Query 013050
Match_columns 450
No_of_seqs 139 out of 1554
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 23:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02795 allantoinase 100.0 7.1E-58 1.5E-62 448.2 47.3 445 2-449 60-504 (505)
2 COG0044 PyrC Dihydroorotase an 100.0 7.8E-57 1.7E-61 425.9 44.1 412 2-441 17-428 (430)
3 PRK06189 allantoinase; Provisi 100.0 1.6E-55 3.4E-60 429.7 47.1 427 3-449 20-447 (451)
4 PRK07627 dihydroorotase; Provi 100.0 1.8E-55 3.9E-60 423.2 45.1 406 2-436 19-425 (425)
5 PRK13404 dihydropyrimidinase; 100.0 2E-55 4.4E-60 429.5 45.2 426 3-449 21-461 (477)
6 PRK08044 allantoinase; Provisi 100.0 9.6E-55 2.1E-59 422.1 46.3 424 3-448 20-449 (449)
7 TIGR03178 allantoinase allanto 100.0 1E-54 2.2E-59 423.9 46.0 427 2-448 16-443 (443)
8 cd01315 L-HYD_ALN L-Hydantoina 100.0 3.2E-54 7E-59 422.5 47.0 430 2-448 16-447 (447)
9 PLN02942 dihydropyrimidinase 100.0 2.2E-54 4.7E-59 424.2 44.8 427 3-449 22-458 (486)
10 PRK09059 dihydroorotase; Valid 100.0 4.7E-54 1E-58 413.9 43.9 406 3-434 22-428 (429)
11 PRK08417 dihydroorotase; Provi 100.0 3.9E-54 8.5E-59 410.6 41.8 385 6-434 1-386 (386)
12 PRK07369 dihydroorotase; Provi 100.0 7.1E-54 1.5E-58 410.8 43.0 397 2-427 20-418 (418)
13 cd01314 D-HYD D-hydantoinases 100.0 2.7E-53 5.9E-58 416.0 44.9 422 2-441 15-443 (447)
14 PRK08323 phenylhydantoinase; V 100.0 3.3E-53 7.1E-58 417.1 44.5 426 2-449 17-452 (459)
15 TIGR02033 D-hydantoinase D-hyd 100.0 4.6E-53 1E-57 416.0 45.2 430 2-449 15-454 (454)
16 TIGR00857 pyrC_multi dihydroor 100.0 8.5E-53 1.9E-57 405.6 44.4 405 2-435 4-411 (411)
17 PRK07575 dihydroorotase; Provi 100.0 1.4E-52 3E-57 406.7 44.8 415 3-448 21-435 (438)
18 PRK09236 dihydroorotase; Revie 100.0 2.1E-52 4.5E-57 406.9 45.4 423 2-448 18-441 (444)
19 PRK01211 dihydroorotase; Provi 100.0 1.3E-52 2.8E-57 398.8 39.2 392 2-449 14-405 (409)
20 PRK09060 dihydroorotase; Valid 100.0 1E-51 2.2E-56 400.9 44.7 415 3-449 22-438 (444)
21 PRK02382 dihydroorotase; Provi 100.0 1.1E-51 2.3E-56 401.9 43.1 416 2-449 18-435 (443)
22 PRK09357 pyrC dihydroorotase; 100.0 3.1E-50 6.7E-55 391.3 44.4 404 2-435 18-423 (423)
23 PRK04250 dihydroorotase; Provi 100.0 5.6E-50 1.2E-54 381.4 41.5 385 2-447 13-398 (398)
24 KOG2584 Dihydroorotase and rel 100.0 1.9E-51 4.1E-56 366.3 27.8 430 2-449 30-470 (522)
25 cd01318 DHOase_IIb Dihydroorot 100.0 1.7E-47 3.7E-52 360.6 38.4 361 36-429 1-361 (361)
26 PRK00369 pyrC dihydroorotase; 100.0 1.1E-46 2.4E-51 356.3 40.0 374 3-448 13-388 (392)
27 cd01317 DHOase_IIa Dihydroorot 100.0 2.2E-45 4.8E-50 350.3 39.2 371 29-425 2-374 (374)
28 cd01302 Cyclic_amidohydrolases 100.0 1.9E-45 4.2E-50 344.8 36.2 336 37-425 1-337 (337)
29 cd01316 CAD_DHOase The eukaryo 100.0 9E-41 1.9E-45 310.9 38.0 339 37-441 2-340 (344)
30 PRK09061 D-glutamate deacylase 100.0 2.5E-40 5.5E-45 324.7 34.3 374 3-449 38-506 (509)
31 cd01297 D-aminoacylase D-amino 100.0 3.7E-40 8E-45 318.6 31.7 346 2-445 18-415 (415)
32 PRK15446 phosphonate metabolis 100.0 1.9E-35 4.2E-40 280.9 27.3 343 3-435 19-382 (383)
33 TIGR02318 phosphono_phnM phosp 100.0 6.6E-35 1.4E-39 276.3 28.4 341 3-433 15-376 (376)
34 PRK06687 chlorohydrolase; Vali 100.0 1.8E-34 3.9E-39 280.2 28.8 357 2-442 20-418 (419)
35 PRK15493 5-methylthioadenosine 100.0 3.1E-34 6.8E-39 278.5 27.6 364 2-446 21-422 (435)
36 PRK08203 hydroxydechloroatrazi 100.0 6E-33 1.3E-37 272.0 29.8 359 2-443 22-433 (451)
37 cd01294 DHOase Dihydroorotase 100.0 1.6E-32 3.4E-37 258.0 30.1 321 39-415 2-329 (335)
38 cd01298 ATZ_TRZ_like TRZ/ATZ f 100.0 4.8E-33 1.1E-37 271.2 27.5 351 2-439 18-411 (411)
39 PRK06380 metal-dependent hydro 100.0 9E-33 2E-37 268.4 29.0 359 2-448 20-414 (418)
40 PRK09045 N-ethylammeline chlor 100.0 5.9E-33 1.3E-37 271.2 27.8 354 2-444 27-425 (443)
41 PRK07228 N-ethylammeline chlor 100.0 1E-33 2.3E-38 277.3 21.6 356 2-445 20-425 (445)
42 COG1228 HutI Imidazolonepropio 100.0 2.6E-33 5.6E-38 264.6 21.1 328 2-437 27-405 (406)
43 PRK08204 hypothetical protein; 100.0 4.9E-32 1.1E-36 265.9 30.1 351 2-445 22-428 (449)
44 PRK13985 ureB urease subunit b 100.0 5.5E-32 1.2E-36 257.1 27.9 331 2-435 81-458 (568)
45 PRK12394 putative metallo-depe 100.0 2E-31 4.3E-36 254.9 32.0 331 3-437 22-378 (379)
46 PRK07203 putative chlorohydrol 100.0 5.9E-32 1.3E-36 264.1 27.4 357 3-445 21-426 (442)
47 PRK06151 N-ethylammeline chlor 100.0 2.8E-32 6E-37 268.7 24.3 358 2-444 22-448 (488)
48 PRK09228 guanine deaminase; Pr 100.0 1E-31 2.2E-36 260.5 27.1 358 1-435 29-432 (433)
49 PRK13308 ureC urease subunit a 100.0 5.3E-31 1.2E-35 251.5 30.1 330 2-434 85-458 (569)
50 TIGR03314 Se_ssnA putative sel 100.0 1.9E-31 4.1E-36 259.5 26.9 364 2-445 19-425 (441)
51 TIGR01975 isoAsp_dipep isoaspa 100.0 5E-30 1.1E-34 242.4 33.9 348 3-441 17-385 (389)
52 cd00375 Urease_alpha Urease al 100.0 1E-30 2.2E-35 249.5 29.2 335 2-439 81-463 (567)
53 PRK12393 amidohydrolase; Provi 100.0 6.6E-31 1.4E-35 256.9 28.4 362 4-446 26-441 (457)
54 PRK13309 ureC urease subunit a 100.0 1.4E-30 3E-35 251.4 29.4 340 2-439 85-467 (572)
55 PRK08393 N-ethylammeline chlor 100.0 7.8E-31 1.7E-35 254.6 27.5 349 3-443 20-409 (424)
56 TIGR00856 pyrC_dimer dihydroor 100.0 6.8E-30 1.5E-34 238.1 32.2 330 38-422 2-340 (341)
57 TIGR02967 guan_deamin guanine 100.0 2.6E-30 5.6E-35 250.0 30.1 355 2-429 5-401 (401)
58 PRK13206 ureC urease subunit a 100.0 2.7E-30 5.9E-35 247.9 29.4 335 2-435 87-463 (573)
59 COG1574 Predicted metal-depend 100.0 3.7E-31 8E-36 255.3 22.2 216 147-435 314-534 (535)
60 cd01303 GDEase Guanine deamina 100.0 7.4E-30 1.6E-34 247.7 30.1 350 2-429 25-429 (429)
61 PRK10657 isoaspartyl dipeptida 100.0 4.8E-29 1E-33 240.4 35.2 344 3-442 18-385 (388)
62 cd01293 Bact_CD Bacterial cyto 100.0 9.3E-30 2E-34 247.1 29.5 345 2-432 13-398 (398)
63 PRK06038 N-ethylammeline chlor 100.0 8.9E-30 1.9E-34 247.4 29.2 346 3-443 21-410 (430)
64 PRK13207 ureC urease subunit a 100.0 4.8E-29 1E-33 240.1 32.3 340 2-439 83-463 (568)
65 cd01308 Isoaspartyl-dipeptidas 100.0 6.6E-29 1.4E-33 239.3 33.2 343 2-441 16-383 (387)
66 PRK07213 chlorohydrolase; Prov 100.0 1.5E-29 3.2E-34 241.4 27.2 323 2-431 18-375 (375)
67 TIGR01178 ade adenine deaminas 100.0 6.5E-29 1.4E-33 244.2 31.7 309 2-439 18-342 (552)
68 PRK09229 N-formimino-L-glutama 100.0 2E-29 4.3E-34 246.8 27.2 348 2-440 18-438 (456)
69 TIGR02022 hutF formiminoglutam 100.0 3E-29 6.6E-34 244.8 28.0 352 2-441 17-439 (455)
70 PRK09356 imidazolonepropionase 100.0 4E-29 8.7E-34 242.4 28.4 326 2-434 27-406 (406)
71 TIGR01224 hutI imidazoloneprop 100.0 3.9E-29 8.4E-34 240.2 26.9 324 1-431 1-377 (377)
72 PRK05451 dihydroorotase; Provi 100.0 3E-28 6.6E-33 228.4 30.9 327 38-423 5-344 (345)
73 PRK09237 dihydroorotase; Provi 100.0 6.6E-28 1.4E-32 231.3 33.0 337 3-440 18-375 (380)
74 cd01313 Met_dep_hydrolase_E Me 100.0 6.1E-29 1.3E-33 240.4 25.6 339 2-430 9-418 (418)
75 PRK07583 cytosine deaminase-li 100.0 2.1E-28 4.5E-33 238.2 28.8 347 3-436 40-425 (438)
76 PRK08418 chlorohydrolase; Prov 100.0 8.3E-29 1.8E-33 238.1 25.4 352 2-432 20-407 (408)
77 cd01312 Met_dep_hydrolase_D Me 100.0 4.5E-29 9.8E-34 237.5 23.0 343 11-430 1-381 (381)
78 TIGR01792 urease_alph urease, 100.0 9.9E-29 2.1E-33 238.4 24.5 338 2-439 82-462 (567)
79 PRK05985 cytosine deaminase; P 100.0 8.5E-28 1.8E-32 231.4 30.9 337 4-436 17-391 (391)
80 PRK09230 cytosine deaminase; P 100.0 3.1E-27 6.7E-32 228.2 34.4 351 4-435 20-407 (426)
81 COG0402 SsnA Cytosine deaminas 100.0 1.8E-28 4E-33 237.6 25.2 354 2-439 21-414 (421)
82 PLN02303 urease 100.0 2.2E-28 4.7E-33 241.1 24.6 333 2-435 350-727 (837)
83 cd01296 Imidazolone-5PH Imidaz 100.0 1.4E-27 3E-32 229.1 28.3 318 6-429 1-371 (371)
84 COG1001 AdeC Adenine deaminase 100.0 1E-27 2.2E-32 226.3 26.1 311 1-439 41-364 (584)
85 PRK14085 imidazolonepropionase 100.0 1E-27 2.2E-32 229.8 25.5 296 2-394 27-365 (382)
86 cd01299 Met_dep_hydrolase_A Me 100.0 4.4E-28 9.5E-33 230.0 21.9 288 29-395 1-337 (342)
87 PRK07572 cytosine deaminase; V 100.0 3.3E-26 7.2E-31 222.2 32.7 345 4-437 18-405 (426)
88 PLN02599 dihydroorotase 100.0 3.7E-26 8E-31 213.0 29.8 298 37-378 22-329 (364)
89 cd01307 Met_dep_hydrolase_B Me 100.0 3.7E-26 8E-31 215.5 29.6 296 5-393 1-317 (338)
90 PRK10027 cryptic adenine deami 100.0 9.6E-26 2.1E-30 221.8 32.3 310 2-439 48-370 (588)
91 PRK06846 putative deaminase; V 100.0 1.8E-25 4E-30 216.1 31.4 335 3-435 31-406 (410)
92 KOG3968 Atrazine chlorohydrola 99.9 3.1E-27 6.7E-32 212.6 15.9 354 3-434 27-438 (439)
93 cd01309 Met_dep_hydrolase_C Me 99.9 1.5E-25 3.2E-30 212.3 26.5 314 10-433 1-359 (359)
94 PRK11170 nagA N-acetylglucosam 99.9 4.3E-25 9.3E-30 208.9 27.7 336 3-434 18-381 (382)
95 TIGR00221 nagA N-acetylglucosa 99.9 6.1E-25 1.3E-29 207.2 25.5 334 3-430 21-380 (380)
96 cd01304 FMDH_A Formylmethanofu 99.9 5E-24 1.1E-28 203.6 31.2 386 2-448 16-511 (541)
97 COG1820 NagA N-acetylglucosami 99.9 1.7E-24 3.7E-29 196.4 25.9 332 3-434 18-380 (380)
98 cd01295 AdeC Adenine deaminase 99.9 5.6E-24 1.2E-28 206.0 30.3 282 33-436 1-293 (422)
99 TIGR03121 one_C_dehyd_A formyl 99.9 6.7E-24 1.5E-28 203.8 29.5 86 351-448 428-513 (556)
100 cd01300 YtcJ_like YtcJ_like me 99.9 8E-25 1.7E-29 216.6 22.4 186 148-388 289-479 (479)
101 cd00854 NagA N-acetylglucosami 99.9 1.8E-24 3.9E-29 206.0 23.7 325 2-392 15-364 (374)
102 TIGR03583 EF_0837 probable ami 99.9 2.6E-23 5.6E-28 198.4 29.5 328 4-432 16-364 (365)
103 COG0804 UreC Urea amidohydrola 99.9 7.9E-24 1.7E-28 188.3 22.2 333 1-434 82-457 (568)
104 COG3454 Metal-dependent hydrol 99.9 1.9E-23 4E-28 181.5 23.8 342 2-433 15-377 (377)
105 COG3964 Predicted amidohydrola 99.9 5.2E-23 1.1E-27 176.7 23.1 299 4-393 24-340 (386)
106 COG3653 N-acyl-D-aspartate/D-g 99.9 1.8E-22 3.9E-27 181.3 27.5 92 352-449 473-568 (579)
107 cd01306 PhnM PhnM is believed 99.9 1.5E-19 3.3E-24 165.9 26.2 264 40-392 1-312 (325)
108 PF13147 Amidohydro_4: Amidohy 99.8 1.7E-19 3.7E-24 168.2 22.4 295 33-387 1-304 (304)
109 PF01979 Amidohydro_1: Amidohy 99.8 2.5E-18 5.4E-23 162.9 12.7 43 348-390 290-333 (333)
110 KOG3892 N-acetyl-glucosamine-6 99.7 3.8E-16 8.3E-21 132.5 16.7 69 340-435 335-405 (407)
111 PF07969 Amidohydro_3: Amidohy 99.7 2.5E-16 5.5E-21 153.1 16.0 243 65-388 136-404 (404)
112 COG1229 FwdA Formylmethanofura 99.7 1.8E-14 4E-19 129.3 19.7 84 353-446 438-522 (575)
113 PF13594 Amidohydro_5: Amidohy 99.6 1.9E-15 4E-20 106.2 7.9 68 6-76 1-68 (68)
114 PRK06886 hypothetical protein; 99.6 2.3E-12 4.9E-17 119.1 25.5 245 65-372 75-327 (329)
115 cd01292 metallo-dependent_hydr 99.5 3.7E-13 8E-18 123.6 18.7 246 43-369 1-275 (275)
116 cd01305 archeal_chlorohydrolas 99.5 4.3E-13 9.2E-18 122.2 18.1 136 156-369 127-263 (263)
117 COG0418 PyrC Dihydroorotase [N 99.5 1.3E-11 2.8E-16 107.3 25.2 293 38-373 5-304 (344)
118 KOG2902 Dihydroorotase [Nucleo 99.3 6.1E-10 1.3E-14 93.5 18.2 289 39-372 6-300 (344)
119 PRK10812 putative DNAse; Provi 99.1 7.7E-08 1.7E-12 86.9 22.6 246 43-372 3-256 (265)
120 cd01310 TatD_DNAse TatD like p 99.0 4.8E-08 1E-12 88.5 21.2 241 43-371 1-251 (251)
121 COG0084 TatD Mg-dependent DNas 99.0 1.2E-07 2.6E-12 84.0 21.5 245 43-372 3-256 (256)
122 TIGR00010 hydrolase, TatD fami 99.0 1.5E-07 3.2E-12 85.4 21.0 242 43-372 1-252 (252)
123 PRK11449 putative deoxyribonuc 98.9 3.9E-07 8.6E-12 82.0 21.2 249 40-372 2-258 (258)
124 PRK10425 DNase TatD; Provision 98.9 5E-07 1.1E-11 81.2 20.5 252 43-372 1-258 (258)
125 PF01026 TatD_DNase: TatD rela 98.7 8.9E-07 1.9E-11 80.1 17.9 245 44-371 1-255 (255)
126 cd00530 PTE Phosphotriesterase 98.7 3.8E-06 8.1E-11 77.9 20.8 159 151-370 133-293 (293)
127 PF12890 DHOase: Dihydro-orota 98.5 3.9E-07 8.6E-12 69.7 6.7 140 36-241 1-140 (142)
128 PRK09875 putative hydrolase; P 98.4 0.00021 4.5E-09 65.2 22.8 254 42-371 7-292 (292)
129 TIGR01430 aden_deam adenosine 98.2 0.00026 5.7E-09 66.5 20.2 143 151-372 169-312 (324)
130 cd01320 ADA Adenosine deaminas 98.2 0.00023 5E-09 67.0 19.8 143 151-372 170-313 (325)
131 PRK09358 adenosine deaminase; 98.0 0.0011 2.3E-08 62.9 20.8 143 151-372 179-322 (340)
132 COG1099 Predicted metal-depend 98.0 0.0023 4.9E-08 54.2 18.6 239 43-372 2-253 (254)
133 PF07908 D-aminoacyl_C: D-amin 97.8 2E-05 4.3E-10 50.2 3.1 31 420-450 18-48 (48)
134 cd01311 PDC_hydrolase 2-pyrone 97.7 0.038 8.2E-07 50.2 24.5 121 42-175 1-131 (263)
135 PF02126 PTE: Phosphotriestera 97.7 0.001 2.3E-08 61.2 13.1 262 42-370 7-307 (308)
136 PF04909 Amidohydro_2: Amidohy 97.5 0.0028 6E-08 58.0 14.1 187 118-372 83-273 (273)
137 COG1831 Predicted metal-depend 97.1 0.1 2.3E-06 45.8 17.8 137 152-372 143-282 (285)
138 COG1735 Php Predicted metal-de 97.0 0.23 4.9E-06 44.8 20.0 118 231-372 193-314 (316)
139 cd00443 ADA_AMPD Adenosine/AMP 96.7 0.22 4.7E-06 46.4 18.1 137 152-368 151-289 (305)
140 PTZ00124 adenosine deaminase; 96.5 0.26 5.7E-06 46.7 17.2 136 154-364 206-342 (362)
141 cd01321 ADGF Adenosine deamina 96.4 0.18 4E-06 47.6 15.8 110 152-314 177-288 (345)
142 PF00962 A_deaminase: Adenosin 95.8 0.25 5.4E-06 46.6 13.5 152 132-368 164-316 (331)
143 COG2159 Predicted metal-depend 95.2 2.5 5.4E-05 39.0 21.4 172 121-372 114-290 (293)
144 COG1816 Add Adenosine deaminas 94.5 0.56 1.2E-05 43.8 11.3 108 151-315 182-289 (345)
145 TIGR01431 adm_rel adenosine de 92.7 4.4 9.6E-05 40.1 14.7 54 243-313 360-413 (479)
146 KOG3020 TatD-related DNase [Re 92.4 8.4 0.00018 35.2 18.7 136 36-177 11-158 (296)
147 PRK08392 hypothetical protein; 91.7 8.7 0.00019 33.6 19.5 34 44-79 1-34 (215)
148 PRK08609 hypothetical protein; 91.5 18 0.00038 37.0 19.9 35 44-80 336-370 (570)
149 COG3618 Predicted metal-depend 91.4 11 0.00023 34.1 21.2 152 39-240 5-171 (279)
150 COG4464 CapC Capsular polysacc 88.0 1.4 3E-05 37.6 5.6 58 43-100 1-62 (254)
151 KOG1097 Adenine deaminase/aden 83.7 30 0.00066 33.0 12.6 106 152-313 225-330 (399)
152 PF00449 Urease_alpha: Urease 82.9 0.85 1.8E-05 34.5 1.8 22 1-22 81-102 (121)
153 PRK06361 hypothetical protein; 82.6 3.5 7.6E-05 36.0 6.0 57 296-372 154-210 (212)
154 PRK00912 ribonuclease P protei 81.2 6.4 0.00014 35.0 7.2 67 296-382 160-228 (237)
155 PRK07945 hypothetical protein; 78.2 62 0.0013 30.5 17.6 35 43-79 97-131 (335)
156 PRK12330 oxaloacetate decarbox 69.3 64 0.0014 32.2 11.0 107 63-180 101-213 (499)
157 smart00518 AP2Ec AP endonuclea 67.7 96 0.0021 28.1 11.8 53 122-174 13-65 (273)
158 PRK01060 endonuclease IV; Prov 64.9 1.1E+02 0.0024 27.8 11.7 54 121-174 14-70 (281)
159 cd00951 KDGDH 5-dehydro-4-deox 64.3 1E+02 0.0022 28.3 11.0 108 58-174 20-132 (289)
160 PF10566 Glyco_hydro_97: Glyco 63.7 17 0.00038 32.9 5.6 108 61-175 34-158 (273)
161 COG5016 Pyruvate/oxaloacetate 62.6 1.1E+02 0.0024 29.4 10.4 102 65-181 104-213 (472)
162 PRK14042 pyruvate carboxylase 62.3 88 0.0019 32.1 10.8 107 63-181 100-211 (596)
163 PRK03620 5-dehydro-4-deoxygluc 60.5 1.4E+02 0.0031 27.6 11.3 109 57-174 26-139 (303)
164 COG0826 Collagenase and relate 59.5 16 0.00034 34.6 4.7 56 119-174 13-69 (347)
165 TIGR01496 DHPS dihydropteroate 59.0 53 0.0012 29.6 7.9 65 122-186 26-94 (257)
166 KOG4549 Magnesium-dependent ph 58.2 72 0.0016 25.0 7.1 52 27-79 5-67 (144)
167 PRK12581 oxaloacetate decarbox 58.1 1.6E+02 0.0034 29.3 11.3 105 64-179 110-218 (468)
168 PRK09248 putative hydrolase; V 55.8 1.5E+02 0.0033 26.4 19.8 36 43-79 4-39 (246)
169 TIGR00587 nfo apurinic endonuc 50.2 2E+02 0.0043 26.1 11.1 55 120-174 12-69 (274)
170 TIGR03249 KdgD 5-dehydro-4-deo 50.1 2.1E+02 0.0046 26.4 10.8 109 57-174 24-137 (296)
171 PRK08444 hypothetical protein; 49.9 1.2E+02 0.0025 29.0 8.9 110 59-171 83-206 (353)
172 PF02811 PHP: PHP domain; Int 49.8 24 0.00052 29.2 4.0 36 44-79 1-36 (175)
173 PLN02417 dihydrodipicolinate s 49.7 2.1E+02 0.0045 26.2 10.8 112 57-174 20-132 (280)
174 PF04481 DUF561: Protein of un 49.5 1.8E+02 0.0039 25.4 10.2 128 114-259 21-149 (242)
175 cd00950 DHDPS Dihydrodipicolin 47.5 2.2E+02 0.0048 25.9 10.5 113 57-174 19-133 (284)
176 cd00952 CHBPH_aldolase Trans-o 45.6 1.3E+02 0.0027 28.1 8.3 51 123-176 33-86 (309)
177 TIGR01235 pyruv_carbox pyruvat 40.8 3.5E+02 0.0076 30.5 11.9 104 65-179 631-744 (1143)
178 cd00952 CHBPH_aldolase Trans-o 40.3 3.1E+02 0.0067 25.5 10.3 110 57-174 27-142 (309)
179 PRK03170 dihydrodipicolinate s 39.7 3E+02 0.0065 25.2 10.4 108 58-174 21-134 (292)
180 PRK12331 oxaloacetate decarbox 39.5 3E+02 0.0064 27.3 10.1 106 63-179 100-209 (448)
181 PF00701 DHDPS: Dihydrodipicol 38.9 2E+02 0.0044 26.3 8.6 110 58-175 21-135 (289)
182 cd00951 KDGDH 5-dehydro-4-deox 38.4 3.2E+02 0.0069 25.1 10.8 49 124-175 26-77 (289)
183 PF07287 DUF1446: Protein of u 38.0 2.5E+02 0.0054 26.8 9.0 66 153-255 57-122 (362)
184 PF04273 DUF442: Putative phos 37.9 1.8E+02 0.004 22.2 7.8 27 150-176 69-95 (110)
185 PRK14040 oxaloacetate decarbox 37.8 4.3E+02 0.0093 27.3 11.2 106 64-180 102-211 (593)
186 cd00408 DHDPS-like Dihydrodipi 37.8 3.1E+02 0.0068 24.9 11.1 110 57-174 16-130 (281)
187 PRK08185 hypothetical protein; 37.2 3.3E+02 0.0072 25.0 9.7 17 158-174 59-75 (283)
188 PRK08883 ribulose-phosphate 3- 36.9 2.9E+02 0.0063 24.2 10.5 36 230-265 81-116 (220)
189 PRK04147 N-acetylneuraminate l 36.3 3.5E+02 0.0075 24.9 11.1 110 56-174 21-137 (293)
190 COG1242 Predicted Fe-S oxidore 36.2 1.4E+02 0.003 27.1 6.5 23 152-174 166-188 (312)
191 PF00834 Ribul_P_3_epim: Ribul 35.3 2.9E+02 0.0064 23.8 9.6 101 122-266 15-116 (201)
192 PRK03170 dihydrodipicolinate s 34.6 2.2E+02 0.0048 26.1 8.2 50 124-176 27-79 (292)
193 TIGR01429 AMP_deaminase AMP de 34.2 5.5E+02 0.012 26.6 11.9 61 293-372 503-564 (611)
194 PLN02417 dihydrodipicolinate s 33.8 2.4E+02 0.0053 25.7 8.2 50 124-176 27-79 (280)
195 TIGR00674 dapA dihydrodipicoli 33.5 2.4E+02 0.0052 25.8 8.1 51 123-176 23-76 (285)
196 TIGR02148 Fibro_Slime fibro-sl 32.7 63 0.0014 23.6 3.2 23 422-444 29-51 (90)
197 PRK09195 gatY tagatose-bisphos 32.1 4.1E+02 0.0088 24.4 9.8 23 152-174 58-81 (284)
198 cd00953 KDG_aldolase KDG (2-ke 32.0 4E+02 0.0086 24.3 12.3 112 56-174 17-128 (279)
199 TIGR03249 KdgD 5-dehydro-4-deo 32.0 4.1E+02 0.0089 24.5 11.6 50 123-175 30-82 (296)
200 PRK14041 oxaloacetate decarbox 32.0 3.3E+02 0.0072 27.1 9.1 104 65-179 101-208 (467)
201 TIGR00683 nanA N-acetylneurami 31.6 2.8E+02 0.006 25.5 8.2 88 122-274 24-115 (290)
202 PRK09240 thiH thiamine biosynt 31.5 3.7E+02 0.0081 25.8 9.3 107 59-172 107-221 (371)
203 cd00953 KDG_aldolase KDG (2-ke 31.3 4E+02 0.0086 24.3 9.2 50 123-175 24-73 (279)
204 PF10055 DUF2292: Uncharacteri 31.3 48 0.001 19.8 2.0 15 5-19 19-33 (38)
205 smart00481 POLIIIAc DNA polyme 29.8 74 0.0016 21.4 3.2 35 45-79 1-35 (67)
206 PF07894 DUF1669: Protein of u 29.8 3.2E+02 0.0069 25.0 7.8 53 117-176 131-183 (284)
207 TIGR01108 oadA oxaloacetate de 29.7 5E+02 0.011 26.8 10.2 106 64-180 96-205 (582)
208 PF00701 DHDPS: Dihydrodipicol 29.3 2.9E+02 0.0063 25.3 8.0 51 123-176 26-79 (289)
209 COG1038 PycA Pyruvate carboxyl 29.1 5.9E+02 0.013 27.3 10.2 141 154-366 17-158 (1149)
210 PRK09195 gatY tagatose-bisphos 29.0 4.6E+02 0.01 24.1 11.6 109 63-175 88-210 (284)
211 TIGR00674 dapA dihydrodipicoli 29.0 4.5E+02 0.0098 24.0 10.9 108 58-174 18-131 (285)
212 PRK06256 biotin synthase; Vali 28.6 5E+02 0.011 24.4 10.0 111 59-174 94-207 (336)
213 PRK09282 pyruvate carboxylase 28.6 3.8E+02 0.0083 27.7 9.2 106 64-180 101-210 (592)
214 PRK12738 kbaY tagatose-bisphos 28.2 4.8E+02 0.01 24.0 10.0 23 152-174 58-81 (286)
215 TIGR02313 HpaI-NOT-DapA 2,4-di 27.9 3.6E+02 0.0078 24.8 8.3 50 124-176 26-78 (294)
216 cd01319 AMPD AMP deaminase (AM 27.9 4.6E+02 0.0099 26.4 9.3 59 295-372 393-452 (496)
217 PRK08195 4-hyroxy-2-oxovalerat 27.5 5.3E+02 0.012 24.3 11.5 104 64-178 93-200 (337)
218 COG0191 Fba Fructose/tagatose 27.3 4.9E+02 0.011 23.9 9.8 21 154-174 61-82 (286)
219 PRK07360 FO synthase subunit 2 27.1 5.4E+02 0.012 24.7 9.6 112 59-172 94-219 (371)
220 COG0329 DapA Dihydrodipicolina 26.7 5.1E+02 0.011 24.0 9.0 51 124-177 30-83 (299)
221 COG0269 SgbH 3-hexulose-6-phos 26.5 4.4E+02 0.0095 23.0 11.1 41 125-174 73-113 (217)
222 PRK15108 biotin synthase; Prov 26.3 5.6E+02 0.012 24.3 11.7 110 59-174 79-191 (345)
223 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.2 5E+02 0.011 23.6 9.4 104 64-178 96-203 (275)
224 PRK12737 gatY tagatose-bisphos 25.8 5.3E+02 0.011 23.7 11.6 109 63-175 88-210 (284)
225 PRK06801 hypothetical protein; 25.7 5.3E+02 0.011 23.7 10.3 15 160-174 67-81 (286)
226 TIGR01858 tag_bisphos_ald clas 25.4 5.3E+02 0.012 23.7 9.9 23 152-174 56-79 (282)
227 TIGR02351 thiH thiazole biosyn 25.2 4.7E+02 0.01 25.0 8.8 107 58-172 105-220 (366)
228 PRK12738 kbaY tagatose-bisphos 25.1 5.4E+02 0.012 23.7 11.6 109 63-175 88-210 (286)
229 PF01116 F_bP_aldolase: Fructo 24.5 3.1E+02 0.0067 25.2 7.1 24 151-174 25-48 (287)
230 cd00954 NAL N-Acetylneuraminic 24.3 5.5E+02 0.012 23.5 11.8 112 58-174 20-135 (288)
231 PRK07709 fructose-bisphosphate 24.2 5.7E+02 0.012 23.5 12.2 109 63-175 91-211 (285)
232 PRK08745 ribulose-phosphate 3- 24.1 5E+02 0.011 22.9 10.5 36 230-265 85-120 (223)
233 PRK09250 fructose-bisphosphate 24.0 1.1E+02 0.0024 28.9 4.0 50 123-174 150-199 (348)
234 PRK12737 gatY tagatose-bisphos 23.5 5.8E+02 0.013 23.4 9.9 23 152-174 58-81 (284)
235 PRK06806 fructose-bisphosphate 23.4 5.8E+02 0.013 23.4 10.0 13 162-174 69-81 (281)
236 PTZ00372 endonuclease 4-like p 23.4 7.1E+02 0.015 24.4 14.5 70 102-174 127-199 (413)
237 PRK12999 pyruvate carboxylase; 23.4 8.4E+02 0.018 27.7 11.2 106 65-181 633-748 (1146)
238 PF14871 GHL6: Hypothetical gl 23.0 3.6E+02 0.0077 21.4 6.3 26 149-174 39-64 (132)
239 PLN02389 biotin synthase 22.9 6.9E+02 0.015 24.1 11.3 110 59-174 119-233 (379)
240 PRK03620 5-dehydro-4-deoxygluc 22.9 6.1E+02 0.013 23.4 11.4 49 124-175 33-84 (303)
241 PRK05926 hypothetical protein; 22.8 6.3E+02 0.014 24.3 9.1 111 59-172 102-225 (370)
242 TIGR03221 muco_delta muconolac 22.7 97 0.0021 22.7 2.7 41 352-393 13-59 (90)
243 PRK15446 phosphonate metabolis 22.6 1.1E+02 0.0024 29.5 4.0 37 150-186 210-247 (383)
244 COG0296 GlgB 1,4-alpha-glucan 22.5 2.4E+02 0.0052 29.1 6.4 24 150-173 210-233 (628)
245 PRK08123 histidinol-phosphatas 22.5 1.1E+02 0.0023 27.9 3.7 37 43-79 3-39 (270)
246 TIGR02313 HpaI-NOT-DapA 2,4-di 22.3 6.2E+02 0.013 23.3 10.6 109 58-174 20-134 (294)
247 PLN02768 AMP deaminase 22.2 4.7E+02 0.01 28.0 8.4 62 293-372 714-775 (835)
248 PF05862 IceA2: Helicobacter p 22.1 1.9E+02 0.004 18.9 3.5 35 6-40 5-39 (59)
249 PRK08204 hypothetical protein; 21.8 7.6E+02 0.017 24.2 10.4 24 207-238 198-221 (449)
250 cd00408 DHDPS-like Dihydrodipi 21.8 6E+02 0.013 23.0 9.5 50 124-176 23-75 (281)
251 TIGR03700 mena_SCO4494 putativ 21.7 6.9E+02 0.015 23.7 9.6 114 59-174 82-208 (351)
252 PLN03055 AMP deaminase; Provis 21.6 3.7E+02 0.0081 27.6 7.4 62 293-372 481-542 (602)
253 cd00954 NAL N-Acetylneuraminic 21.5 5.7E+02 0.012 23.3 8.4 50 124-176 26-79 (288)
254 PF06115 DUF956: Domain of unk 21.5 78 0.0017 24.4 2.1 70 364-448 13-82 (118)
255 COG0329 DapA Dihydrodipicolina 21.3 6.6E+02 0.014 23.2 11.4 111 56-174 22-137 (299)
256 cd00959 DeoC 2-deoxyribose-5-p 21.0 2E+02 0.0043 24.8 4.9 103 57-172 15-121 (203)
257 PRK08508 biotin synthase; Prov 20.8 6.4E+02 0.014 22.9 10.6 112 58-174 42-157 (279)
258 PRK07226 fructose-bisphosphate 20.6 4.1E+02 0.0089 24.0 7.1 106 57-174 37-146 (267)
259 PF03102 NeuB: NeuB family; I 20.3 6.2E+02 0.014 22.6 8.1 32 150-181 52-83 (241)
No 1
>PLN02795 allantoinase
Probab=100.00 E-value=7.1e-58 Score=448.21 Aligned_cols=445 Identities=73% Similarity=1.191 Sum_probs=370.1
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||+|++|++..+.+...++.+++|+.|++|+|||||+|+|+..++...++++....+.++.+|||++++++.
