BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013050
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 223/434 (51%), Gaps = 24/434 (5%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 65
V I+ G I+S ++E +S G +D + PG++DVH H ++PGRTEWEGF S
Sbjct: 26 VAIRNG-IVSAITEPG-SISSDDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFASGS 83
Query: 66 XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
DMPLNS+P TI+ E L K A ++ VD FWGGLVP N L
Sbjct: 84 KSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NIDHL 140
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK--GSERH 183
+ L + GV+G K+FM G +DF ++ + +G+ +A L VHAE + +
Sbjct: 141 QDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTT 200
Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
+ +E+ L + YS + RP E A+ +L A+ T +HI H
Sbjct: 201 IAIEEQRLTVKDYS---EARPIVSELEAVERILRFAQLT-------CCPIHICHVSSRKV 250
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
+AK G +++VETCPHYL FS +E + KCAPP+R+ E LW+ LM G
Sbjct: 251 LKRIK-QAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAG 309
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWW 362
ID++SSDHSP++P++K + WGGI+ Q L V + G K + L Q+
Sbjct: 310 EIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLL 367
Query: 363 SERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 421
S PAK G KG I +G A + + + L N ++ +HP IS Y+G+R GK
Sbjct: 368 STEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTL-NASDLYYRHP-ISPYVGQRFRGK 425
Query: 422 VLATISRGNLVYKE 435
V TI +G VY++
Sbjct: 426 VKHTICQGKHVYQD 439
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 200/423 (47%), Gaps = 32/423 (7%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
+V D V+ PG +D H H+ +PGR+ WEG+ + I+ PLN P+T+
Sbjct: 62 EVXDASGLVVSPGXVDAHTHISEPGRSHWEGYETGTRAAAKGGITTXIEXPLNQLPATVD 121
Query: 90 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI---- 145
+++LK DAA+ ++ +D GGLV +YN L L GV+G F+ G
Sbjct: 122 RASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFXCFVATCGDRGID 178
Query: 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYL 200
NDF N +G L +P+LVH E E G E K E + Y+
Sbjct: 179 NDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYV 232
Query: 201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 260
+RP E AIR +L +AK G LH+ H A+ G IT
Sbjct: 233 ASRPVFTEVEAIRRVLYLAK-------VAGCRLHVCHVSSPEGVEEV-TRARQEGQDITC 284
Query: 261 ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320
E+CPHY ++ + T KC+PPIRD N++ WE L +G ID L SDHSP PE K
Sbjct: 285 ESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGXWEKLFNGEIDCLVSDHSPCPPEXK 344
Query: 321 LLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIA 379
GN KAWGGI+ LQ V + +K G +L + A + G KG IA
Sbjct: 345 ---AGNIXKAWGGIAGLQSCXDVXFDEAVQKRGXSLPXFGKLXATNAADIFGLQQKGRIA 401
Query: 380 IGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
G AD V +P + + L ND + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 402 PGKDADFVFIQPNSSYVLTNDD-LEYRH-KVSPYVGRTIGARITKTILRGDVIYDIEQGF 459
Query: 440 PAA 442
P A
Sbjct: 460 PVA 462
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 196/437 (44%), Gaps = 31/437 (7%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RTEWEGFPSXXX 66
+K+G + +I ++ S+T +D G +MPG++D H H+ D + + F
Sbjct: 24 VKDGKVAAISADTSDVEASRT---IDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELDSE 80
Query: 67 XXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALE 126
+I+MP+ P+T L+ K A + R+ VD +GG VP N +
Sbjct: 81 SAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQ-RLKVDFALYGGGVPGNL---PEIR 136
Query: 127 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KGSERH 183
+ +AG +G S M S F + + E +A ++VHAE E + ++
Sbjct: 137 KMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQ 196
Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
+K + + Y ++P E AI+ L + K+ G L ++H
Sbjct: 197 IK----AAGGKDMAAYEASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNPDG 245
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
+A++ G + E+ P YL + ++ K APP+R A +LWE L +G
Sbjct: 246 VELIH-QAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENG 304
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWW 362
ID L SDH E K + KA G L+ LP+ + G G ++LE+L
Sbjct: 305 LIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVM 364
Query: 363 SERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDH--PVHMKHPSISAYLGRRLS 419
E+PAKL G KG + +G+ ADL++ + + + ++D +H P + G ++
