||.++...|++++..
T Consensus 24 ~KELNlVSWN~~~pKyDIR~W~pdh~--kMg-KGITLT~eE~~~Lk~~L~~ 71 (80)
T 3pm7_A 24 RKELNLISWNGRPPKFDLREWAPDHE--KMG-KGITLTNEEFAELSKTIKS 71 (80)
T ss_dssp EEEEEEECGGGCCCEEEEEEECTTSS--SEE-EEEEECHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCCCCCccccccCcchh--hcc-CcceeCHHHHHHHHHHHHH
Confidence 355666677765 4899999954322 334 9999999999999987754
No 33
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=89.68 E-value=0.12 Score=42.44 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.0
Q ss_pred cccccccCcccccccccCCccc
Q 013049 419 TVVCYNCRKKGHVAKHCHNKRL 440 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~~~~ 440 (450)
...|+.|++.||++++||...+
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~~ 85 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIWR 85 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCSTT
T ss_pred CccCCCCCcCCcchhhCCCccc
Confidence 4679999999999999998754
No 34
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=82.60 E-value=0.41 Score=27.36 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=16.5
Q ss_pred cccccccCcccccccccCC
Q 013049 419 TVVCYNCRKKGHVAKHCHN 437 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~ 437 (450)
.+.|-.|.-.||+..+|..
T Consensus 3 RpYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCND 21 (26)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CccchHHHHhCcccccCCc
Confidence 3679999999999999965
No 35
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=77.92 E-value=0.54 Score=34.70 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=31.3
Q ss_pred eeeEEeeecCc-eeEeeEeEEecCCcccCCCcccccCHHHHHHHHhhhh
Q 013049 102 RTVAIQEFKGR-AFVSIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLP 149 (450)
Q Consensus 102 ~~~~~~~~~g~-~~~~ir~~~~~~~~~~p~~kgi~l~~~~~~~l~~~~~ 149 (450)
+-+..-.|.|+ +-.|||.|=.+--+| | |||+||.++...|++.+.
T Consensus 25 KELNlVSWNg~~pKyDIR~Wspdh~kM--G-KGITLT~eE~~~L~~~Ln 70 (80)
T 2ltd_A 25 KELNRVSWNDAEPKYDIRTWSPDHEKM--G-KGITLSEEEFGVLLKELG 70 (80)
Confidence 34445556655 478999995332222 2 999999999999888764
No 36
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=73.88 E-value=1.4 Score=34.27 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.5
Q ss_pred cccccccCccc---ccccccCCccccccc
Q 013049 419 TVVCYNCRKKG---HVAKHCHNKRLHQEI 444 (450)
Q Consensus 419 ~~~C~~Cgk~G---H~~~~C~~~~~~k~~ 444 (450)
...|..||..| |+.+.||..++....
T Consensus 71 ~Y~CpiCGATGd~AHT~kYCP~~~~~~~s 99 (106)
T 3alr_A 71 QYKCPLCGATGAKAHTKRFCPMVDKNYCS 99 (106)
T ss_dssp GCCCTTTCCCGGGCCCGGGCTTCGGGGCC
T ss_pred cccCCCCCCcCCcccceecCCCCCCccCc
Confidence 46799999999 999999988765544
No 37
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=71.44 E-value=4.3 Score=31.16 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCC--------------chhhhHHHHHHHHHHHhCCCCCCc
Q 013049 6 EGRIRQTVMEVLKNSD--------------MEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 6 ~~~~~~~~~~~l~~~~--------------~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+..|++.|.+||.-.+ |+++..--+|..|++.||++|+..
T Consensus 8 ~~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~ 61 (91)
T 2cg5_B 8 QRDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVR 61 (91)
T ss_dssp CTTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHH
Confidence 4678999999997543 678899999999999999999944
No 38
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.38 E-value=11 Score=28.94 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=33.1
Q ss_pred CchhhHHHHHHHHHHHhhc------------------CCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 1 METVNEGRIRQTVMEVLKN------------------SDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~------------------~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
|.+-++..|.+.|++||.. -.++.+..-.+...+|++||++++..