T Consensus 60 ~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~ 139 (505)
T PLN02795 60 IPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPL 139 (505)
T ss_pred EEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCC
Confidence 35799999999999997543211113568999999999999999999998877777889999999999999999999984
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
++.|.......+....+.......+++.++...........+.+.++.+.|+.+++.|+++.+....+..+.+.+.++++
T Consensus 140 ~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~ 219 (505)
T PLN02795 140 NSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALP 219 (505)
T ss_pred CCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 45666777777777766665666777777765443333456677777888999999987664433445678899999999
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.++++|+++.+|+++...+...... ..+......+....|..+|...+.+++.+++.....+..++.++|+.|+++.
T Consensus 220 ~a~~~g~~v~iH~E~~~l~~~~~~~---~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~ 296 (505)
T PLN02795 220 VLAKYGRPLLVHAEVVSPVESDSRL---DADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDA 296 (505)
T ss_pred HHHHhCCEEEEecCChhHhhhhhhh---hcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCCh
Confidence 9999999999999998764422110 1122222334677899999999999999999765555556899999999985
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
.++++.++++++.|..+++++||||+.++.+.+..++..++++||+|...+++.+|+++.+|...+++|||.|++...+.
T Consensus 297 ~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~ 376 (505)
T PLN02795 297 ESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKL 376 (505)
T ss_pred HHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhc
Confidence 58999999999999999999999999999988877788999999999999999999999999999999999999988887
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 401 (450)
....+|+.++.|+.+++..++.++....+.++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+++....
T Consensus 377 ~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l~~~v~~~s~~pA~~~gl~~~G~l~~G~~ADlvi~d~~~~~~v~~~~ 456 (505)
T PLN02795 377 LEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESY 456 (505)
T ss_pred cCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEcCCcceEECcch
Confidence 66667999999999999999999988888899999999999999999999966899999999999999999888887652
Q ss_pred CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050 402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 449 (450)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~ 449 (450)
.+.+...+++||.|..+.++|.+|+++|++||++|+++.+..|+++.+
T Consensus 457 ~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~ 504 (505)
T PLN02795 457 PIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHAKQACGSPILA 504 (505)
T ss_pred hhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEcCCCCCeEecC
Confidence 234444238999999999999999999999999999997788999875
No 2
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.8e-57 Score=425.90 Aligned_cols=412 Identities=36% Similarity=0.538 Sum_probs=368.0
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
+.+||.|++|+|++|+...... .+.+++|+.|++|+||+||.|+|+..+++.+++++.++.+.+++.|+|++++||
T Consensus 17 ~~~di~i~~g~I~~Ig~~l~~~---~~~~iiD~~g~~v~PG~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmP- 92 (430)
T COG0044 17 EVADILIKDGKIAAIGKNLEPT---SGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMP- 92 (430)
T ss_pred eEecEEEECCEEEEeccCCCCC---CCCcEEECCCCEEccCeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECC-
Confidence 4689999999999999874432 478999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
++.|.....+.+....+.+.....+++.+++++...+....+...... ..+++.|+..+. +..+.+.+++.++
T Consensus 93 nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~---~~g~~~F~~~~~----~~~~~~~~~~~~~ 165 (430)
T COG0044 93 NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV---EAGFKGFMDDST----GALDDDVLEEALE 165 (430)
T ss_pred CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh---ccceEEEecCCc----CcCCHHHHHHHHH
Confidence 999998999999999999988999999999998887765332222222 456677765543 4688999999999
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.+...|..+.+|+++...+...+.. .+......++...|..+|...+.+.+++++.+ +.++|+.|+++.
T Consensus 166 ~~~~~~~~~~~H~Ed~~~~~~~~~~----~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~-------g~~vhi~HiSt~ 234 (430)
T COG0044 166 YAAELGALILVHAEDDDLIAEGVMN----EGLRAPELGLAGRPPIAEASAIARDLELARAT-------GARVHICHISTK 234 (430)
T ss_pred HHHhcCCeEEEecCChhHhhhHHHh----cCccchhhccCCCChHHHHHHHHHHHHHHHHh-------CCcEEEEEcCCH
Confidence 9999999999999999876655553 34555556778889999999999999999977 899999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
++++.++.++..|++++++++|||++++.+++..++..++++||+|...++..+|+++..|...+++|||.|+....+.
T Consensus 235 -~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~ 313 (430)
T COG0044 235 -ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKR 313 (430)
T ss_pred -HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhc
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999999999885
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 401 (450)
. .|..++.|+.+++..++.++.++.+..+|+++++++.|.|||++||++..|.|++|+.|||+|+|.+.++++..+
T Consensus 314 ~---~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~~~g~i~~G~~ADl~lvD~~~~~~i~~~- 389 (430)
T COG0044 314 L---PFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRAE- 389 (430)
T ss_pred c---chhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCCCCCcccCCCccCEEEEcCCCCeEEchh-
Confidence 2 399999999999999999999777888999999999999999999995578899999999999999999999988
Q ss_pred CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050 402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 441 (450)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 441 (450)
.+.++.. ++||+|..+.+.|.+|+++|+++|++++....
T Consensus 390 ~~~sk~~-~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~~~ 428 (430)
T COG0044 390 ELYSKAK-NSPFEGFELKGRVVATILRGKVVYEDGEVIAK 428 (430)
T ss_pred hhccccC-CCCcCCCEEeeeEEEEEECCEEEEECCcEecC
Confidence 8999999 99999999999999999999999999986643
No 3
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=1.6e-55 Score=429.67 Aligned_cols=427 Identities=39% Similarity=0.680 Sum_probs=361.4
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|.|+||+|++|++.... +..++||++|++|+|||||+|+|+..++...++++.+..+.++++|+|++++++.+
T Consensus 20 ~~~v~i~~G~I~~i~~~~~~----~~~~~iD~~g~~vlPG~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~ 95 (451)
T PRK06189 20 RADIGIKNGKIAEIAPEISS----PAREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLN 95 (451)
T ss_pred EEEEEEECCEEEEecCCCCC----CCCeEEECCCCEEecCEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCC
Confidence 57999999999999875331 34678999999999999999999988776678889999999999999999999855
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHH
Q 013050 83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSV 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (450)
+.|.....+.+....+.+.....+++.++...... ..+.+.++.+.|+.+++.|+.+.+..+.+..+...+.+.++.
T Consensus 96 t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~l~~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~ 172 (451)
T PRK06189 96 SIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKE 172 (451)
T ss_pred CCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc---CHHHHHHHHHcCCcEEEEEccccCCCCcCcCCHHHHHHHHHH
Confidence 55667777778777777777778888887544322 356788888899999999876543333445677889999999
Q ss_pred HHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh
Q 013050 163 LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242 (450)
Q Consensus 163 a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~ 242 (450)
+++.+..+.+|+++...+..... .....+......++...|..+|...+.+++.++++. +.++|+.|+++.
T Consensus 173 ~~~~~~~~~~H~e~~~~~~~~~~-~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~-------g~~~hi~HiSt~- 243 (451)
T PRK06189 173 IAALGKILALHAESDALTRHLTT-QARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET-------GCPLHFVHISSG- 243 (451)
T ss_pred HHhcCCeEEEECCChHHHHHHHH-HHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-
Confidence 99999999999988776442211 111222223334667789999999999999999977 999999999998
Q ss_pred HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcc
Q 013050 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 322 (450)
Q Consensus 243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~ 322 (450)
++++.+++++..|..+++++|||++.++.+.+...+..++++||++...+++.+|+++++|..++++||+.|+....+.
T Consensus 244 ~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~- 322 (451)
T PRK06189 244 KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKE- 322 (451)
T ss_pred HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcC-
Confidence 9999999999999999999999999999988777788899999999999999999999999999999999999877653
Q ss_pred cCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050 323 DEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401 (450)
Q Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 401 (450)
..+|+..+.|+.+++..++.+++.. .+.++|++++++++|.|||++||+++.|+|++|++|||+|+|.+.++++..+
T Consensus 323 -~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~- 400 (451)
T PRK06189 323 -GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKE- 400 (451)
T ss_pred -cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEECHH-
Confidence 2468899999999999999988775 5667999999999999999999996589999999999999999888888766
Q ss_pred CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050 402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 449 (450)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~ 449 (450)
++.+... ++||.|..+.++|..|+++|++||++|++++...|+++++
T Consensus 401 ~~~~~~~-~~p~~g~~~~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~ 447 (451)
T PRK06189 401 DLFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQDGEVFPPPRGQLLRP 447 (451)
T ss_pred HhhhcCC-CCCcCCcEEEeEEEEEEECCEEEEECCEEccCCCCcEecC
Confidence 6666777 9999999999999999999999999999998889999986
No 4
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=1.8e-55 Score=423.19 Aligned_cols=406 Identities=24% Similarity=0.373 Sum_probs=346.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..++...++++.+..+.++.+||||+++++
T Consensus 19 ~~~~I~I~~g~I~~i~~~~~~---~~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~p- 94 (425)
T PRK07627 19 RQADLYVAAGKIAAIGQAPAG---FNADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPP- 94 (425)
T ss_pred ceeEEEEECCEEEEecCCCcC---CCCCeEEECCCCEEeccEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeCC-
Confidence 357999999999999875321 1357899999999999999999999888777788999999999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (450)
++.+.......+............+++..++.+... ....+.++.++.+.|+.+++.+ ..+..+...+.+.+
T Consensus 95 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~~G~~~fk~~-------~~~~~~~~~l~~~~ 167 (425)
T PRK07627 95 DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTEAGCVGFSQA-------NVPVVDTQVLLRAL 167 (425)
T ss_pred CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHhCCEEEEEcC-------CcccCCHHHHHHHH
Confidence 777777766666555555554445665556554433 4456778888888999999963 22346778899999
Q ss_pred HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050 161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240 (450)
Q Consensus 161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~ 240 (450)
+.+++.|.++.+|+++.......+. +.+......+....|..+|...+.+++.+++.+ +.++|+.|+++
T Consensus 168 ~~~~~~~~~v~~H~E~~~~~~~~~~----~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~HvSs 236 (425)
T PRK07627 168 QYASTFGFTVWLRPLDAFLGRGGVA----ASGAVASRLGLSGVPVAAETIALHTIFELMRVT-------GARVHLARLSS 236 (425)
T ss_pred HHHHhcCCEEEEecCChhhhhCCCc----CCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCC
Confidence 9999999999999998765433222 333334445567889999999999999999987 99999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
. ++++.++++++.|..+++++||||++++.+.+..++..++++||+|...+++.+|+++.+|..++++|||+|.....+
T Consensus 237 ~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k 315 (425)
T PRK07627 237 A-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEK 315 (425)
T ss_pred H-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHc
Confidence 9 999999999999999999999999999998887778899999999999999999999999999999999999976665
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 400 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 400 (450)
. .+|+..+.|+.+.+..++.++....+.++|++++++++|.|||+++|+ +.|+|++|+.|||+++|.+.++++..+
T Consensus 316 ~---~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~-~~G~l~~G~~ADlvv~d~~~~~~v~~~ 391 (425)
T PRK07627 316 L---LPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGL-PAGRLAEGAPADLCVFDPDAHWRVEPR 391 (425)
T ss_pred c---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC-CCCcccCCCcCCEEEECCCCcEEEChh
Confidence 3 469999999999999999888877788999999999999999999999 579999999999999999988999887
Q ss_pred CCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050 401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 436 (450)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 436 (450)
++.++.. ++||.+..+.++|.+||++|++||++.
T Consensus 392 -~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~~ 425 (425)
T PRK07627 392 -ALKSQGK-NTPFLGYELPGRVRATLVAGQVAFERR 425 (425)
T ss_pred -hccccCC-CCCCcCCEeeeEEEEEEECCEEEeecC
Confidence 7888888 999999999999999999999999863
No 5
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=2e-55 Score=429.50 Aligned_cols=426 Identities=28% Similarity=0.420 Sum_probs=354.9
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCCcccchHHHHHHHHhCCceEEEeC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
.++|+|+||+|++|++.. + .+.++||++|++|+|||||+|+|+..+ +....+++.+..+.++.+|||+++++
T Consensus 21 ~~~i~I~dg~I~~i~~~~--~---~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~ 95 (477)
T PRK13404 21 QADIGIRGGRIAALGEGL--G---PGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPF 95 (477)
T ss_pred EEEEEEECCEEEEecCCC--C---CCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEc
Confidence 479999999999998642 1 356899999999999999999999764 34456789999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccch-HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (450)
+ .+.+.....+.+............++++++........+.. +++.++.+.|+.++|.|+.+.+ +..+.+++.+
T Consensus 96 ~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G~~~iKi~~~~~~----~~~~~~~l~~ 170 (477)
T PRK13404 96 A-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDD----LKLDDRQILD 170 (477)
T ss_pred c-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHHcCCCEEEEEecCCC----CCCCHHHHHH
Confidence 7 55555566666666666666666778877765554444433 6788889999999999875422 3567899999
Q ss_pred HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
+++.|+++|.+|.+|+++...+...... ....+......++...|..+|...+.+++.+++++ +.++|+.|+
T Consensus 171 ~~~~a~~~g~~V~~Hae~~~~i~~~~~~-~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~-------g~~~hi~Hv 242 (477)
T PRK13404 171 VLAVARRHGAMVMVHAENHDMIAWLTKR-LLAAGLTAPKYHAISRPMLAEREATHRAIALAELV-------DVPILIVHV 242 (477)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEEC
Confidence 9999999999999999988775421111 01222333344567789999999999999999987 999999999
Q ss_pred CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~ 315 (450)
++. .+++.++++++.|..+++++|||++.++.+.+.. ++..++++||++...+++.+|+++..|..++++|||.|.
T Consensus 243 s~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~ 321 (477)
T PRK13404 243 SGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPF 321 (477)
T ss_pred CCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCC
Confidence 998 9999999999999999999999999999988765 678899999999999999999999999999999999999
Q ss_pred Chhhh---ccc--CCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEE
Q 013050 316 VPELK---LLD--EGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV 388 (450)
Q Consensus 316 ~~~~~---~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv 388 (450)
....+ +.. ..+|+.++.|+.+++..++.+++... ..++|++++++++|.|||++||+ ++.|+|++|+.|||++
T Consensus 322 ~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvi 401 (477)
T PRK13404 322 RFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAI 401 (477)
T ss_pred CcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEE
Confidence 75433 111 23688899999999999999998754 55799999999999999999999 7789999999999999
Q ss_pred EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050 389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 449 (450)
Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~ 449 (450)
+|.+.++++... .+.+... ++||.+..+.++|.+|||+|++||+||+++.. ..|+++++
T Consensus 402 vd~~~~~~v~~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~ 461 (477)
T PRK13404 402 WDPDREVTITNA-DLHHAAD-YTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLAR 461 (477)
T ss_pred EcCCccEEEchH-HhcccCC-CCcccceEEeeeEEEEEECCEEEEECCEEecCCCceeEecC
Confidence 999999999876 6777777 99999999999999999999999999999954 57999875
No 6
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=9.6e-55 Score=422.09 Aligned_cols=424 Identities=36% Similarity=0.643 Sum_probs=362.4
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|+|+||+|++|++... .+.++||+.|++++|||||+|+|+..++....+++.+..+.+++.|||++.+++.+
T Consensus 20 ~~~i~I~dg~I~~i~~~~~-----~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~ 94 (449)
T PRK08044 20 VVDIAVKGGKIAAIGQDLG-----DAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLN 94 (449)
T ss_pred EEEEEEECCEEEEecCCCC-----CCCeEEECCCCEEcCCeeccccccCCCCccccccHHHHHHHHHhCCceEEECCccC
Confidence 4799999999999986432 25689999999999999999999988877667889999999999999999999856
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCC----CCCCCCCHHHHHH
Q 013050 83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKE 158 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~l~~ 158 (450)
+.|.....+.+....+.....+.+++.+++++... ...++.++.+.|+.++|.|+.+.+. .+.+..+...+.+
T Consensus 95 ~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (449)
T PRK08044 95 QLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYK 171 (449)
T ss_pred CCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHHHcCceEEEEEecccCcccccCCccCcCHHHHHH
Confidence 66778888888888888877888888888766533 4667788888999999999765321 1123346678889
Q ss_pred HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
.++.+++.|.++.+|+++...+.... ......+......++...|..+|.+.+.+++.++++. +.++|+.|+
T Consensus 172 ~~~~~~~~~~~v~~H~E~~~l~~~~~-~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~-------g~~vhi~Hi 243 (449)
T PRK08044 172 GAQKLGELGQPVLVHCENALICDELG-EEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVCHI 243 (449)
T ss_pred HHHHHHhcCCEEEEecCCHHHHHHHH-HHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeC
Confidence 99999999999999999988755321 1111222333444567789999999999999999987 999999999
Q ss_pred CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChh
Q 013050 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE 318 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~ 318 (450)
++. ++++.++++++.|..+++++|+|++.++.+.+...+..++++||+|...+++.+|+++..|..++++|||.|....
T Consensus 244 St~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~ 322 (449)
T PRK08044 244 SSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPE 322 (449)
T ss_pred CCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChH
Confidence 998 8999999999999999999999999999998877788999999999999999999999999999999999998766
Q ss_pred hhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceee
Q 013050 319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 397 (450)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~ 397 (450)
.+. .+|+.++.|+.+.+..++.++..+. ..+++++++++++|.|||++||+++.|+|++|++|||+++|.+..|++
T Consensus 323 ~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~~~G~i~~G~~ADlvi~d~~~~~~v 399 (449)
T PRK08044 323 MKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVL 399 (449)
T ss_pred Hcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCCCCcCCCCCccCEEEECCCCcEEE
Confidence 653 4799999999999999999887654 668999999999999999999995479999999999999999999999
Q ss_pred CCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCcccc
Q 013050 398 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPIL 448 (450)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~ 448 (450)
..+ .+.++.. ++||+|..+.++|.+||++|++||++|+.+ .+..|+|++
T Consensus 400 ~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 400 KNE-DLEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred CHH-HccccCC-CCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCcccCC
Confidence 888 8888888 999999999999999999999999999854 667899985
No 7
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=1e-54 Score=423.88 Aligned_cols=427 Identities=46% Similarity=0.767 Sum_probs=359.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+..++...++++.+..+.++++|||++++++.
T Consensus 16 ~~~~v~i~dg~I~~i~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp~ 91 (443)
T TIGR03178 16 READVGVKGGKIAAIGPDILG----PAAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPL 91 (443)
T ss_pred eEEEEEEECCEEEEeeCCCCC----CCCeEEECCCCEEeccEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECCC
Confidence 357999999999999875321 3568999999999999999999998877667888999999999999999999974
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
++.|.....+.+....+.......+++..+++.. ....+++..+.+.|+.+++.|+.+.+....+..+.+.+.++++
T Consensus 92 ~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~ 168 (443)
T TIGR03178 92 NSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMR 168 (443)
T ss_pred CCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 4556666777777777776666677887765443 2446678888889999999997664433345678899999999
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.++++|+++.+|+++...+..... .....+......++...|..++.+.+.++++++++. +.++|+.|+++.
T Consensus 169 ~a~~~g~~v~~H~E~~~~~~~~~~-~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~-------g~~vhi~Hiss~ 240 (443)
T TIGR03178 169 ELARLGQLLLVHAENPAITSALGE-EAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT-------GCRVHVVHLSSA 240 (443)
T ss_pred HHHhcCCeEEEeccChHHHHHHHH-HHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH
Confidence 999999999999988766443211 111233334445567789999999999999999987 899999999998
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
++++.++++++.|+.++++++||++.++.+.+...+..++++||++...++..+|++++.|..++++||+.|.....+.
T Consensus 241 -~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~ 319 (443)
T TIGR03178 241 -EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR 319 (443)
T ss_pred -HHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHHcC
Confidence 8999999999999999999999999999888777788899999999999999999999999999999999999876653
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 400 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 400 (450)
.++|+.++.|+.+++..++.++... .+.++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+.++++...
T Consensus 320 --~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~~~G~l~~G~~Ad~vi~d~~~~~~~~~~ 397 (443)
T TIGR03178 320 --AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPD 397 (443)
T ss_pred --cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH
Confidence 3578899999999999999888766 4678999999999999999999995579999999999999999887888766
Q ss_pred CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050 401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448 (450)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~ 448 (450)
.+.+... ++||.+..+.++|.+||++|++||++|++++...|++|.
T Consensus 398 -~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~g~~~~ 443 (443)
T TIGR03178 398 -DLYYRHK-VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL 443 (443)
T ss_pred -HhhhcCC-CCCcCCcEEeeEEEEEEECCEEEEECCeeccCCCCcccC
Confidence 5666777 999999999999999999999999999999777999873
No 8
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=3.2e-54 Score=422.53 Aligned_cols=430 Identities=51% Similarity=0.872 Sum_probs=360.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
.+++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+..++...++++.+..+.++.+||||+++++.
T Consensus 16 ~~~~v~I~~g~I~~i~~~~~~~---~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p~ 92 (447)
T cd01315 16 READIAVKGGKIAAIGPDIANT---EAEEVIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPL 92 (447)
T ss_pred eEeEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEeccEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCCC
Confidence 4579999999999998764311 3678999999999999999999998777777888999999999999999999984
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
+..|.......+....+.......+++..++.... ...+++.++.+.|+.+++.++.+......+..+.+.+.++++
T Consensus 93 ~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~ 169 (447)
T cd01315 93 NSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMK 169 (447)
T ss_pred CCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecC---CCHHHHHHHHHcCCcEEEEEecccCCCCcccCCHHHHHHHHH
Confidence 55566677777777777666556777777654332 246677888889999999987654433344578899999999
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.++++|+++.+|+++...+........ ..+......+....|...+...+.+++.++++. +.++|+.|+++.
T Consensus 170 ~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~-------g~~ihi~h~s~~ 241 (447)
T cd01315 170 ELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDYLASRPVFTEVEAIQRILLLAKET-------GCRLHIVHLSSA 241 (447)
T ss_pred HHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHhhccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH
Confidence 999999999999998877554443222 222223344567789999999999999999977 899999999998
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
.+++.+++++..|..+++++++|++.++.+.+...+..++++||++...++..+|++++.|..++++||+.|.....+.
T Consensus 242 -~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~ 320 (447)
T cd01315 242 -EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKL 320 (447)
T ss_pred -HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHHhc
Confidence 9999999999999999999999999999888877788899999999999999999999999999999999999877665
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN 399 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~ 399 (450)
....+|+.++.|+.+.+..++.++..+. ..++|++++++++|.|||+++|+ ++.|+|++|++|||+|+|.+..+.+..
T Consensus 321 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~ 400 (447)
T cd01315 321 LGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDA 400 (447)
T ss_pred cCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcH
Confidence 3345788889999999999988876654 56899999999999999999999 578999999999999999988787766
Q ss_pred CCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050 400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448 (450)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~ 448 (450)
+ .+.+... ++||.+..+.++|.+||++|++||++|+++....||+|+
T Consensus 401 ~-~~~~~~~-~~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~~G~~~~ 447 (447)
T cd01315 401 E-DLYYKNK-ISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL 447 (447)
T ss_pred H-HccccCC-CCCccCeEEeeeEEEEEECCEEEEECCeEccCCCceEeC
Confidence 5 5566677 999999999999999999999999999999766899985
No 9
>PLN02942 dihydropyrimidinase
Probab=100.00 E-value=2.2e-54 Score=424.21 Aligned_cols=427 Identities=25% Similarity=0.339 Sum_probs=347.1
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--CCcccchHHHHHHHHhCCceEEEeCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMP 80 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--~~~~~~~~~~~~~~~~~GvT~~~~~~ 80 (450)
.++|+|+||+|++|++....+ ...++||++|++|+|||||+|+|+..+. ....+++.++++.++.+||||+.|+.
T Consensus 22 ~~~i~I~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~~ 98 (486)
T PLN02942 22 LADVYVEDGIIVAVAPNLKVP---DDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFV 98 (486)
T ss_pred EeEEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeCC
Confidence 478999999999998754321 2568999999999999999999998763 44678899999999999999999985
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050 81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEG 159 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (450)
... .......+......+. +..++++.+...........+++.++.+ .|+.+++.++.+.+ ....+.+.+.+.
T Consensus 99 -~~~-~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~---~~~~~~~~l~~~ 172 (486)
T PLN02942 99 -IPV-NGNLLAGYEAYEKKAE-KSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKG---SLMVTDELLLEG 172 (486)
T ss_pred -CCC-CCCHHHHHHHHHHHHh-hcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCC---CCCCCHHHHHHH
Confidence 222 1222455555444444 4457777765544333333456666644 68888998876532 234578999999
Q ss_pred HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239 (450)
Q Consensus 160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~ 239 (450)
++.++++|.++.+|+++........+... ..+......+....|..+|...+.+++.++... +.++|+.|++
T Consensus 173 ~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~-------g~~~~i~H~s 244 (486)
T PLN02942 173 FKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGPEGHALSRPPLLEGEATARAIRLAKFV-------NTPLYVVHVM 244 (486)
T ss_pred HHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhhhhccCCchHHHHHHHHHHHHHHHh-------CCCEEEEECC
Confidence 99999999999999988776554443221 112222233456688899999999999999977 9999999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~ 315 (450)
+. ++++.++.+++.|..++++++|+++.++.+.+.. .+..++++||+|...+++.+|++++.|+.++++||+.|+
T Consensus 245 ~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~ 323 (486)
T PLN02942 245 SI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPF 323 (486)
T ss_pred CH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCC
Confidence 98 8999999999999999999999999999877653 577889999999999999999999999999999999999
Q ss_pred ChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhc-CCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCC
Q 013050 316 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA 393 (450)
Q Consensus 316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~ 393 (450)
+...++...++|+..+.|+.+.+..++.+++.+.+. .+|++++++++|.|||+++|+ +++|+|++|++|||+++|.++
T Consensus 324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~ 403 (486)
T PLN02942 324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNS 403 (486)
T ss_pred ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCc
Confidence 988887766689999999999999898888766544 599999999999999999999 678999999999999999999
Q ss_pred ceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050 394 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 449 (450)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~ 449 (450)
++++... .+.+... ++||.+..+.++|..|||+|++||++|+++.. ..|+++++
T Consensus 404 ~~~v~~~-~~~s~~~-~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~ 458 (486)
T PLN02942 404 TFTISAK-THHSRID-TNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEM 458 (486)
T ss_pred cEEEcHH-HccccCC-CCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEecC
Confidence 9999866 5566667 99999999999999999999999999999744 57999875
No 10
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=4.7e-54 Score=413.90 Aligned_cols=406 Identities=23% Similarity=0.319 Sum_probs=348.5
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|+|+||+|++|++.........+.++||++|++|+|||||+|+|+..++..+.+++.+..+.++.+|||+++++| +
T Consensus 22 ~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p-~ 100 (429)
T PRK09059 22 IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-D 100 (429)
T ss_pred ceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEecc-C
Confidence 579999999999998753211001356899999999999999999999877666778899999999999999999999 7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
+.|.....+.+....+.......+++.+++.+... +.+.+.++..+.+.|+.+++.. +.+..+...+.++++
T Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~~f~~~-------~~~~~~~~~l~~~~~ 173 (429)
T PRK09059 101 TDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTDG-------RRSVANTQVMRRALT 173 (429)
T ss_pred CCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHHhcCcEEEecC-------CcccCCHHHHHHHHH
Confidence 77777888888888777777778888888877654 4456777888888899888742 223456677889999
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.+++.|.++.+|+++...+..... +.+......+....|..+|...+.+++.+++.+ +.++|+.|+++.
T Consensus 174 ~~~~~~~~v~~H~E~~~l~~~~~~----~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~-------~~~~hi~hvs~~ 242 (429)
T PRK09059 174 YARDFDAVIVHETRDPDLGGNGVM----NEGLFASWLGLSGIPREAEVIPLERDLRLAALT-------RGRYHAAQISCA 242 (429)
T ss_pred HHHhcCCEEEEecCChhhhcCCCc----CCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEecCCH
Confidence 999999999999999886443222 222222334457789999999999999999977 999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
++++.++++++.|+.+++++||||++++.+.+..++..++++||+|...++..+|+++.+|...+++|||.|+....+.
T Consensus 243 -~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~ 321 (429)
T PRK09059 243 -ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKR 321 (429)
T ss_pred -HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCc
Confidence 9999999999999999999999999999988877888999999999999999999999999999999999999988764
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 401 (450)
.+|+..+.|+.+++..++.++....+.++++++++++.|.|||+++|++ .|+|++|+.|||+++|.+..|++..+
T Consensus 322 ---~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~gl~-~G~l~~G~~ADlvl~d~~~~~~v~~~- 396 (429)
T PRK09059 322 ---LPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFGLP-AGTLKPGAPADIIVIDLDEPWVVDPE- 396 (429)
T ss_pred ---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-cCcccCCCcCCEEEECCCCCEEECcc-
Confidence 3699999999999999999987767778999999999999999999995 69999999999999999999999988
Q ss_pred CcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
.+.+... ++||.|..+.++|..||++|++||+
T Consensus 397 ~~~s~~~-~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 397 DLKSRSK-NTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred cCccCCC-CCCCCCCEEeeEEEEEEECCEEEee
Confidence 8888888 9999999999999999999999986
No 11
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=3.9e-54 Score=410.61 Aligned_cols=385 Identities=25% Similarity=0.310 Sum_probs=326.6
Q ss_pred EEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCC
Q 013050 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 85 (450)
Q Consensus 6 V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~ 85 (450)
|+|+||||++|++.. .+.++||+.|++|+|||||+|+|+..++.. .+++.++++.++++|||++++|| ++.|
T Consensus 1 i~I~dG~I~~i~~~~------~~~~viDa~g~~vlPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P 72 (386)
T PRK08417 1 IRIKDGKITEIGSDL------KGEEILDAKGKTLLPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTP 72 (386)
T ss_pred CEEECCEEEEecCCC------CCCeEEECCCCEEccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCC
Confidence 689999999998653 256899999999999999999999877655 48899999999999999999999 8888
Q ss_pred CCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh
Q 013050 86 STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 165 (450)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 165 (450)
.....+.+....+..... ...+..+.... ...+..+++..+.+.|+..++.+. ..+.+.+.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~i~~l~~~Gv~~~k~~~---------~~~~~~l~~~~~~a~~ 141 (386)
T PRK08417 73 AIDNEIALELINSAQREL-PMQIFPSIRAL-DEDGKLSNIATLLKKGAKALELSS---------DLDANLLKVIAQYAKM 141 (386)
T ss_pred CCCCHHHHHHHHHHhhcc-CCcEEEEEEEE-CCCccHHHHHHHHHCCCEEEECCC---------CCCHHHHHHHHHHHHH
Confidence 888877777766655432 11122222222 234457788888899999887631 3578889999999999
Q ss_pred cCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHH
Q 013050 166 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245 (450)
Q Consensus 166 ~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~ 245 (450)
.|++|.+|+++...+...+.. .+......++...|..+|...+.+++++++++ +.++|+.|+++. +++
T Consensus 142 ~g~~V~~HaEd~~~~~~~~~~----~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~~~ 209 (386)
T PRK08417 142 LDVPIFCRCEDSSFDDSGVMN----DGELSFELGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-RSL 209 (386)
T ss_pred cCCEEEEeCCCHHHhhHHHHh----cChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHH
Confidence 999999999998776544432 33334445567889999999999999999987 999999999999 999
Q ss_pred HHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCC
Q 013050 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 325 (450)
Q Consensus 246 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~ 325 (450)
+.++++++.|..+++++||||++++.+.+..++..++++||+|...+++.+|+++.+|...+++|||.|+....+. .
T Consensus 210 ~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~---~ 286 (386)
T PRK08417 210 ELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKD---L 286 (386)
T ss_pred HHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---C
Confidence 9999999999999999999999999988877788899999999999999999999999999999999999877764 3
Q ss_pred CccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcc
Q 013050 326 NFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH 404 (450)
Q Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~ 404 (450)
+|+.++.|+.+++..++.++..+. +.+++++++++++|.|||++||+++ |+|++|+.|||+++|.+.++.+...