Sbjct: 365 CEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSP----FDGMPVT 420
Query: 420 GKVLATISRGNLVYKEG 436
G + T+ RG +V ++G
Sbjct: 421 GAPVLTMVRGTVVAEKG 437
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
+++D ++ PG ID+H HL DPG+T E S ++ MP N++P +
Sbjct: 44 EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 102
Query: 90 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 148
T + + ++ VG L + + A LK C + +D
Sbjct: 103 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 155
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 206
P+ ++S +++ L + ++ P++ H E +K L ++ S L +R P
Sbjct: 156 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 208
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 266
EE I +A+ T G H+HI H K G IT E P++
Sbjct: 209 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 260
Query: 267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 326
L F+ E+ + + PP+R ++ L E + G ID ++DH+P K L E
Sbjct: 261 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVEF- 319
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 386
A GI LQ LP RK ++L++L ++ PA++ G V G + +G+ AD+
Sbjct: 320 ---AMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADI 375
Query: 387 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
+++P E+ L+ + ++ + G+ L GKV+ TI G +VYK+
Sbjct: 376 TIFDPNKEWILNEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 422
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
+++D ++ PG ID+H HL DPG+T E S ++ MP N++P +
Sbjct: 89 EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 147
Query: 90 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 148
T + + ++ VG L + + A LK C + +D
Sbjct: 148 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 200
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 206
P+ ++S +++ L + ++ P++ H E +K L ++ S L +R P
Sbjct: 201 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 253
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 266
EE I +A+ T G H+HI H K G IT E P++
Sbjct: 254 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 305
Query: 267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 326
L F+ E+ + + PP+R ++ L E + G ID ++DH+P K L E
Sbjct: 306 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVE-- 363
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 386
A GI LQ LP RK ++L++L ++ PA++ G V G + +G+ AD+
Sbjct: 364 --FAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADI 420
Query: 387 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
+++P E+ L+ + ++ + G+ L GKV+ TI G +VYK+
Sbjct: 421 TIFDPNKEWILNEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 34/375 (9%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
+V+D +I PGL+DVH HL +PG E + + MP N+ P
Sbjct: 42 EVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDC 100
Query: 90 TETLKLKVDAAEKRIYVDVGFWGGL-VPENAYNASALEALLNAGVLGLKSFMCPSGINDF 148
E ++ + +++ +V+V +G + V + + E L G +
Sbjct: 101 REHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTD-------DGV 153
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRP 204
+ +AS + + A+ ++ H E + KG K S L P
Sbjct: 154 GVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKF--------SEKHGLNGIP 205
Query: 205 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCP 264
E I + +A+ A H H+ H +AK G +T E P
Sbjct: 206 SVCESVHIARDILLAE-------AADCHYHVCHVSTKGSVRVIR-DAKRAGIKVTAEVTP 257
Query: 265 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 324
H+L ++IP D FK PP+R + E L E L+DG IDM+++DH+P E K
Sbjct: 258 HHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEK---A 314
Query: 325 GNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVSKGAIAIGNH 383
+A GI+ + P+ ++ K G +TLEQL + +E+PA G + G + G
Sbjct: 315 QGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRT 373
Query: 384 ADLVVWEPEAEFELD 398
AD+ + + E E E+D
Sbjct: 374 ADITIIDLEQEEEID 388
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 187/419 (44%), Gaps = 36/419 (8%)
Query: 32 VDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
+D ++PG ID H HLD P G + F + ++D L T
Sbjct: 43 IDATGCYVIPGGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCL-----TKK 97
Query: 90 TETLKLKV----DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSG 144
E+LK + + A + +D GF + N LE+++++ G+ LK FM
Sbjct: 98 GESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYK- 156
Query: 145 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTR 203
N F + + K +++ + LV E G + + + Y TR
Sbjct: 157 -NVFQADDETLFK---TLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTR 212