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~ 70 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDI 70 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHH
Confidence 5566677777777777653 11356777899999999999999854
No 39
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=61.11 E-value=13 Score=28.37 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=37.2
Q ss_pred CchhhHHHHHHHHHHHhhcC-----------------CchhhhHHHHHHHHHHHhCCCCCCch
Q 013049 1 METVNEGRIRQTVMEVLKNS-----------------DMEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~-----------------~~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
|.+.+..+|++.|.++|... .++++..-.+...++++|||.|+...
T Consensus 1 M~~~t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 1 MTLLTLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred CccccHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 77778889999999998742 13567788999999999999999653
No 40
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=58.47 E-value=3.2 Score=26.54 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=16.5
Q ss_pred cccccccCcccccccccCC
Q 013049 419 TVVCYNCRKKGHVAKHCHN 437 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~ 437 (450)
...|-.|.-.||+..+|..
T Consensus 20 RpYCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCND 38 (42)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CcccccccccCcccccCCc
Confidence 4689999999999999964
No 41
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=50.80 E-value=19 Score=26.26 Aligned_cols=45 Identities=18% Similarity=0.390 Sum_probs=34.0
Q ss_pred CchhhHHHHHHHHHHHhhcC---Cc-------------hhhhHHHHHHHHHHHhCCCCCCc
Q 013049 1 METVNEGRIRQTVMEVLKNS---DM-------------EEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~---~~-------------~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
|.+....+|++.|.++|.-. ++ +++..-.++..++++||++++..
T Consensus 1 M~~~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~ 61 (83)
T 1or5_A 1 MSALTVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDE 61 (83)
T ss_dssp -CCSCHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHH
T ss_pred CchHHHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 67677888888888888632 33 35566789999999999999944
No 42
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=50.31 E-value=27 Score=25.77 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHh-----------------hcCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVL-----------------KNSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l-----------------~~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
....+|++.|.++| .+-.++++..-.+...+|++||++++..
T Consensus 8 ~i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~ 66 (88)
T 2l4b_A 8 EIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDE 66 (88)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHH
Confidence 45566777777777 2233467888899999999999999954
No 43
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=48.00 E-value=19 Score=28.21 Aligned_cols=43 Identities=5% Similarity=0.135 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHhhcC----------------------CchhhhHHHHHHHHHHHhCCCCCCch
Q 013049 4 VNEGRIRQTVMEVLKNS----------------------DMEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~~~----------------------~~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
.+...|.+.|++||.+. .++++..-.+-..+|++|||.+++.+
T Consensus 15 ~~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~ 79 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEV 79 (107)
T ss_dssp TCHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45667777777777542 24678888899999999999999654
No 44
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=45.86 E-value=32 Score=26.49 Aligned_cols=25 Identities=4% Similarity=0.251 Sum_probs=21.3
Q ss_pred chhhhHHHHHHHHHHHhCCCCCCch
Q 013049 22 MEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 22 ~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
++++..-.++..+|++||++++..+
T Consensus 48 lDSL~~veL~~~LE~~fgi~i~~~~ 72 (100)
T 1vku_A 48 FDSIDVIDLVMFFEDEFALRIEDEE 72 (100)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred CchHHHHHHHHHHHHHHCCCCCHHH
Confidence 5677788999999999999999553
No 45
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=44.36 E-value=7.2 Score=25.02 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=17.1
Q ss_pred cccccccCcccccccccCC
Q 013049 419 TVVCYNCRKKGHVAKHCHN 437 (450)
Q Consensus 419 ~~~C~~Cgk~GH~~~~C~~ 437 (450)
...|-.|--.||+..+|..
T Consensus 20 RpYCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCND 38 (42)
T ss_dssp CCEETTTTEESSCGGGCCT
T ss_pred CcccccceecccccccCCc
Confidence 4689999999999999975
No 46
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=42.99 E-value=28 Score=28.56 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhc--CCchhhhHHHHHHHHHHHhCCCCCCchhhHHHHH
Q 013049 8 RIRQTVMEVLKN--SDMEEMTEFKVRVEASERLGIDLSDANHKRFIRG 53 (450)
Q Consensus 8 ~~~~~~~~~l~~--~~~~~~t~~~~r~~~~~~~~~~l~~~~~k~~~~~ 53 (450)
.|.+.|++++.. ..+...|+..|. ++|++||+.|. .+||.|+..