T Consensus 287 ~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~-G~l~~G~~ADlvi~d~~~~~~~~~~---- 361 (386)
T PRK08417 287 AFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNS-GEIEVGKEADLVLFDPNESTIIDDN---- 361 (386)
T ss_pred CHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCeEeCCC----
Confidence 689999999999999999998765 5569999999999999999999954 9999999999999999987776543
Q ss_pred cCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 405 MKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 405 ~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
++||.|..+.++|..||++|++||+
T Consensus 362 -----~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 362 -----FSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred -----CCCccCCEEeccEEEEEECCEEEeC
Confidence 8999999999999999999999984
No 12
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=7.1e-54 Score=410.77 Aligned_cols=397 Identities=27% Similarity=0.385 Sum_probs=348.1
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||+|++|++..... ..+.++||+.|++|+|||||+|+|+..++..+.+++.+..+.+++.|||+++++|
T Consensus 20 ~~~~v~I~dg~I~~i~~~~~~~--~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~p- 96 (418)
T PRK07369 20 RIADVLIEDGKIQAIEPHIDPI--PPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILP- 96 (418)
T ss_pred cceeEEEECCEEEEecCCcccC--CCCCEEEECCCCEEecCEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECC-
Confidence 3479999999999998654211 1356899999999999999999999988888889999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (450)
++.|.....+.+....+.+...+.+++.+++.+.... ...++++.++.+.|+.+++.+ .+..+...+.+.+
T Consensus 97 n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv~~f~~~--------~~~~~~~~l~~~~ 168 (418)
T PRK07369 97 DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTDG--------QPLENLALLRRLL 168 (418)
T ss_pred CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHHHCCCEEEECC--------CcCCCHHHHHHHH
Confidence 8888888899998888888877889999988876543 345778888888899988731 2345677888999
Q ss_pred HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050 161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240 (450)
Q Consensus 161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~ 240 (450)
+.+++.|.++.+|+++...+...+. +.+......+....|..+|...+.+++.+++.+ +.++|+.|+++
T Consensus 169 ~~~~~~~~~v~~H~Ed~~l~~~~~~----~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~-------~~~~hi~HvSs 237 (418)
T PRK07369 169 EYLKPLGKPVALWPCDRSLAGNGVM----REGLLALRLGLPGDPASAETTALAALLELVAAI-------GTPVHLMRIST 237 (418)
T ss_pred HHHHhcCCeEEEecCChhhhhcCcc----cCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCC
Confidence 9999999999999999887654433 333334445567889999999999999999987 99999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
. ++++.++++++.|..+++++||||++++.+.+..++..++++||+|...+++.+|+++.+|...+++|||.|+....+
T Consensus 238 ~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K 316 (418)
T PRK07369 238 A-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEK 316 (418)
T ss_pred H-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHc
Confidence 9 999999999999999999999999999999887778889999999999999999999999999999999999998877
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 399 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~ 399 (450)
. .+|+.++.|+.+.+..++.+++.+. ..+++++++++++|.|||++||++ .|+|++|+.|||+++|.+..|++..
T Consensus 317 ~---~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~-~G~i~~G~~ADlvi~d~~~~~~v~~ 392 (418)
T PRK07369 317 T---VAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE-PPSLAPGQPAELILFDPQKTWTVSA 392 (418)
T ss_pred c---CCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC-cCcccCCCcCCEEEEcCCCCEEECc
Confidence 4 3699999999999999999997655 567999999999999999999995 5999999999999999999999998
Q ss_pred CCCcccCCCCccccCCceEeeEEEEEEE
Q 013050 400 DHPVHMKHPSISAYLGRRLSGKVLATIS 427 (450)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v 427 (450)
+ .+.+... ++||+|..+.++|..|||
T Consensus 393 ~-~~~s~~~-~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 393 Q-TLHSLSR-NTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred c-cccCCCC-CCCCCCCEeeeEEEEEEC
Confidence 8 8888888 999999999999999986
No 13
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=2.7e-53 Score=416.00 Aligned_cols=422 Identities=30% Similarity=0.447 Sum_probs=344.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC--CcccchHHHHHHHHhCCceEEEeC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~--~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
.+++|+|+||+|++|++....+ .+.++||+.|++|+|||||+|+|+..+.. ...+++....+.++.+|||+++++
T Consensus 15 ~~~~i~I~~g~I~~ig~~~~~~---~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~ 91 (447)
T cd01314 15 FKADILIEDGKIVAIGPNLEAP---GGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDF 91 (447)
T ss_pred eeeeEEEECCEEEEeeCCCCCC---CCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeC
Confidence 3578999999999998753221 24689999999999999999999976542 456778888999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 159 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (450)
+ .+.+.....+.+....+.......+++..+...........+.+.++.+.|+.+++.++.+.. ...++.+.++++
T Consensus 92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~g~~~ik~~~~~~~---~~~~s~~~l~~~ 167 (447)
T cd01314 92 A-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKG---LLMVDDEELLDV 167 (447)
T ss_pred C-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHHcCCCEEEEEeccCC---CCCCCHHHHHHH
Confidence 7 555544555555555554444555666655444333334466777777788888998875532 245789999999
Q ss_pred HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239 (450)
Q Consensus 160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~ 239 (450)
++.|+++|+++.+|+++...+........ ..+......+....|...|...+.+++.+++.. +.++|+.|++
T Consensus 168 ~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~~~~~H~s 239 (447)
T cd01314 168 LKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPEYHALSRPPEVEAEATARAIRLAELA-------GAPLYIVHVS 239 (447)
T ss_pred HHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCC
Confidence 99999999999999987766554443210 112222233456678889999999999999866 8999999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC--C-CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCC
Q 013050 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP--D-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 316 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~ 316 (450)
+. ++++.++.+++.|..+++++||+++.++.+.+. . .+...+++||++...++..+|++++.|+.++++||+.|++
T Consensus 240 ~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~ 318 (447)
T cd01314 240 SK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN 318 (447)
T ss_pred CH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 98 999999999999999999999999999887762 2 5678899999999999999999999999999999999999
Q ss_pred hhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCc
Q 013050 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAE 394 (450)
Q Consensus 317 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~ 394 (450)
...++....+|+.++.|+.+++..++.+++... ...++++++++++|.|||++||+ +++|+|++|++|||+|+|.+.+
T Consensus 319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~ 398 (447)
T cd01314 319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAE 398 (447)
T ss_pred HHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcC
Confidence 888877656899999999999999999987765 44599999999999999999999 7789999999999999999998
Q ss_pred eeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050 395 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 441 (450)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 441 (450)
+++... ++.+... ++||.+..+.++|.+||++|++||++|+++..
T Consensus 399 ~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v~~~~~~~~~ 443 (447)
T cd01314 399 KTISAD-THHHNVD-YNIFEGMKVKGWPVVTISRGKVVVEDGELVGE 443 (447)
T ss_pred EEecHH-HhhccCC-CCcccCeEEeeeEEEEEECCEEEEECCEEecc
Confidence 988876 6667777 99999999999999999999999999999954
No 14
>PRK08323 phenylhydantoinase; Validated
Probab=100.00 E-value=3.3e-53 Score=417.14 Aligned_cols=426 Identities=28% Similarity=0.433 Sum_probs=350.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--CCcccchHHHHHHHHhCCceEEEeC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
.+++|+|+||+|++|++. .+.++||+.|++|+|||||+|+|+..+. ....+++....+.++++|||+++++
T Consensus 17 ~~~~v~I~~g~I~~i~~~-------~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~ 89 (459)
T PRK08323 17 YKADVLIEDGKIAAIGAN-------LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDF 89 (459)
T ss_pred eEEEEEEECCEEEEEecC-------CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeC
Confidence 357899999999999864 1458999999999999999999997652 2356778888899999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 159 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (450)
+ ...+.....+.+....+.......++++.+........+..+++.++++.|+.+++.++.+.+ .+..+.+++.++
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~s~~~l~~~ 165 (459)
T PRK08323 90 A-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLFMAYKG---ALMLDDDELLRA 165 (459)
T ss_pred c-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHHcCCCEEEEEEecCC---CCCCCHHHHHHH
Confidence 7 555545555555555555555556777666543333444567788888899999998875532 246789999999
Q ss_pred HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239 (450)
Q Consensus 160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~ 239 (450)
++.|+++|.++..|+++...+........ ..+......+....|...+...+.+++++++.+ +.++|+.|++
T Consensus 166 ~~~a~~~g~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~-------~~~~~i~H~s 237 (459)
T PRK08323 166 LQRAAELGALPMVHAENGDAIAYLQAKLL-AEGKTGPEYHALSRPPEVEGEATNRAIMLAELA-------GAPLYIVHVS 237 (459)
T ss_pred HHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCChhhhhccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCC
Confidence 99999999999999987766543332211 222223334566789999999999999999977 8999999999
Q ss_pred ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~ 315 (450)
+. ++++.++.+++.|..+++++||+++.++.+.+.. ++..++++||++...++..+|+++++|+.++++||+.|+
T Consensus 238 ~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~ 316 (459)
T PRK08323 238 CK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316 (459)
T ss_pred CH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence 98 8999999999999999999999999998877643 467789999999999999999999999999999999999
Q ss_pred Chhhhcc-cCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCC
Q 013050 316 VPELKLL-DEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE 392 (450)
Q Consensus 316 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~ 392 (450)
+...++. ...+|+..+.|+.+.+..++.+++.. ....++++++++++|.|||++||+ ++.|+|++|+.|||+|+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~ 396 (459)
T PRK08323 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPN 396 (459)
T ss_pred ChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCC
Confidence 8877653 44578999999999999999998664 455699999999999999999999 77899999999999999999
Q ss_pred CceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050 393 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~ 449 (450)
.++++..+ ++.+... ++||.+..+.++|..|||+|++||++|+++.. ..|++|++
T Consensus 397 ~~~~v~~~-~~~s~~~-~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~ 452 (459)
T PRK08323 397 ATKTISAS-TLHSNVD-YNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKR 452 (459)
T ss_pred cccccCHH-HHhhcCC-CCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeC
Confidence 88888877 7777777 89999999999999999999999999999965 57999976
No 15
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=100.00 E-value=4.6e-53 Score=416.04 Aligned_cols=430 Identities=28% Similarity=0.430 Sum_probs=343.1
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
..++|+|+||+|++|++....+ +..++||++|++|+|||||+|+|+..+ +....+++....+.++++|||+++++
T Consensus 15 ~~~~V~I~dg~I~~Ig~~~~~~---~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~ 91 (454)
T TIGR02033 15 FQADVLIEGGKIVAVGRNLSPP---DAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDF 91 (454)
T ss_pred eEEEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeC
Confidence 3578999999999998753221 245899999999999999999999765 34456778888899999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHH-HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA-LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (450)
+ .+.+.......+....+.......+.++.+......+....+. +..+.+.|+..++.++.+. ..+..+.+.+++
T Consensus 92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~---~~~~~~~~~l~~ 167 (454)
T TIGR02033 92 A-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYK---NLLMVDDEELFE 167 (454)
T ss_pred c-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecC---CCCCCCHHHHHH
Confidence 7 5555445555555555544444456666554332233333333 5556678888899887553 224578999999
Q ss_pred HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
+++.|+++|.++.+|+++............ ..+......+....|...+...+.+++.++... +.++|++|+
T Consensus 168 ~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~-------~~~~~i~H~ 239 (454)
T TIGR02033 168 ILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGPEYHALSRPPESEAEAVARAIALAALA-------NAPLYVVHV 239 (454)
T ss_pred HHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEEC
Confidence 999999999999999977665443332210 112222223455678888888999999999866 899999999
Q ss_pred CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~ 315 (450)
++. .+++.++.+++.|..+++++||+++.++...+.. .+...+++||++...+++.+|+++..|+.+++|||+.|+
T Consensus 240 s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~ 318 (454)
T TIGR02033 240 STA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPF 318 (454)
T ss_pred CCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCC
Confidence 998 8899999999999999999999999998887753 456788899999999999999999999999999999999
Q ss_pred Chhhh-cccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCC
Q 013050 316 VPELK-LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE 392 (450)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~ 392 (450)
+...+ ....+.|+.++.|+.+.+..++.+++... +..++++++++++|.|||++||+ ++.|+|++|+.|||+|+|.+
T Consensus 319 ~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~ 398 (454)
T TIGR02033 319 NFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPN 398 (454)
T ss_pred CHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCC
Confidence 87665 22234688889999999999999987655 45699999999999999999999 66899999999999999999
Q ss_pred CceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050 393 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~ 449 (450)
.++++..+ ++.+... ++||.+..+.++|..|||+|++||++|+++.. ..|+++++
T Consensus 399 ~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~~ 454 (454)
T TIGR02033 399 RTTVISAE-THHDNAD-YNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGSGRFIKR 454 (454)
T ss_pred cCeeechH-HhhccCC-CCcccCeEEeeeEEEEEECCEEEEECCEEecCCCCcceecC
Confidence 98888876 6677777 99999999999999999999999999999965 56999874
No 16
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=100.00 E-value=8.5e-53 Score=405.59 Aligned_cols=405 Identities=34% Similarity=0.495 Sum_probs=346.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
+.++|+|+||||++|++... + .+.++||++|++|+|||||+|+|+..+.....+++.+..+.++.+|||++++++
T Consensus 4 ~~~~v~I~~g~I~~i~~~~~-~---~~~~~ida~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~- 78 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLRI-P---PDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP- 78 (411)
T ss_pred EEEEEEEECCEEEEeeccCC-C---CCCeEEECCCCEEecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec-
Confidence 56899999999999974221 1 245789999999999999999999865555567788899999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc-cchHHHHHHHHcCCcE--EEEecccCCCCCCCCCCHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLNAGVLG--LKSFMCPSGINDFPMTNASHIKE 158 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~l~~ 158 (450)
++.+.....+.+....+..+....+++.+++++..... ...+++.++.+.|+.+ ++.+ +.+..+...+.+
T Consensus 79 ~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~g~~f~~~-------~~~~~~~~~l~~ 151 (411)
T TIGR00857 79 NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKEAGAVGRMFTDD-------GSEVQDILSMRR 151 (411)
T ss_pred CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHHCCcEEEEEEeC-------CcccCCHHHHHH
Confidence 77777777888888877777777888888887765543 2466777778889988 5542 224578899999
Q ss_pred HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
+++.++++|+++.+|+++...+...+...+ ......++...|..+|...+.+++.+++.. +.++|+.|+
T Consensus 152 ~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g----~~~~~~~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~Hv 220 (411)
T TIGR00857 152 ALEYAAIAGVPIALHAEDPDLIYGGVMHEG----PSAAQLGLPARPPEAEEVAVARLLELAKHA-------GCPVHICHI 220 (411)
T ss_pred HHHHHHHcCCEEEEecCCHHHHhhhhhcCC----cccHhhCCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeC
Confidence 999999999999999999887554433222 223345678899999999999999999977 999999999
Q ss_pred CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChh
Q 013050 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE 318 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~ 318 (450)
++. ++++.++.+++.|..+++++||++++++.+.+..++..++++||+|...++..+|+++.+|...+++||+.|....
T Consensus 221 s~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~ 299 (411)
T TIGR00857 221 STK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLE 299 (411)
T ss_pred CCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChH
Confidence 998 9999999999999999999999999999988877888999999999999999999999999999999999999876
Q ss_pred hhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeC
Q 013050 319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 398 (450)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~ 398 (450)
.+. .+|+..+.|+.+.+..++.+++...+.+++++++++++|.|||+++|+++.|+|++|+.|||+++|.+.++++.
T Consensus 300 ~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~G~l~~G~~ADlvi~d~~~~~~~~ 376 (411)
T TIGR00857 300 EKT---KEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTIN 376 (411)
T ss_pred Hcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEcCCCCEEEc
Confidence 653 36888999999999999999987777789999999999999999999954599999999999999999988887
Q ss_pred CCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 399 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
.. ++.+... ++||.|..+.++|..|+++|++||+|
T Consensus 377 ~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 377 AE-TFYSKAK-NTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred hH-HCccCCC-CCCcCCCEEEeEEEEEEECCEEEecC
Confidence 76 7777777 99999999999999999999999986
No 17
>PRK07575 dihydroorotase; Provisional
Probab=100.00 E-value=1.4e-52 Score=406.67 Aligned_cols=415 Identities=27% Similarity=0.404 Sum_probs=341.0
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|.|+||+|++|++..+.+ ...+++|++|++|+|||||+|+|+..++..+.+++.+..+.+++.|||++++++ +
T Consensus 21 ~~~I~I~dg~I~~ig~~~~~~---~~~~vid~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp-~ 96 (438)
T PRK07575 21 LGDVLVEDGKIVAIAPEISAT---AVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP-N 96 (438)
T ss_pred eeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcccEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC-C
Confidence 478999999999998753321 135789999999999999999999877777788999999999999999999998 7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHH
Q 013050 83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSV 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (450)
+.|...+.+.+....+.+.....+++.++++.... ...++..+ .++.+++.|+.... ...+..+...+.+.+
T Consensus 97 ~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~---~l~~l~~~--~~~~g~~~f~~~~~-~~~~~~~~~~~~~~~-- 168 (438)
T PRK07575 97 TKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPD---NLPELLTA--NPTCGIKIFMGSSH-GPLLVDEEAALERIF-- 168 (438)
T ss_pred CCCCCCcHHHHHHHHHHhccCcEEEEEEEcccccc---CHHHHHHh--hCCeEEEEEEeeCC-CCcccCcHHHHHHHH--
Confidence 78888888888888777777778888888665432 22233322 36778888764321 111122334444432
Q ss_pred HHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh
Q 013050 163 LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242 (450)
Q Consensus 163 a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~ 242 (450)
++.+.++..|+++...+..... ...+......+....|..+|.+.+.++++++++. +.++|+.|+++.
T Consensus 169 -~~~~~~v~~h~e~~~l~~~~~~---~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~-------g~~lhi~HiSt~- 236 (438)
T PRK07575 169 -AEGTRLIAVHAEDQARIRARRA---EFAGISDPADHSQIQDEEAALLATRLALKLSKKY-------QRRLHILHLSTA- 236 (438)
T ss_pred -HhCCCEEEEeCcChHHHHhhhH---hhccCcCcccccccCcHHHHHHHHHHHHHHHHHH-------CCCEEEEECCCH-
Confidence 3568999999998775332111 1122223334556789999999999999999987 999999999988
Q ss_pred HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcc
Q 013050 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 322 (450)
Q Consensus 243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~ 322 (450)
++++.+++++ +..++++++|+|++++.+.+..++..++++||+|...++..+|+++++|+.++++||+.|++...+.
T Consensus 237 ~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~- 313 (438)
T PRK07575 237 IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA- 313 (438)
T ss_pred HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHcc-
Confidence 9999998876 3679999999999999988777788899999999999999999999999999999999999987764
Q ss_pred cCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCC
Q 013050 323 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 402 (450)
Q Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~ 402 (450)
.+|+..+.|+.+.+..++.+++...+.++|++++++++|.|||++||+++.|+|++|++|||+|+|.+.++++..+ .
T Consensus 314 --~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk~lgl~~~G~L~~G~~ADlvi~D~~~~~~v~~~-~ 390 (438)
T PRK07575 314 --QPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVLVDLNTYRPVRRE-E 390 (438)
T ss_pred --CCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHcCCCCCCccCCCCcCCEEEEcCCCCEEEchH-H
Confidence 3688889999999999999998877778999999999999999999995579999999999999999998988776 7
Q ss_pred cccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050 403 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448 (450)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~ 448 (450)
+.++.. ++||.|..+.++|..||++|++||++|+++.+..|++++
T Consensus 391 ~~s~~~-~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~~~~~G~~~~ 435 (438)
T PRK07575 391 LLTKCG-WSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQALT 435 (438)
T ss_pred ccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEccCCCceEee
Confidence 888888 999999999999999999999999999999888899886
No 18
>PRK09236 dihydroorotase; Reviewed
Probab=100.00 E-value=2.1e-52 Score=406.92 Aligned_cols=423 Identities=27% Similarity=0.396 Sum_probs=346.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||+|++|++....+ ++.+++|++|++|+|||||+|+|+..++....+++.+..+.++.+|||++++++
T Consensus 18 ~~~~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p- 93 (444)
T PRK09236 18 FEGDVLIENGRIAKIASSISAK---SADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP- 93 (444)
T ss_pred eEeEEEEECCEEEEecCCCCCC---CCCeEEECCCCEECCCEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCC-
Confidence 3578999999999998653211 356899999999999999999999877666667888999999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
+..|.....+.+....+.......++++++.+.. ....+++.++.+.|+.++|.|+++.. ...+..+.+.+++++
T Consensus 94 ~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~e~~~l~~~g~~g~k~~~~~~~-~~~~~~~~~~~~~~~- 168 (444)
T PRK09236 94 NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGAT---NDNLDEIKRLDPKRVCGVKVFMGAST-GNMLVDNPETLERIF- 168 (444)
T ss_pred CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccC---cccHHHHHHHHHccCcEEEEEeccCC-CCcccCcHHHHHHHH-
Confidence 7777777788887777766666677888776443 22366777888889999999875421 111233445555554
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCc-CCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDT-LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~ 240 (450)
+..++++.+|+++...+.......... ........+....|..++...+.++++++++. +.++|++|+++
T Consensus 169 --~~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~-------~~~~hi~h~st 239 (444)
T PRK09236 169 --RDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKH-------GTRLHVLHIST 239 (444)
T ss_pred --HhcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCC
Confidence 445899999998877654322110000 11112223344678888999999999999977 99999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
. ++++.+++.+..+..+++++|+|+++++.+.+...+..++++||++....+..+++++.+|+.++++||+.|.....+
T Consensus 240 ~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k 318 (444)
T PRK09236 240 A-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEK 318 (444)
T ss_pred H-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCCCCcEEECCCCCCCHHHh
Confidence 8 999999998888999999999999999998887778889999999999999999999999999999999999876665
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 400 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 400 (450)
. .+|+..+.|+.+.+..++.+++...+.++|++++++++|.|||++||+++.|+|++|+.|||+++|.+.+++++..
T Consensus 319 ~---~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~ 395 (444)
T PRK09236 319 Q---GPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKE 395 (444)
T ss_pred c---CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHHHhcCCCCCCccccCCcCCEEEEcCCCCEEEchH
Confidence 3 3688889999999999998888777788999999999999999999995579999999999999999998998877
Q ss_pred CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050 401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448 (450)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~ 448 (450)
++.++.. ++||.|..+.++|.+|||+|++||++|+++....||+++
T Consensus 396 -~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~G~~~~ 441 (444)
T PRK09236 396 -NILYKCG-WSPFEGRTFRSRVATTFVNGQLVYHNGQLVESCRGQRLE 441 (444)
T ss_pred -HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEEccCcCceEee
Confidence 7777777 999999999999999999999999999999777899987
No 19
>PRK01211 dihydroorotase; Provisional
Probab=100.00 E-value=1.3e-52 Score=398.84 Aligned_cols=392 Identities=26% Similarity=0.356 Sum_probs=327.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||||++|++.. ...+++|++| +|+|||||+|+|+..++..+.+++.++++.+++.|||++++||
T Consensus 14 ~~~di~I~dGkI~~i~~~~------~~~~~ida~g-~vlPG~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmP- 85 (409)
T PRK01211 14 DYLEIEVEDGKIKSIKKDA------GNIGKKELKG-AILPAATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP- 85 (409)
T ss_pred EEEEEEEECCEEEEecCCC------CCceEEEecc-EEcCCeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECC-
Confidence 3579999999999998643 1457899999 9999999999999999998999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
++.|.....+.+....+.+.....+++.+++.....+. ++.+.|+.+++.|+.+.... .......+.++
T Consensus 86 nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~-------~~~~~g~~~~k~f~~~~~~~----~~~~~~~~~l~ 154 (409)
T PRK01211 86 NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA-------LILDERSIGLKVYMGGTTNT----NGTDIEGGEIK 154 (409)
T ss_pred CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh-------hHHhccCcEEEEEcCCCcCC----CccccCHHHHH
Confidence 78888888999988888888887899998876533221 23345999999986542100 00011113446
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.+++.|.++.+|+++...+......+ .....+....|..+|...+.+++.+++. ++|+.|+++.
T Consensus 155 ~~~~~g~~v~~H~E~~~l~~~~~~~~------~~~~~~~~~rP~~aE~~ai~~~~~la~~----------~~hi~HvSt~ 218 (409)
T PRK01211 155 KINEANIPVFFHAELSECLRKHQFES------KNLRDHDLARPIECEIKAVKYVKNLDLK----------TKIIAHVSSI 218 (409)
T ss_pred HHHccCCEEEEeccChHHhhhhhhCc------chHhhCCCCCCHHHHHHHHHHHHHHhCC----------CcEEEEecCh
Confidence 66789999999999988755332211 1123356778999999999999999873 4999999997
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
+++ ..+++++||||++++.+. .++..++++||+|...+++.+|+++.+|...+++|||+|+....+
T Consensus 219 -~~~----------~~vt~Ev~phhL~l~~~~--~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK- 284 (409)
T PRK01211 219 -DVI----------GRFLREVTPHHLLLNDDM--PLGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEEDK- 284 (409)
T ss_pred -hhc----------CceEEEecHHHHcccccc--ccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChhHh-
Confidence 555 269999999999999876 378889999999999999999999999999999999999987665
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 401 (450)
.+|+.++.|+.+++..++.++....+.++|+++++++.|.|||++||++ .|+|++|+.|||+|+|.+..+++..+
T Consensus 285 ---~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~-kG~l~~G~~ADlvi~D~~~~~~v~~~- 359 (409)
T PRK01211 285 ---QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIK-KGKIEEGYDADFMAFDFTNIKKINDK- 359 (409)
T ss_pred ---CCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC-CCcccCCCcCCEEEEcCCCeEEEChH-
Confidence 3689999999999999999997666778999999999999999999994 79999999999999999999999877
Q ss_pred CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050 402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 449 (450)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~ 449 (450)
.+.+... ++||.|..+. +|.+||++|++||++|+++++..|+++++
T Consensus 360 ~~~s~~~-~spf~G~~~~-~v~~tiv~G~~v~~~~~~~~~~~G~~~~~ 405 (409)
T PRK01211 360 RLHSKCP-VSPFNGFDAI-FPSHVIMRGEVVIDNYELISERTGKFVPK 405 (409)
T ss_pred HhhccCC-CCCCCCCEec-cEEEEEECCEEEEECCEEccccCceEecc
Confidence 7788888 9999999987 99999999999999999997779999976
No 20
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=1e-51 Score=400.86 Aligned_cols=415 Identities=29% Similarity=0.453 Sum_probs=340.8
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|+|+||+|++|++.... ++.+++|++|++|+|||||+|+|+..++....+++.+..+.+++.|||++++++ +
T Consensus 22 ~~~i~i~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p-~ 96 (444)
T PRK09060 22 RADIGIRDGRIAAIGDLSGA----SAGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP-N 96 (444)
T ss_pred eeEEEEECCEEEEecCCCCC----CCceEEECCCCEEccCEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECC-C
Confidence 47899999999999864321 245799999999999999999999877776778899999999999999999998 7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
..+.....+.+....+.......+++.+++.....+. +++.++.. .|+.+++.|+.+.. ...+..+...+.++++
T Consensus 97 ~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~-~~~~~~d~~~l~~~~~ 172 (444)
T PRK09060 97 TNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSST-GDLLVEDDEGLRRILR 172 (444)
T ss_pred CCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCC-CCcccCCHHHHHHHHH
Confidence 7777788888888777777667888888865544333 33444322 48899998875421 1112345555666544
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
+.+..+.+|+++...+...-. ..+.+ ....+....|..+|...+.+++.+++.. +.++|++|+++.
T Consensus 173 ---~~~~~v~~H~E~~~l~~~~~~--~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~-------~~~lhi~h~st~ 238 (444)
T PRK09060 173 ---NGRRRAAFHSEDEYRLRERKG--LRVEG--DPSSHPVWRDEEAALLATRRLVRLARET-------GRRIHVLHVSTA 238 (444)
T ss_pred ---hCCCeEEEECCCHHHHHHHHH--HHhcC--CcccccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH
Confidence 358899999998876543211 11111 3334556779999999999999999977 999999999998
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccc-cCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
++++.++.++. .+++++|||++.++.+. +..++..++++||++...+++.+|++++.|+.++++||+.|+....+
T Consensus 239 -~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k 314 (444)
T PRK09060 239 -EEIDFLADHKD---VATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK 314 (444)
T ss_pred -HHHHHHHHhCC---CeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHh
Confidence 99999987755 38999999999999877 66678889999999999999999999999999999999999987766
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 400 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 400 (450)
. ..|+.++.|+.+++..++.++..+.+.++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+++...
T Consensus 315 ~---~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~gl~~~G~l~~G~~ADlvl~d~~~~~~v~~~ 391 (444)
T PRK09060 315 A---KPYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNE 391 (444)
T ss_pred c---CCcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEEChH
Confidence 3 3688889999999999999887655666999999999999999999996589999999999999999998988877
Q ss_pred CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050 401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 449 (450)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~ 449 (450)
++.++.. ++||.+..+.++|.+||++|++||++|+++....|+++++
T Consensus 392 -~~~s~~~-~sp~~g~~l~g~~~~tiv~G~~v~~~g~~~~~~~G~~~~~ 438 (444)
T PRK09060 392 -WIASRCG-WTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPVRF 438 (444)
T ss_pred -HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEEccCCCccCccc
Confidence 7777777 9999999999999999999999999999998888999875
No 21
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=1.1e-51 Score=401.88 Aligned_cols=416 Identities=33% Similarity=0.467 Sum_probs=344.3
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||+|++|++....+ ...++||++|++|+|||||+|+|+..++....+++.+..+.++.+|||++++++
T Consensus 18 ~~~~v~I~dg~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~- 93 (443)
T PRK02382 18 QPRDVRIDGGKITAVGKDLDGS---SSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQP- 93 (443)
T ss_pred eEEEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcCCEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECC-
Confidence 4579999999999998643211 246899999999999999999999887766678889999999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEE-EEecccCCCCCCCCCCHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGL 160 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 160 (450)
++.+.....+.+....+.......+++.+++... ...+.+.++.+.|+.++ +.+..+.. +....+.+.+.+++
T Consensus 94 ~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~~~gv~~~gkv~~~~~~--~~~~~~~~~l~~~~ 167 (443)
T PRK02382 94 NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLWERGVFALGEIFMADST--GGMGIDEELFEEAL 167 (443)
T ss_pred CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHHhcCccceeEEEEEecC--CCcccCHHHHHHHH
Confidence 7777777777777777766666667777665432 12456777888898887 67654321 11235668899999
Q ss_pred HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050 161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240 (450)
Q Consensus 161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~ 240 (450)
+.+++.|+++.+|+++.......... ..+......+....|..+|...+.+++.+++.. +.++|+.|+++
T Consensus 168 ~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~-------g~~~hi~h~ss 237 (443)
T PRK02382 168 AEAARLGVLATVHAEDEDLFDELAKL---LKGDADADAWSAYRPAAAEAAAVERALEVASET-------GARIHIAHIST 237 (443)
T ss_pred HHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCC
Confidence 99999999999999988764432211 111222334456789999999999999999977 99999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
. ++++.+++++ +++++|||+++++.+.+...+..++++||++...+++.+|+++.+|...+++|||.|.....+
T Consensus 238 ~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K 311 (443)
T PRK02382 238 P-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEK 311 (443)
T ss_pred H-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHh
Confidence 8 9999998653 899999999999998876677788999999999999999999999999999999999988776
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 400 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 400 (450)
. .+|+.++.|+.+++..++.++....+.+++++++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+.+..+
T Consensus 312 ~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g~~~~G~l~~G~~AD~vi~d~~~~~~~~~~ 388 (443)
T PRK02382 312 D---ADIWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDAAREIRGD 388 (443)
T ss_pred c---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH
Confidence 4 3699999999999999999987777788999999999999999999996689999999999999999988888776
Q ss_pred CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050 401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 449 (450)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~ 449 (450)
.+.++.. ++||.+.... .|.+||++|++||++|+++.+ ..||++++
T Consensus 389 -~~~s~~~-~sp~~g~~~~-~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~ 435 (443)
T PRK02382 389 -DLHSKAG-WTPFEGMEGV-FPELTMVRGTVVWDGDDINAKRGRGEFLRG 435 (443)
T ss_pred -HhcccCC-CCCcCCCEec-eEEEEEECCEEEEECCEEecCCCCceEeCC
Confidence 6777777 9999998765 889999999999999999966 47999986
No 22
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=3.1e-50 Score=391.31 Aligned_cols=404 Identities=32% Similarity=0.468 Sum_probs=335.4
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|.|+||+|.+|++.... ++.++||++|++|+|||||+|+|+..++....+++....+.++++|||++++++
T Consensus 18 ~~~~I~I~dg~I~~i~~~~~~----~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~- 92 (423)
T PRK09357 18 EVADVLIDDGKIAAIGENIEA----EGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP- 92 (423)
T ss_pred ceeeEEEECCEEEEeeCCCCC----CCCeEEECCCCEEeCCEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecC-
Confidence 457999999999999864211 356899999999999999999999776666678899999999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (450)
++.|.......+....+.+.....+++..++.+... .....+.+..+.+.|+..++.+ +....+.+.+++++
T Consensus 93 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~-------~~~~~~~~~l~~~~ 165 (423)
T PRK09357 93 NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSDD-------GIPVQDARLMRRAL 165 (423)
T ss_pred CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHhCCcEEEECC-------CcccCCHHHHHHHH
Confidence 777777777777777777666655667666544322 2234566666667787666542 22345788999999
Q ss_pred HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050 161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240 (450)
Q Consensus 161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~ 240 (450)
+.|+++|.++.+|+++.......+... +......+....|...|...+.+++.+++.. +.++|+.|+++
T Consensus 166 ~~a~~~g~~v~iH~ee~~~~~~~~~~~----g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~-------g~~~hi~H~s~ 234 (423)
T PRK09357 166 EYAKALDLLIAQHCEDPSLTEGGVMNE----GEVSARLGLPGIPAVAEEVMIARDVLLAEAT-------GARVHICHVST 234 (423)
T ss_pred HHHHhcCCEEEEeCCCHHHhhcccccC----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCC
Confidence 999999999999998876644333222 2222334456778999999999999999977 99999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
. +..+.++.+++.|+.+++++||++++++.+.+..++..++++||+|....+..+|+++++|+.++++||+.|.+...+
T Consensus 235 ~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k 313 (423)
T PRK09357 235 A-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEK 313 (423)
T ss_pred H-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHc
Confidence 8 999999999999999999999999999998877677889999999999999999999999999999999999887666
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 399 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~ 399 (450)
.. +|+..+.|+.+.+..++.++.... +.+++++++++++|.|||+++|++. |+|++|++|||+|+|.+.++++..