Query: 204 PPSWE-EAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVET 262
PP E EA R + A G+ L++VH EA+ G ++ ET
Sbjct: 213 PPEAEGEATGRAIALTA--------LAGSQLYVVHVSCASAVQRIA-EAREKGWNVYGET 263
Query: 263 CPHYLAF--SAEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPE 318
CP YLA S + PD + ++ +PP+R+ N+E LW AL +G + + SDH P
Sbjct: 264 CPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRG 323
Query: 319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKG 376
K L G+F K G ++ L + +S G + G ++L Q S + AKL G KG
Sbjct: 324 QKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRKG 383
Query: 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
IA+G+ AD+V+++P + L + H + + + G + G+V++ +SRG+ V ++
Sbjct: 384 TIAVGSDADIVIFDPHVKRTLSVE--THHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRD 440
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 185/418 (44%), Gaps = 32/418 (7%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPST 87
+V+D ++PG ID H HLD P G + F + ++D L S +
Sbjct: 41 EVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGES 100
Query: 88 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGIN 146
+ + A K + +D GF + N + LE+++N G+ L FM +
Sbjct: 101 LHSAIATWHEKARGKAV-IDYGFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNV- 158
Query: 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK--LEDDTLDTRSYSTYLKTRP 204
M + + + L + VHAE + K L + D Y Y TRP
Sbjct: 159 --LMADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDP-IYHAY--TRP 213
Query: 205 PSWE-EAAIREL-LTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVET 262
P E EA R + LT D A L++VH EA+ G ++ ET
Sbjct: 214 PEAEGEATGRAIALTALAD---------AQLYVVHVSCADAVRRIA-EAREKGWNVYGET 263
Query: 263 CPHYLAF--SAEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPE 318
CP YL +A E PD + ++ +PP+R+ N++ LW AL +G + + SDH P
Sbjct: 264 CPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSG 323
Query: 319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKG 376
K L +F K G ++ + + +S G RK ++L Q S + AKL G KG
Sbjct: 324 QKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKG 383
Query: 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
IA+G+ AD+V+++P + + + H + + + G ++ G V++ +SRG V +
Sbjct: 384 TIAVGSDADIVLFDPTVQRTISVE--THHMNVDYNPFEGMQVHGDVISVLSRGAFVVR 439
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 184/443 (41%), Gaps = 40/443 (9%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXX 65
IK+G I I + K +V+D + PG ID H HLD P G + F S
Sbjct: 23 IKDGKIAMIGQNLE----EKGAEVIDAKGCYVFPGGIDPHTHLDMPLGGTVTKDDFESGT 78
Query: 66 XXXXXXXXXXLIDMPLNS--DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
+ID L + +P + ET K A + +D GF + +
Sbjct: 79 IAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNK---ANGKAVIDYGFH---LMISEITDD 132
Query: 124 ALE----ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 179
LE L G+ L FM N F + + ++LA + LV E G
Sbjct: 133 VLEELPKVLEEEGITSLXVFMAYK--NVFQADDGTLY---CTLLAAKELGALVMVHAENG 187
Query: 180 SERHVKLEDDTLDTRSYSTY-LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHX 238
+ D + Y TRPP E A + + G+ L++VH
Sbjct: 188 DVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTE-------LAGSQLYVVHV 240
Query: 239 XXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDGD-TRFKCAPPIRDAANKEK 295
EA+ G + ETCP YL S E P+ + ++ +PP+R+ ++E
Sbjct: 241 TCAQAVEKIA-EARNKGLDVWGETCPQYLVLDQSYLEKPNFEGAKYVWSPPLREKWHQEV 299
Query: 296 LWEALMDGHIDMLSSDH-SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-V 353
LW AL +G + L SD S K L G+F K G ++ + + +S G K G +
Sbjct: 300 LWNALKNGQLQTLGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRVSILFSEGVKKGRI 359
Query: 354 TLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
TL Q S R AKL G KG I +G+ ADLV+++P E + + H +A
Sbjct: 360 TLNQFVDIVSTRIAKLFGLFPKKGTIVVGSDADLVIFDPNIERVISAE--THHMAVDYNA 417
Query: 413 YLGRRLSGKVLATISRGNLVYKE 435
+ G +++G+ ++ + RG V ++
Sbjct: 418 FEGMKVTGEPVSVLCRGEFVVRD 440
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 167/394 (42%), Gaps = 37/394 (9%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 65
V I EG I+S+ + QVVD + PG +D+HAHL +PG E S
Sbjct: 21 VLIGEGRILSL-------EGGEAKQVVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGL 73
Query: 66 XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
L+ P N+ P + E ++ + A+ L + A+AL
Sbjct: 74 LAAVRGGYTDLVSXP-NTKPPVDTPEAVRALKEKAK-----------ALGLARLHPAAAL 121
Query: 126 EALLNAGVLGLKSFMCPSG---INDFPMTN--ASHIKEGLSVLARYKRPLLVHAEMEKGS 180