T Consensus 3 ~~ie~L~~~~~~~~~~~~~~t~e~I~-~~E~~Lgi~fP-~dYk~fl~~ 48 (135)
T 2pag_A 3 EVIEQLREANEPVPVPLELPDEDQLV-EIEEQLFINIP-FVFKEFLLT 48 (135)
T ss_dssp HHHHHHHHHCCCCSSCCCCCCHHHHH-HHHHHHTCCCC-HHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCCCHHHHH-HHHHHHCCCCC-HHHHHHHHH
Confidence 577788887755 677888777774 68999999998 568888886
No 47
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=42.83 E-value=47 Score=24.05 Aligned_cols=25 Identities=4% Similarity=0.157 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHHhCCCCCCch
Q 013049 22 MEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 22 ~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
++++..-.+...+|++||++++..+
T Consensus 41 ~DSl~~vel~~~le~~fgi~i~~~~ 65 (84)
T 2kwl_A 41 ADSLDIYELLYLLEEAFDDKIPENE 65 (84)
T ss_dssp SCHHHHHHHHHHHHHHHTCCTTTTG
T ss_pred CCHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456666899999999999998653
No 48
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=42.24 E-value=47 Score=23.58 Aligned_cols=42 Identities=10% Similarity=0.287 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHhhc--------------CCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLKN--------------SDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~~--------------~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+....|.+.+.++|.- --++++..-.+...++++||++++..
T Consensus 5 ~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~ 60 (80)
T 1x3o_A 5 EIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDE 60 (80)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHH
Confidence 4556677777777642 12467778899999999999999844
No 49
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=41.27 E-value=39 Score=24.20 Aligned_cols=42 Identities=12% Similarity=0.317 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHhh--------------cCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLK--------------NSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~--------------~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+....|++.|.++|. +-.++++..-.+...+|++||++++..
T Consensus 7 ~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~ 62 (81)
T 1f80_D 7 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDE 62 (81)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHH
Confidence 445566666666664 122356677789999999999999844
No 50
>2ll0_A Uncharacterized protein; structural genomics, joint center for structural genomics, J unknown function; NMR {Paracoccus denitrificans}
Probab=39.92 E-value=20 Score=28.04 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=35.0
Q ss_pred cCCchhhhHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHhhc
Q 013049 19 NSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLLST 62 (450)
Q Consensus 19 ~~~~~~~t~~~~r~~~~~~~~~~l~~~~~k~~~~~~v~~~~~~~ 62 (450)
.||+++...-.|-+.+..+||++.| -.-||...+.||.+.
T Consensus 57 ~adfee~gdedv~rkv~~DLg~~~s----e~~iR~km~e~l~~A 96 (104)
T 2ll0_A 57 TSDFDEPGDEDVFRKLAADLEGKAD----EETIRAKMVELRATA 96 (104)
T ss_dssp SCCTTCCCTTHHHHHHHHHHTTTCC----HHHHHHHHHHTHHHH
T ss_pred HhccccCCHHHHHHHHHHHhCCccC----HHHHHHHHHHHHHHH
Confidence 5799999888898999999999999 778999999999653
No 51
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=39.88 E-value=10 Score=28.61 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=19.7
Q ss_pred CchhhHHHHHHHHHHHhhc-------CC--------------chhhhHHHHHHHHHHHhCCCCC
Q 013049 1 METVNEGRIRQTVMEVLKN-------SD--------------MEEMTEFKVRVEASERLGIDLS 43 (450)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~-------~~--------------~~~~t~~~~r~~~~~~~~~~l~ 43 (450)
|++..+.+|.+.|+++|.. .+ ++++..-.+...+|++||+.++
T Consensus 1 M~~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~ 64 (92)
T 1fh1_A 1 MADQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIE 64 (92)
T ss_dssp ----CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC------
T ss_pred CchHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccC
Confidence 7777888899999988872 12 2233444566777888888777
No 52
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=39.30 E-value=48 Score=23.51 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhh--------------cCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLK--------------NSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~--------------~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+...+|++.+.++|. +--++++..-.+...++++||++++..