T Consensus 314 ~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~-G~i~~G~~AD~~i~d~~~~~~v~~ 389 (423)
T PRK09357 314 EC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA-GPLAEGEPADLVIFDPEAEWTVDG 389 (423)
T ss_pred cC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCEEEch
Confidence 42 588889999999999999887543 5579999999999999999999954 999999999999999999888876
Q ss_pred CCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
. .+.+... ++||.|..+.++|..|||+|++||++
T Consensus 390 ~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 390 E-DFASKGK-NTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred h-hcccCCC-CCCCcCCEEeeEEEEEEECCEEEecC
Confidence 6 6777777 99999999999999999999999975
No 23
>PRK04250 dihydroorotase; Provisional
Probab=100.00 E-value=5.6e-50 Score=381.44 Aligned_cols=385 Identities=30% Similarity=0.438 Sum_probs=315.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|+||+|.+|++. .. +..++||+.|++|+|||||+|+|+..++....+++.+..+.++++|||++++++
T Consensus 13 ~~~~i~i~~G~I~~i~~~-~~----~~~~~iD~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p- 86 (398)
T PRK04250 13 VEGGIGIENGRISKISLR-DL----KGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMP- 86 (398)
T ss_pred EEEEEEEECCEEEEeeCC-CC----CCCeEEECCCCEEccCEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECC-
Confidence 358899999999999741 11 245889999999999999999999766666677899999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
++.|.....+.+....+.++..+.+++.+++ .... ..+++.++... .++.|+.+... ....+.+...
T Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~~l~~l~~~---~~k~f~~~~~~----~~~~~~~~~~-- 153 (398)
T PRK04250 87 NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG---NCEKAEEIKAD---FYKIFMGASTG----GIFSENFEVD-- 153 (398)
T ss_pred CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC---CHHHHHHHHhh---heEEEEecCCC----chhHHHHHHH--
Confidence 8888888899998888888888889999887 4332 23334444322 35666533210 1122222221
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
..+.+..+.+|+++...+. .+...|..+|...+.+++.+++.+ +.++|+.|+++.
T Consensus 154 -~~~~~~~v~~H~E~~~~~~-----------------~~~~~p~~aE~~av~r~~~la~~~-------~~~lhi~HvSt~ 208 (398)
T PRK04250 154 -YACAPGIVSVHAEDPELIR-----------------EFPERPPEAEVVAIERALEAGKKL-------KKPLHICHISTK 208 (398)
T ss_pred -HHhcCCeEEEEecChhhhh-----------------cccCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH
Confidence 2233557999998876522 134679999999999999999987 999999999998
Q ss_pred hHHHHHHHHHHhCCCc-EEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050 242 SSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~ 320 (450)
++++.+++ .|.. +++++||||++++.+.+ .++..++++||+|...+++.+|+++.. ..+++|||.|+....+
T Consensus 209 -~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~sDHaP~~~~~k 281 (398)
T PRK04250 209 -DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERNPLLKVYPPLRSEEDRKALWENFSK--IPIIASDHAPHTLEDK 281 (398)
T ss_pred -HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCCCceEEcCCCCCHHHHHHHHHhhcc--CCEEEcCCcccCHHHh
Confidence 88888864 4776 99999999999999887 578899999999999999999999964 8889999999987766
Q ss_pred cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 400 (450)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 400 (450)
.. .+.|+.+++..++.++....+.++|++++++++|.|||++||+++.| |++|+.|||+|+|.+..+++...
T Consensus 282 ~~-------~~~G~~g~e~~lpl~~~~v~~~~lsl~~~v~~~t~npAk~lgl~~~G-L~~G~~ADlvi~D~~~~~~v~~~ 353 (398)
T PRK04250 282 EA-------GAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAE 353 (398)
T ss_pred hc-------CCCCcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCcC-ccCCCcCCEEEEcCCCcEEEChh
Confidence 31 24699999999999988767778999999999999999999996579 99999999999999998988877
Q ss_pred CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccc
Q 013050 401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447 (450)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~ 447 (450)
.+.+... ++||.|..+.++|.+||++|++||++|+++++..|+++
T Consensus 354 -~~~s~~~-~sp~~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~~ 398 (398)
T PRK04250 354 -ELYTKAG-WTPYEGFKLKGKVIMTILRGEVVMEDDEIIGKPRGVRI 398 (398)
T ss_pred -hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEcCCCCCeEC
Confidence 7777777 89999999999999999999999999999988888874
No 24
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=366.26 Aligned_cols=430 Identities=27% Similarity=0.378 Sum_probs=371.3
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
...||+++||.|.+|+++..++ .+.+++|+.|++|+||.||.|+|+..+ +...+|+|..+.+.+++.|+|+++|+
T Consensus 30 ~~aDV~vedGiI~~vg~~l~ip---gg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~ 106 (522)
T KOG2584|consen 30 FKADVYVEDGIIKEVGENLIIP---GGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDF 106 (522)
T ss_pred eeeeEEeccCEEEEecccEEcC---CCceEEecCCcEEecCccCccceeccccCCccchhhhhcccHHHhcCCceEEEEE
Confidence 3579999999999999987665 488999999999999999999999988 88899999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKE 158 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (450)
. -..+.....+.++.+..++.++..++|++|.++..|.....+++.-+.+ .|+.+|+.|+.|. +.++.++++|.+
T Consensus 107 v-lp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk---~~~~v~d~~lye 182 (522)
T KOG2584|consen 107 V-LPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYK---DLYMVRDSELYE 182 (522)
T ss_pred e-cCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeec---cccccCHHHHHH
Confidence 7 4444567788889999999999999999999999998877777776654 8999999999885 446889999999
Q ss_pred HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
.++..++.|...++|+++.+.+.+.-+..- ..+...-..+..++|+..|.+++.+++.++.+. ++|+.++|+
T Consensus 183 ~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~-------ncPlyvvhV 254 (522)
T KOG2584|consen 183 ALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGPEGHELSRPEELEAEATNRAITIARQA-------NCPLYVVHV 254 (522)
T ss_pred HHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCcccccccCchhhhHHHHHHHHHHHHhc-------CCCcceEEE
Confidence 999999999999999999888765433221 111222223556899999999999999999987 888999999
Q ss_pred CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCChh-hHHHHHHHHhcCCeeEEcCCCC
Q 013050 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAA-NKEKLWEALMDGHIDMLSSDHS 313 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~~~~~g~~~~~gtD~~ 313 (450)
.+. .+.+.+..+++.|-.+..++....+..+...+.. ....+.++||++... ..+.|+.+|+.|..-..+||++
T Consensus 255 msk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhc 333 (522)
T KOG2584|consen 255 MSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHC 333 (522)
T ss_pred eeh-hHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCC
Confidence 887 8899999999888777777766666666654322 356788999997554 7888999999999999999999
Q ss_pred CCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeC
Q 013050 314 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEP 391 (450)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~ 391 (450)
+++...+.+..++|...|+|..+++.+++..|..... ..|++.+.++..+.|.|+++++ +++|+|++|.+||+||||+
T Consensus 334 tf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp 413 (522)
T KOG2584|consen 334 TFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDP 413 (522)
T ss_pred CCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheeccCcCceecccCCCcEEEECC
Confidence 9999999999999999999999999999999988665 4589999999999999999999 9999999999999999999
Q ss_pred CCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCccccc
Q 013050 392 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA 449 (450)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~~ 449 (450)
+...++... .-.+... .+.|+|....+.+.-|+..|++||.+|++. ....||||..
T Consensus 414 ~at~tIS~~-th~~~~d-~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fip~ 470 (522)
T KOG2584|consen 414 NATKTISAK-THHSAND-FNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFIPR 470 (522)
T ss_pred CcceEeccc-ccccccc-ceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCceeeC
Confidence 999999887 6666666 899999999999999999999999999998 4588999864
No 25
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=1.7e-47 Score=360.55 Aligned_cols=361 Identities=34% Similarity=0.460 Sum_probs=310.8
Q ss_pred CCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050 36 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 115 (450)
Q Consensus 36 g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (450)
|++|+||+||+|+|+..++..+++++.++.+.+++.|||++++|| ++.|.....+.+....+.++..+.+++.+++.+.
T Consensus 1 G~~vlPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~ 79 (361)
T cd01318 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVT 79 (361)
T ss_pred CCEEecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeec
Confidence 689999999999999998888899999999999999999999999 8888889999998888888877789999887654
Q ss_pred CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
.. +.+.++.+.|+.+++.|+.+... . ...+...+.++++.+. .++.+|+++...+.......+.
T Consensus 80 ~~-----~~l~~~~~~~~~g~k~f~~~~~~-~-~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~------ 143 (361)
T cd01318 80 GS-----EDLEELDKAPPAGYKIFMGDSTG-D-LLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKG------ 143 (361)
T ss_pred Ch-----hhHHHHHHhhCcEEEEEEecCCC-C-cCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhh------
Confidence 33 35666677788899998754221 1 1257788888887764 7899999998875544332221
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 275 (450)
...+..+.|..+|...+.+++.+++.. +.++|+.|+++. ++++.+++++ ..+++++||++++++.+.+.
T Consensus 144 ~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~ 212 (361)
T cd01318 144 ESAHPRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYD 212 (361)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHh
Confidence 114457889999999999999999977 999999999998 8999998876 57999999999999988876
Q ss_pred CCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050 276 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355 (450)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~ 355 (450)
.++..++++||+|...+++.+|+++++|..++++||+.|.....+. ..|+.++.|+.+.+..++.++....+.++++
T Consensus 213 ~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l 289 (361)
T cd01318 213 RLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLMLTLVNKGILSL 289 (361)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHHHHHHcCCCCH
Confidence 6788999999999999999999999999999999999999877663 3688999999999999998887777778999
Q ss_pred HHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 429 (450)
Q Consensus 356 ~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 429 (450)
+++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+++..+ .+.+... ++||.|..+.++|..||++|
T Consensus 290 ~~a~~~~t~nPA~~lgl~~~G~i~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 290 SRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAE-EFHSKAG-WTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred HHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEeCc
Confidence 999999999999999995579999999999999999999999877 7777777 99999999999999999998
No 26
>PRK00369 pyrC dihydroorotase; Provisional
Probab=100.00 E-value=1.1e-46 Score=356.30 Aligned_cols=374 Identities=28% Similarity=0.338 Sum_probs=303.2
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEec-CCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDY-GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~-~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
++.|.+++++|..|++.. + .+.+++|+ +|++|+|||||+|+|+..++..+++++.++++.+++.|||++++||
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~---~~~~~id~~~G~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP- 86 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--S---RCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP- 86 (392)
T ss_pred CceEEEeeeeeeeEeecc--C---CCCceeecCCCCEEeCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-
Confidence 456788899999888752 1 36789999 6999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (450)
++.|.....+.+....+.+...+.+++.+++..... .+ ++.+.|+.+++.|. ++ ... .+.++
T Consensus 87 nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~---el~~~~~~g~k~f~-----~~--~~~----~~~~~ 148 (392)
T PRK00369 87 NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PE---KVDKLPIAGYKIFP-----ED--LER----EETFR 148 (392)
T ss_pred CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HH---HHHHhhCceEEEEC-----CC--Cch----HHHHH
Confidence 888888889999988888888888999988755321 22 33445788888874 11 122 23444
Q ss_pred HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
.+.+++.++.+|+++...+... ....+|..+|...+.++..+ .++|+.|+++.
T Consensus 149 ~~~~~~~~v~~HaE~~~l~~~~---------------~~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~ 201 (392)
T PRK00369 149 VLLKSRKLKILHPEVPLALKSN---------------RKLRRNCWYEIAALYYVKDY------------QNVHITHASNP 201 (392)
T ss_pred HHHHhCCEEEEeCCCHHHhhcc---------------hhcccCHHHHHHHHHHHHHh------------CCEEEEECCCH
Confidence 4555669999999987753311 11245666676665555544 35999999997
Q ss_pred hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
+++ +.+++.| +++++||||++++.+ ++..++++||+|...+++.+|+++.+ ..+++|||.|+....+
T Consensus 202 -~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K- 268 (392)
T PRK00369 202 -RTV---RLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEK- 268 (392)
T ss_pred -HHH---HHHHHCC--CeEEechhHheeccC----CCCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHc-
Confidence 654 4555566 788999999999875 36679999999999999999999998 7899999999987776
Q ss_pred ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050 322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 401 (450)
..+|+.++.|+.+++..++.++....+.+++++++++++|.|||+++|++ .|.|++|+.|||+++|.+ .+++ +
T Consensus 269 --~~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v~~~s~nPA~ilgl~-~g~i~~G~~ADlvi~d~~-~~~~--~- 341 (392)
T PRK00369 269 --LQPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELISTNPARILGIP-YGEIKEGYRANFTVIQFE-DWRY--S- 341 (392)
T ss_pred --cCCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC-CCccCCCCccCEEEEeCC-ceeE--c-
Confidence 34699999999999999999988777778999999999999999999995 488999999999999987 5664 3
Q ss_pred CcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCcccc
Q 013050 402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPIL 448 (450)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~ 448 (450)
...+... ++||.|..+.++|.+||++|++||++|+++ .++.|++=+
T Consensus 342 ~~~sk~~-~sp~~G~~l~G~v~~ti~~G~~v~~~~~~~~~~g~G~~~~ 388 (392)
T PRK00369 342 TKYSKVI-ETPLDGFELKASVYATIVQGKLAYLEGEVFPVKGINPFGE 388 (392)
T ss_pred cccccCC-CCCCCCCEeeeEEEEEEECCEEEEECCeEecCCCCCCCCc
Confidence 5667777 999999999999999999999999999999 447787644
No 27
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=2.2e-45 Score=350.31 Aligned_cols=371 Identities=35% Similarity=0.502 Sum_probs=319.4
Q ss_pred CcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE
Q 013050 29 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 108 (450)
Q Consensus 29 ~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (450)
.++||++|++|+||+||+|+|+..+.....+++.+..+.++.+|||++++++ +..|.....+.+....+.+.....+++
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRV 80 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeE
Confidence 4789999999999999999999988777788999999999999999999999 777888888888888777777666777
Q ss_pred EEeccccCCCcc-chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhc
Q 013050 109 GFWGGLVPENAY-NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 187 (450)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 187 (450)
.+++.+...... .++++..+.+.|+.+++.+ +.+..+...+.++++.+++.|.++.+|+++...+...++
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~-- 151 (374)
T cd01317 81 LPIGALTKGLKGEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVM-- 151 (374)
T ss_pred EEEEEEeeCCCcccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCc--
Confidence 777766554433 4778888888999999853 223567888999999999999999999988887554333
Q ss_pred cCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchh
Q 013050 188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 267 (450)
Q Consensus 188 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ 267 (450)
+.+......++...|..++...+.++++++++. +.++|+.|+++. ++++.++++++.|+.+++++++|++
T Consensus 152 --~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L 221 (374)
T cd01317 152 --NEGKVASRLGLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHL 221 (374)
T ss_pred --cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHH
Confidence 223333444567788888888999999999987 899999999998 9999999999999999999999999
Q ss_pred cccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH
Q 013050 268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347 (450)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (450)
.++.+.+...+..++++||++....+..++++++.|+.++++||+.|.+...++. +|+..+.|+.+.+..++.+++.
T Consensus 222 ~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~ 298 (374)
T cd01317 222 LLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTL 298 (374)
T ss_pred hcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHH
Confidence 9999887777888999999999999999999999999999999999998776643 5888899999999999998887
Q ss_pred HHh-cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEE
Q 013050 348 GRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425 (450)
Q Consensus 348 ~~~-~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 425 (450)
+.+ ..+|++++++++|.|||+++|++ .|+|++|+.|||+++|.+.++++..+ .+.+... ++||+|..+.++|.+|
T Consensus 299 ~~~~~~~~~~~~~~~~t~npA~~lgl~-~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~G~~l~g~~~~t 374 (374)
T cd01317 299 LVKGGLLTLPDLIRALSTNPAKILGLP-PGRLEVGAPADLVLFDPDAEWIVDEE-TFRSKSK-NTPFDGQKLKGRVLAT 374 (374)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhCCC-CCcccCCCcCCEEEECCCCCEEEChh-hccccCC-CCCCCCCEEeEEEEEC
Confidence 654 45899999999999999999995 49999999999999999999999888 7888888 9999999999998765
No 28
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=100.00 E-value=1.9e-45 Score=344.76 Aligned_cols=336 Identities=36% Similarity=0.601 Sum_probs=296.3
Q ss_pred CEEeccceeeccccCCCCCC-cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050 37 AVIMPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 115 (450)
Q Consensus 37 ~~v~PG~iD~H~H~~~~~~~-~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (450)
++|+||+||+|+|+..++.. +++++.++.+.+++.|||++++|| ++.|.....+.+....+.+...+.+++.+++...
T Consensus 1 ~~vlPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~ 79 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG 79 (337)
T ss_pred CEecCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc
Confidence 57999999999999988876 789999999999999999999999 8888888888888888888777788999887665
Q ss_pred CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
.. ...+++.++.+.|+.++|.|+.+... ..+..+.+.+.+.++.+++.|+++.+|++
T Consensus 80 ~~--~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------------------- 136 (337)
T cd01302 80 PG--DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAE-------------------- 136 (337)
T ss_pred Cc--cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHH--------------------
Confidence 53 25667888888999999998765321 11256788999999999999999999992
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 275 (450)
+++.++++. +.++|+.|+++. ++++.++++++.|..+++++||++++++.+.+.
T Consensus 137 ------------------r~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~ 190 (337)
T cd01302 137 ------------------RAAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLR 190 (337)
T ss_pred ------------------HHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhh
Confidence 567777765 899999999998 999999999999999999999999999988877
Q ss_pred CCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050 276 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355 (450)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~ 355 (450)
.++..++++||+|...+++.+|+++++|...+++||+.|.....+... ++|+.++.|+.+.+..++.++....+.++++
T Consensus 191 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~ 269 (337)
T cd01302 191 LNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVKRGLSL 269 (337)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHhcCCCH
Confidence 778889999999999999999999999999999999999987765432 4689999999999999999998887889999
Q ss_pred HHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEE
Q 013050 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425 (450)
Q Consensus 356 ~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 425 (450)
+++++++|.|||+++|++..|+|++|+.|||+|+|.+..+++..+ ++.+... ++||+|..+.++|..|
T Consensus 270 ~~~~~~~s~~pA~~~gl~~~g~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t 337 (337)
T cd01302 270 ETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAE-EIESKAD-WTPFEGMEVTGKPVST 337 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccccCCcCCEEEEeCCCcEEEcHH-HhcccCC-CCCcCCcEEEEEEEEC
Confidence 999999999999999994479999999999999999999999888 8888888 9999999999998865
No 29
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=9e-41 Score=310.94 Aligned_cols=339 Identities=27% Similarity=0.448 Sum_probs=277.7
Q ss_pred CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC
Q 013050 37 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 116 (450)
Q Consensus 37 ~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (450)
.+|+|||||.|+|+..++..+++++.++++.+++.|||++++|| ++.|.....+.+....+.++..+.+++.+++....
T Consensus 2 ~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~ 80 (344)
T cd01316 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATS 80 (344)
T ss_pred eEEeCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecC
Confidence 47999999999999999888899999999999999999999999 88888888999988888888888899999876655
Q ss_pred CCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccc
Q 013050 117 ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 196 (450)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 196 (450)
.+.. .+.++.. .+.+++.|..+.. .... .+.....+....+...+.++..|+++.
T Consensus 81 ~~~~---~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 81 TNAA---TVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCHH---HHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 4432 3444433 3567887764321 0101 122222233334445578888888443
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC
Q 013050 197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 276 (450)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 276 (450)
.+.+++.+++.+ +.++|+.|+++. ++++.++++++.|..+++++||||+.++.+.+..
T Consensus 136 --------------~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~ 193 (344)
T cd01316 136 --------------TLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR 193 (344)
T ss_pred --------------HHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc
Confidence 356788999876 999999999999 9999999999999999999999999999887644
Q ss_pred CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHH
Q 013050 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE 356 (450)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~ 356 (450)
..++++||+|...+++.||+++. ...+++|||+|+....+.. . ..+.|+.+++..++.+++.+.+.+++++
T Consensus 194 --~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~~v~~~~i~l~ 264 (344)
T cd01316 194 --GQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLTAVHEGRLTIE 264 (344)
T ss_pred --CCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHHHHHcCCCCHH
Confidence 46899999999999999999996 4779999999998766532 1 6678999999999999986666689999
Q ss_pred HHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050 357 QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 436 (450)
Q Consensus 357 ~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 436 (450)
++++..+.|||++||++. + .+||+|+|.+..|++..+ .+.+... ++||+|..+.++|.+||++|++||++|
T Consensus 265 ~l~~~~s~nPAk~~gl~~------~-~~~lvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~ti~rG~~v~~~g 335 (344)
T cd01316 265 DIVDRLHTNPKRIFNLPP------Q-SDTYVEVDLDEEWTIPKN-PLQSKKG-WTPFEGKKVKGKVQRVVLRGETAFIDG 335 (344)
T ss_pred HHHHHHHHhHHHHhCCCC------C-CCCEEEEeCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECC
Confidence 999999999999999931 2 347999999999999888 7888888 999999999999999999999999999
Q ss_pred cccCC
Q 013050 437 NHAPA 441 (450)
Q Consensus 437 ~~~~~ 441 (450)
+++..
T Consensus 336 ~~~~~ 340 (344)
T cd01316 336 EIVAP 340 (344)
T ss_pred EEccC
Confidence 98854
No 30
>PRK09061 D-glutamate deacylase; Validated
Probab=100.00 E-value=2.5e-40 Score=324.74 Aligned_cols=374 Identities=22% Similarity=0.235 Sum_probs=269.6
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|.|+||+|++|++... .+.++||++|++|+|||||+|+|...+. ..+..+..|||+++++..+
T Consensus 38 ~~~v~I~~G~I~~ig~~~~-----~~~~viD~~g~~v~PG~ID~H~H~~~~~---------~~~~~~~~GvTtvv~~~~~ 103 (509)
T PRK09061 38 VRDVGIKGGKIAAVGTAAI-----EGDRTIDATGLVVAPGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAG 103 (509)
T ss_pred cceEEEECCEEEEecCCCC-----CCCeEEeCCCCEEecCeEeeeeCCCCCc---------cchhhccCCceeEEeeccC
Confidence 3689999999999987532 2568999999999999999999986543 2455688899999998312
Q ss_pred CCCCCCcHHHHHHHHHHHh-cCCceEEEEecccc-------C-------------------CC-----ccchHHHHHHH-
Q 013050 83 SDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLV-------P-------------------EN-----AYNASALEALL- 129 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~-------------------~~-----~~~~~~~~~~~- 129 (450)
..|. ....+... ....+++..+.+.. . .. .++++++.++.
T Consensus 104 ~~p~-------~~~~~~~~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~ 176 (509)
T PRK09061 104 VLPV-------ARWYAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAEILELLE 176 (509)
T ss_pred CCCH-------HHHHHHHHhcCCcceeehhcCcHHHHHHHhCCcccccccccccccccccccccCCCCHHHHHHHHHHHH
Confidence 2221 22222222 23346776655442 1 01 23344445444
Q ss_pred ---HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChH
Q 013050 130 ---NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206 (450)
Q Consensus 130 ---~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 206 (450)
+.|+.+++.+..+. |..+.+++.++++.|+++|.++.+|+++... ....
T Consensus 177 ~al~~Ga~gis~~~~y~-----p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~-----------------------~~~~ 228 (509)
T PRK09061 177 QGLDEGALGIGIGAGYA-----PGTGHKEYLELARLAARAGVPTYTHVRYLSN-----------------------VDPR 228 (509)
T ss_pred HHHHCCCCEEecCCccC-----CCCCHHHHHHHHHHHHHcCCEEEEEecCccc-----------------------CCch
Confidence 58999998754332 3568899999999999999999999976432 0122
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC------hhHHHHHHHHHHhCCCcEEEecCcch--------hccccc
Q 013050 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSLDLLMEAKTNGDSITVETCPHY--------LAFSAE 272 (450)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~------~~~~~~~~~~~~~~g~~v~~~~~~~~--------~~~~~~ 272 (450)
.+.+.+.++++++++. +.++|+.|+++ . +.++.++++++.|+.++++.||++ +.++.+
T Consensus 229 ~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~~~~-~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l~~~ 300 (509)
T PRK09061 229 SSVDAYQELIAAAAET-------GAHMHICHVNSTSLRDID-RCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFFDPG 300 (509)
T ss_pred hHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcccHH-HHHHHHHHHHHcCCcEEEEecCcchhhhhhcccccCHH
Confidence 4567889999999987 99999999998 5 889999999999999999999999 665444
Q ss_pred ccCCCCCce---EE---cCCCCC-------------------------hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050 273 EIPDGDTRF---KC---APPIRD-------------------------AANKEKLWEALMDGHIDMLSSDHSPTVPELKL 321 (450)
Q Consensus 273 ~~~~~~~~~---~~---~~~~~~-------------------------~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~ 321 (450)
....++..+ .+ .|+++. ..+++.+++.+..+.. +++||+.|.....+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p~~~~~~~ 379 (509)
T PRK09061 301 WLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMPWTWSDGT 379 (509)
T ss_pred HHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc-eEecCCccccccccc
Confidence 333333333 44 777766 4457778888888776 999999887655542
Q ss_pred ccCCCccccCCCCcchh------hHHHHHHHHH-Hhc-CCCHHHHHHHHhhchhHHhC-----CCCCCccccCCCccEEE
Q 013050 322 LDEGNFLKAWGGISSLQ------FVLPVTWSYG-RKY-GVTLEQLASWWSERPAKLAG-----QVSKGAIAIGNHADLVV 388 (450)
Q Consensus 322 ~~~~~~~~~~~g~~~~~------~~~~~~~~~~-~~~-gls~~~al~~aT~~~A~~lg-----~~~~G~I~~G~~ADlvv 388 (450)
..|...+.+..+.. ..++..+... ++. .+|++++++++|.+||++|| +++.|+|++|+.|||+|
T Consensus 380 ---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l~~~G~i~~G~~ADlvv 456 (509)
T PRK09061 380 ---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAMRRKGRLQAGADADIVV 456 (509)
T ss_pred ---cccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccccCCEeeCCCCCcCEEE
Confidence 34666666665444 4556665554 443 59999999999999999999 85479999999999999
Q ss_pred EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCccccc
Q 013050 389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA 449 (450)
Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~~ 449 (450)
||.+...... . +... +.|+. .|+.|||||++||++|+++ +...||+|++
T Consensus 457 ~D~~~~~~~~---~--~~~~-~~~~~------gi~~v~v~G~~v~~~g~~~~~~~~G~~lr~ 506 (509)
T PRK09061 457 FDPETITDRA---T--FEDP-NRPSE------GVRHVLVNGVPVVSNGELVRDARPGRPVRR 506 (509)
T ss_pred Echhhccccc---c--cccc-CCCCC------CceEEEECCEEEEECCEecCCCCCCeEecC
Confidence 9987522211 1 1111 23333 3889999999999999986 6789999986
No 31
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=100.00 E-value=3.7e-40 Score=318.56 Aligned_cols=346 Identities=24% Similarity=0.302 Sum_probs=249.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|.|+||+|++|++..+. .+.++||++|++|+|||||+|+|+..+... ....+.++.+||||+++++.
T Consensus 18 ~~~~i~I~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~-----~~~~~~a~~~GvTt~~~~~~ 88 (415)
T cd01297 18 FTADVGIRDGRIAAIGPILST----SAREVIDAAGLVVAPGFIDVHTHYDGQVFW-----DPDLRPSSRQGVTTVVLGNC 88 (415)
T ss_pred ccceEEEECCEEEEEecCCCC----CCCeEEECCCCEEccCEeeeeecCCccccc-----CcchhhHHhCcEEEEEeccc
Confidence 357899999999999865431 246899999999999999999999875432 23467789999999999863
Q ss_pred CCCCCCCcH------------------------HHHHHHHHHHhcC-CceEEE---EeccccC---------CCccchHH
Q 013050 82 NSDPSTIST------------------------ETLKLKVDAAEKR-IYVDVG---FWGGLVP---------ENAYNASA 124 (450)
Q Consensus 82 ~~~~~~~~~------------------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~---------~~~~~~~~ 124 (450)
+..+..... +.+..+.+.+... ..+++. +++.+.. .+...+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~~~~~~~~~~~ 168 (415)
T cd01297 89 GVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRAVMGLDAREATEEELAK 168 (415)
T ss_pred cCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHHHhCcCCCCCCHHHHHH
Confidence 333332222 3445556666444 478887 6655552 22334555
Q ss_pred HHHH----HHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050 125 LEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 200 (450)
Q Consensus 125 ~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+.++ .+.|+.+++.+..|... ...+.+++.++++.|+++|.++.+|+++...
T Consensus 169 ~~~l~~~al~~Ga~g~~~~~~y~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~--------------------- 224 (415)
T cd01297 169 MRELLREALEAGALGISTGLAYAPR---LYAGTAELVALARVAARYGGVYQTHVRYEGD--------------------- 224 (415)
T ss_pred HHHHHHHHHHCCCeEEEcccccCCc---ccCCHHHHHHHHHHHHHcCCEEEEEECcccc---------------------
Confidence 5555 46799999987644210 1578999999999999999999999976432
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH---------HHHHHHHHhCCCcEEEecCcchhcccc
Q 013050 201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---------LDLLMEAKTNGDSITVETCPHYLAFSA 271 (450)
Q Consensus 201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~---------~~~~~~~~~~g~~v~~~~~~~~~~~~~ 271 (450)
.+.+.+.++++++++. +.++|+.|+++. +. ++.+++++..|+.++++++|+++.+
T Consensus 225 ------~e~~av~~~~~~a~~~-------g~r~~i~H~ss~-~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~-- 288 (415)
T cd01297 225 ------SILEALDELLRLGRET-------GRPVHISHLKSA-GAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS-- 288 (415)
T ss_pred ------cHHHHHHHHHHHHHHh-------CCCEEEEEEecC-CCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc--
Confidence 3566789999999976 899999999987 66 8999999999999999999975532
Q ss_pred cccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHh
Q 013050 272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRK 350 (450)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~ 350 (450)
...++++++. ..++++||+.|.+. . ..... +. ++.++.. ...
T Consensus 289 ---------------------~~~~~~l~~~-~~~~i~SDh~~~~~--~------~~~~~-~~------~~~~l~~~~~~ 331 (415)
T cd01297 289 ---------------------EDDVRRIMAH-PVVMGGSDGGALGK--P------HPRSY-GD------FTRVLGHYVRE 331 (415)
T ss_pred ---------------------HHHHHHHHcC-CCceeeeCCCcCCC--C------Ccchh-CC------HHHHHHHHhcc
Confidence 2223344444 88899999988641 0 00011 11 3344433 333
Q ss_pred c-CCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050 351 Y-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 429 (450)
Q Consensus 351 ~-gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 429 (450)
. .+|++++++++|.|||+++|+++.|+|++|+.|||||+|.+........ .++ ......|.+|||+|
T Consensus 332 ~~~~~~~~~~~~~t~~pA~~~gl~~~G~l~~G~~ADlvv~d~~~~~~~~~~----------~~~--~~~~~~v~~viv~G 399 (415)
T cd01297 332 RKLLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPDTLADRATF----------TRP--NQPAEGIEAVLVNG 399 (415)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCceeCCCCCCCEEEEcccccccccch----------hhh--ccCCCCceEEEECC
Confidence 3 4999999999999999999995469999999999999998754332211 111 11113699999999
Q ss_pred eEEEecCcccCCCCCc
Q 013050 430 NLVYKEGNHAPAACGS 445 (450)
Q Consensus 430 ~~v~~~g~~~~~~~g~ 445 (450)
++||++|++++...||
T Consensus 400 ~~v~~~~~~~~~~~G~ 415 (415)
T cd01297 400 VPVVRDGAFTGARPGR 415 (415)
T ss_pred EEEEECCEECCCCCCC
Confidence 9999999999888785
No 32
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=100.00 E-value=1.9e-35 Score=280.94 Aligned_cols=343 Identities=23% Similarity=0.291 Sum_probs=234.8
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccC----CCC-CCcc---cchHHHHHHHHhCCce
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD----DPG-RTEW---EGFPSGTKAAAAGGIT 74 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~----~~~-~~~~---~~~~~~~~~~~~~GvT 74 (450)
.++|.|+||||++|++... +..++||++|++|||||||+|+|.. .+. ...| ++|....+.++++|||
T Consensus 19 ~~~i~i~~g~I~~i~~~~~-----~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~~~~~~~~a~~gG~T 93 (383)
T PRK15446 19 DGSLLIEDGRIAAIDPGAS-----ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAALAAHDAQLAAAGIT 93 (383)
T ss_pred eeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHHHHHHHHHHHhCCcc
Confidence 5799999999999997532 1347899999999999999999543 232 2223 7789999999999999
Q ss_pred EEEeCCCCC-CC--CCCcH---HHHHHHHH--HHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccC-CC
Q 013050 75 TLIDMPLNS-DP--STIST---ETLKLKVD--AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-GI 145 (450)
Q Consensus 75 ~~~~~~~~~-~~--~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 145 (450)
|++++.... .+ ..... ..+..... .......+++++|+.+...+.+..+++.++.+.|+.++|.|+++. +.
T Consensus 94 t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~~~g~~~~k~fm~~~p~~ 173 (383)
T PRK15446 94 TVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALLAHPRVDLVSLMDHTPGQ 173 (383)
T ss_pred EeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHhcCCCcCEEEEeCCCCcc
Confidence 999974222 23 11112 13334444 334667799999999888777788899999999999999999775 32
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccC
Q 013050 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 225 (450)
Q Consensus 146 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 225 (450)
..+ ...+.+++.. +.+.| .+|++....+..... .|...+.+.++++++.+++.