L + +G + D TN A + GL A P+ VHAE + G
Sbjct: 122 TEKQEGKTLTPAGLLREAGAVLLTDDGRTNEDAGVLAAGLLXAAPLGLPVAVHAE-DAGL 180
Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXX 240
R+ D L + L PP E A I L V + PA LH+ H
Sbjct: 181 RRNGVXNDGPL---ADLLGLPGNPPEAEAARIARDLEVLRYALRRSPAT-PRLHVQHLST 236
Query: 241 XXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL 300
EAK G +T E PH+L + E + D FK APP+R ++E L E L
Sbjct: 237 KRGLELVR-EAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGL 295
Query: 301 MDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQL 358
+DG +D +++DH+P T+ E E + L+A GI SL+ P+ ++ K G L++L
Sbjct: 296 LDGTLDAIATDHAPHTLAE----KEKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRL 351
Query: 359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 392
+++ P ++ G + + G A LV+ P+
Sbjct: 352 VELFTDGPRRVLG-LPPLHLEEGAEASLVLLSPK 384
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 21/320 (6%)
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
LE L + G+ FM G+N M + + + L + ++VHAE G
Sbjct: 136 LEVLPDLGITSFXVFMAYRGMN---MIDDVTLLKTLDKAVKTGSLVMVHAE--NGDAADY 190
Query: 185 KLEDDTLDTRSYSTY-LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
+ + ++ Y +RPP E A L +A+ A ++IVH
Sbjct: 191 LRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN-------APIYIVHVTCEES 243
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEI--PDGD-TRFKCAPPIRDAANKEKLWEAL 300
M AK+ G ETC HYL + E++ PD + ++ PP R + + LW AL
Sbjct: 244 LEEV-MRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNAL 302
Query: 301 MDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 359
+G + +SSDH K +F G ++ L + + + ++L Q
Sbjct: 303 RNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFV 362
Query: 360 SWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 418
+ RPAK+ G KG IA+G+ AD+V+W+PEAE + + S+Y G ++
Sbjct: 363 ELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVI--EQTAMHNAMDYSSYEGHKV 420
Query: 419 SGKVLATISRGNLVYKEGNH 438
G + RG ++ EG++
Sbjct: 421 KGVPKTVLLRGKVIVDEGSY 440
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 173/433 (39%), Gaps = 42/433 (9%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXX 69
+G +I ++ P N ++D + PG +DVH HL +PG E +
Sbjct: 23 DGKVIKQIAPAIEPSNGV--DIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGTKAAA 80
Query: 70 XXXXXXLIDMPLNSDPSTISTETL----KLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
+ P N+ P S E KL D A+ R+ + + +
Sbjct: 81 RGGFTTVCPXP-NTRPVPDSVEHFEALQKLIDDNAQVRV---LPYASITTRQLGKELVDF 136
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKGSER 182
AL+ G G+ + AS EG A+ + ++ H E + G
Sbjct: 137 PALVKEGAFAFTD----DGVG---VQTASXXYEGXIEAAKVNKAIVAHCEDNSLIYGGAX 189
Query: 183 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXX 242
H RS + P E I + +A+ A G H H+ H
Sbjct: 190 HEG-------KRSKELGIPGIPNICESVQIARDVLLAE-------AAGCHYHVCHVSTKE 235
Query: 243 XXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
+AK G +T E PH+L + ++IP + +K PP+R ++E L E L+D
Sbjct: 236 SVRVI-RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKXNPPLRSTEDREALLEGLLD 294
Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASW 361
G ID +++DH+P + K KA GI + P+ +++ K G TL+QL +
Sbjct: 295 GTIDCIATDHAPHARDEKAQPXE---KAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDY 351
Query: 362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 421
+ +P + + G + +ADL + + ++E E+ + + + ++G ++ G
Sbjct: 352 LTIKPCETF-NLEYGTLKENGYADLTIIDLDSEQEIKGED--FLSKADNTPFIGYKVYGN 408
Query: 422 VLATISRGNLVYK 434
+ T G + ++
Sbjct: 409 PILTXVEGEVKFE 421
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/454 (24%), Positives = 178/454 (39%), Gaps = 51/454 (11%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEG 60
K V+++ G I+ I N + +D +MPG ID H HL+ P G +
Sbjct: 18 KADVKVEGGRIVEI------GPNLSGAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDD 71
Query: 61 FPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF------WGGL 114
F S ++D L S P E L + D R D F WG
Sbjct: 72 FESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMW-DNKSTRANCDYSFHMAITWWG-- 127
Query: 115 VPENAYNASALEALL-NAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPL 170
E +N +E ++ + G+ FM G ++D M ++ L L
Sbjct: 128 --EQVFNE--METIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGALP------ 177
Query: 171 LVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 229
LVHAE + ++ KL + Y +RP E A + +A
Sbjct: 178 LVHAENGDVVAQLQAKLLAEGNSGPEAHAY--SRPAEVEGEAANRAIMIAD-------MA 228