T Consensus 3 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~ 58 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDE 58 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 345667777777764 222457778899999999999999843
No 53
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=36.69 E-value=65 Score=22.95 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHhhc--------------CCchhhhHHHHHHHHHHHhCCCCCCch
Q 013049 4 VNEGRIRQTVMEVLKN--------------SDMEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~~--------------~~~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
+...+|++.+.++|.- --++++..-.+...++++||++++..+
T Consensus 6 ~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~ 62 (81)
T 2lol_A 6 KIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDE 62 (81)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred HHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4556677777776642 113456666899999999999998553
No 54
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=36.01 E-value=61 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHhCCCCCCc
Q 013049 23 EEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 23 ~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+++..-.+-..+|++|||.+++.
T Consensus 56 DSL~~veLv~~lE~~fgI~i~~~ 78 (105)
T 2jq4_A 56 SSFASVQLMLGIEEAFDIEFPDN 78 (105)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCHH
Confidence 56677889999999999999954
No 55
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=35.63 E-value=51 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.337 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHhh--------------cCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLK--------------NSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~--------------~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+...+|++.|.++|. +-.++++..-.+-..+|++|||.+++.
T Consensus 26 ei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~ 81 (101)
T 4dxe_H 26 ENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDE 81 (101)
T ss_dssp THHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHH
Confidence 345667777777663 224567777899999999999999854
No 56
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=33.32 E-value=42 Score=27.79 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCc-hhhhHHHHHHHHHHHhCCCCCCchhhHHHHHH
Q 013049 7 GRIRQTVMEVLKNSDM-EEMTEFKVRVEASERLGIDLSDANHKRFIRGV 54 (450)
Q Consensus 7 ~~~~~~~~~~l~~~~~-~~~t~~~~r~~~~~~~~~~l~~~~~k~~~~~~ 54 (450)
.+|++-|..+...... ..+|+..|. .+|++||+.|. .+||.|+...
T Consensus 5 ~~i~~li~~~~~~~~~~~~~see~I~-~~E~~Lgi~lP-~dYk~fLk~~ 51 (153)
T 2prv_A 5 SKVENFINENKQNAIFTEGASHENIG-RIEENLQCDLP-NSYKWFLEKY 51 (153)
T ss_dssp HHHHHHHHHHGGGCEECCCCCHHHHH-HHHHHHTSCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCCCCHHHHH-HHHHHHCCCCC-HHHHHHHHHh
Confidence 4555555555443333 345666554 56999999998 4688887654
No 57
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=31.25 E-value=68 Score=23.83 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHhhcC------C-----chhhhHHHHHHHHHHHhCCCCCC
Q 013049 4 VNEGRIRQTVMEVLKNS------D-----MEEMTEFKVRVEASERLGIDLSD 44 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~~~------~-----~~~~t~~~~r~~~~~~~~~~l~~ 44 (450)
...+.|.+.+.++|.-. | .+++..-.++..+++.||++++.
T Consensus 14 ~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~ 65 (91)
T 1dny_A 14 AVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPL 65 (91)
T ss_dssp HHHHHHHHHHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 45677888888888742 2 46788899999999999999983
No 58
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=30.90 E-value=79 Score=22.66 Aligned_cols=24 Identities=13% Similarity=0.448 Sum_probs=19.7
Q ss_pred chhhhHHHHHHHHHHHhCCCCCCc
Q 013049 22 MEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 22 ~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
++++..-.+...+|++||++++..
T Consensus 39 ~DSl~~vel~~~le~~fgi~i~~~ 62 (82)
T 2qnw_A 39 ADSLDSVELVMAFEEKFGVSIPDE 62 (82)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHHHHCCcCCHH
Confidence 446667789999999999999844
No 59
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=30.34 E-value=17 Score=33.63 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=13.2
Q ss_pred cccccCHHHHHHHHh
Q 013049 132 KGIALTSEQWRAFSK 146 (450)
Q Consensus 132 kgi~l~~~~~~~l~~ 146 (450)
-||+||.+||+.|..