T Consensus 174 ~~~--~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~~-----------------~~~~~~~e~i~~~v~~A~~~--- 226 (383)
T PRK15446 174 RQF--RDLEKYREYY--AGKYG---LSDEEFDAFVEERIA-----------------LSARYAPPNRRAIAALARAR--- 226 (383)
T ss_pred ccc--cCHHHHHHHH--HhhcC---CCHHHHHHHHHHHHH-----------------hHhhcCHHHHHHHHHHHHHC---
Confidence 222 2333344444 44667 678877665442222 14444567899999999987
Q ss_pred CCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc-C-CCCC--hhhHHHHHHHHh
Q 013050 226 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA-P-PIRD--AANKEKLWEALM 301 (450)
Q Consensus 226 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~l~~~~~ 301 (450)
|.++ ..|... ..+.++.+++.|+.++.. +...... ......+...... | +++. ......++++++
T Consensus 227 ----g~~v-~sH~~~---~~~~i~~a~~~Gv~~~e~--~~~~e~~-~~~~~~g~~v~~~~p~~~r~~~~~~~~~~~~~~~ 295 (383)
T PRK15446 227 ----GIPL-ASHDDD---TPEHVAEAHALGVAIAEF--PTTLEAA-RAARALGMSVLMGAPNVVRGGSHSGNVSALDLAA 295 (383)
T ss_pred ----CCce-eecCCC---CHHHHHHHHHcCCceeeC--CCcHHHH-HHHHHCCCEEEeCCcccccCCcccchHhHHHHHH
Confidence 8888 477742 224577777778766631 1111110 1111122222222 2 2332 344567888999
Q ss_pred cCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 013050 302 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 381 (450)
Q Consensus 302 ~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G 381 (450)
.|+.++++||+.|... +...+......++|++++++++|.|||+++|+++.|+|++|
T Consensus 296 ~Gv~~~lgSD~~p~~~-----------------------~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~~~G~I~~G 352 (383)
T PRK15446 296 AGLLDILSSDYYPASL-----------------------LDAAFRLADDGGLDLPQAVALVTANPARAAGLDDRGEIAPG 352 (383)
T ss_pred CCCcEEEEcCCChhhH-----------------------HHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCcCcCCC
Confidence 9999999999865421 22233445567899999999999999999999445999999
Q ss_pred CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
+.|||+|+|.++. . ..+..||++|++||+.
T Consensus 353 ~~ADlvv~d~~~~--------~----------------~~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 353 KRADLVRVRRAGG--------L----------------PVVRAVWRGGRRVFLA 382 (383)
T ss_pred CcCCEEEEcCCCC--------C----------------cchheEEECCEEEEeC
Confidence 9999999997620 0 2578899999999875
No 33
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=100.00 E-value=6.6e-35 Score=276.30 Aligned_cols=341 Identities=24% Similarity=0.303 Sum_probs=242.3
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCC------CCCCcc---cchHHHHHHHHhCCc
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------PGRTEW---EGFPSGTKAAAAGGI 73 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~------~~~~~~---~~~~~~~~~~~~~Gv 73 (450)
.++|.|+||+|++|++... ...++||++|++|||||||+|+|... ++. .| +.+.+..+.++++||
T Consensus 15 ~~~i~i~dg~I~~i~~~~~-----~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~-~~~~~~~~~~~~~~~aa~Gi 88 (376)
T TIGR02318 15 EGSVVIEDGAIADIGEGPV-----ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGV-DWPIDAAIVEHDKQLAAAGI 88 (376)
T ss_pred eeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEeccEEEcccCccccCcCCCCCC-CcchHHHHHHHHHHHhhCCc
Confidence 4689999999999997432 24568999999999999999999876 554 55 678889999999999
Q ss_pred eEEEeCCCCC--CCCCCcHHHHHHHH---HHHhcC--CceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050 74 TTLIDMPLNS--DPSTISTETLKLKV---DAAEKR--IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 146 (450)
Q Consensus 74 T~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (450)
||+++++... .+.....+.+.... ..+..+ ..+++.+|+.+....++..+++..+.+.|+.+++.|+++.+ .
T Consensus 89 TT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-~ 167 (376)
T TIGR02318 89 TTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELIDDPRVDLISLMDHTP-G 167 (376)
T ss_pred ceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHhcCCCcCEEEEeCCCC-C
Confidence 9999997333 45556777777766 555544 77899999988766677788999999999999999998765 3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
..+..+.+.+.+.+.. +.| .+|++....+.......+ . ...+.+.++.+++++.
T Consensus 168 ~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~----------------~-~~~e~i~~~v~~A~~~---- 221 (376)
T TIGR02318 168 QRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARRA----------------E-YGLANRSEIAALARAR---- 221 (376)
T ss_pred cccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHh----------------h-ccHHHHHHHHHHHHHC----
Confidence 3345677777766654 555 778877666443332221 0 0146788999999877
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc-eEEcC-CCCChhh--HHHHHHHHhc
Q 013050 227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR-FKCAP-PIRDAAN--KEKLWEALMD 302 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~l~~~~~~ 302 (450)
+.++ ..|.. ++.+.++++++.|..+... +-.... .......+.. ..+.| +++.... ...+++++..
T Consensus 222 ---G~~v-~sH~~---~~~e~i~~a~~~Gv~~~E~--~~t~e~-a~~~~~~G~~v~~~~p~~~r~~~~~~~~~l~~~~~~ 291 (376)
T TIGR02318 222 ---GIPL-ASHDD---DTPEHVAEAHDLGVTISEF--PTTLEA-AKEARSLGMQILMGAPNIVRGGSHSGNLSARELAHE 291 (376)
T ss_pred ---CCeE-EEecC---CCHHHHHHHHHCCCChhcc--CCCHHH-HHHHHHcCCeEEECCccccccccccchHHHHHHHHC
Confidence 8887 47774 3344677777777644331 110000 1111222444 33334 3343332 5678899999
Q ss_pred CCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 013050 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 381 (450)
Q Consensus 303 g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G 381 (450)
|+.++++||+.|... +...+.... ..+++++++++++|.|||+++|++++|+|++|
T Consensus 292 G~~~~l~SD~~p~~~-----------------------l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~~G~I~~G 348 (376)
T TIGR02318 292 GLLDVLASDYVPASL-----------------------LLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLSDRGSIAPG 348 (376)
T ss_pred CCcEEEEcCCCcHHH-----------------------HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCCCCcCCCC
Confidence 999999999876421 222233333 34799999999999999999999667999999
Q ss_pred CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433 (450)
Q Consensus 382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 433 (450)
++|||+++|... . . ..+..||++|++||
T Consensus 349 ~~ADlvvvd~~~--------~----~------------~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 349 KRADLVRVHRVD--------G----V------------PRIRAVWRAGRRVY 376 (376)
T ss_pred CcccEEEEcCCC--------C----C------------ccceEEEECCEEeC
Confidence 999999999531 0 0 26789999999986
No 34
>PRK06687 chlorohydrolase; Validated
Probab=100.00 E-value=1.8e-34 Score=280.20 Aligned_cols=357 Identities=17% Similarity=0.179 Sum_probs=205.5
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc---------c--------c-----
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---------W--------E----- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~---------~--------~----- 59 (450)
.+++|+|+||+|++|++..+... ....++||+.|++|+|||||+|+|+....... | +
T Consensus 20 ~~g~VlV~~g~I~aVg~~~~~~~-~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~ 98 (419)
T PRK06687 20 LDGILAVKDSQIVYVGQDKPAFL-EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTP 98 (419)
T ss_pred cCcEEEEECCEEEEecCcccccc-cccCeEEeCCCCEEccceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCH
Confidence 46899999999999998644321 13468999999999999999999996653210 0 0
Q ss_pred -chH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE--eccccCCCccchHHHHHHH---
Q 013050 60 -GFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF--WGGLVPENAYNASALEALL--- 129 (450)
Q Consensus 60 -~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--- 129 (450)
... ....+++.+||||+.++. ...+ . .........+.. .....+.. .........+..+...+++
T Consensus 99 ~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~-~-~~~~~~~a~~~~--Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 173 (419)
T PRK06687 99 DMTTNAVKEALTEMLQSGTTTFNDMY-NPNG-V-DIQQIYQVVKTS--KMRCYFSPTLFSSETETTAETISRTRSIIDEI 173 (419)
T ss_pred HHHHHHHHHHHHHHHhcCcceeehhh-cccc-c-cHHHHHHHHHHh--CCceEeccccccCCcccHHHHHHHHHHHHHHH
Confidence 011 234467999999999985 3221 1 122222222211 11222211 1111111112222333333
Q ss_pred -HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHH
Q 013050 130 -NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSW 207 (450)
Q Consensus 130 -~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (450)
..+...++..+++.. ...++++.++++++.|+++|+++.+|+.+.. .....+...+
T Consensus 174 ~~~~~~~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g------------------- 231 (419)
T PRK06687 174 LKYKNPNFKVMVAPHS---PYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYG------------------- 231 (419)
T ss_pred hccCCCceEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHC-------------------
Confidence 223334555554432 2468999999999999999999999995432 1111111110
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287 (450)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (450)
....+...+. + .-+.++.+.|+... +.+.++.+++.|+.+.. ||...... .
T Consensus 232 -----~~~~~~l~~~--g--~l~~~~~~~H~~~~--~~~~~~~la~~g~~v~~--~P~sn~~l----------~------ 282 (419)
T PRK06687 232 -----KRPLAFLEEL--G--YLDHPSVFAHGVEL--NEREIERLASSQVAIAH--NPISNLKL----------A------ 282 (419)
T ss_pred -----cCHHHHHHHc--C--CCCCCeEEEEEecC--CHHHHHHHHHcCCeEEE--CcHHhhhh----------c------
Confidence 0011111111 0 01344555666542 23456666777765554 66532110 0
Q ss_pred CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHH---hcCCCHHHHHHHHh
Q 013050 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR---KYGVTLEQLASWWS 363 (450)
Q Consensus 288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~---~~gls~~~al~~aT 363 (450)
.....+.++++.|+.+++|||+.+.+....++ ..+ .....+... ...++++++++|+|
T Consensus 283 ---~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT 344 (419)
T PRK06687 283 ---SGIAPIIQLQKAGVAVGIATDSVASNNNLDMF---------------EEGRTAALLQKMKSGDASQFPIETALKVLT 344 (419)
T ss_pred ---cCCCcHHHHHHCCCeEEEeCCCCCCCCChhHH---------------HHHHHHHHHhccccCCCccCCHHHHHHHHh
Confidence 01112456788999999999975433222111 111 111111111 12489999999999
Q ss_pred hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCccc
Q 013050 364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHA 439 (450)
Q Consensus 364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~ 439 (450)
.|||+++|+ +++|+|++||.|||+++|.+...... + . .+|+...++ ..+|..|||+|++|+++|+++
T Consensus 345 ~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~---p-----~-~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~ 415 (419)
T PRK06687 345 IEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQ---P-----Q-ENMLSHLVYAVKSSDVDDVYIAGEQVVKQGQVL 415 (419)
T ss_pred HHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcC---C-----c-cCHHHHhheeCCCCCccEEEECCEEEEECCeEe
Confidence 999999999 56899999999999999976321111 1 1 223333333 247999999999999999998
Q ss_pred CCC
Q 013050 440 PAA 442 (450)
Q Consensus 440 ~~~ 442 (450)
..+
T Consensus 416 ~~d 418 (419)
T PRK06687 416 TVE 418 (419)
T ss_pred cCC
Confidence 643
No 35
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=100.00 E-value=3.1e-34 Score=278.45 Aligned_cols=364 Identities=13% Similarity=0.118 Sum_probs=206.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------ccc--c----------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EWE--G---------- 60 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~~--~---------- 60 (450)
.+++|+|+||+|++|++..... .+++.++||+.|++|||||||+|+|+....+. .|- .
T Consensus 21 ~~g~V~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~l~~wl~~~~~~~~~~~~~ 99 (435)
T PRK15493 21 ENGYIIVENDQIIDVNSGEFAS-DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDMLLQPWLETRIWPLESQFTP 99 (435)
T ss_pred cCcEEEEECCEEEEEcCccccc-cCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCCHHHHHHhchhhchhcCCH
Confidence 5689999999999999853221 13467899999999999999999999643111 110 0
Q ss_pred ------hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccCCCccchHHHHHHHHc--
Q 013050 61 ------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVPENAYNASALEALLNA-- 131 (450)
Q Consensus 61 ------~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 131 (450)
......+++.+||||+.|+. .... .....+....+....+..+....+.. .........+....+.+.
T Consensus 100 e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~--~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (435)
T PRK15493 100 ELAVASTELGLLEMVKSGTTSFSDMF-NPIG--VDQDAIMETVSRSGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYY 176 (435)
T ss_pred HHHHHHHHHHHHHHHhCCccEEEccc-cccc--cCHHHHHHHHHHcCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhc
Confidence 01124577999999999984 2211 11122222222221111111111110 001111112222223221
Q ss_pred C-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCccccccccCCCChHHHH
Q 013050 132 G-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209 (450)
Q Consensus 132 g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (450)
+ ...++....+. ....++++.++++.+.|+++|+++.+|+.+... ........+
T Consensus 177 ~~~~~i~~~~~~~---~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g--------------------- 232 (435)
T PRK15493 177 NESGMLTTMVAPH---SPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYG--------------------- 232 (435)
T ss_pred CCCCCeEEEEeCC---CCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC---------------------
Confidence 1 12244433332 223578899999999999999999999944322 111111100
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC
Q 013050 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 289 (450)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (450)
...++.+.+.. .-+.+..+.|+... +.+.++.+++.|+.+.. ||.....-
T Consensus 233 ---~~~~~~l~~~G----ll~~~~~~~H~~~l--~~~d~~~la~~g~~v~~--~P~sn~~l------------------- 282 (435)
T PRK15493 233 ---KRPVEYAASCG----LFKRPTVIAHGVVL--NDNERAFLAEHDVRVAH--NPNSNLKL------------------- 282 (435)
T ss_pred ---CCHHHHHHHcC----CCCCCcEEEEeecC--CHHHHHHHHHcCCeEEE--ChHHHHHH-------------------
Confidence 00112222210 01344555666542 22345566667765554 77543210
Q ss_pred hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCHHHHHHHHhhch
Q 013050 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERP 366 (450)
Q Consensus 290 ~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~~~al~~aT~~~ 366 (450)
......+.++++.|+.+++|||+.+.+...+++. +..+...++... ...++++++++++|.||
T Consensus 283 ~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~g 348 (435)
T PRK15493 283 GSGIANVKAMLEAGIKVGIATDSVASNNNLDMFE--------------EMRIATLLQKGIHQDATALPVETALTLATKGA 348 (435)
T ss_pred hcCcccHHHHHHCCCeEEEccCccccCCCcCHHH--------------HHHHHHHHHhhccCCCCcCCHHHHHHHHhHHH
Confidence 0112235567889999999999754332211110 111222222211 24699999999999999
Q ss_pred hHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECCeEEEecCcccCCCC
Q 013050 367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAAC 443 (450)
Q Consensus 367 A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G~~v~~~g~~~~~~~ 443 (450)
|+++|+++.|+|++||.||||++|.+....+.+. ..|+...++. .+|.+|||+||+|++||+++..+.
T Consensus 349 A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~~p~---------~d~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~d~ 419 (435)
T PRK15493 349 AEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPA---------DEVLSHLVYAASGKDISDVIINGKRVVWNGECKTLDE 419 (435)
T ss_pred HHHcCCCCCCccCCCCcCCEEEEcCCCCCCcCCc---------cChHHhEEEeCCCCCccEEEECCEEEEECCeECCCCH
Confidence 9999995589999999999999996532222111 2333334432 469999999999999999987665
Q ss_pred Ccc
Q 013050 444 GSP 446 (450)
Q Consensus 444 g~~ 446 (450)
...
T Consensus 420 ~~~ 422 (435)
T PRK15493 420 ERI 422 (435)
T ss_pred HHH
Confidence 443
No 36
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=100.00 E-value=6e-33 Score=271.97 Aligned_cols=359 Identities=16% Similarity=0.158 Sum_probs=208.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------c-c----------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------W-E---------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------~-~---------- 59 (450)
.+++|+|+||+|++|++..+.+. ++.++||+.|++|||||||+|+|+....... | +
T Consensus 22 ~~~~v~I~~g~I~~Vg~~~~~~~--~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 99 (451)
T PRK08203 22 ADGGLVVEGGRIVEVGPGGALPQ--PADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLT 99 (451)
T ss_pred eccEEEEECCEEEEEeCCccCCC--CCCeEEeCCCCEEecceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCC
Confidence 46799999999999999755321 3568999999999999999999997531110 0 0
Q ss_pred --c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc----------ccCC-----C
Q 013050 60 --G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG----------LVPE-----N 118 (450)
Q Consensus 60 --~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~ 118 (450)
. ......+++++|||+++++. ...+. .....+....+..... .++...... .... .
T Consensus 100 ~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~-~~~~~~~~~~~a~~~~-G~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (451)
T PRK08203 100 PEMVRVATQTALAELLLSGCTTSSDHH-YLFPN-GLRDALDDQIEAAREI-GMRFHATRGSMSLGESDGGLPPDSVVEDE 176 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCcCEEEcce-eeccc-cccchHHHHHHHHHHc-CCeEEEecceeecCCccCCCCccccccCH
Confidence 0 11223477899999999985 22221 1111222222222221 222211110 0110 0
Q ss_pred ccchHHHHHHHHcCC-----cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCC
Q 013050 119 AYNASALEALLNAGV-----LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLD 192 (450)
Q Consensus 119 ~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~ 192 (450)
.+.++...++++... ..++..+... ....++.+.++++++.|+++|+++.+|+.+.. ....+....+
T Consensus 177 ~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g---- 249 (451)
T PRK08203 177 DAILADSQRLIDRYHDPGPGAMLRIALAPC---SPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFG---- 249 (451)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC----
Confidence 112334444444321 2233333222 22357889999999999999999999984322 1111111000
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050 193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 272 (450)
Q Consensus 193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 272 (450)
...++.+ .+. + ..+.++.+.|+... +.+.++.+++.|+.++. ||......
T Consensus 250 ----------------~~~~~~l----~~~--g--~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~~~~~l-- 299 (451)
T PRK08203 250 ----------------MRPVDYL----EDL--G--WLGPDVWLAHCVHL--DDAEIARLARTGTGVAH--CPCSNMRL-- 299 (451)
T ss_pred ----------------CCHHHHH----HHc--C--CCCCCeEEEEEeCC--CHHHHHHHHhcCCeEEE--CcHHhhhh--
Confidence 0001221 111 0 11445666666652 23456777777766554 66432110
Q ss_pred ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--h
Q 013050 273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--K 350 (450)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~ 350 (450)
+ .....+.++++.|+.+++|||+..++....++ .+..+...+.... .
T Consensus 300 -----~------------~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 348 (451)
T PRK08203 300 -----A------------SGIAPVRELRAAGVPVGLGVDGSASNDGSNLI--------------GEARQALLLQRLRYGP 348 (451)
T ss_pred -----c------------cCCCCHHHHHHCCCeEEEecCCCccCCCcCHH--------------HHHHHHHHHhhcccCC
Confidence 0 01123467788999999999975432111110 0111111112111 2
Q ss_pred cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE--eeEEEEEEEC
Q 013050 351 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISR 428 (450)
Q Consensus 351 ~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~v~ 428 (450)
..++++++++++|.|||+++|+++.|+|++||.|||+|+|.+.+... .. ++|+.+..+ ..+|..||++
T Consensus 349 ~~i~~~~~l~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~---------~~-~~p~~~l~~~~~~~v~~v~v~ 418 (451)
T PRK08203 349 DAMTAREALEWATLGGARVLGRDDIGSLAPGKLADLALFDLDELRFA---------GA-HDPVAALVLCGPPRADRVMVG 418 (451)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCccCEEEEcCCccccC---------Cc-cChHHHHHccCCCCccEEEEC
Confidence 35999999999999999999996579999999999999998864221 12 445544433 3579999999
Q ss_pred CeEEEecCcccCCCC
Q 013050 429 GNLVYKEGNHAPAAC 443 (450)
Q Consensus 429 G~~v~~~g~~~~~~~ 443 (450)
|++||++|++++.+.
T Consensus 419 G~~v~~~~~~~~~d~ 433 (451)
T PRK08203 419 GRWVVRDGQLTTLDL 433 (451)
T ss_pred CEEEEECCcccCCCH
Confidence 999999999987543
No 37
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=100.00 E-value=1.6e-32 Score=258.03 Aligned_cols=321 Identities=19% Similarity=0.212 Sum_probs=242.5
Q ss_pred EeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccccCC
Q 013050 39 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPE 117 (450)
Q Consensus 39 v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 117 (450)
-+||+||+|+|+..+ +++.+.++.+.++| |++++++ ++.|.....+.+........... +.++..++.+...
T Consensus 2 ~~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (335)
T cd01294 2 TIPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT 74 (335)
T ss_pred cCCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc
Confidence 379999999999874 66889999999999 9999998 77776666665666555555554 4566665544222
Q ss_pred CccchHHHHHHHHc-CCcEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 118 NAYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 118 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
.....+++.++.+. |+.++|.|+...... +....+.+.+.++++.+.+.|++|.+|+++.....
T Consensus 75 ~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~-------------- 140 (335)
T cd01294 75 ENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI-------------- 140 (335)
T ss_pred CCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc--------------
Confidence 22245788888876 999999986321111 11223567899999999999999999997754310
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 275 (450)
.+...+.+.+.++..++++ +++.++|+.|+++. ++++.++++++ .+++++||||+.++.+.+.
T Consensus 141 -------~~~~~e~~~~~~~~~lA~~------~p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~ 203 (335)
T cd01294 141 -------DVLDREAKFIPVLEPLAQR------FPKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLL 203 (335)
T ss_pred -------cchhhHHHHHHHHHHHHHH------cCCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhc
Confidence 0111234445678888875 35899999999998 99999987765 6999999999999998875
Q ss_pred C--CCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcC
Q 013050 276 D--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 352 (450)
Q Consensus 276 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 352 (450)
. ++..++++||+|...+++.+|+++.+|... +++|||+|+....+.. .++ ..|+.+.+..++.++.... .+
T Consensus 204 ~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g--~~Gi~~~~~~l~~~~~~~~-~~ 277 (335)
T cd01294 204 GGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG--CAGIFSAPIALPYLAEVFE-EH 277 (335)
T ss_pred CCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC--CccccCHHHHHHHHHHHHh-cc
Confidence 5 588899999999999999999999999999 5999999998777642 222 2255666657777765454 48
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCC
Q 013050 353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415 (450)
Q Consensus 353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (450)
+|+++++++.+.|||++||+ ++.|+ |++++ .+|++..+ .+.+... ++||+|
T Consensus 278 l~l~~~v~~~s~nPA~i~gl~~~kg~--------i~~~~--~~~~v~~~-~~~s~~~-~sp~~g 329 (335)
T cd01294 278 NALDKLEAFASDNGPNFYGLPPNKKT--------ITLVK--EPWKVPEK-IPFGNNG-VVPFRA 329 (335)
T ss_pred CCHHHHHHHHHhHHHHHhCCCCCCCe--------EEEEe--eceEcCch-hccCCCc-eecccC
Confidence 99999999999999999999 65555 55555 56888877 7788887 889886
No 38
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=100.00 E-value=4.8e-33 Score=271.24 Aligned_cols=351 Identities=17% Similarity=0.187 Sum_probs=205.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCC--------------------cc
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT--------------------EW 58 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~--------------------~~ 58 (450)
.+++|+|+||||++|++..+.+. ++..++||++|++|+|||||+|+|+..+ +.. ..
T Consensus 18 ~~~~v~i~~g~I~~ig~~~~~~~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 96 (411)
T cd01298 18 EDGDVLVEDGRIVAVGPALPLPA-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTE 96 (411)
T ss_pred ecceEEEECCEEEEecCcccccc-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCH
Confidence 46799999999999998654321 2467899999999999999999998642 110 00
Q ss_pred cchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-------ccchHHHHH
Q 013050 59 EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-------AYNASALEA 127 (450)
Q Consensus 59 ~~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 127 (450)
+++. ....+++++|||++++++ ...+ .......+.. .++........... ....++..+
T Consensus 97 ~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~-----~~~~~~~~~~----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
T cd01298 97 EDVYLGALLALAEMIRSGTTTFADMY-FFYP-----DAVAEAAEEL----GIRAVLGRGIMDLGTEDVEETEEALAEAER 166 (411)
T ss_pred HHHHHHHHHHHHHHHhcCccEEECcc-ccch-----HHHHHHHHHh----CCeEEEEcceecCCCcccccHHHHHHHHHH
Confidence 1111 234456789999999986 3322 1222222111 12222211111111 112233333
Q ss_pred HH----HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCC
Q 013050 128 LL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKT 202 (450)
Q Consensus 128 ~~----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
++ ..|...++.++.... ....+.+.+.++++.|+++|+++.+|+.+. ...+......+
T Consensus 167 ~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~-------------- 229 (411)
T cd01298 167 LIREWHGAADGRIRVALAPHA---PYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG-------------- 229 (411)
T ss_pred HHHHhcCCCCCceEEEEeCCC---CccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC--------------
Confidence 33 334666777654432 134678999999999999999999998432 22111111100
Q ss_pred CChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceE
Q 013050 203 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 282 (450)
Q Consensus 203 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 282 (450)
...++.+.+. + ..+.++.+.|+... +.+.++.+++.|+.+ ..||...... +
T Consensus 230 ----------~~~~~~~~~~--~--~~~~~~~i~H~~~l--~~~~~~~l~~~gi~~--~~~p~~~~~~-------~---- 280 (411)
T cd01298 230 ----------KRPVEYLEEL--G--LLGPDVVLAHCVWL--TDEEIELLAETGTGV--AHNPASNMKL-------A---- 280 (411)
T ss_pred ----------CCHHHHHHHc--C--CCCCCeEEEEecCC--CHHHHHHHHHcCCeE--EEChHHhhhh-------h----
Confidence 0011111111 0 11455666777652 234577777777654 4477542110 0
Q ss_pred EcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchh-hHHHHHHHHHH---hcCCCHHHH
Q 013050 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ-FVLPVTWSYGR---KYGVTLEQL 358 (450)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~---~~gls~~~a 358 (450)
.....+.++++.|+.+++|||+.+...... ... ..+...+.... +.++|++++
T Consensus 281 --------~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~a 337 (411)
T cd01298 281 --------SGIAPVPEMLEAGVNVGLGTDGAASNNNLD---------------MFEEMRLAALLQKLAHGDPTALPAEEA 337 (411)
T ss_pred --------hCCCCHHHHHHCCCcEEEeCCCCccCCCcC---------------HHHHHHHHHHHhccccCCCCcCCHHHH
Confidence 011235677889999999999754321110 001 11111111111 136999999
Q ss_pred HHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcc
Q 013050 359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 438 (450)
Q Consensus 359 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 438 (450)
++++|.|||+++|+++.|+|++|+.|||+|+|.+.++..+.+ ++..... + .....+|..||++|++||++|++
T Consensus 338 l~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~----~--~~~~~~v~~v~~~G~~v~~~~~~ 410 (411)
T cd01298 338 LEMATIGGAKALGLDEIGSLEVGKKADLILIDLDGPHLLPVH-DPISHLV----Y--SANGGDVDTVIVNGRVVMEDGEL 410 (411)
T ss_pred HHHHHhhHHHHhCCccCCCcCCCccCCEEEEeCCCCccCCcc-chhhHhe----E--ecCCCCeeEEEECCEEEEECCEe
Confidence 999999999999996589999999999999998865544333 2211110 0 01235899999999999999986
Q ss_pred c
Q 013050 439 A 439 (450)
Q Consensus 439 ~ 439 (450)
+
T Consensus 411 ~ 411 (411)
T cd01298 411 L 411 (411)
T ss_pred C
Confidence 4
No 39
>PRK06380 metal-dependent hydrolase; Provisional
Probab=100.00 E-value=9e-33 Score=268.44 Aligned_cols=359 Identities=16% Similarity=0.168 Sum_probs=204.3
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc----------------------c
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----------------------E 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~----------------------~ 59 (450)
.+++|+|+||+|++|++..+ ...++||+.|++|+|||||+|+|+....+... +
T Consensus 20 ~~~~v~i~~g~I~~ig~~~~-----~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e 94 (418)
T PRK06380 20 LQGNVYIEGNKIVYVGDVNE-----EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTRE 94 (418)
T ss_pred eeeeEEEECCEEEEecCCCC-----CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHH
Confidence 45799999999999998532 24579999999999999999999975422210 0
Q ss_pred c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccCCCccchHHHHHHHHc--C
Q 013050 60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVPENAYNASALEALLNA--G 132 (450)
Q Consensus 60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--g 132 (450)
+ ......+++++|||+++++. .. .+.+....+....+..+.+..... .........+....+++. +
T Consensus 95 ~~~~~~~~~~~e~l~~G~Tt~~d~~-~~------~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (418)
T PRK06380 95 GIYNSAKLGMYEMINSGITAFVDLY-YS------EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHRN 167 (418)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEccc-cC------hHHHHHHHHHhCCeEEEecccccCCcccccchHHHHHHHHHHHhcC
Confidence 0 11234477899999999885 11 122222222221111111111110 000001111222222221 1
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 211 (450)
...+...+.+ .+...++.+.+++++++|+++|+++.+|+.+.. .+.......+ . ..
T Consensus 168 ~~~v~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------~------~~ 224 (418)
T PRK06380 168 EELVTPSIGV---QGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTG--------------E------RP 224 (418)
T ss_pred CCCeEEEEEC---CCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhC--------------C------CH
Confidence 1112222222 223467899999999999999999999995532 1111111100 0 01
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChh
Q 013050 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 291 (450)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
++.+..+.. .+.++.+.|+... +.+.++.+++.|+.+.. ||...... + . .
T Consensus 225 ie~~~~~g~--------l~~~~~~~H~~~l--~~~d~~~la~~g~~v~~--~P~sn~~l-------~--~---------~ 274 (418)
T PRK06380 225 VEHLEKIGF--------LNSKLIAAHCVWA--TYHEIKLLSKNGVKVSW--NSVSNFKL-------G--T---------G 274 (418)
T ss_pred HHHHHHCCC--------CCCCeEEEEeecC--CHHHHHHHHHcCCEEEE--CHHHHHhh-------c--c---------C
Confidence 122111111 1345556666653 23456677777765544 66532110 0 0 0
Q ss_pred hHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--h-cCCCHHHHHHHHhhchhH
Q 013050 292 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--K-YGVTLEQLASWWSERPAK 368 (450)
Q Consensus 292 ~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~-~gls~~~al~~aT~~~A~ 368 (450)
....+.++++.|+.+++|||....+...+++. ...+........ . ..++++++++++|.|||+
T Consensus 275 g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~ 340 (418)
T PRK06380 275 GSPPIPEMLDNGINVTIGTDSNGSNNSLDMFE--------------AMKFSALSVKNERWDASIIKAQEILDFATINAAK 340 (418)
T ss_pred CCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHH--------------HHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHH
Confidence 11235577889999999999743321111100 000111111111 1 138999999999999999
Q ss_pred HhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECCeEEEecCcccCCCCCc
Q 013050 369 LAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAACGS 445 (450)
Q Consensus 369 ~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G~~v~~~g~~~~~~~g~ 445 (450)
+||+ +.|+|++||+||||++|.+.+...+.. . .+|+...++. .+|..|||+|++++++|++++.+..+
T Consensus 341 ~lg~-~~G~l~~G~~ADlvv~d~~~~~~~p~~-------~-~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~ 411 (418)
T PRK06380 341 ALEL-NAGSIEVGKLADLVILDARAPNMIPTR-------K-NNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNGFNPDE 411 (418)
T ss_pred HhCC-CCCccCCCccCCEEEEeCCCCccCCCC-------c-cChHHheeecCCCCceeEEEECCEEEEECCeECccCHHH
Confidence 9999 589999999999999998754333210 1 2334333332 47999999999999999999877666
Q ss_pred ccc
Q 013050 446 PIL 448 (450)
Q Consensus 446 ~~~ 448 (450)
.+.
T Consensus 412 ~~~ 414 (418)
T PRK06380 412 FID 414 (418)
T ss_pred Hhh
Confidence 553
No 40
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=5.9e-33 Score=271.18 Aligned_cols=354 Identities=16% Similarity=0.142 Sum_probs=203.4
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC---CCc------------c--c----c
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTE------------W--E----G 60 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~---~~~------------~--~----~ 60 (450)
.+++|+|+||+|++|++....+..+++.++||+.|++|||||||+|+|+.... ... + + +
T Consensus 27 ~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~ 106 (443)
T PRK09045 27 EDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADDLPLMTWLQDHIWPAEGAWVS 106 (443)
T ss_pred eccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCCCCHHHHHHhhhhhhhhccCC
Confidence 46789999999999998654332234678999999999999999999986421 100 0 0 0
Q ss_pred -------hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC----Cc---cchHHHH
Q 013050 61 -------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----NA---YNASALE 126 (450)
Q Consensus 61 -------~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~ 126 (450)
......+++++|||+++++. . ..... .+... ...++.......... .. +.++...
T Consensus 107 ~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~------~~~~~---~~~~~-~~G~R~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (443)
T PRK09045 107 EEFVRDGTLLAIAEMLRGGTTCFNDMY-F------FPEAA---AEAAH-QAGMRAQIGMPVLDFPTAWASDADEYLAKGL 175 (443)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEecc-c------cHHHH---HHHHH-HcCCeEEEecccccCCCccccCHHHHHHHHH
Confidence 11234577899999999874 1 11111 11111 111222221111111 01 1122222
Q ss_pred HHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCC
Q 013050 127 ALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTR 203 (450)
Q Consensus 127 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
++.+ .+...++..+.+.. ...++.+.++++++.|+++|+++.+|+... ..+...+...+ .
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------~ 238 (443)
T PRK09045 176 ELHDQWRHHPLISTAFAPHA---PYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHG--------------Q 238 (443)
T ss_pred HHHHHhcCCCcEEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhC--------------C
Confidence 2222 23334555443322 235788999999999999999999999532 22111111110 0
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050 204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 283 (450)
Q Consensus 204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (450)
..++.+.++. ..+.++.+.|+... +.+.++.+++.|+.+.. ||.....