Query: 230 GAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAP 285
G ++IVH A+ G + E +L E D D R +P
Sbjct: 229 GCPVYIVHTSCEQAHEAIR-RARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSP 287
Query: 286 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 345
P R+ +++ LW L G + ++++DH E K G+F + G L+ +P+ W
Sbjct: 288 PFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLW 347
Query: 346 SYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPV 403
+YG G +T+ + + S AK+ KGAI +G ADLVVW+P+ +
Sbjct: 348 TYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAK--T 405
Query: 404 HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
+ + G+ ++G T++RG + +EG
Sbjct: 406 QQSAIDYNVFEGKTVTGLPRFTLTRGVVSIEEGT 439
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 171/424 (40%), Gaps = 40/424 (9%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEW--EGFPSXXXXXXXXXXXXLIDM--PLNSDP 85
+V+D + PG ID H H+ P + + + I+M P +D
Sbjct: 41 EVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDD 100
Query: 86 STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-- 143
+ E +L AE Y D F + + L ++ G+ F+
Sbjct: 101 AL---EGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFXIFLSYKNF 157
Query: 144 -GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 202
G++D M + + L V+ + H E +E +L+ L
Sbjct: 158 FGVDDGEMYQTLRLAKELGVI------VTAHCE---NAELVGRLQQKLLSEGKTG----- 203
Query: 203 RPPSWEEAAIRELLTVAKDTR--TDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 260
P W E + E + R T GA ++VH M AK G I +
Sbjct: 204 --PEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAA-MAAKARGVPIYI 260
Query: 261 ETC-PHYL--AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 317
E+ PH+L AE ++ +PP+RD N++ LW+AL G ID + +DH P
Sbjct: 261 ESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDT 320
Query: 318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SK 375
E KLL + F GI +++ + + ++YG G + + + S + AKL G K
Sbjct: 321 EQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRK 380
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS--ISAYLGRRLSGKVLATISRGNLVY 433
G IA+G+ ADLVV++P+ + V +H + + + G + G+ RG +
Sbjct: 381 GTIAVGSDADLVVYDPQYRGTIS----VKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAV 436
Query: 434 KEGN 437
++G
Sbjct: 437 RDGQ 440
>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From
Porphyromonas Gingivalis
Length = 452
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 103/436 (23%), Positives = 179/436 (41%), Gaps = 29/436 (6%)
Query: 10 EGNIISIVSEEDWPR--NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXX 67
+G IS + E + P N +V++ + PG ID H +PG T S
Sbjct: 27 DGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASESRA 86
Query: 68 XXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 127
D P + P+T L+ + A+ + + GF+ G +N ++
Sbjct: 87 AVAGGVTSFXDXPNTNPPTTXWERLLEKRQIGADT-AWANYGFFFGGTNDNIDEIKRVDK 145
Query: 128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KGSERHV 184
L V GL F+ S N + N +++ + + H E E + ++ H
Sbjct: 146 HL---VPGLXLFLGSSTGNXL-VDNKETLEK---IFGECDLLIATHCEKEEIIRANKEHY 198
Query: 185 KLE-DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
K + + LD + +++ + +A E + +A+ A LHI+H
Sbjct: 199 KAKYGNDLDIH-FHPLIRSEEACYRSSA--EAVELAERX-------NARLHILHLSTEKE 248
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
+ T IT E C H+L FS + R K P I+ +++E L A+ +G
Sbjct: 249 LSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAAVRNG 308
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
ID++++DH+P + K EG+ L+A G +Q L + ++E++ S +
Sbjct: 309 RIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIVSKTA 365
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
PA L +G I G +ADLV+ +P + + D+ + + S + G S V
Sbjct: 366 HIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADNILSL--CGWSPFEGFTFSHSVA 423
Query: 424 ATISRGNLVYKEGNHA 439
T G L Y +G A
Sbjct: 424 YTFVNGCLAYAKGRLA 439
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 116/480 (24%), Positives = 183/480 (38%), Gaps = 91/480 (18%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWEGFPSXXXXXXXXXXXXLIDMPLN 82
+V+D A I PG ID H H+D+P + T S
Sbjct: 44 EVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSK 103
Query: 83 SDPSTISTETLKLKVDA-AEKRIYVDVGFWGGLVPENAYNASALEAL---LNA-----GV 133
PS ++ E++KL VD +E+ +Y D G L + A E L L A GV
Sbjct: 104 KGPSALA-ESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGV 162
Query: 134 LGLKSFMCPSG--INDFPMTNASHI--KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 189