T Consensus 23 AGI~lT~~qW~~i~p 37 (324)
T 3trk_A 23 AGIKLNDRQWSQIIQ 37 (324)
T ss_dssp TTCCCCHHHHHHHCH
T ss_pred cCccccHHHHHHhhh
Confidence 599999999999943
No 60
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=30.01 E-value=81 Score=21.96 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhc--------------CCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 6 EGRIRQTVMEVLKN--------------SDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 6 ~~~~~~~~~~~l~~--------------~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
...|++.+.++|.- --++++..-.++..+++.||++++..
T Consensus 3 ~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~ 56 (77)
T 2ehs_A 3 EERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDE 56 (77)
T ss_dssp HHHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHH
Confidence 45666777776642 22467888899999999999999844
No 61
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=29.90 E-value=38 Score=24.71 Aligned_cols=46 Identities=13% Similarity=0.344 Sum_probs=35.1
Q ss_pred Cc-hhhHHHHHHHHHHHhhcC-----------------CchhhhHHHHHHHHHHHhCCCCCCch
Q 013049 1 ME-TVNEGRIRQTVMEVLKNS-----------------DMEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 1 ~~-~~~~~~~~~~~~~~l~~~-----------------~~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
|+ +.+..+|++.|.++|.-. .++++..-.+...+|++||++++..+
T Consensus 1 M~~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~ 64 (86)
T 1af8_A 1 MATLLTTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDV 64 (86)
T ss_dssp CCCSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTT
T ss_pred CchHHHHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHH
Confidence 66 567788888888887531 13466778999999999999998653
No 62
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=29.78 E-value=80 Score=22.43 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHhhc--------------CCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLKN--------------SDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~~--------------~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
....+|.+.+.++|.- --++++..-.+...++++||++++..
T Consensus 7 ~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~ 62 (82)
T 2cnr_A 7 EIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDD 62 (82)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGG
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHH
Confidence 4455666666666642 12356677799999999999999855
No 63
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=29.31 E-value=81 Score=23.18 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=32.1
Q ss_pred eecCceeE-eeEeEEecCCcccCCCcccccCHHHHHHHHhhhhHHHHHHHHhccc
Q 013049 108 EFKGRAFV-SIREYFRRDGKLVPTAKGIALTSEQWRAFSKSLPAIDEAVVKMQSK 161 (450)
Q Consensus 108 ~~~g~~~~-~ir~~~~~~~~~~p~~kgi~l~~~~~~~l~~~~~~i~~~~~~~~~~ 161 (450)
=|+|+.|| +|..|=.+.|+.++-+++ . ..-...+.+|+..|..+...
T Consensus 19 lF~Gri~I~g~G~FeFd~GkillP~~~----d---~~~~~~~sEIN~~I~~L~~e 66 (78)
T 2jro_A 19 FLTGVIWVKDLGRLEFEKGRFLLPRKS----L---PKVKQAILELNELIEAQNHQ 66 (78)
T ss_dssp HCSEEEEETTTEEEEEETTEECCCSSC----C---HHHHHHHHHHHHHHHHHHCC
T ss_pred HccceEEEEecccEEEcCCEEeCCccc----c---HHHHHHHHHHHHHHHHHHHH
Confidence 38999998 466766688986664332 2 23456677888888776654
No 64
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=29.12 E-value=33 Score=28.63 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHhCCCCCCchhhHHHHHH
Q 013049 24 EMTEFKVRVEASERLGIDLSDANHKRFIRGV 54 (450)
Q Consensus 24 ~~t~~~~r~~~~~~~~~~l~~~~~k~~~~~~ 54 (450)
.+|+..|. .+|++||+.|. .+||.|+...