T Consensus 239 ------~~~~~l~~~g--------~l~~r~~~~H~~~l--~~~~~~~la~~g~~i~~--~P~~~~~-------------- 286 (443)
T PRK09045 239 ------RPLARLARLG--------LLGPRLIAVHMTQL--TDAEIALLAETGCSVVH--CPESNLK-------------- 286 (443)
T ss_pred ------CHHHHHHHcC--------CCCCCeEEEEecCC--CHHHHHHHHHcCCeEEE--CHHHHhh--------------
Confidence 0012222111 11445666677652 23346666666765544 6643210
Q ss_pred cCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCHHHHHH
Q 013050 284 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLAS 360 (450)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~~~al~ 360 (450)
.......+.++++.|+.+++|||+.+.+...+++ .+..+...+.... ..+++++++++
T Consensus 287 -----~~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~al~ 347 (443)
T PRK09045 287 -----LASGFCPVAKLLQAGVNVALGTDGAASNNDLDLF--------------GEMRTAALLAKAVAGDATALPAHTALR 347 (443)
T ss_pred -----hccCCCcHHHHHHCCCeEEEecCCCCCCCCccHH--------------HHHHHHHHHHhhccCCCCcCCHHHHHH
Confidence 0011123456688999999999975432211110 0111111111111 24699999999
Q ss_pred HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce---EeeEEEEEEECCeEEEecC
Q 013050 361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEG 436 (450)
Q Consensus 361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~~g 436 (450)
++|.|||+++|+ ++.|+|++||.|||||+|.+++...+. .+++...+ ...+|..|||+|++||++|
T Consensus 348 ~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~----------~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g 417 (443)
T PRK09045 348 MATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPV----------YDPVSQLVYAAGREQVSHVWVAGKQLLDDR 417 (443)
T ss_pred HHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCc----------cChHhHhhEeCCCCCccEEEECCEEEEECC
Confidence 999999999999 678999999999999999886322111 11111111 1257999999999999999
Q ss_pred cccCCCCC
Q 013050 437 NHAPAACG 444 (450)
Q Consensus 437 ~~~~~~~g 444 (450)
++++.+..
T Consensus 418 ~~~~~d~~ 425 (443)
T PRK09045 418 ELTTLDEA 425 (443)
T ss_pred cCCCCCHH
Confidence 99976543
No 41
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=1e-33 Score=277.27 Aligned_cols=356 Identities=16% Similarity=0.154 Sum_probs=204.0
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-cc---------------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-WE--------------------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-~~--------------------- 59 (450)
.+++|+|+||+|++|++....+ ...++||+.|++|||||||+|+|+....... .+
T Consensus 20 ~~g~V~I~dg~I~~vg~~~~~~---~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 96 (445)
T PRK07228 20 VDGDVLIEDDRIAAVGDRLDLE---DYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDA 96 (445)
T ss_pred cccEEEEECCEEEEecCCcccC---cCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCH
Confidence 5689999999999999764322 2578999999999999999999996532110 00
Q ss_pred -c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC------C-----CccchH
Q 013050 60 -G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP------E-----NAYNAS 123 (450)
Q Consensus 60 -~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~ 123 (450)
. ......+++.+|+||++++. .... ....+.... +.. ++......... . ..+.++
T Consensus 97 ~~~~~~a~~~~~e~L~~GvTtv~d~~-~~~~---~~~~~~a~~---~~g--~r~~~~~~~~~~~~~~p~~~~~~~~~~l~ 167 (445)
T PRK07228 97 ESMYYSALLGIGELIESGTTTIVDME-SVHH---TDSAFEAAG---ESG--IRAVLGKVMMDYGDDVPEGLQEDTEASLA 167 (445)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEccc-cccC---hHHHHHHHH---HcC--CeEEEecceecCCcCCCccccccHHHHHH
Confidence 0 01123466799999999985 2211 111121111 111 11111100000 0 111223
Q ss_pred HHHHHHHc--CCc--EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCcccccc
Q 013050 124 ALEALLNA--GVL--GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYST 198 (450)
Q Consensus 124 ~~~~~~~~--g~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~ 198 (450)
...++++. |.. .+...+.+ .....++++.++++++.|+++|+++.+|+.+... +.......+
T Consensus 168 ~~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g---------- 234 (445)
T PRK07228 168 ESVRLLEKWHGADNGRIRYAFTP---RFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETG---------- 234 (445)
T ss_pred HHHHHHHHhcCCCCCceEEEEeC---CCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC----------
Confidence 33333332 332 22221212 1123577899999999999999999999943222 111111000
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCC
Q 013050 199 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278 (450)
Q Consensus 199 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 278 (450)
...++...+. + ..+.++.+.|+... +.+.++.+++.|+.++. ||.....
T Consensus 235 --------------~~~~~~l~~~--g--~~~~~~~l~H~~~~--~~~~~~~~~~~g~~v~~--~P~~~~~--------- 283 (445)
T PRK07228 235 --------------MRNIHYLDEV--G--LTGEDLILAHCVWL--DEEEREILAETGTHVTH--CPSSNLK--------- 283 (445)
T ss_pred --------------CCHHHHHHHC--C--CCCCCcEEEEEecC--CHHHHHHHHHcCCeEEE--ChHHhhh---------
Confidence 0001111111 0 11456777887742 22345556667765553 6653210
Q ss_pred CceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCH
Q 013050 279 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTL 355 (450)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~ 355 (450)
.......++++++.|+.+++|||+.+.+...+++ .+..+...+.... ..++|+
T Consensus 284 ----------~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~ 339 (445)
T PRK07228 284 ----------LASGIAPVPDLLERGINVALGADGAPCNNTLDPF--------------TEMRQAALIQKVDRLGPTAMPA 339 (445)
T ss_pred ----------cccccCcHHHHHHCCCeEEEcCCCCccCCCccHH--------------HHHHHHHHHhhhccCCCcccCH
Confidence 0112335678899999999999986543211111 0111111111111 135899
Q ss_pred HHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCc---eEeeEEEEEEECCeE
Q 013050 356 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---RLSGKVLATISRGNL 431 (450)
Q Consensus 356 ~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~v~G~~ 431 (450)
+++++++|.|||+++|+ ++.|+|++|+.|||+|+|.+.+...+.+ . .+|+... ....+|..|||+|++
T Consensus 340 ~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~-------~-~~~~~~~~~~~~~~~v~~v~v~G~~ 411 (445)
T PRK07228 340 RTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSH-------G-VDVLSHLVYAAHGSDVETTMVDGKI 411 (445)
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCc-------c-cCHHHHhheeCCCCCeeEEEECCEE
Confidence 99999999999999999 7789999999999999998864332211 0 1222211 112479999999999
Q ss_pred EEecCcccCCCCCc
Q 013050 432 VYKEGNHAPAACGS 445 (450)
Q Consensus 432 v~~~g~~~~~~~g~ 445 (450)
||++|+++..+.+.
T Consensus 412 v~~~g~~~~~d~~~ 425 (445)
T PRK07228 412 VMEDGELTTIDADA 425 (445)
T ss_pred EEECCeEccCCHHH
Confidence 99999998765443
No 42
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-33 Score=264.62 Aligned_cols=328 Identities=23% Similarity=0.262 Sum_probs=190.6
Q ss_pred cceeEEEeCCEEEEeccCC-CCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCccc---------------------
Q 013050 2 CKRAVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE--------------------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~-~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~--------------------- 59 (450)
+++.|+|+||||++|++.. ..+ ++.++||++|++|+|||||+|+|+...+....+
T Consensus 27 ~~~~v~i~~GkI~~vg~~~~~~~---~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~~~~~~~~~~i~~~~~gi~ 103 (406)
T COG1228 27 EDGAVLIEDGKIVAVGPEEIDIP---AGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREAGASYTEILAAGGGIL 103 (406)
T ss_pred ecceEEEECCEEEEecCcccCCC---CCCeEEeCCCCEEccceeeccccccccCCccchhhhcccCccHHHHHHhcCChh
Confidence 4588999999999999874 332 468999999999999999999999654322110
Q ss_pred ------------c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-----ec--cccC
Q 013050 60 ------------G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-----WG--GLVP 116 (450)
Q Consensus 60 ------------~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~ 116 (450)
. .....+.+.++|+|+.-.......+.......+... ........+.+.. ++ ....
T Consensus 104 ~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~ 182 (406)
T COG1228 104 PLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAA-AGLKESRPVAVGSTPLAAHGVPEERK 182 (406)
T ss_pred hhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchh-hhccccccccccCccccccCCccccc
Confidence 0 111233556777777655421111111111111111 1111111111111 11 0111
Q ss_pred CCc-cchHH----HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050 117 ENA-YNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 191 (450)
Q Consensus 117 ~~~-~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~ 191 (450)
... ...+. +......|........ ...+..+.++++++++.|++.|+++.+|++..+.
T Consensus 183 ~~r~~~~~g~~~~i~~~a~~~l~~~~d~~-----~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g------------ 245 (406)
T COG1228 183 ATREAYVAGARLLIKIVATGGLASFVDAF-----CEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADG------------ 245 (406)
T ss_pred chHHHHHHHHHHHHHHHHhccccchhhcc-----ccccccCHHHHHHHHHHHHHCCCceEEEecccch------------
Confidence 111 11111 2222333433333211 2234678899999999999999999999965321
Q ss_pred CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccc
Q 013050 192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 271 (450)
Q Consensus 192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 271 (450)
+..++++.. ..--|..++.+ ++.+.+.+.. .|.+ .....|...+.
T Consensus 246 --------------------~~~A~~~g~---------~s~~H~~~ld~--~~~~~~a~~~-~g~~-~~~l~p~~~~~-- 290 (406)
T COG1228 246 --------------------IKLAIRLGA---------KSAEHGTLLDH--ETAALLAEKG-AGTP-VPVLLPRTKFE-- 290 (406)
T ss_pred --------------------HHHHHHhCc---------ceehhhhhcCH--hHHHHHhhcc-CCCc-cccccchhhhh--
Confidence 233333322 11122233332 3333333311 3432 12222211110
Q ss_pred cccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhc
Q 013050 272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 351 (450)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 351 (450)
. ..........+.+.|+.++++||+.|... ...+...+.++...
T Consensus 291 -----------l-----~e~~~~~~~~l~~~GV~vai~TD~~~~~~--------------------~~~l~~~m~l~~~~ 334 (406)
T COG1228 291 -----------L-----RELDYKPARKLIDAGVKVAIGTDHNPGTS--------------------HGSLALEMALAVRL 334 (406)
T ss_pred -----------h-----hcccchhHHHHHHCCCEEEEEcCCCCCch--------------------hhHHHHHHHHHHHc
Confidence 0 01122335677889999999999876542 12345555667777
Q ss_pred CCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050 352 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 430 (450)
Q Consensus 352 gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~ 430 (450)
+||++|+|+++|.|||++||+ ++.|+|++||.|||||||.|++.++... .. ..+|..||.+|+
T Consensus 335 gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y~----~~------------~~~v~~v~k~G~ 398 (406)
T COG1228 335 GMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPYF----LG------------LNKVEAVIKDGK 398 (406)
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhcccc----cc------------CCceEEEEECCE
Confidence 799999999999999999999 8899999999999999999986554111 11 137999999999
Q ss_pred EEEecCc
Q 013050 431 LVYKEGN 437 (450)
Q Consensus 431 ~v~~~g~ 437 (450)
++++.+.
T Consensus 399 ~~~~~~~ 405 (406)
T COG1228 399 VVYERGS 405 (406)
T ss_pred EeecCCC
Confidence 9998764
No 43
>PRK08204 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=265.95 Aligned_cols=351 Identities=18% Similarity=0.166 Sum_probs=203.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----------ccc------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EWE------------ 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----------~~~------------ 59 (450)
.+++|+|++|+|++|++..+. ++.+++|+.|++|+|||||+|+|+...... +..
T Consensus 22 ~~~~v~V~~g~I~~Vg~~~~~----~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (449)
T PRK08204 22 PRGDILIEGDRIAAVAPSIEA----PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTLQTYFREIHGNLGPMFRP 97 (449)
T ss_pred ccceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcHHHHHHhhcccccccCCH
Confidence 467999999999999986442 356799999999999999999998532100 000
Q ss_pred -----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC-------CCccchHHHHH
Q 013050 60 -----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-------ENAYNASALEA 127 (450)
Q Consensus 60 -----~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 127 (450)
.......+++.+|||+++++. .... .........+.+.......+...+.... ......+....
T Consensus 98 ~~~~~~a~~~~~~~L~~GvTtv~d~~-~~~~---~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (449)
T PRK08204 98 EDVYIANLLGALEALDAGVTTLLDWS-HINN---SPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRR 173 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEeecc-cccC---ChhHHHHHHHHHHHcCCeEEEEccccCCCCCCCcchhhhhHHHHHH
Confidence 011234578999999999985 2211 1112222222222111111111111100 01112222322
Q ss_pred HHH---cCCcE-EEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCC
Q 013050 128 LLN---AGVLG-LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR 203 (450)
Q Consensus 128 ~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
+.+ .++.. +...... .+...++++.+.++++.|+++|+++.+|+.+... . ..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~---------------~-----~~- 229 (449)
T PRK08204 174 VKKRYFSSDDGLLTLGLAI---RGPEFSSWEVARADFRLARELGLPISMHQGFGPW---------------G-----AT- 229 (449)
T ss_pred HHHhhccCCCCceEEEEec---CCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCc---------------c-----cC-
Confidence 222 22221 1111111 1123467888999999999999999999943211 0 00
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050 204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 283 (450)
Q Consensus 204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (450)
...++.+.+.. ..+.+..+.|+.. -+.+.++.+++.|+.++. ||...... +
T Consensus 230 -----~~~~~~l~~~g--------~~~~~~~i~H~~~--~~~~~~~~la~~g~~v~~--~P~~~~~~-------g----- 280 (449)
T PRK08204 230 -----PRGVEQLHDAG--------LLGPDLNLVHGND--LSDDELKLLADSGGSFSV--TPEIEMMM-------G----- 280 (449)
T ss_pred -----CCHHHHHHHCC--------CCCCCeEEEecCC--CCHHHHHHHHHcCCCEEE--ChHHHhhh-------c-----
Confidence 01122222211 1155667788876 334567777788876665 66532110 0
Q ss_pred cCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH--------------HH
Q 013050 284 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--------------GR 349 (450)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~ 349 (450)
.....+.++++.|+.+++|||+.+.+....+. +..+....+. ..
T Consensus 281 -------~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (449)
T PRK08204 281 -------HGYPVTGRLLAHGVRPSLGVDVVTSTGGDMFT---------------QMRFALQAERARDNAVHLREGGMPPP 338 (449)
T ss_pred -------CCCCcHHHHHhcCCceeeccccCCCCCcCHHH---------------HHHHHHHHHHhhcccccccccccCCC
Confidence 00112456688899999999965432111100 0001111110 01
Q ss_pred hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEE
Q 013050 350 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLAT 425 (450)
Q Consensus 350 ~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v 425 (450)
+.++++.++|+++|.|||+++|+ ++.|+|++||.|||||+|.+.+...+. ..|+..+++ ..+|..|
T Consensus 339 ~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~----------~dp~~~lv~~~~~~~v~~v 408 (449)
T PRK08204 339 RLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPV----------HDPVGAVVQSAHPGNVDSV 408 (449)
T ss_pred cCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCC----------cChhhhheeccCCCCceEE
Confidence 35799999999999999999999 678999999999999999886422211 223333332 2589999
Q ss_pred EECCeEEEecCcccCCCCCc
Q 013050 426 ISRGNLVYKEGNHAPAACGS 445 (450)
Q Consensus 426 ~v~G~~v~~~g~~~~~~~g~ 445 (450)
||+|++||++|++++.+..+
T Consensus 409 ~v~G~~v~~~~~~~~~d~~~ 428 (449)
T PRK08204 409 MVAGRAVKRNGKLLGVDLER 428 (449)
T ss_pred EECCEEEEECCEeccCCHHH
Confidence 99999999999999765443
No 44
>PRK13985 ureB urease subunit beta; Provisional
Probab=100.00 E-value=5.5e-32 Score=257.09 Aligned_cols=331 Identities=22% Similarity=0.296 Sum_probs=210.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCC---------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 72 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~---------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G 72 (450)
.+++|.|+||+|++|++..++..+ ..+.++||++|++|+|||||+|+|+..++. .+.+++.|
T Consensus 81 ~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~~---------~~~AlagG 151 (568)
T PRK13985 81 YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQ---------IPTAFASG 151 (568)
T ss_pred EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCccH---------HHHHhcCc
Confidence 468999999999999975332110 135789999999999999999999976542 24689999
Q ss_pred ceEEEeCCC----CCCCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050 73 ITTLIDMPL----NSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 146 (450)
Q Consensus 73 vT~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (450)
|||+++++. ++.+.. .....+....+..+. ..+++.+++.. +....+.+.++.+.|+.+++.+..
T Consensus 152 VTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~pvn~gf~gkG---~~~~l~eL~el~~aGA~GfK~~ed----- 222 (568)
T PRK13985 152 VTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLGKG---NSSNDASLADQIEAGAIGFKIHED----- 222 (568)
T ss_pred eEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cCccEEEecCC---ccCCHHHHHHHHHcCCEEEEECCc-----
Confidence 999999531 222222 223334555555443 35778877532 224467888989999999998532
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
+..++..+.++++.|++++.+|.+|++..+. ...++..+....
T Consensus 223 --~g~t~~~I~~aL~vA~~~dv~V~iHtdtlne-----------------------------~g~~E~t~aa~~------ 265 (568)
T PRK13985 223 --WGTTPSAINHALDVADKYDVQVAIHTDTLNE-----------------------------AGCVEDTMAAIA------ 265 (568)
T ss_pred --cCCCHHHHHHHHHHHHHcCCEEEEeCCCCCC-----------------------------chhhHHHHHHhc------
Confidence 2467889999999999999999999976542 112333333332
Q ss_pred CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-
Q 013050 227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK- 293 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~- 293 (450)
+..+|..|.... ....+.++-+...++..+ +.+| ..-++.+.+.. .-.+.+.+|.+.+- +-+
T Consensus 266 ---gr~iH~~H~egaggghapdi~~~~~~~nvlp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~ 340 (568)
T PRK13985 266 ---GRTMHTFHTEGAGGGHAPDIIKVAGEHNILPA-STNP-TIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRP 340 (568)
T ss_pred ---CCeEEEEeccCCCccchhhHHHHcCCCCcccC-CCCC-CCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccc
Confidence 888999999753 134455555544332111 1111 22222222211 12233444443111 101
Q ss_pred HHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH---HH------------hcCCCH
Q 013050 294 EKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY---GR------------KYGVTL 355 (450)
Q Consensus 294 ~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~------------~~gls~ 355 (450)
+-+ .-+.+.|++.+++||+...... ......+|+. .+ ...+++
T Consensus 341 ~tiaaed~l~d~G~~s~~~SDs~~mgr~-------------------ge~~~r~~q~a~k~~~~~g~l~~~~~~~dnl~v 401 (568)
T PRK13985 341 QTIAAEDTLHDMGIFSITSSDSQAMGRV-------------------GEVITRTWQTADKNKKEFGRLKEEKGDNDNFRI 401 (568)
T ss_pred cccccCchhhhCCcEEEEeccchhhCcc-------------------cceeeehHHHHHHHHHhcCCCCCccccccccCH
Confidence 001 1134469999999997532110 0001111111 11 123778
Q ss_pred HHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 356 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 356 ~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
+++|+++|.|||+++|+ +++|+|++||.|||||||.++.. .++..||++|+++|.
T Consensus 402 ~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~------------------------~~pe~vi~~G~iv~~ 457 (568)
T PRK13985 402 KRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFG------------------------VKPNMIIKGGFIALS 457 (568)
T ss_pred HHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCC------------------------CChheEEECCEEEEc
Confidence 89999999999999999 78999999999999999966410 156799999999998
Q ss_pred c
Q 013050 435 E 435 (450)
Q Consensus 435 ~ 435 (450)
.
T Consensus 458 ~ 458 (568)
T PRK13985 458 Q 458 (568)
T ss_pred c
Confidence 5
No 45
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=100.00 E-value=2e-31 Score=254.88 Aligned_cols=331 Identities=21% Similarity=0.258 Sum_probs=209.3
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|+|++|+|++|++.... ...+++|++|++|+|||||+|+|+..++.. ...+....++++|||++++++ .
T Consensus 22 ~~~i~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PGliD~H~H~~~~g~~---~~~~~~~~~l~~G~Ttv~d~g-~ 93 (379)
T PRK12394 22 INNLRIINDIIVDADKYPVA----SETRIIHADGCIVTPGLIDYHAHVFYDGTE---GGVRPDMYMPPNGVTTVVDAG-S 93 (379)
T ss_pred ccEEEEECCEEEEEcCCCCC----CCCeEEECCCCEEECCEEEeeecCCCCCcc---cccCHHHHHHhCCccEEEECC-C
Confidence 46899999999999874321 245899999999999999999999655422 233345668999999999996 3
Q ss_pred CCCCCCcHHHHHHHHHHHh---cCCceEEEEeccccCC----Cc-c--chHHHHHHHH---cCCcEEEEecccCCCCCCC
Q 013050 83 SDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPE----NA-Y--NASALEALLN---AGVLGLKSFMCPSGINDFP 149 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~ 149 (450)
.. ......+........ .+..+.+..++..... .. . ..++..++++ .++.+++.+...... .
T Consensus 94 ~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~---~ 168 (379)
T PRK12394 94 AG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDI---A 168 (379)
T ss_pred CC--cccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCcEEEEEEEEecccc---c
Confidence 32 233333333322222 2233344444322211 01 1 1345556654 356677765433210 1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050 150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 229 (450)
Q Consensus 150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (450)
..+.+.+++.++.|+++|+++.+|+.++.. ...+++.+....
T Consensus 169 ~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~-------------------------------~~~~~~~~l~~g------- 210 (379)
T PRK12394 169 EYGLKPLTETLRIANDLRCPVAVHSTHPVL-------------------------------PMKELVSLLRRG------- 210 (379)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEeCCCCc-------------------------------cHHHHHHhcCCC-------
Confidence 456889999999999999999999965431 012233333211
Q ss_pred CceEEEEecC-------ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhc
Q 013050 230 GAHLHIVHLS-------DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302 (450)
Q Consensus 230 ~~~~~~~h~~-------~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (450)
....|+.+.. +. ...+.++++++.|..+.. .++ +...+...+++++..
T Consensus 211 ~~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~-~~g-----------------------~s~~~~~~~~~~l~~ 265 (379)
T PRK12394 211 DIIAHAFHGKGSTILTEEG-AVLAEVRQARERGVIFDA-ANG-----------------------RSHFDMNVARRAIAN 265 (379)
T ss_pred CEEEecCCCCCCCcCCCCC-CChHHHHHHHhCCeEEEe-cCC-----------------------ccccchHHHHHHHHC
Confidence 2233333311 11 335677777777742211 111 111234556788899
Q ss_pred CC-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCcccc
Q 013050 303 GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAI 380 (450)
Q Consensus 303 g~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~ 380 (450)
|+ .++++||+.+.+..... ...+..+++.....+++++++++|+|.|||+++|+ ++.|+|++
T Consensus 266 G~~~~~lgTD~~~~~~~~~~----------------~~~l~~~~~~~~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~ 329 (379)
T PRK12394 266 GFLPDIISSDLSTITKLAWP----------------VYSLPWVLSKYLALGMALEDVINACTHTPAVLMGMAAEIGTLAP 329 (379)
T ss_pred CCCceEEECCCCCCCcccCc----------------cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCC
Confidence 95 88999999876522110 01234455555578999999999999999999999 47899999
Q ss_pred CCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEee----EEEEEEECCeEEEecCc
Q 013050 381 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGN 437 (450)
Q Consensus 381 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v~v~G~~v~~~g~ 437 (450)
|+.|||+++|.+.++... . + +.+....+ +|..|||+|++||++-.
T Consensus 330 G~~ADl~~~~~~~~~~~~-~-d----------~~g~~~~~~~~~~v~~t~v~G~~v~~~~~ 378 (379)
T PRK12394 330 GAFADIAIFKLKNRHVEF-A-D----------IHGETLTGTHVLVPQMTIKSGEILYRQID 378 (379)
T ss_pred CCccCEEEEecCcCccee-c-c----------CCCCEEEeeeecceEEEEECCEEEEecCC
Confidence 999999999988754421 1 1 23333333 79999999999998654
No 46
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=100.00 E-value=5.9e-32 Score=264.05 Aligned_cols=357 Identities=15% Similarity=0.079 Sum_probs=200.3
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-------ccc---------------
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-------WEG--------------- 60 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-------~~~--------------- 60 (450)
+++|.|+||+|++|++..+....++..+++|+.|++|+|||||+|+|+....+.. ...
T Consensus 21 ~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~~~~~l~~~l~~~~~~~~~~ 100 (442)
T PRK07203 21 DGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIPPPPDFISILKNLWWRLDRA 100 (442)
T ss_pred ccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccCCCCCHHHHHHhheehhhhc
Confidence 5789999999999997433221124568999999999999999999986321100 000
Q ss_pred -----h----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-cc----chHHHH
Q 013050 61 -----F----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AY----NASALE 126 (450)
Q Consensus 61 -----~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~ 126 (450)
+ .....+++++|||+++++...........+ ...+... ...++........+.+ .. .++...
T Consensus 101 ~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~---~~~~a~~-~~GiR~~~~~~~~d~~~~~~~~~~l~~~~ 176 (442)
T PRK07203 101 LTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLF---TIADAAK-KVGLRAMLCYETSDRDGEKELQEGVEENI 176 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHH---HHHHHHH-HhCCeEEEecccccCCcchhHHHHHHHHH
Confidence 0 112347799999999998411111111111 2222222 2222222211111111 11 111222
Q ss_pred HHHHc--C--CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCccccccccC
Q 013050 127 ALLNA--G--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLK 201 (450)
Q Consensus 127 ~~~~~--g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
++++. + ...+...+.+ .....++++.++++.+.|+++|+++.+|..+... ...+....+
T Consensus 177 ~~~~~~~~~~~~~v~~~~~p---~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g------------- 240 (442)
T PRK07203 177 RFIKHIDEAKDDMVEAMFGL---HASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYG------------- 240 (442)
T ss_pred HHHHHhcCCCCCceEEEEcc---CCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcC-------------
Confidence 22221 1 1123333333 2224578899999999999999999999954332 222221111
Q ss_pred CCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCce
Q 013050 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 281 (450)
Q Consensus 202 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 281 (450)
...++...+... . +.++.+.|+... +.+.++.+++.|..+.. ||......
T Consensus 241 -----------~~~v~~l~~~Gl--l--~~~~~~~H~~~~--~~~d~~~la~~g~~v~~--~P~sn~~l----------- 290 (442)
T PRK07203 241 -----------KDIVERLADFGL--L--GEKTLAAHCIYL--SDEEIDLLKETDTFVVH--NPESNMGN----------- 290 (442)
T ss_pred -----------CCHHHHHHhCCC--C--CCCcEEEEeecC--CHHHHHHHHhcCCeEEE--Cchhhhhc-----------
Confidence 001122222100 1 344555665542 22345666666765554 77532111
Q ss_pred EEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--hcCCCHHHHH
Q 013050 282 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLA 359 (450)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~gls~~~al 359 (450)
......+.++++.|+.+++|||+...+.... ..+....+... ...+++++++
T Consensus 291 --------~~g~~p~~~~~~~Gv~v~lGtD~~~~d~~~~------------------~~~a~~~~~~~~~~~~~~~~~~~ 344 (442)
T PRK07203 291 --------AVGYNPVLEMIKNGILLGLGTDGYTSDMFES------------------YKVANFKHKHAGGDPNVGWPESP 344 (442)
T ss_pred --------ccCCCCHHHHHHCCCeEEEcCCCCCccHHHH------------------HHHHHHHhccccCCCCCCHHHHH
Confidence 0112234677889999999999753322211 11111112111 1224578999
Q ss_pred HHHhhchhHHhC--C-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEE
Q 013050 360 SWWSERPAKLAG--Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVY 433 (450)
Q Consensus 360 ~~aT~~~A~~lg--~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~ 433 (450)
+|+|.|||+++| + ++.|+|++||.|||+++|.+.+...+. .+|+...++ ..+|..|||+|++||
T Consensus 345 ~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~v~~~~~~~v~~v~v~G~~v~ 414 (442)
T PRK07203 345 AMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNE----------DNINGHILFGMNGGSVDTTIVNGKVVM 414 (442)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCc----------cccccceEeecCCCceEEEEECCEEEE
Confidence 999999999999 4 568999999999999999876433321 122222222 357999999999999
Q ss_pred ecCcccCCCCCc
Q 013050 434 KEGNHAPAACGS 445 (450)
Q Consensus 434 ~~g~~~~~~~g~ 445 (450)
++|++++.+..+
T Consensus 415 ~~g~~~~~d~~~ 426 (442)
T PRK07203 415 EDRKFLNFDEES 426 (442)
T ss_pred ECCcccccCHHH
Confidence 999998766443
No 47
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=2.8e-32 Score=268.73 Aligned_cols=358 Identities=17% Similarity=0.131 Sum_probs=201.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC-------CCC------ccc---------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP-------GRT------EWE--------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~-------~~~------~~~--------- 59 (450)
.+++|+|+||+|++|++.... +..++||+.|++|||||||+|+|+... ... .|.
T Consensus 22 ~~~~VlVe~g~I~~Vg~~~~~----~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (488)
T PRK06151 22 RDGEVVFEGDRILFVGHRFDG----EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPGWAKGRVWSRDYVEAGRR 97 (488)
T ss_pred eCcEEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchhHHhcccCchhhhhcchh
Confidence 467899999999999985321 245799999999999999999996420 000 010
Q ss_pred ------c----hHHHHHHHHhCCceEEEeCCCCCCCC-CCcHHHHHHHHHHHhcCCceEEEEecccc------C------
Q 013050 60 ------G----FPSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKVDAAEKRIYVDVGFWGGLV------P------ 116 (450)
Q Consensus 60 ------~----~~~~~~~~~~~GvT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------ 116 (450)
. ......+++++|||+++++....... ..+...+....+..... .++........ .
T Consensus 98 ~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~-GiR~~~~~~~~~~~~~~~~~g~~~ 176 (488)
T PRK06151 98 EMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRL-GLRVYLGPAYRSGGSVLEADGSLE 176 (488)
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHc-CCeEEecchhccCccccccCCCCC
Confidence 0 01234588999999999874111110 11111222222222211 11111110000 0
Q ss_pred ---C---Ccc----chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhh
Q 013050 117 ---E---NAY----NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVK 185 (450)
Q Consensus 117 ---~---~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~ 185 (450)
. ..+ ..+.++++...|...++....+. ....++.+.+.++++.|+++|+++.+|+.+.. .+.....
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~ 253 (488)
T PRK06151 177 VVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPD---RIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRR 253 (488)
T ss_pred ccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCC---CCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHH
Confidence 0 001 11222333334555555544332 22357899999999999999999999994322 1111110
Q ss_pred hccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-------HHHHHHHHHhCCCcE
Q 013050 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-------SLDLLMEAKTNGDSI 258 (450)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~g~~v 258 (450)
..+ ...++...+. + ..+.++.+.|+....+ ..+.++.+++.|+.+
T Consensus 254 ~~g------------------------~~~~~~~~~~--g--~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v 305 (488)
T PRK06151 254 LHG------------------------TTPLEWLADV--G--LLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVSI 305 (488)
T ss_pred HcC------------------------CCHHHHHHHc--C--CCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCEE
Confidence 000 0011222221 0 0133445555543201 126777888888755
Q ss_pred EEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchh
Q 013050 259 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 338 (450)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~ 338 (450)
.. ||..... .+ .....+.++++.|+.+++|||..+.+....+
T Consensus 306 ~~--~P~~~~~-------~g------------~~~~p~~~l~~~Gv~v~lGtD~~~~~~~~~~----------------- 347 (488)
T PRK06151 306 VH--CPLVSAR-------HG------------SALNSFDRYREAGINLALGTDTFPPDMVMNM----------------- 347 (488)
T ss_pred EE--Cchhhhh-------hc------------cccccHHHHHHCCCcEEEECCCCCccHHHHH-----------------
Confidence 54 6532110 00 1122356678899999999997543222111
Q ss_pred hHHHHHHHHHHh---cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCC
Q 013050 339 FVLPVTWSYGRK---YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415 (450)
Q Consensus 339 ~~~~~~~~~~~~---~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (450)
........... ..++++++++++|.|||+++|+++.|+|++|+.|||+|+|.+.....+ . ++|+..
T Consensus 348 -~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvvld~~~~~~~~-~---------~d~~~~ 416 (488)
T PRK06151 348 -RVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDDLGRLAPGAKADIVVFDLDGLHMGP-V---------FDPIRT 416 (488)
T ss_pred -HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCcCCEEEEeCCccccCC-c---------cCHHHH
Confidence 01111111221 248999999999999999999944899999999999999977532111 1 223332
Q ss_pred ceEe---eEEEEEEECCeEEEecCcccCCCCC
Q 013050 416 RRLS---GKVLATISRGNLVYKEGNHAPAACG 444 (450)
Q Consensus 416 ~~~~---~~v~~v~v~G~~v~~~g~~~~~~~g 444 (450)
.++. .+|..|||+|++||++|+++..+..