+ FM G I+D+ + +A + K G + + + +V +E LE+
Sbjct: 163 SSVXMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEA-------LEEQ 215
Query: 190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXM 249
L Y + +RP E A +T+A T D P H+
Sbjct: 216 GLTDAYY--HGVSRPSIVEGEATNRAITLA--TTMDTPILFVHV------SSPQAAEVIK 265
Query: 250 EAKTNGDSITVETCPHYL-------------------------AFSAEEIPDGDTRFK-- 282
+A+T G + ETCP Y + S + D RF
Sbjct: 266 QAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGS 325
Query: 283 ---CAPPIRDAANKEKLWEALMDGHIDMLSSDH--------SPTVPELKLLD-----EGN 326
C+PPIR ++ +W+ + +G ++ SDH + T + + D G
Sbjct: 326 KYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGE 385
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAKLAGQV-SKGAIAIG-N 382
F G+ + +P+ + YG G ++ +L PAK+ G KG+I G +
Sbjct: 386 FRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVS 445
Query: 383 HADLVVWEPEAEFELDNDHP-----VHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 436
ADLV+W P+ + N P M+H + + G + TI +G +VYKEG
Sbjct: 446 DADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEG 505
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 261
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 220 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 271
Query: 262 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 316
T + + D + PP+R D L L + +++++SDH P
Sbjct: 272 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 331
Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 374
+ K + + +F K G+S +Q + V W G G E + + S AKL
Sbjct: 332 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 391
Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
KG I G AD+VVW+PEA + V + + Y R G L TISRG +VY+
Sbjct: 392 KGRIIPGADADVVVWDPEATKTISASTQV--QGGDFNLYENMRCHGVPLVTISRGRVVYE 449
Query: 435 EG 436
G
Sbjct: 450 NG 451
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 261
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 241 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 292
Query: 262 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 316
T + + D + PP+R D L L + +++++SDH P
Sbjct: 293 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 352
Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 374
+ K + + +F K G+S +Q + V W G G E + + S AKL
Sbjct: 353 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 412
Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
KG I G AD+VVW+PEA + ++ + Y R G L TISRG +VY+
Sbjct: 413 KGRIIPGADADVVVWDPEATKTISAS--TQVQGGDFNLYENMRCHGVPLVTISRGRVVYE 470
Query: 435 EG 436
G
Sbjct: 471 NG 472
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/448 (22%), Positives = 174/448 (38%), Gaps = 51/448 (11%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXX 67
E II +S+ P+ +VVD + +++PG ID H H P G + F
Sbjct: 31 ENGIIKEISKNIEPKEGI--KVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQA 88
Query: 68 XXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYVDVGFWGGLVPENAYNA 122
+ID + + ++ + K A EK ++V + +W V +
Sbjct: 89 AVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQV------S 142
Query: 123 SALEALLNAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKR---PLLVHAE--- 175
+E L+ G+ SF C N F +T+ +E + R K VHAE
Sbjct: 143 REMEILVKE--RGVNSFXCFMAYKNSFMVTD----QEMYHIFKRCKELGAIAQVHAENGD 196
Query: 176 -MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 234
+ +G ++ +++ + S RP + E A + +A T ++
Sbjct: 197 MVFEGQKKMLEMGITGPEGHELS-----RPEALEAEATNRAIVIADSVCTP-------VY 244
Query: 235 IVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR----FKCAPPIR-D 289
IVH K G + E L + + D R F PPIR D
Sbjct: 245 IVHVQSIGAADVICKHRK-EGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPD 303
Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349
K L + L G +D + +D+ + K + + +F K G++ ++ + + W G
Sbjct: 304 PRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGV 363
Query: 350 KYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 407
G +T Q S A++ KG I +G D+V+W+P + D H
Sbjct: 364 NTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKD--THHHA 421
Query: 408 PSISAYLGRRLSGKVLATISRGNLVYKE 435
+ + G +++G + TI GN+V+ +
Sbjct: 422 VDFNIFEGIKVTGIAVTTIVAGNIVWSD 449
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 163/426 (38%), Gaps = 43/426 (10%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPST 87
+V+D +++PG ID H H+ P G + F +ID + +
Sbjct: 72 RVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGS 131