T Consensus 26 ~~s~~~I~-~~E~~Lgi~lP-~~Yk~fL~~~ 54 (160)
T 2icg_A 26 TGTPELIK-IYQDALGNEFP-ETYKLFLEKY 54 (160)
T ss_dssp CCCHHHHH-HHHHHHTCCCC-HHHHHHHHHT
T ss_pred CCCHHHHH-HHHHHhCCCCC-HHHHHHHHHh
Confidence 55666664 56999999998 5699988864
No 65
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=29.04 E-value=80 Score=24.07 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=52.3
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHcCC----CcchHHHHHHHHhhCCCCcHHHHHHHhcCCCCCHHHHHHH
Q 013049 296 SQVKKYIEFQMFDEKSVFEQALELNKIADSIVAAGM----MIYENFHVSVILSKLPLSWKDFCIKLMRMEYLTFTMLMDH 371 (450)
Q Consensus 296 ~l~~~l~~~k~~~~~sv~e~i~~~~~l~~~L~~~g~----~i~d~~~~~~iL~sLp~~~~~~~~~l~~~~~ltl~el~~~ 371 (450)
..+++|..+.+.+.....+.+.++..++..--.-++ .|-+-.....||..||.+....+..- .+-|-+++...
T Consensus 7 ~~rq~FR~f~y~e~~gp~eal~~L~eLc~~WLrPe~htKEQileLLVLEQFL~ilP~e~q~wv~~~---~p~s~~eav~l 83 (93)
T 3lhr_A 7 IFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDH---HPENGEEAVTV 83 (93)
T ss_dssp HHHHHHHHCCGGGSSSHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT---CCSSHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHh---CCCCHHHHHHH
Confidence 346788889999999999999999999998755443 23455667788899998876655533 33355555544
Q ss_pred H
Q 013049 372 I 372 (450)
Q Consensus 372 L 372 (450)
+
T Consensus 84 ~ 84 (93)
T 3lhr_A 84 L 84 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=28.63 E-value=48 Score=26.63 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=21.8
Q ss_pred eeeEEeeecCceeEeeEeEEecCCc
Q 013049 102 RTVAIQEFKGRAFVSIREYFRRDGK 126 (450)
Q Consensus 102 ~~~~~~~~~g~~~~~ir~~~~~~~~ 126 (450)
..+.+=++++-.-+.+|+||..||+
T Consensus 108 ~~~~~f~v~dGkI~~~r~Y~d~~~~ 132 (134)
T 3dmc_A 108 RVAVSFDVRGDKICSYREYFGSDGK 132 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEECSCSB
T ss_pred cEEEEEEEECCEEEEEEEEECCCCC
Confidence 3577888999999999999999986
No 67
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=25.75 E-value=86 Score=19.87 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=17.8
Q ss_pred CCchhhhHHHHHHHHHHHhCCCCC
Q 013049 20 SDMEEMTEFKVRVEASERLGIDLS 43 (450)
Q Consensus 20 ~~~~~~t~~~~r~~~~~~~~~~l~ 43 (450)
+.|.-+-...+=+.++++|||+-.
T Consensus 11 ~~lTvlE~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 11 EKLTVSELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCCSC
T ss_pred HhCcHHHHHHHHHHHHHHHCCCcc
Confidence 445555556778999999999754
No 68
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=25.57 E-value=1e+02 Score=22.00 Aligned_cols=42 Identities=12% Similarity=0.268 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHhh--------------cCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLK--------------NSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~--------------~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+...+|++.|.++|. +-.++++..-.+...+|++||+.++..