T Consensus 417 lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~ 448 (488)
T PRK06151 417 LVTGGSGRDVRAVFVDGRVVMEDGRLPGVDLA 448 (488)
T ss_pred HHhhCCCCCccEEEECCEEEEECCeecCCCHH
Confidence 2221 3799999999999999999866543
No 48
>PRK09228 guanine deaminase; Provisional
Probab=100.00 E-value=1e-31 Score=260.50 Aligned_cols=358 Identities=18% Similarity=0.148 Sum_probs=197.9
Q ss_pred CcceeEEEeCCEEEEeccCCCCCCCCC-CCcEEecCCCEEeccceeeccccCCCCCCc--------c--------c----
Q 013050 1 MCKRAVEIKEGNIISIVSEEDWPRNSK-TGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------W--------E---- 59 (450)
Q Consensus 1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~~-~~~viD~~g~~v~PG~iD~H~H~~~~~~~~--------~--------~---- 59 (450)
+.+++|+|+||+|++|++..+.....+ +.++||+.|++|+|||||+|+|+....... | +
T Consensus 29 ~~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~ 108 (433)
T PRK09228 29 IEDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFA 108 (433)
T ss_pred ECCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhC
Confidence 357899999999999998644321122 368999999999999999999986432110 0 0
Q ss_pred ---chH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc----C-C----CccchH
Q 013050 60 ---GFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV----P-E----NAYNAS 123 (450)
Q Consensus 60 ---~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~----~~~~~~ 123 (450)
... ....+++.+|||+++++. ... ........+.... ..++........ . . .....+
T Consensus 109 ~~~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~-----~~~~~~~~~a~~~-~GiR~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (433)
T PRK09228 109 DPAYAREVAEFFLDELLRNGTTTALVFG-TVH-----PQSVDALFEAAEA-RNMRMIAGKVLMDRNAPDGLRDTAESGYD 181 (433)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEecc-ccC-----HHHHHHHHHHHHH-cCCeEEeeeeeecCCCCcccccCHHHHHH
Confidence 001 113467999999999985 221 1122222222221 222222111111 0 0 011122
Q ss_pred HHHHHHHc--CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCChh-hhhhhhhhccCcCCccccccc
Q 013050 124 ALEALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTY 199 (450)
Q Consensus 124 ~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~ 199 (450)
...++++. +...+...+.+ ...+.++++.++++.+.|+++ ++++.+|..+.. .........+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~p---~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g----------- 247 (433)
T PRK09228 182 DSKALIERWHGKGRLLYAITP---RFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFP----------- 247 (433)
T ss_pred HHHHHHHHHhCCCCceEEEEC---CcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcC-----------
Confidence 22222221 11122222222 112367889999999999998 999999995432 2111111110
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050 200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 279 (450)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 279 (450)
..+ ...+..++.. .-+.++.+.|+... +.+.++.+++.|+.+.. ||.....- +
T Consensus 248 --~~~---------~~~~~l~~~G----~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~sn~~l-------g- 300 (433)
T PRK09228 248 --EAR---------DYLDVYERYG----LLGPRAVFAHCIHL--EDRERRRLAETGAAIAF--CPTSNLFL-------G- 300 (433)
T ss_pred --CCC---------CHHHHHHHcC----CCCCCeEEEeccCC--CHHHHHHHHHcCCeEEE--CCccHHhh-------c-
Confidence 000 0122222210 01446777787763 33456667777765544 66532110 0
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhh-HHHHHHHHHHhcCCCHHHH
Q 013050 280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSYGRKYGVTLEQL 358 (450)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~gls~~~a 358 (450)
.....+.++++.|+.+++|||....+. .++ ... .+..........+++++++
T Consensus 301 -----------~g~~~~~~~~~~Gv~v~lGtD~~~~~~-~d~---------------~~~~~~~~~~~~~~~~~~~~~~~ 353 (433)
T PRK09228 301 -----------SGLFDLKRADAAGVRVGLGTDVGGGTS-FSM---------------LQTMNEAYKVQQLQGYRLSPFQA 353 (433)
T ss_pred -----------CCCcCHHHHHHCCCeEEEecCCCCCCC-CCH---------------HHHHHHHHHHhhcccCCCCHHHH
Confidence 011234567888999999999643211 111 111 1111122223456899999
Q ss_pred HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEe
Q 013050 359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYK 434 (450)
Q Consensus 359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~ 434 (450)
|+|+|.|||+++|+ +++|+|++||+||||++|.+..+....... ..... ..|+...++ ..+|+.|||+|++|++
T Consensus 354 l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~-~~~~~-~d~~~~lv~~~~~~~V~~v~VdG~~v~~ 431 (433)
T PRK09228 354 FYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTA-RAESL-EELLFALMTLGDDRAVAETYVAGRPVYR 431 (433)
T ss_pred HHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEcCCCCccccchhc-ccCCH-HHHHHHHhhcCCccceeEEEECCEEecc
Confidence 99999999999999 568999999999999999875332110000 00000 123322332 3579999999999987
Q ss_pred c
Q 013050 435 E 435 (450)
Q Consensus 435 ~ 435 (450)
+
T Consensus 432 ~ 432 (433)
T PRK09228 432 R 432 (433)
T ss_pred C
Confidence 5
No 49
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=5.3e-31 Score=251.53 Aligned_cols=330 Identities=22% Similarity=0.250 Sum_probs=214.6
Q ss_pred cceeEEEeCCEEEEeccCCCCCC---------CCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 72 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~---------~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G 72 (450)
++++|.|+||||++|++..++.. ..++.++||++|++|+|||||+|+|+..++. .+.++..|
T Consensus 85 ~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~Pg~---------~~aALagG 155 (569)
T PRK13308 85 VKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSAQL---------VDHALASG 155 (569)
T ss_pred EEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCccH---------HHHHHcCC
Confidence 46899999999999997542210 0135689999999999999999999976542 37889999
Q ss_pred ceEEEeCCCCC--CCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCC
Q 013050 73 ITTLIDMPLNS--DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 150 (450)
Q Consensus 73 vT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 150 (450)
|||+++++... .+.......+..+.+..+. .++++++++... ....+.+.++++.|+.++|.+..+ .
T Consensus 156 VTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~---~s~~aeL~eli~aGA~GfKi~ed~-------g 224 (569)
T PRK13308 156 ITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGN---SSKPAALIEQVEAGACGLKIHEDW-------G 224 (569)
T ss_pred CcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCc---ccCHHHHHHHHHCCCCEEeecCCC-------C
Confidence 99999864111 1235666777777666654 468888876432 234678889999999999986433 3
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
.+.+.+.++++.|++++++|.+|++..+. ...++..++... |
T Consensus 225 ~t~~~i~~aL~~A~~~dv~VaiHadtlne-----------------------------~g~~E~t~~a~~---------g 266 (569)
T PRK13308 225 AMPAAIDTCLEVADEYDFQVQLHTDTLNE-----------------------------SGFVEDTLAAIG---------G 266 (569)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCcCc-----------------------------chHHHHHHHHhc---------C
Confidence 57789999999999999999999976432 122344333333 8
Q ss_pred ceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-HHH-
Q 013050 231 AHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-EKL- 296 (450)
Q Consensus 231 ~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-~~l- 296 (450)
..+|+.|.... -...+.++.+...++..+ +.+| ..-++.+.+.. .-.+.+.+|.+.+- +-+ +-+
T Consensus 267 r~iH~~H~egaggghapd~l~~~~~~n~lp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~ 344 (569)
T PRK13308 267 RTIHMYHTEGAGGGHAPDIIRVVGEPHCLPS-STNP-TNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIA 344 (569)
T ss_pred CeEEEEeccCCccCchhHHHHHhCCCCccCC-CCCC-CCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhccceeec
Confidence 88999999753 133455555544332111 1111 12222222211 12233444443211 000 000
Q ss_pred --HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-----cCCCHHH-----------H
Q 013050 297 --WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-----YGVTLEQ-----------L 358 (450)
Q Consensus 297 --~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~gls~~~-----------a 358 (450)
.-+.+.|+..+++||+... ..+-......|+.+.+ ..|+.++ .
T Consensus 345 ae~~l~d~g~~s~~~sds~~m-------------------gr~~e~i~r~~q~a~~~~~~~g~l~~~~~~~~dn~rv~r~ 405 (569)
T PRK13308 345 AEDVLHDIGAISMLGSDSQGM-------------------GRIAEVIARTWQLASKMKDQRGPLPEDRGTFADNARIKRY 405 (569)
T ss_pred cCchhhcCCcEEEEecchHHH-------------------hHHHHHHHHHHHHHHHHhhcCCCCCcccccCCchhhhhHH
Confidence 1134468999999997532 1222223334443321 2366554 7
Q ss_pred HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
++++|.|||+++|+ +.+|+|++||.||||+|+.+.. . .++..||++|+++|.
T Consensus 406 L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~f----------g--------------v~p~~ti~~G~iv~~ 458 (569)
T PRK13308 406 IAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFF----------G--------------IKPELVIKGGFPAWA 458 (569)
T ss_pred HHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCccc----------C--------------CCeeEEEECCEEEEe
Confidence 99999999999999 6799999999999999995520 0 156789999999986
No 50
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=100.00 E-value=1.9e-31 Score=259.45 Aligned_cols=364 Identities=16% Similarity=0.109 Sum_probs=203.2
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----------cc-------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EW------------- 58 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----------~~------------- 58 (450)
.+++|.|++|+|++|++..+.....++.+++|+.|++|+|||||+|+|+...... .+
T Consensus 19 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~~~~~~~~~l~~~~~~~~~ 98 (441)
T TIGR03314 19 EGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIPPPPDFISILKNLWWRLDR 98 (441)
T ss_pred eccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCCCCCCHHHHHHHHHHHhhh
Confidence 3578999999999999864332222456789999999999999999999542110 00
Q ss_pred ----cch----HHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHH
Q 013050 59 ----EGF----PSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEAL 128 (450)
Q Consensus 59 ----~~~----~~~~~~~~~~GvT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 128 (450)
++. .....+++++|||+++++. .... .....+.+.........+..+.+....... ....+.++...++
T Consensus 99 ~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~-~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (441)
T TIGR03314 99 ALTLEDVYYSGLICSLDAIKSGCTTVIDHH-ASPNAITGSLSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGVEENIAF 177 (441)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCeEEEecc-cccccccchHHHHHHHHHHhCCeEEEeeeeecCCCcccHHHHHHHHHHH
Confidence 000 1123367899999999984 2111 111122222222222122222222221100 0001112222222
Q ss_pred HH--cC--CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCC
Q 013050 129 LN--AG--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTR 203 (450)
Q Consensus 129 ~~--~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
.+ .+ ...+...+.+. ....++++.++++.+.|+++++++.+|+.+. .....+....+ .
T Consensus 178 ~~~~~~~~~~~i~~~~~p~---~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g--------------~ 240 (441)
T TIGR03314 178 IKKSSGKEPYLVEAHIGAH---APFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYG--------------K 240 (441)
T ss_pred HHHhccCCCCceEEEEecC---CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcC--------------C
Confidence 22 11 11233333332 2246789999999999999999999999443 22222222211 0
Q ss_pred ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050 204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 283 (450)
Q Consensus 204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (450)
..++.+.++.- -+.++.+.|+.. -+.+.++.+++.|..+.. ||.......
T Consensus 241 ------~~~~~l~~~G~--------l~~~~~~~H~~~--~~~~d~~~la~~g~~v~~--cP~sn~~l~------------ 290 (441)
T TIGR03314 241 ------DIVERLADFGL--------LGSKTLAAHCIY--LSDREIELLNETDTFVVH--NPESNMGNA------------ 290 (441)
T ss_pred ------CHHHHHHHCCC--------CCCCeEEEEEec--CCHHHHHHHHHcCCcEEE--CHHHHhhhc------------
Confidence 01222222211 134455555554 222356666667765554 775432110
Q ss_pred cCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--hcCCCHHHHHHH
Q 013050 284 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLASW 361 (450)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~gls~~~al~~ 361 (450)
.....+.++++.|+.+++|||+.+.+....+ .+...++... +....+.++++|
T Consensus 291 -------~G~~p~~~~~~~Gv~v~LGtD~~~~d~~~em------------------~~a~~~~~~~~~~~~~~~~~~~~~ 345 (441)
T TIGR03314 291 -------VGYNPVLRMFKNGILLGLGTDGYTSDMFESL------------------KFANFKHKDAGGDLNAAWPESPAM 345 (441)
T ss_pred -------cCCCCHHHHHHCCCEEEEcCCCCCcCHHHHH------------------HHHHHHhccccCCCCccHHHHHHH
Confidence 0111245668899999999997543322211 1111111111 112245789999
Q ss_pred HhhchhHHhC--C-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcc
Q 013050 362 WSERPAKLAG--Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 438 (450)
Q Consensus 362 aT~~~A~~lg--~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~ 438 (450)
+|.|+|++++ + .+.|+|++||.|||+++|.+.++..+.. ++.. .++... ..++|..|||+|++||++|++
T Consensus 346 aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~-~~~~-----~lv~~~-~~~~V~~v~V~G~~v~~~~~~ 418 (441)
T TIGR03314 346 LFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTAD-NING-----HILFGM-NGGSVDSTMVNGKVVMEDREF 418 (441)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechh-hccc-----cceecC-CCCeeEEEEECCEEEEECCcc
Confidence 9999999997 3 4689999999999999998876554332 2111 112111 146899999999999999999
Q ss_pred cCCCCCc
Q 013050 439 APAACGS 445 (450)
Q Consensus 439 ~~~~~g~ 445 (450)
+..+..+
T Consensus 419 ~~~d~~~ 425 (441)
T TIGR03314 419 LHFDEAP 425 (441)
T ss_pred cccCHHH
Confidence 8765443
No 51
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=100.00 E-value=5e-30 Score=242.36 Aligned_cols=348 Identities=21% Similarity=0.235 Sum_probs=211.6
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCc-EEecCCCEEeccceeeccccCCCCCC-c--ccchHHHHHHHHhCCceEEEe
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQ-VVDYGEAVIMPGLIDVHAHLDDPGRT-E--WEGFPSGTKAAAAGGITTLID 78 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~-viD~~g~~v~PG~iD~H~H~~~~~~~-~--~~~~~~~~~~~~~~GvT~~~~ 78 (450)
.++|+|+||||++|++..+....+...+ ++|++|++|+|||||+|+|+...+.. . .........+++++||||+++
T Consensus 17 ~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d 96 (389)
T TIGR01975 17 KKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVG 96 (389)
T ss_pred ceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEec
Confidence 4689999999999998765432122344 55669999999999999998653111 1 122334677889999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc----CCCccchHHHHHHHHcCCcEEE-EecccCCCCCCCCCCH
Q 013050 79 MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV----PENAYNASALEALLNAGVLGLK-SFMCPSGINDFPMTNA 153 (450)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 153 (450)
+. ++.......+.+....+.+.......+...+... .-+......+.. ..-+.|++ .-+.. +.....+.
T Consensus 97 ~~-g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~--~d~iiG~~~ia~sd---~r~~~~~~ 170 (389)
T TIGR01975 97 LL-GTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL--IDKVIGVGEIAISD---HRSAQPTV 170 (389)
T ss_pred Cc-ccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee--ehhhcccceEEEcc---CcCCCCCH
Confidence 85 5555555555444444444433222232222211 011111111111 22334443 22211 12235788
Q ss_pred HHHHHHHHHHHhcC----Cc--EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050 154 SHIKEGLSVLARYK----RP--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 227 (450)
Q Consensus 154 ~~l~~~~~~a~~~g----~~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 227 (450)
++++++.+.++..| ++ +++|..+.. ..++.+.++.++.
T Consensus 171 ~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~-------------------------------~~l~~l~~~~~~~----- 214 (389)
T TIGR01975 171 EHLTNMAAEARVGGLLGGKPGIVNFHVGDSK-------------------------------RALQPIYELVENT----- 214 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEeCCch-------------------------------hhHHHHHHHHHhc-----
Confidence 99999999999998 99 999995432 2467788888765
Q ss_pred CCCceEEEEe---cCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC
Q 013050 228 AEGAHLHIVH---LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304 (450)
Q Consensus 228 ~~~~~~~~~h---~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 304 (450)
+++.|+.+ +.....-.+...++.++|..+-+........+ .. ......+.+..+++.|+
T Consensus 215 --di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l-------------~~---~~~~~~~~~~~~~~~Gv 276 (389)
T TIGR01975 215 --DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFR-------------KE---GEVAPAEGIKKALEAGV 276 (389)
T ss_pred --CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccch-------------hc---cccChHHHHHHHHHcCC
Confidence 66666544 43222344444444444433332211000000 00 11223445677888998
Q ss_pred e---eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 013050 305 I---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 381 (450)
Q Consensus 305 ~---~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G 381 (450)
. ++++||...+.+.... .+.+. ..|..+....+..+.......++|++++++++|.|||++||+++.|+|++|
T Consensus 277 ~~~~i~isSD~~gs~p~~~~--~g~~~--~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~~~G~I~~G 352 (389)
T TIGR01975 277 PLEKVTFSSDGNGSQPFFDE--NGELT--GLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLTGKGEISPG 352 (389)
T ss_pred CcceEEEEeCCCCCCCcccc--ccccc--cCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCeECCC
Confidence 6 4899997532222111 11111 224445444444443334555699999999999999999999668999999
Q ss_pred CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 441 (450)
Q Consensus 382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 441 (450)
+.|||+++|.+. ++..||.+|++++++|+++.+
T Consensus 353 ~~ADlvild~~~---------------------------~i~~v~~~G~~v~~~g~~~~~ 385 (389)
T TIGR01975 353 NDADLVVLDPDL---------------------------RIHSVIARGKLMVKDGKACVK 385 (389)
T ss_pred CcCCEEEEcCCC---------------------------CEEEEEECCEEEEECCEEEec
Confidence 999999999551 578999999999999998855
No 52
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=100.00 E-value=1e-30 Score=249.46 Aligned_cols=335 Identities=24% Similarity=0.308 Sum_probs=215.3
Q ss_pred cceeEEEeCCEEEEeccCCCCCC---------CCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 72 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~---------~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G 72 (450)
.+++|.|+||+|++|++..+... ...+.++||++|++|+|||||+|+|+..++. .+.+++.|
T Consensus 81 ~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~~---------~~aAlagG 151 (567)
T cd00375 81 YKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQQ---------IEEALASG 151 (567)
T ss_pred EEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCccH---------HHHHHcCC
Confidence 46799999999999997532210 0135689999999999999999999876542 47889999
Q ss_pred ceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050 73 ITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 146 (450)
Q Consensus 73 vT~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (450)
|||+++++. +..+.......+....+... ..++++.+++.. +....+.+.++.+.|+.+++.+..+
T Consensus 152 VTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~-~~pin~g~~gkg---~~~~l~eL~e~~~aGA~GfK~~eD~---- 223 (567)
T cd00375 152 ITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAAD-GLPVNIGFLGKG---NGSSPDALAEQIEAGACGLKLHEDW---- 223 (567)
T ss_pred CcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhh-cCCceEEEEecC---ccccHHHHHHHHHcCCEEEEecCCC----
Confidence 999999731 22344555677777776666 346888887532 2345678888899999999986433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
..++..+.++++.|++++.++.+|++..+. ...++..+....
T Consensus 224 ---g~t~~~i~~aL~~A~~~dv~VaiHadtlne-----------------------------~g~~E~t~aa~~------ 265 (567)
T cd00375 224 ---GATPAAIDTCLSVADEYDVQVAIHTDTLNE-----------------------------SGFVEDTIAAIK------ 265 (567)
T ss_pred ---CCCHHHHHHHHHHHHhhCCEEEEECCCCCc-----------------------------chHHHHHHHHhc------
Confidence 358889999999999999999999976442 112333333322
Q ss_pred CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-
Q 013050 227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK- 293 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~- 293 (450)
|..+|..|.... ....+.++.+...++..+ +.+| ..-++.+.+.. .-.+.+.+|.+.+- +-+
T Consensus 266 ---gr~iH~~H~egaggghapdi~~~~~~~nvlp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~ 340 (567)
T cd00375 266 ---GRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPS-STNP-TRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRA 340 (567)
T ss_pred ---CCeEEEEecCCCCcccchHHHHhcCCCCcccC-CCCC-CCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccc
Confidence 889999999753 133455555543332111 1111 22222222211 12233444443111 111
Q ss_pred HHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH---H-HhcC--------CCH---
Q 013050 294 EKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY---G-RKYG--------VTL--- 355 (450)
Q Consensus 294 ~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~-~~~g--------ls~--- 355 (450)
+-+ .-+.+.|+..+++||+...-.. .......|+. . +..| .+.
T Consensus 341 ~ti~ae~~l~d~G~~s~~~sDs~~mgr~-------------------ge~~~r~~q~a~k~~~~~g~~~~~~~~~~n~r~ 401 (567)
T cd00375 341 ETIAAEDVLHDLGAISIMSSDSQAMGRV-------------------GEVILRTWQTAHKMKAQRGPLPEDSGDADNFRV 401 (567)
T ss_pred hhhccchhhhccCcEEEEccchhhcCcc-------------------ceeeechHHHHHHHHHhcCCCCcccccCchHHH
Confidence 111 1134469999999997532110 0001111111 1 1123 333
Q ss_pred HHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 356 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 356 ~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
.+.|+++|.|||+++|+ +++|+|++||.||||||+.+.. ..++..||++|+++|.
T Consensus 402 ~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f------------------------~~~p~~vi~~G~iv~~ 457 (567)
T cd00375 402 KRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFF------------------------GVKPEMVLKGGFIAYA 457 (567)
T ss_pred HHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCccc------------------------CCCeeEEEECCEEEEe
Confidence 44599999999999999 7899999999999999996531 0256799999999999
Q ss_pred c-Cccc
Q 013050 435 E-GNHA 439 (450)
Q Consensus 435 ~-g~~~ 439 (450)
. |.+.
T Consensus 458 ~~gd~n 463 (567)
T cd00375 458 QMGDPN 463 (567)
T ss_pred cCCCcc
Confidence 7 6544
No 53
>PRK12393 amidohydrolase; Provisional
Probab=100.00 E-value=6.6e-31 Score=256.85 Aligned_cols=362 Identities=16% Similarity=0.143 Sum_probs=201.0
Q ss_pred eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-----------cc--------------
Q 013050 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----------EW-------------- 58 (450)
Q Consensus 4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-----------~~-------------- 58 (450)
++|+|++|+|++|++.. . .++.++||+.|++|+|||||+|+|+....+. .|
T Consensus 26 ~~v~I~~g~I~~Vg~~~-~---~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~~~~~~~~wl~~~~~~~~~~~~~ 101 (457)
T PRK12393 26 PDIRIRDGRIAAIGALT-P---LPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAGINQSLTAWLAAVPYRFRARFDE 101 (457)
T ss_pred ceEEEECCEEEEEeccC-C---CCCCeEEeCCCCEEecCEeecccCcccccccccccccCCchHHHhhhCcchhhhhCCH
Confidence 38999999999999832 1 2467899999999999999999999753111 00
Q ss_pred cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-eccc----------cC-CCc---
Q 013050 59 EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-WGGL----------VP-ENA--- 119 (450)
Q Consensus 59 ~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~-~~~--- 119 (450)
+. ......+++.+|||+++|+. ................+..... .++... .+.. .. ...
T Consensus 102 ~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~a~~~~-G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (457)
T PRK12393 102 DLFRLAARIGLVELLRSGCTTVADHH-YLYHPGMPFDTGDILFDEAEAL-GMRFVLCRGGATQTRGDHPGLPTALRPETL 179 (457)
T ss_pred HHHHHHHHHHHHHHHhCCccEeecch-hhcccccccchHHHHHHHHHHc-CCeEEEEccccccccccCCCCCCcccccCH
Confidence 00 12234477899999999984 1111111122222222222221 222211 1100 00 001
Q ss_pred -cchHHHHHHHHc---CC-c-EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCC
Q 013050 120 -YNASALEALLNA---GV-L-GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLD 192 (450)
Q Consensus 120 -~~~~~~~~~~~~---g~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~ 192 (450)
+.++....+.+. +. . .+...+.+.. ....++++.+.++++.|+++|+++.+|+.+.. .++......+
T Consensus 180 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g---- 253 (457)
T PRK12393 180 DQMLADVERLVSRYHDASPDSLRRVVVAPTT--PTFSLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYG---- 253 (457)
T ss_pred HHHHHHHHHHHHHhcCCCcCCceEEEEcCCC--CCCCcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhC----
Confidence 112223333321 11 0 1222222211 11357889999999999999999999995322 1111111100
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050 193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 272 (450)
Q Consensus 193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 272 (450)
.. .++.+ ..... -+.++.+.|+.. -+.+.++.+++.|+.+.. ||......
T Consensus 254 ---------~~-------~~~~l----~~~g~----l~~~~~~~H~~~--l~~~d~~~la~~g~~v~~--~P~sn~~l-- 303 (457)
T PRK12393 254 ---------MT-------PVQFV----AEHDW----LGPDVWFAHLVK--LDAEEIALLAQTGTGIAH--CPQSNGRL-- 303 (457)
T ss_pred ---------CC-------HHHHH----HHcCC----CCCCeEEEEEec--CCHHHHHHHHHcCCeEEE--Cchhhhhh--
Confidence 00 01111 11100 133454555554 223356666667765554 77432111
Q ss_pred ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH--H
Q 013050 273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG--R 349 (450)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~--~ 349 (450)
+ .....+.++++.|+.+++|||+.+.+...+++ ..+ +....+.. .
T Consensus 304 -----g------------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~---------------~~~~~a~~~~~~~~~ 351 (457)
T PRK12393 304 -----G------------SGIAPALAMEAAGVPVSLGVDGAASNESADML---------------SEAHAAWLLHRAEGG 351 (457)
T ss_pred -----c------------ccCCCHHHHHHCCCeEEEecCCcccCCCccHH---------------HHHHHHHHHhhhcCC
Confidence 0 01123456788999999999975432211111 111 11111111 1
Q ss_pred hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 429 (450)
Q Consensus 350 ~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 429 (450)
...++++++++++|.|||+++|+++.|+|++|+.|||+|+|.+.+...+.. +.. .+++.. ....+|..|||+|
T Consensus 352 ~~~~~~~~~l~~~T~~~A~~l~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~-----~~~~~~-~~~~~v~~v~v~G 424 (457)
T PRK12393 352 ADATTVEDVVHWGTAGGARVLGLDAIGTLAVGQAADLAIYDLDDPRFFGLH-DPA-----IAPVAC-GGPAPVKALLVNG 424 (457)
T ss_pred CCCCCHHHHHHHHhHHHHHHhCCCCCCCcCCCCcCCEEEEeCCCcccCCCC-Cch-----hhhhcc-CCCCCeeEEEECC
Confidence 124899999999999999999995489999999999999998875443322 110 111111 1135799999999
Q ss_pred eEEEecCcccCCCCCcc
Q 013050 430 NLVYKEGNHAPAACGSP 446 (450)
Q Consensus 430 ~~v~~~g~~~~~~~g~~ 446 (450)
+++|++|+++..+.+..
T Consensus 425 ~~v~~~~~~~~~d~~~i 441 (457)
T PRK12393 425 RPVVENGAIPGLDLAEL 441 (457)
T ss_pred EEEEECCccCCCCHHHH
Confidence 99999999987665544
No 54
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=1.4e-30 Score=251.43 Aligned_cols=340 Identities=21% Similarity=0.217 Sum_probs=216.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCC---------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 72 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~---------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G 72 (450)
++++|.|+||+|++|++...+... ..+.++||++|++|+|||||+|+|+..+++ .+.++..|
T Consensus 85 ~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~~---------~~aAl~gG 155 (572)
T PRK13309 85 IKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQQ---------AYHALSNG 155 (572)
T ss_pred EEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcch---------HHHHHcCc
Confidence 468999999999999975432100 124689999999999999999999887652 26789999
Q ss_pred ceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050 73 ITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 146 (450)
Q Consensus 73 vT~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (450)
|||+++++. +..+.......+..+.+... ..++++.+++.. +....+.+.++.+.|+.+++.+..+
T Consensus 156 VTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~-~~pvn~g~~gkg---~~~~~~~l~el~~aGa~gfk~~~d~---- 227 (572)
T PRK13309 156 VTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIE-GLPVNVGILGKG---NSYGRGPLLEQAIAGVAGYKVHEDW---- 227 (572)
T ss_pred eEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhc-cCCcCEEEEcCC---CCCCHHHHHHHHhcCcEEEEecCcC----
Confidence 999997531 22233444556666666665 346788877532 2233467778889999999986433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
..+.+.+.++++.|++++.++.+|++..+. ...++.. ++.
T Consensus 228 ---g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE-----------------------------~g~vE~~--~aa------ 267 (572)
T PRK13309 228 ---GATAAALRHALRVADEVDIQVAVHTDSLNE-----------------------------CGYVEDT--IDA------ 267 (572)
T ss_pred ---CcCHHHHHHHHHHHHhcCCEEEEeCCcccc-----------------------------chhHHHH--HHH------
Confidence 358889999999999999999999966432 1123333 222
Q ss_pred CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEE--EecCcchhcccccccCCCCCceEEcCCCCCh----------hh
Q 013050 227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSIT--VETCPHYLAFSAEEIPDGDTRFKCAPPIRDA----------AN 292 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 292 (450)
..+.++|..|.... ....+.++-+...++..+ ....|+..-.-.+.+...-.+.+.++.+.+- ..
T Consensus 268 -~~grpih~~H~~Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e~ 346 (572)
T PRK13309 268 -FEGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAFAESRVRPET 346 (572)
T ss_pred -hCCCceeeeeccCcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhHHHHhhCchh
Confidence 22788998888643 134455555443332111 1112221111111122222344445443211 11
Q ss_pred HHHHHHHHhcCCeeEEcCCCCCCC--hhhhcccCCCccccCCCCcchhhHHHHHHHH----------HHhcCCCHHHHHH
Q 013050 293 KEKLWEALMDGHIDMLSSDHSPTV--PELKLLDEGNFLKAWGGISSLQFVLPVTWSY----------GRKYGVTLEQLAS 360 (450)
Q Consensus 293 ~~~l~~~~~~g~~~~~gtD~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~gls~~~al~ 360 (450)
..+...+++.|+.++++||+.... .... ........... .....++..++|+
T Consensus 347 ~~a~~~l~daGa~~~~gSD~pv~gr~~~~p----------------~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~ 410 (572)
T PRK13309 347 IAAENVLHDMGVISMFSSDSQAMGRVGENW----------------LRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVA 410 (572)
T ss_pred hcchhHHHhCCCEEEEcCCCCcccCCcccH----------------HHHHHHHHHHHhccCCCCccCCCcccccHHHHHH
Confidence 123355777899999999964210 0000 00000000000 0123478899999
Q ss_pred HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-Ccc
Q 013050 361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNH 438 (450)
Q Consensus 361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~ 438 (450)
++|.|||+++|+ +++|+|++||+|||+|||.+.. . .++..||++|++||.. |.+
T Consensus 411 ~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f----------~--------------~~~~~vi~~G~iv~~~~gd~ 466 (572)
T PRK13309 411 KITINPAITQGVSHVIGSVEVGKMADLVLWEPRFF----------G--------------AKPKMVIKGGMINWAAMGDP 466 (572)
T ss_pred HHhHHHHHHcCcccCccccCCCCcCCEEEEchhhc----------C--------------CCccEEEECCEEEEecCCCc
Confidence 999999999999 7899999999999999995531 0 2568999999999988 665
Q ss_pred c
Q 013050 439 A 439 (450)
Q Consensus 439 ~ 439 (450)
.
T Consensus 467 ~ 467 (572)
T PRK13309 467 N 467 (572)
T ss_pred c
Confidence 4
No 55
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=100.00 E-value=7.8e-31 Score=254.58 Aligned_cols=349 Identities=16% Similarity=0.126 Sum_probs=195.5
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc--------------c
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------------E 59 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~--------------~ 59 (450)
+++|.|+||+|++|++.... +..+++|+.|++|+|||||+|+|+...... .| +
T Consensus 20 ~~~i~i~~g~I~~v~~~~~~----~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~l~~~~~~~~~~~~~~ 95 (424)
T PRK08393 20 RADVLIEGNKIVEVKRNINK----PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEWLQNYIWPRERKLKRK 95 (424)
T ss_pred cceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHHHHhhhccccccCCHH
Confidence 57899999999999875332 345799999999999999999998642110 00 0
Q ss_pred c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHH---HHH--
Q 013050 60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA---LLN-- 130 (450)
Q Consensus 60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 130 (450)
+ ......+++++|+||+.++. . ....+.........+....+.... ........+.+.+ +.+
T Consensus 96 ~~~~~a~~~~~e~l~~GvTtv~d~~-~------~~~~~~~a~~~~G~r~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 166 (424)
T PRK08393 96 DIYWGAYLGLLEMIKSGTTTFVDMY-F------HMEEVAKATLEVGLRGYLSYGMVD--LGDEEKREKEIKETEKLMEFI 166 (424)
T ss_pred HHHHHHHHHHHHHHhcCceEEeccc-c------CHHHHHHHHHHhCCeEEEeceEec--CCCccchHHHHHHHHHHHHHH
Confidence 1 11234477899999999984 1 122222222221111111111111 0111111122221 211
Q ss_pred --cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHH
Q 013050 131 --AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSW 207 (450)
Q Consensus 131 --~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (450)
.+...+...+.+. ....++++.++++++.|+++|+++.+|+.+.. .+....+..+ .
T Consensus 167 ~~~~~~~v~~~~~p~---~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------~---- 225 (424)
T PRK08393 167 EKLNSPRVHFVFGPH---APYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYG--------------K---- 225 (424)
T ss_pred hcCCCCceEEEEeCC---cCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC--------------c----
Confidence 1221222222221 12347889999999999999999999994332 2121111111 0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287 (450)
Q Consensus 208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (450)
..++.+.++.. . +.++.+.|+... +.+.++.+++.|+.+.. ||...... +
T Consensus 226 --~~~~~l~~~G~----l----~~~~~~~H~~~l--~~~~l~~la~~g~~v~~--~P~sn~~l-------g--------- 275 (424)
T PRK08393 226 --SPVVLLDEIGF----L----NEDVIAAHGVWL--SSRDIRILASAGVTVAH--NPASNMKL-------G--------- 275 (424)
T ss_pred --CHHHHHHHcCC----C----CCCcEEEEeecC--CHHHHHHHHhcCCEEEE--CHHHHHhh-------c---------
Confidence 01112211111 1 334445555532 22456666677765544 77432110 0
Q ss_pred CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh---cCCCHHHHHHHHhh
Q 013050 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQLASWWSE 364 (450)
Q Consensus 288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~gls~~~al~~aT~ 364 (450)
.....+.++++.|+.+++|||....+...+++. +..+...+..... ..++++++++++|.
T Consensus 276 ---~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~--------------~~~~a~~~~~~~~~~~~~~~~~~al~~aT~ 338 (424)
T PRK08393 276 ---SGVMPLRKLLNAGVNVALGTDGAASNNNLDMLR--------------EMKLAALLHKVHNLDPTIADAETVFRMATQ 338 (424)
T ss_pred ---cCCCCHHHHHHCCCcEEEecCCCccCCchhHHH--------------HHHHHHHHHhhccCCCCcCCHHHHHHHHHH
Confidence 011124566788999999999754322111110 0111111111111 12578999999999
Q ss_pred chhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcccCC
Q 013050 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAPA 441 (450)
Q Consensus 365 ~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~~ 441 (450)
|||+++|++ .|+|++||+||||++|.+.+...+.. .|+....+ .++|..|||+|++||++|++++.
T Consensus 339 ~~A~~lg~~-~G~l~~G~~ADlvvld~~~~~~~~~~----------~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 407 (424)
T PRK08393 339 NGAKALGLK-AGVIKEGYLADIAVIDFNRPHLRPIN----------NPISHLVYSANGNDVETTIVDGKIVMLDGEVLTL 407 (424)
T ss_pred HHHHHhCCC-CCccCCCCccCEEEEeCCCCCcCCCC----------ChHHHeeeeCCCCCeeEEEECCEEEEECCeECCC
Confidence 999999995 69999999999999998865443322 22222222 25799999999999999999765
Q ss_pred CC
Q 013050 442 AC 443 (450)
Q Consensus 442 ~~ 443 (450)
+.