Query: 88 I--STETLKLKVD---AAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMC 141
+ + ET + D + ++V V +W V E ++ L+ + GV K FM
Sbjct: 132 LIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEE------MKILVQDKGVNSFKMFM- 184
Query: 142 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYS 197
D M + E S VHAE + +G+++ + L
Sbjct: 185 --AYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKML-----ALGITGPE 237
Query: 198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDS 257
+ RP + E A +T+A A L+IVH +A+ +G
Sbjct: 238 GHELCRPEAVEAEATLRAITIAS-------AVNCPLYIVHVMSKSAAKVIA-DARRDGKV 289
Query: 258 ITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDH 312
+ E L + + PP+R D + + L L + + +D+
Sbjct: 290 VYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDN 349
Query: 313 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAG 371
K L + +F K G++ ++ + V W G G E + + S AK+
Sbjct: 350 CTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFN 409
Query: 372 QV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 430
KG IA+G+ AD+V+W+P+ + H + + + + G G L TISRG
Sbjct: 410 LYPRKGRIAVGSDADIVIWDPKGTRTISAK--THHQAVNFNIFEGMVCHGVPLVTISRGK 467
Query: 431 LVYKEG 436
+VY+ G
Sbjct: 468 VVYEAG 473
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 155/416 (37%), Gaps = 37/416 (8%)
Query: 38 VIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 95
+++PG IDV+ +L P G T + F +ID + S++ T K
Sbjct: 57 MVIPGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKW 116
Query: 96 KVDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 150
A K ++VD+ W V E LE L+ G+ SF D
Sbjct: 117 HEAADTKSCCDYSLHVDITSWYDGVREE------LEVLVQDK--GVNSFQVYMAYKDLYQ 168
Query: 151 TNASHIKEGLSVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSWE 208
+ S + E + L +LVHAE E+ LE ++ +RP E
Sbjct: 169 MSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHAL---SRPEELE 225
Query: 209 EAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLA 268
A+ + +A R + P ++I + A+ G + E L
Sbjct: 226 AEAVFRAIAIAG--RINCP-----VYITKVMSKSAADIIAL-ARKKGPLVFGEPIAASLG 277
Query: 269 FSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 323
+ F +PP+ D + L L G + + S H P K +
Sbjct: 278 TDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVG 337
Query: 324 EGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAIG 381
+ NF G++ ++ + V W G E Q + S AK+ KG IA+G
Sbjct: 338 KDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVG 397
Query: 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
+ AD+V+W+P+ + H + + G G L IS+G +V+++GN
Sbjct: 398 SDADVVIWDPDKMKTITAKS--HKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGN 451
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 158/417 (37%), Gaps = 39/417 (9%)
Query: 38 VIMPGLIDVHAHLD--DPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 95
+++PG IDVH D G T + F +ID + +P T
Sbjct: 75 MVIPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVV-PEPGTSLLAAFDQ 133
Query: 96 KVDAAEKR------IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 148
+ A+ + ++VD+ W + E +EAL+ G+ SF+ D F
Sbjct: 134 WREWADSKSCCDYSLHVDISEWHKGIQEE------MEALVKDH--GVNSFLVYMAFKDRF 185
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 207
+T+ I E LSV+ VHAE + +E ++ D L ++ +RP
Sbjct: 186 QLTDC-QIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILD--LGITGPEGHVLSRPEEV 242
Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYL 267
E A+ +T+A +T+ P L+I +A+ G + E L
Sbjct: 243 EAEAVNRAITIAN--QTNCP-----LYITKVMSKSSAEVIA-QARKKGTVVYGEPITASL 294
Query: 268 AFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 322
+ F +PP+ D + L L G + + S H K +
Sbjct: 295 GTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAV 354
Query: 323 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAI 380
+ NF G + + + V W G E Q + S AK+ KG IA+
Sbjct: 355 GKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAV 414
Query: 381 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
G+ ADLV+W+P++ + H + + G G L IS+G +V ++G
Sbjct: 415 GSDADLVIWDPDSVKTI--SAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGT 469
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 294 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 353
E + + L DG + L DH P +P L+F V + +YG
Sbjct: 289 ETIAKLLKDGVLIALXCDH-PVIP-------------------LEFAT-VQAATAXRYGA 327
Query: 354 TLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVW 389
E L + PAK+ G + G+I G ADLVVW
Sbjct: 328 KEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVW 364