T Consensus 5 ~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~ 60 (81)
T 3gzm_A 5 STFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHH
Confidence 344555555656553 223456667789999999999999855
No 69
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=24.77 E-value=35 Score=27.04 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhc-------------CCchhhhHHHHHHHHHHHhCCCCCCch
Q 013049 6 EGRIRQTVMEVLKN-------------SDMEEMTEFKVRVEASERLGIDLSDAN 46 (450)
Q Consensus 6 ~~~~~~~~~~~l~~-------------~~~~~~t~~~~r~~~~~~~~~~l~~~~ 46 (450)
+..|.+.|++||.+ -.++++..-.+-..+|++|||.+++.+
T Consensus 28 ~~ei~~~v~~il~e~l~I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~ 81 (113)
T 2cgq_A 28 EEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRD 81 (113)
T ss_dssp HHHHHHHHHHHHTCCSCCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45677777777754 345688888899999999999999553
No 70
>1ojj_A Endoglucanase I; hydrolase, cellulose degradation, glycosynthase; HET: BGC GAL GLC NAG; 1.4A {Humicola insolens} SCOP: b.29.1.10 PDB: 1oji_A* 1ojk_A* 1dym_A* 1a39_A* 2a39_A*
Probab=24.01 E-value=69 Score=31.03 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=29.9
Q ss_pred CceeeEEeeecC---ceeEeeEeEEecCCcccCCC----ccc----ccCHH
Q 013049 100 NKRTVAIQEFKG---RAFVSIREYFRRDGKLVPTA----KGI----ALTSE 139 (450)
Q Consensus 100 ~~~~~~~~~~~g---~~~~~ir~~~~~~~~~~p~~----kgi----~l~~~ 139 (450)
.+++-.|..|-+ -.|..||-||..+|+..|.. .|+ |||.+
T Consensus 263 ~k~fTVVTQFit~~~G~L~EIrR~YVQ~GkvI~n~~~~~~g~~~~nSItd~ 313 (402)
T 1ojj_A 263 LKPFTVVTQFLANRRGKLEKIHRFYVQDGKVIESFYTNKEGVPYTNMIDDE 313 (402)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEEEETTEEECCCCCCCTTSCCCSSBCHH
T ss_pred CCCeEEEeeeecCCCCCcceeeEEEEECCEEEeCCCcccCCCCCCCccCHH
Confidence 556666778965 48999999999999987654 243 77765
No 71
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=23.14 E-value=94 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhh--------------cCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 5 NEGRIRQTVMEVLK--------------NSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 5 ~~~~~~~~~~~~l~--------------~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
...+|++.|.++|. +-.++++..-.+...+|++||++++..
T Consensus 23 i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~ 77 (97)
T 3ejb_A 23 IEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDE 77 (97)
T ss_dssp HHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHH
Confidence 34555566666553 223456777889999999999999854
No 72
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=22.19 E-value=1.3e+02 Score=22.11 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhhcCC-----------chhhhHHHHHHHHHHHhCCCCCC
Q 013049 4 VNEGRIRQTVMEVLKNSD-----------MEEMTEFKVRVEASERLGIDLSD 44 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~-----------~~~~t~~~~r~~~~~~~~~~l~~ 44 (450)
.....|.+.+.++|.-.+ .+++..-.+...+++.||++|+.
T Consensus 16 ~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~ 67 (93)
T 4i4d_A 16 ALERDIAAIWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSI 67 (93)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCH
Confidence 445667777777776432 57788899999999999999993
No 73
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=21.98 E-value=48 Score=25.34 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=52.8
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHcC----CCcchHHHHHHHHhhCCCCcHHHHHHHhcCCCCCHHHHHHHH
Q 013049 297 QVKKYIEFQMFDEKSVFEQALELNKIADSIVAAG----MMIYENFHVSVILSKLPLSWKDFCIKLMRMEYLTFTMLMDHI 372 (450)
Q Consensus 297 l~~~l~~~k~~~~~sv~e~i~~~~~l~~~L~~~g----~~i~d~~~~~~iL~sLp~~~~~~~~~l~~~~~ltl~el~~~L 372 (450)
.+++|..+.+.+.....+-+.++..++.+--.-. ..|-|-.....||..||.+....+..- .+-+-++++..+
T Consensus 9 ~rq~FR~f~y~e~~gPreaL~rLreLc~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~~~---~P~s~eeav~lv 85 (94)
T 2fi2_A 9 ARLRFRCFHYEEATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQ---RPGSPEEAAALV 85 (94)
T ss_dssp HHHHHHSCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHSCHHHHHHHHHH---CCCSHHHHHHHH
T ss_pred HHHhcccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCcHHHHHHHHhc---CCCcHHHHHHHH
Confidence 3567888999998899999999999998864432 345567777888999999887776633 233455555443
No 74
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=21.69 E-value=25 Score=26.27 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 013049 27 EFKVRVEASERLGIDLSD 44 (450)
Q Consensus 27 ~~~~r~~~~~~~~~~l~~ 44 (450)
-..+|.-||.+||+||+.
T Consensus 15 L~~Lk~LLe~Rl~i~L~~ 32 (89)
T 2juo_A 15 IGNLKKLLEPRLQCSLDA 32 (89)
T ss_dssp GGGHHHHSHHHHCSCCSS
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 457899999999999993
No 75
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=21.60 E-value=1.1e+02 Score=21.70 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhhcC---C-----------chhhhHHHHHHHHHHHhCCCCCCc
Q 013049 5 NEGRIRQTVMEVLKNS---D-----------MEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 5 ~~~~~~~~~~~~l~~~---~-----------~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
....|.+.+.++|.-. + ++++..-.+...++++||++++..
T Consensus 5 i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~ 59 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED 59 (82)
T ss_dssp HHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGG
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 4455666666666422 2 456778899999999999999855
No 76
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=21.07 E-value=1.5e+02 Score=22.42 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHhh--------------cCCchhhhHHHHHHHHHHHhCCCCCCc
Q 013049 4 VNEGRIRQTVMEVLK--------------NSDMEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 4 ~~~~~~~~~~~~~l~--------------~~~~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+...+|++.|.++|. +-.++++..-.+...+|++|||.++..
T Consensus 3 ~i~~~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~ 58 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLE 58 (101)
T ss_dssp CHHHHHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 345667777777663 223457778899999999999999854
No 77
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=20.55 E-value=1.7e+02 Score=22.63 Aligned_cols=23 Identities=13% Similarity=0.557 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHHHhCCCCCCc
Q 013049 23 EEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 23 ~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
+++..-.+...+|+.||++++..
T Consensus 40 DSL~~vel~~~lE~~fgi~i~~~ 62 (115)
T 1klp_A 40 DSLSMVEIAVQTEDKYGVKIPDE 62 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCHH
Confidence 46677799999999999999954
No 78
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=20.40 E-value=1.3e+02 Score=22.07 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhcC-----C---------chhhhHHHHHHHHHHHhCCCCCCc
Q 013049 5 NEGRIRQTVMEVLKNS-----D---------MEEMTEFKVRVEASERLGIDLSDA 45 (450)
Q Consensus 5 ~~~~~~~~~~~~l~~~-----~---------~~~~t~~~~r~~~~~~~~~~l~~~ 45 (450)
....|.+.+.++|... + ++++..-.++..+++.||++++..
T Consensus 21 ~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~ 75 (95)
T 2ju1_A 21 LVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPST 75 (95)
T ss_dssp HHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTT
T ss_pred HHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChh
Confidence 3455667777777621 1 567788899999999999999854
No 79
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=20.34 E-value=51 Score=25.42 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHcC----CCcchHHHHHHHHhhCCCCcHHHHHHHhcCCCCCHHHHHHHH
Q 013049 297 QVKKYIEFQMFDEKSVFEQALELNKIADSIVAAG----MMIYENFHVSVILSKLPLSWKDFCIKLMRMEYLTFTMLMDHI 372 (450)
Q Consensus 297 l~~~l~~~k~~~~~sv~e~i~~~~~l~~~L~~~g----~~i~d~~~~~~iL~sLp~~~~~~~~~l~~~~~ltl~el~~~L 372 (450)
.++.|..|.+.+.....+-+.++..++..--.-. ..|-|-.....||..||.+....+. ...+-+-++++..+
T Consensus 11 ~rq~FR~f~y~e~~gPreaL~rLreLC~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~---~~~P~s~eeav~lv 87 (98)
T 1y7q_A 11 CRQSFRRFCYQEVSGPQEALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTILPEEIQARVR---HRCLMSSKEIVTLV 87 (98)
T ss_dssp HHHHHHTCCSCSCCSSHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHSCTHHHHHHH---TSCCCCHHHHHHHH
T ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHh---ccCCCcHHHHHHHH
Confidence 4577888899988889999999999998864432 3455667778889999998877644 33444666665554
Done!