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 21 DWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
D P S V+D IMPGLID+H H+
Sbjct: 39 DKPIKSSNAHVIDVKGKTIMPGLIDLHVHV 68
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From
Agrobacterium Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From
Agrobacterium Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 11 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
G +I+ V E R++ QV+D G A + PGLID H H++
Sbjct: 61 GALIASVHEPASRRDAA--QVIDAGGAYVSPGLIDTHXHIE 99
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
+ + +G I S+ S + P K ++D+ +I+PG+ D+HAH
Sbjct: 34 IVVIDGKIASVSS--NLPDKYKGNPIIDFRNNIIIPGMNDLHAH 75
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
LSS+ + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSNGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
LSS+ + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSNGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine
Carboxypeptidase Cc2672 From Caulobacter Crescentus
Cb15 Complexed With N-Methyl Phosphonate Derivative Of
L-Arginine
Length = 403
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
V + +G I SI + D T VD ++PGLID+H HLD
Sbjct: 25 VIVTDGRITSIGKKGDAVPAGAT--AVDLPGVTLLPGLIDMHVHLD 68
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 395
LQF+ P KYG +LE A +W E K+ V S AIA D V + E
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 396 ELDNDHPVHM 405
E+D V M
Sbjct: 237 EVDGQKFVEM 246
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With
Bound Zn
Length = 472
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
AV + G I++++ D + V +A +MPGL++ H H
Sbjct: 37 AVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTH 81
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With
N- Methylphosphonate-L-Proline
Length = 423
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 16 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
IV D P + Q +D +MPG ID H H+
Sbjct: 34 IVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 16 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
IV D P + Q +D +MPG ID H H+
Sbjct: 34 IVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 395
LQF+ P KYG +LE A +W E K+ V S AIA D V + E
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 396 ELDNDHPVHM 405
E+D V M
Sbjct: 237 EVDGQKFVEM 246
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 353 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 392
+TLEQ + + PA++ G +G + G AD+VV++P+
Sbjct: 395 MTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPD 434
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 29 GQVVDYGEAVIMPGLIDVHAHLDDPG 54
G+++D +MP D H HLD+ G
Sbjct: 83 GEIIDLKGKFVMPAFFDSHLHLDELG 108
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
V I +G I ++ +E P+ + ++ ++V++PG+ID+H H
Sbjct: 24 VGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMIDIHIH 65
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 29 GQVVDYGEAVIMPGLIDVHAHLDDPG 54
G++VD +MP D H HLD+ G
Sbjct: 49 GEIVDLKGKYVMPAFFDSHLHLDELG 74
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution -
A New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
+ E +I+ + E+ +++ ++D + + PGL+D H H+
Sbjct: 28 VVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHV 70
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHL 50
+ ++ G I E D P + T + D G I P LID H HL
Sbjct: 42 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHL 87
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHL 50
+ ++ G I E D P + T + D G I P LID H HL
Sbjct: 44 IAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHL 89
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 80 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 139 FMC 141
+
Sbjct: 198 HLV 200
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 80 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 139 FMC 141
+
Sbjct: 198 HLV 200
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 80 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 139 FMC 141
+
Sbjct: 198 HLV 200
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 80 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 139 FMC 141
+
Sbjct: 198 HLV 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,825,770
Number of Sequences: 62578
Number of extensions: 574602
Number of successful extensions: 1482
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 66
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)