T Consensus 408 d~ 409 (424)
T PRK08393 408 DE 409 (424)
T ss_pred CH
Confidence 43
No 56
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=100.00 E-value=6.8e-30 Score=238.07 Aligned_cols=330 Identities=18% Similarity=0.223 Sum_probs=253.0
Q ss_pred EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc--eEEEEecccc
Q 013050 38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWGGLV 115 (450)
Q Consensus 38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 115 (450)
+.+|---|+|+|+.+.. +....-.+...|||++++++ ++.|.....+.+....+.+....+ +++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~ 74 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDGA------MLKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLY 74 (341)
T ss_pred ceecCccceeeeccCch------HHHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEE
Confidence 46788889999998754 44555556677899999998 777777677777777777666653 5788888776
Q ss_pred CCCccchHHHHHHHHc-CCcEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050 116 PENAYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 193 (450)
Q Consensus 116 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 193 (450)
.......+++.++.+. |+.++|.|+...+.. +.+..+...+.++++.+++.|+++.+|+++... ....
T Consensus 75 ~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~----------~i~~ 144 (341)
T TIGR00856 75 LTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHG----------DIDI 144 (341)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCC----------Cccc
Confidence 5544466788888877 999999986432211 222345588999999999999999999976421 0000
Q ss_pred cccccccCCCChHHHHHHHH-HHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050 194 RSYSTYLKTRPPSWEEAAIR-ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 272 (450)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 272 (450)
. ..+...+. .+..++.+ .++.++|+.|+++. ++++.+++++. .+++++||||+.++.+
T Consensus 145 ~-----------~~e~~a~~~~i~~lA~~------~~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~~ 203 (341)
T TIGR00856 145 F-----------DREARFIESVLEPLRQR------FPALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTRN 203 (341)
T ss_pred c-----------cchhhhhHHHHHHHHHH------ccCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccHH
Confidence 0 00222234 33344443 34889999999998 99999988754 3999999999999998
Q ss_pred ccCC--CCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH
Q 013050 273 EIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349 (450)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 349 (450)
.+.. ++..++++||+|...+++.+|+++.+|... +++|||+|+....+.. +.++.|+.+++..++.++...
T Consensus 204 ~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~~~- 277 (341)
T TIGR00856 204 DLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAEVF- 277 (341)
T ss_pred HHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHHHH-
Confidence 8755 578899999999999999999999999999 6999999998777642 136789999999999887655
Q ss_pred hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccC-CceEeeEE
Q 013050 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKV 422 (450)
Q Consensus 350 ~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v 422 (450)
+.++|+++++++.+.|||+++|++ .| .|||+|++ ..+++... .+.+... ++||. |..+.++|
T Consensus 278 ~~~~~l~~~v~~~s~nPAk~~gl~-~~------dAdi~~~~--~~~~i~~~-~~~s~~~-~sp~~~~~~~~~~v 340 (341)
T TIGR00856 278 EEMNALENLEAFCSDNGPQFYGLP-VN------STKIELVK--KEQQIPES-IALTDDT-LVPFRAGETLSWSV 340 (341)
T ss_pred hcCCCHHHHHHHHhHhHHHHhCCC-CC------CceEEEEe--ccEEeCch-hccCCCC-cccccCCcccceee
Confidence 448999999999999999999993 34 89999994 66999888 7888877 99994 66665554
No 57
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=100.00 E-value=2.6e-30 Score=250.04 Aligned_cols=355 Identities=18% Similarity=0.124 Sum_probs=194.6
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCC-CCCcEEecCCCEEeccceeeccccCCCCCC--------cc--------c----c
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNS-KTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------EW--------E----G 60 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~-~~~~viD~~g~~v~PG~iD~H~H~~~~~~~--------~~--------~----~ 60 (450)
.+++|+|+||+|++|++..+..... ++.++||+.|++|||||||+|+|+...... .| + +
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 5789999999999999865432111 356899999999999999999998542111 00 0 0
Q ss_pred -------hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccC----CCccchHHHHHH
Q 013050 61 -------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVP----ENAYNASALEAL 128 (450)
Q Consensus 61 -------~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~ 128 (450)
......+++++|||++++++ ...+ .....+....+....+.......... ... ......+...++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~--~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 161 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFA-TVHP--ESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKAL 161 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc-ccCH--HHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHH
Confidence 01123578999999999985 2211 11112222222111111111111110 000 001122333344
Q ss_pred HH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCC-hhhhhhhhhhccCcCCccccccccCCCC
Q 013050 129 LN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRP 204 (450)
Q Consensus 129 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p 204 (450)
++ .+...++....+. ..+.++.+.++++++.|+++ |+++.+|+.+ ...........+ ..|
T Consensus 162 i~~~~~~g~i~~~~~~~---~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~-------------~~~ 225 (401)
T TIGR02967 162 IERWHGKGRLLYAVTPR---FAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFP-------------EAK 225 (401)
T ss_pred HHHHhCcCCceEEEECC---cCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcC-------------CCC
Confidence 33 1211233333332 22467889999999999999 9999999943 222111111110 000
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050 205 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA 284 (450)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (450)
...+...+.. .-+.++.+.|+... +.+.++.+++.|+.+.. ||...... +
T Consensus 226 ---------~~~~~l~~~g----~lg~~~~~~H~~~~--~~~~~~~l~~~g~~v~~--~P~~~~~~-------~------ 275 (401)
T TIGR02967 226 ---------DYLDVYDHYG----LLGRRSVFAHCIHL--SDEECQRLAETGAAIAH--CPTSNLFL-------G------ 275 (401)
T ss_pred ---------cHHHHHHHCC----CCCCCeEEEecccC--CHHHHHHHHHcCCeEEE--ChHHHHHh-------c------
Confidence 0122222220 11445666777653 23457777777765554 66532110 0
Q ss_pred CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHHhcCCCHHHHHHHHh
Q 013050 285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGRKYGVTLEQLASWWS 363 (450)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~gls~~~al~~aT 363 (450)
.....+.++++.|+.+++|||+...+.. ++ .+.. ....+......+++++++++|+|
T Consensus 276 ------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~aT 333 (401)
T TIGR02967 276 ------SGLFNLKKALEHGVRVGLGTDVGGGTSF-SM---------------LQTLREAYKVSQLQGARLSPFEAFYLAT 333 (401)
T ss_pred ------cCCCCHHHHHHCCCeEEEecCCCCCCCc-CH---------------HHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 0011245668889999999996432110 10 1111 11111112235699999999999
Q ss_pred hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECC
Q 013050 364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRG 429 (450)
Q Consensus 364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G 429 (450)
.|||+++|+ +++|+|++||.|||+++|.+.+...+.. -...... ..|+...++. .+|+.|||+|
T Consensus 334 ~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~~~~~~~v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 334 LGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALR-FEGADTL-EDKLFKLMYLGDDRNVAETYVAG 401 (401)
T ss_pred HHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccc-cccccch-hhHHHHheeecCccceeEEEeCC
Confidence 999999999 5799999999999999998754221100 0000011 2344444443 4699999998
No 58
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=100.00 E-value=2.7e-30 Score=247.91 Aligned_cols=335 Identities=21% Similarity=0.228 Sum_probs=211.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCC---------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 72 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~---------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G 72 (450)
++++|.|+||+|++|++..+.... ....++||++|++|+|||||+|+|+..++ ..+.++++|
T Consensus 87 ~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg---------~~~aALagG 157 (573)
T PRK13206 87 VKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQ---------IVDEALAAG 157 (573)
T ss_pred EEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCch---------HHHHHHcCC
Confidence 357999999999999975321100 13468999999999999999999987654 238889999
Q ss_pred ceEEEeCCCCC----CCCCCc--HHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050 73 ITTLIDMPLNS----DPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 146 (450)
Q Consensus 73 vT~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (450)
|||+++++.+. .+.... ...+..+.+..+ ..++++.+++.. +....+.+.++.+.|+.++|.+..+
T Consensus 158 VTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~g---~~~~~~~L~el~~aGA~GfKi~~d~---- 229 (573)
T PRK13206 158 ITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGKG---NTVSAEALWEQLRGGAGGFKLHEDW---- 229 (573)
T ss_pred eEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecCc---CcCCHHHHHHHHHCCCcEEeecCcc----
Confidence 99999974221 111111 123334444444 467888888733 2333568899999999999986432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
..+++.+.++++.|++++++|.+|++..+. ...++..+....
T Consensus 230 ---g~t~~~i~~aL~~A~~~gv~V~iHadtlne-----------------------------~g~~E~t~aa~~------ 271 (573)
T PRK13206 230 ---GSTPAAIDACLRVADAAGVQVALHSDTLNE-----------------------------AGFVEDTLAAIA------ 271 (573)
T ss_pred ---CCCHHHHHHHHHHHHHhCCEEEEECCCccc-----------------------------cchhhHHHHHhc------
Confidence 478899999999999999999999976542 112233333333
Q ss_pred CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-
Q 013050 227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK- 293 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~- 293 (450)
|..+|..|.... ....+.++.+...++..+ +.+| ..-++.+.+.. .-.+.+.+|.+.+- +-+
T Consensus 272 ---gr~iH~~H~egaggghapd~~~~~~~~n~lp~-stnp-t~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~ 346 (573)
T PRK13206 272 ---GRSIHAYHTEGAGGGHAPDIITVASHPNVLPS-STNP-TRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRP 346 (573)
T ss_pred ---CCeEEEEeccCCCcCcccHHHHhcCCCCCcCC-CCCC-CCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhccc
Confidence 888999999753 134555665544432111 1111 12222222211 12233444443211 101
Q ss_pred H---HHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH----------HhcCCCHHHHHH
Q 013050 294 E---KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG----------RKYGVTLEQLAS 360 (450)
Q Consensus 294 ~---~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~gls~~~al~ 360 (450)
+ +-..+++.|+..+++||+......-.. .... +....... .+..++.+++|+
T Consensus 347 ~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~--------------~~~~-~q~a~~~~~rr~~l~g~~~~~~~~v~~al~ 411 (573)
T PRK13206 347 STIAAEDVLHDMGAISMIGSDSQAMGRIGEV--------------VLRT-WQTAHVMKRRRGALPGDGRADNNRARRYVA 411 (573)
T ss_pred eeeccCchHhhCCcEEeccCCccccccccch--------------hhhH-HHHHHHHHhccCCCCCCCcccchhHHHHHH
Confidence 0 012356679999999997542111000 0000 00000000 123489999999
Q ss_pred HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
++|.|||+++|+ +.+|+|++||.||||+||.+.. . .++..||++|+++|..
T Consensus 412 ~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f----------~--------------~~~~~ti~~G~iv~~~ 463 (573)
T PRK13206 412 KYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFF----------G--------------VRPHAVLKGGAIAWAA 463 (573)
T ss_pred HHHHHHHHHhCCCcCCcccCCCCcCCEEEECcccc----------C--------------CCccEEEECCEEEEec
Confidence 999999999999 6799999999999999995520 0 1567899999999986
No 59
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.98 E-value=3.7e-31 Score=255.31 Aligned_cols=216 Identities=23% Similarity=0.243 Sum_probs=147.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
+.+..+.+.|.++++.+.++|+++.+|+-. +.+++.+++..++.+...
T Consensus 314 G~~l~~~e~l~~~v~~a~~~gl~v~vHAiG--------------------------------D~Av~~~LdafE~~~~~~ 361 (535)
T COG1574 314 GELLLTEEELEELVRAADERGLPVAVHAIG--------------------------------DGAVDAALDAFEKARKKN 361 (535)
T ss_pred CCcccCHHHHHHHHHHHHHCCCcEEEEEec--------------------------------hHHHHHHHHHHHHHhhhc
Confidence 567789999999999999999999999932 445788888888876666
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh--hhHHHHHHHHhcCC
Q 013050 227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA--ANKEKLWEALMDGH 304 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~ 304 (450)
+..+.+.++.|+.. -..+++++++++|+ .++++|++.......+.. .+... ....++..+++.|+
T Consensus 362 ~~~~~r~rieH~~~--v~~~~i~R~~~Lgv--~~svQP~f~~~~~~~~~~---------rlG~~r~~~~~p~~~ll~~G~ 428 (535)
T COG1574 362 GLKGLRHRIEHAEL--VSPDQIERFAKLGV--IASVQPNFLFSDGEWYVD---------RLGEERASRSYPFRSLLKAGV 428 (535)
T ss_pred CCccCCceeeeeee--cCHhHHHHHHhcCc--eEeeccccccccchHHHH---------hhhhhhhhccCcHHHHHHCCC
Confidence 55678888999886 56678888888774 555577766543211110 01111 11123456788999
Q ss_pred eeEEcCCC--CCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccC
Q 013050 305 IDMLSSDH--SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIG 381 (450)
Q Consensus 305 ~~~~gtD~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G 381 (450)
.++.|||+ .|.+++......- .-..+.|.. ...+..||++++|+++|.|+|++.+. +++|+|++|
T Consensus 429 ~la~gSD~Pv~~~dP~~~i~~AV-tr~~~~g~~-----------~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G 496 (535)
T COG1574 429 PLAGGSDAPVEPYDPWLGIYAAV-TRKTPGGRV-----------LGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPG 496 (535)
T ss_pred eEeccCCCCCCCCChHHHHHHHH-cCCCCCCCC-----------CccccccCHHHHHHHHhhhhHHhhhccccccccccC
Confidence 99999997 3333332110000 000000000 00011599999999999999999999 889999999
Q ss_pred CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
|.|||+|+|.|+ ++++.+ .....+|..|+++||+||+.
T Consensus 497 ~~AD~~Vld~d~-f~~~~~---------------~i~~~~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 497 KLADFAVLDRDP-FTVDPD---------------SIKDTKVVLTIVAGKVVYRA 534 (535)
T ss_pred ceeeEEEecCCc-ccCChH---------------HhccceEEEEEEcCeEeecC
Confidence 999999999765 433322 22235899999999999974
No 60
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.98 E-value=7.4e-30 Score=247.67 Aligned_cols=350 Identities=18% Similarity=0.134 Sum_probs=192.5
Q ss_pred cceeEEEeCCEEEEeccCCCCC-CCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc--------c----
Q 013050 2 CKRAVEIKEGNIISIVSEEDWP-RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------E---- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~-~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~--------~---- 59 (450)
.+++|+|+||+|++||+..+.. ...++.++||+.|++|||||||+|+|+....+. .| +
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 5789999999999999864331 112457899999999999999999998643110 01 0
Q ss_pred ---c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCceEEEEeccccCC--Ccc---chHH
Q 013050 60 ---G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE--NAY---NASA 124 (450)
Q Consensus 60 ---~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~---~~~~ 124 (450)
. ......+++++|||+++++. ... ........+.+.. +..+.........+. ... ..+.
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~-----~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFA-TIH-----PESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRD 178 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeec-ccC-----hhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHH
Confidence 0 11223477999999999985 221 1122222222222 111111111100010 011 1112
Q ss_pred HHHHHHc--CC-cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEecCC-hhhhhhhhhhccCcCCccccccc
Q 013050 125 LEALLNA--GV-LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTY 199 (450)
Q Consensus 125 ~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
..++++. +. ..+...+.+. ....++.+.++++.+.|+++| +++.+|+.+ ...+.......+.
T Consensus 179 ~~~~i~~~~~~~~~v~~~~~p~---~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~---------- 245 (429)
T cd01303 179 TKRLIERWHGKSGRVKPAITPR---FAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPG---------- 245 (429)
T ss_pred HHHHHHHHhCcCCceEEEEecC---cCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCC----------
Confidence 2222221 11 1233322221 123578899999999999999 999999943 2221111111000
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050 200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 279 (450)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 279 (450)
....++...+.. .-+.++.+.|+... +.+.++.+++.|+.+.. ||.....- +
T Consensus 246 ------------~~~p~~~l~~~G----~l~~~~~l~H~~~l--~~~~~~~l~~~g~~v~~--~P~sn~~l-------~- 297 (429)
T cd01303 246 ------------ARDYLDVYDKYG----LLTEKTVLAHCVHL--SEEEFNLLKERGASVAH--CPTSNLFL-------G- 297 (429)
T ss_pred ------------CCCHHHHHHHCC----CCCCCcEEEeCCCC--CHHHHHHHHHcCCEEEE--Cccchhhh-------c-
Confidence 001112222210 01446677787763 33457777777766554 66432110 0
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHH------hcC
Q 013050 280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR------KYG 352 (450)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~------~~g 352 (450)
.....+.++++.|+.+++|||+.+.+... + .+.. +...+.... ..+
T Consensus 298 -----------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d-~---------------~~~~~~~~~~~~~~~~~~~~~~~ 350 (429)
T cd01303 298 -----------SGLFDVRKLLDAGIKVGLGTDVGGGTSFS-M---------------LDTLRQAYKVSRLLGYELGGHAK 350 (429)
T ss_pred -----------cCCCCHHHHHHCCCeEEEeccCCCCCCcc-H---------------HHHHHHHHHHHHhhccccCCcCC
Confidence 01123457788999999999975332111 0 1111 111111111 235
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceee-CCCCCccc-CCCCccccCCceEe---eEEEEEE
Q 013050 353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFEL-DNDHPVHM-KHPSISAYLGRRLS---GKVLATI 426 (450)
Q Consensus 353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~~v~~v~ 426 (450)
++++++++|+|.|||+++|+ +++|+|++||+||||++|.+++... +.. .+ ... ..|+...++. .+|+.||
T Consensus 351 ~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~---~~~~~~-~d~~~~lV~~~~~~~V~~v~ 426 (429)
T cd01303 351 LSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRM---FRVESL-EEALFKFLYLGDDRNIREVY 426 (429)
T ss_pred CCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCcccccccc---ccccch-hhHHHHHeeeCCCCCeeEEE
Confidence 89999999999999999999 6789999999999999998865322 110 00 000 2244434443 4699999
Q ss_pred ECC
Q 013050 427 SRG 429 (450)
Q Consensus 427 v~G 429 (450)
|+|
T Consensus 427 V~G 429 (429)
T cd01303 427 VAG 429 (429)
T ss_pred eCC
Confidence 998
No 61
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.98 E-value=4.8e-29 Score=240.42 Aligned_cols=344 Identities=22% Similarity=0.288 Sum_probs=202.4
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---CcccchHHHHHHHHhCCceEEEeC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
.++|+|+||+|++|++..+.+......++||++|++|+|||||+|+|+..... ....++....+.++.+|+||++++
T Consensus 18 ~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~ 97 (388)
T PRK10657 18 KKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGL 97 (388)
T ss_pred ceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECC
Confidence 47999999999999875432211235689999999999999999999863211 111245567789999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEE-Eecccc-CC---CccchHHHHHHHHcCCcEE-EEecccCCCCCCCCCCH
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVG-FWGGLV-PE---NAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNA 153 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 153 (450)
+ +..+.......+....+.+.. ..++.. ..+... +. .....+.+. +. ..+.++ +..... ......+.
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~g~~~~~~---~~~~~~~~ 170 (388)
T PRK10657 98 L-GTDGITRSMESLLAKARALEE-EGISAYMYTGSYHVPVRTITGSIRKDIV-LI-DKVIGVGEIAISD---HRSSQPTV 170 (388)
T ss_pred C-CCCCCCCCHHHHHHHHHHHHh-hCCEEEEEecCCCCCchhhhcchhhcee-hh-hhhhCcceeeecc---CCCCCCCH
Confidence 7 554444444444443333322 123322 222111 11 000011110 00 011111 111110 01113466
Q ss_pred HHHHHHHHHHHhcCC------cEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050 154 SHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 227 (450)
Q Consensus 154 ~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 227 (450)
+++.++.+.++..+. ++.+|..... ..++.+.+++++.
T Consensus 171 ~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~-------------------------------~~l~~v~~~l~~~----- 214 (388)
T PRK10657 171 EELARLAAEARVGGLLSGKAGIVHVHMGDGK-------------------------------KGLQPLFELLENT----- 214 (388)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCch-------------------------------HHHHHHHHHHHhc-----
Confidence 777777776665444 6888873211 1233332333222
Q ss_pred CCCce---EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh---hhHHHHHHHHh
Q 013050 228 AEGAH---LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA---ANKEKLWEALM 301 (450)
Q Consensus 228 ~~~~~---~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 301 (450)
|.. +...|+.......+...++.++|..+.... ..|+++.. .....++++++
T Consensus 215 --Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~--------------------~~~~~~~~~~~~~~~~l~~~~~ 272 (388)
T PRK10657 215 --DIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTT--------------------SDPDFLGEGEVAPAEALKRALE 272 (388)
T ss_pred --CCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEec--------------------CCCcccccCccCHHHHHHHHHH
Confidence 322 344555432133344445445554332221 11222111 34577899999
Q ss_pred cCC---eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCcc
Q 013050 302 DGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAI 378 (450)
Q Consensus 302 ~g~---~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I 378 (450)
+|. .++++||+....+... ..+.+ .+.|..+....+..+.......++|++++++++|.|||+++|+...|+|
T Consensus 273 ~G~~~d~v~l~tD~~~~~~~~~--~~g~~--~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~~G~l 348 (388)
T PRK10657 273 AGVPLSRVTLSSDGNGSLPKFD--EDGNL--VGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNGKGEI 348 (388)
T ss_pred cCCChhheEEECCCCCCCceec--cCCCE--eccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 998 6799999754432211 11111 2335566666666666556688999999999999999999999438999
Q ss_pred ccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCC
Q 013050 379 AIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 442 (450)
Q Consensus 379 ~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~ 442 (450)
++|+.|||+++| +. .+|..||++|++|+++|+++.+.
T Consensus 349 ~~G~~AD~vv~~-~~--------------------------~~~~~~~~~G~~v~~~~~~~~~~ 385 (388)
T PRK10657 349 LPGKDADLLVLD-DD--------------------------LRIEQVIAKGKLMVKDGKALVKG 385 (388)
T ss_pred CCCCccCEEEEC-CC--------------------------CCEEEEEECCEEEEECCEEeccc
Confidence 999999999999 31 16889999999999999998764
No 62
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.97 E-value=9.3e-30 Score=247.14 Aligned_cols=345 Identities=17% Similarity=0.145 Sum_probs=197.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-------ccc---------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-------EWE--------------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-------~~~--------------- 59 (450)
..++|+|+||+|++|++..+.+ ++.++||++|++|+|||||+|+|+...... .+.
T Consensus 13 ~~~~v~I~~g~I~~Vg~~~~~~---~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
T cd01293 13 ALVDIAIEDGRIAAIGPALAVP---PDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAIIAWEERKLLL 89 (398)
T ss_pred eEEEEEEECCEEEEEecCCCCC---CCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHHHHHHHHhcc
Confidence 3578999999999999875432 467899999999999999999999642100 000
Q ss_pred ---c----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHHH
Q 013050 60 ---G----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALL 129 (450)
Q Consensus 60 ---~----~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (450)
+ ......+++++|||+++++. ...+. ....+......+................. .......+.+++..
T Consensus 90 t~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 168 (398)
T cd01293 90 TAEDVKERAERALELAIAHGTTAIRTHV-DVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGGEELMREAL 168 (398)
T ss_pred ChHHHHHHHHHHHHHHHHcChhheeeee-cccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCHHHHHHHHH
Confidence 0 12234578999999998874 22221 11122222222222222111111111000 01123345666666
Q ss_pred HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHH
Q 013050 130 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209 (450)
Q Consensus 130 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (450)
+.|..-+..+ .+. ....++.+.++++++.|+++|+++.+|+.+... + ..
T Consensus 169 ~~g~~~~~~~-~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~------------------------~---~~ 217 (398)
T cd01293 169 KMGADVVGGI-PPA---EIDEDGEESLDTLFELAQEHGLDIDLHLDETDD------------------------P---GS 217 (398)
T ss_pred HhCCCEEeCC-CCC---cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCC------------------------c---ch
Confidence 6665322211 111 113567899999999999999999999954321 0 01
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA 284 (450)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (450)
..+...++.+.+... ..++.+.|+... .+..+.++.+++.|+.+.. ||........... ..
T Consensus 218 ~~~~~~~~~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~--~p~s~~~l~~~~~-------~~ 283 (398)
T cd01293 218 RTLEELAEEAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVS--LPPINLYLQGRED-------TT 283 (398)
T ss_pred hHHHHHHHHHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEe--CCCcchhhccccc-------CC
Confidence 122334444444310 124667777642 1224678888888876665 5543211100000 00
Q ss_pred CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC----CHHHHHH
Q 013050 285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV----TLEQLAS 360 (450)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl----s~~~al~ 360 (450)
+ .......+.++++.|+.+++|||+... +.. +.+.. ..+..+.......++ +.+++|+
T Consensus 284 ~---~~~~~~~~~~~~~~Gv~v~lGTD~~~~-~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~al~ 345 (398)
T cd01293 284 P---KRRGVTPVKELRAAGVNVALGSDNVRD-PWY-----------PFGSG---DMLEVANLAAHIAQLGTPEDLALALD 345 (398)
T ss_pred C---CCCCCCcHHHHHHCCCeEEECCCCCCC-CCc-----------CCCCC---CHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 0 011233467788999999999996420 000 00000 011111111122344 3478999
Q ss_pred HHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050 361 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 432 (450)
Q Consensus 361 ~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 432 (450)
++|.|||+++|+ +.|+|+|||+||||++|.+++.++. .. ..++..||++|+++
T Consensus 346 ~aT~~~A~~lg~-~~G~l~~Gk~ADlv~~d~~~~~~~~------~~------------~~~~~~v~~~G~~~ 398 (398)
T cd01293 346 LITGNAARALGL-EDYGIKVGCPADLVLLDAEDVAEAV------AR------------QPPRRVVIRKGRVV 398 (398)
T ss_pred hcChhhhhhcCC-cCcccccCCcceEEEECCCCHHHHH------hc------------CCCccEEEECCEEC
Confidence 999999999999 6899999999999999988643221 00 13788999999875
No 63
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.97 E-value=8.9e-30 Score=247.40 Aligned_cols=346 Identities=15% Similarity=0.117 Sum_probs=197.7
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc--------------c
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------------E 59 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~--------------~ 59 (450)
+++|+|++|+|.+|++.... +..++||+.|++|+|||||+|+|+....+. .| +
T Consensus 21 ~~~v~v~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (430)
T PRK06038 21 KGSVVIEDGTITEVSESTPG----DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAEWLNDHIWPAEAKLTAE 96 (430)
T ss_pred ccEEEEECCEEEEecCCCCC----CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHHHHHhhhhhchhcCCHH
Confidence 46899999999999986322 345799999999999999999999643110 00 0
Q ss_pred ch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-eccccCCC-c---cchHHHHHHHH
Q 013050 60 GF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-WGGLVPEN-A---YNASALEALLN 130 (450)
Q Consensus 60 ~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~ 130 (450)
.. .....+++.+|+|+++|+. . ....+. +..... .++... ++...... . ..++...++++
T Consensus 97 ~~~~~a~~~~~e~l~~G~Ttv~D~~-~------~~~~~~---~a~~~~-GiR~~~~~~~~d~~~~~~~~~~l~~~~~~i~ 165 (430)
T PRK06038 97 DVYAGSLLACLEMIKSGTTSFADMY-F------YMDEVA---KAVEES-GLRAALSYGMIDLGDDEKGEAELKEGKRFVK 165 (430)
T ss_pred HHHHHHHHHHHHHHhcCceeEEccc-c------CHHHHH---HHHHHh-CCeEEEEchhccCCCccchHHHHHHHHHHHH
Confidence 00 1124477899999999985 1 111111 222111 222211 11111111 1 11222223322
Q ss_pred c--C--CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhh-ccCcCCccccccccCCCCh
Q 013050 131 A--G--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL-EDDTLDTRSYSTYLKTRPP 205 (450)
Q Consensus 131 ~--g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ 205 (450)
. + ...+...+.+. ....++++.+.++++.|+++|+++.+|+.+.......+.. .+
T Consensus 166 ~~~~~~~g~v~~~~~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G----------------- 225 (430)
T PRK06038 166 EWHGAADGRIKVMYGPH---APYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYG----------------- 225 (430)
T ss_pred HhcCCCCCceEEEEeCC---cCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhC-----------------
Confidence 1 1 11233322222 2236788999999999999999999999554321111110 00
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcC
Q 013050 206 SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP 285 (450)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (450)
...++...+.. ..+.++.+.|+... +.+.++.+++.|+.+.. ||......
T Consensus 226 -------~~~i~~l~~~g----~l~~r~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~~n~~~--------------- 275 (430)
T PRK06038 226 -------MCSVNYLDDIG----FLGPDVLAAHCVWL--SDGDIEILRERGVNVSH--NPVSNMKL--------------- 275 (430)
T ss_pred -------CCHHHHHHHcC----CCCCCeEEEEEecC--CHHHHHHHHhcCCEEEE--ChHHhhhh---------------
Confidence 00111122210 01344555565542 22347777777876554 66532210
Q ss_pred CCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH---HhcCCCHHHHHHH
Q 013050 286 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG---RKYGVTLEQLASW 361 (450)
Q Consensus 286 ~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~---~~~gls~~~al~~ 361 (450)
......+.++++.|+.+++|||+.+.+...+++ ..+ ........ ...+++++++++|
T Consensus 276 ----~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~---------------~~~~~a~~~~~~~~~~~~~~~~~~al~~ 336 (430)
T PRK06038 276 ----ASGIAPVPKLLERGVNVSLGTDGCASNNNLDMF---------------EEMKTAALLHKVNTMDPTALPARQVLEM 336 (430)
T ss_pred ----ccCCCCHHHHHHCCCeEEEeCCCCccCCCcCHH---------------HHHHHHHHHhhhccCCCCcCCHHHHHHH
Confidence 001123557788999999999965332111111 111 11111111 1246899999999
Q ss_pred HhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcc
Q 013050 362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNH 438 (450)
Q Consensus 362 aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~ 438 (450)
+|.|||+++|++ .|+|++||.||||++|.+.+...+.. .|+...++ ..+|..|||+|+++|++|++
T Consensus 337 aT~~gA~~lg~~-~G~l~~G~~ADlvvld~~~~~~~p~~----------~~~~~~v~~~~~~~v~~v~v~G~~v~~~g~~ 405 (430)
T PRK06038 337 ATVNGAKALGIN-TGMLKEGYLADIIIVDMNKPHLTPVR----------DVPSHLVYSASGSDVDTTIVDGRILMEDYKV 405 (430)
T ss_pred HhHHHHHHhCCC-CCccCCCcccCEEEEeCCCCccCCCC----------ChHHheeEeCCCCceeEEEECCEEEEECCeE
Confidence 999999999995 69999999999999998854322111 12221222 23799999999999999999
Q ss_pred cCCCC
Q 013050 439 APAAC 443 (450)
Q Consensus 439 ~~~~~ 443 (450)
+..++
T Consensus 406 ~~~d~ 410 (430)
T PRK06038 406 LCMDE 410 (430)
T ss_pred CCCCH
Confidence 86543
No 64
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=99.97 E-value=4.8e-29 Score=240.10 Aligned_cols=340 Identities=22% Similarity=0.275 Sum_probs=208.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCC-------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCce
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGIT 74 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~-------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT 74 (450)
.+++|+|+||||++|++...+... ..+.++||++|++|+|||||+|+|+..++. .+.++++|||
T Consensus 83 ~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~~---------~~aALagGVT 153 (568)
T PRK13207 83 VKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQQ---------IEEALASGVT 153 (568)
T ss_pred EEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccccH---------HHHHHcCCCC
Confidence 468999999999999975322100 135789999999999999999999876541 4788999999
Q ss_pred EEEeCCCCC----CCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCC
Q 013050 75 TLIDMPLNS----DPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF 148 (450)
Q Consensus 75 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (450)
|+++++.+. .+.. .....+....+..+ ...+++.+++. ......+.+.++++.|+.++|.+..+
T Consensus 154 TVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~---g~~~~~~~L~e~i~aGA~gfKi~~d~------ 223 (568)
T PRK13207 154 TMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGK---GNASLPEALEEQIEAGAIGLKLHEDW------ 223 (568)
T ss_pred EEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcC---CCcccHHHHHHHHHcCCCEEeecCCC------
Confidence 999984211 1111 11233444444433 34577777652 22345678888999999999987533
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCC
Q 013050 149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 228 (450)
Q Consensus 149 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 228 (450)
..+++.+.++++.|+++|++|.+|++..+. ...++..++...
T Consensus 224 -g~t~~~l~~aL~~A~~~gv~V~iHa~tlne-----------------------------~G~~e~t~~a~~-------- 265 (568)
T PRK13207 224 -GATPAAIDNCLSVADEYDVQVAIHTDTLNE-----------------------------SGFVEDTIAAFK-------- 265 (568)
T ss_pred -CCCHHHHHHHHHHHHHhCCEEEEeCCCccc-----------------------------chHHHHHHHhcC--------
Confidence 357899999999999999999999965432 111233333333
Q ss_pred CCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-HH
Q 013050 229 EGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-EK 295 (450)
Q Consensus 229 ~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-~~ 295 (450)
+..+|..|.... ....+.++.+...++-.+ +.+| ..-++.+.+.. .-.+.+.++.+.+- +-+ +-
T Consensus 266 -g~~iH~~H~egaggghapdii~~~~~~~v~p~-st~p-t~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t 342 (568)
T PRK13207 266 -GRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPS-STNP-TRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRET 342 (568)
T ss_pred -CCEEEEEeecCCCcCCchHHHHHhhcCCCccC-CCCC-CCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcccee
Confidence 788999997632 144566666666553221 1122 22222222211 12233344433211 000 00
Q ss_pred H---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC-------CHHHH---HHHH
Q 013050 296 L---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-------TLEQL---ASWW 362 (450)
Q Consensus 296 l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl-------s~~~a---l~~a 362 (450)
+ .-+++.|+..+++||+..... . |...........-.......+ +.+.+ |+++
T Consensus 343 ~~ae~~l~d~Ga~~~~~SD~p~~~~---------~-----~~~~~r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~l~~~ 408 (568)
T PRK13207 343 IAAEDILHDLGAISMISSDSQAMGR---------V-----GEVIIRTWQTAHKMKVQRGPLPGDSGRNDNFRVKRYIAKY 408 (568)
T ss_pred ecccchhhhCCCEEEecCCcccccc---------c-----ccchhHHHHHHHHHHHccCCCCcccccCccchHHHHHHHH
Confidence 0 124667999999999753211 0 000000000000000000111 11222 9999
Q ss_pred hhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-Cccc
Q 013050 363 SERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 439 (450)
Q Consensus 363 T~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~~ 439 (450)
|.|||+++|+ +.+|+|++||.||||||+.+. +. .++..||++|+++|.. |.+.
T Consensus 409 T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~----------f~--------------~~~~~ti~~G~iv~~~~gd~~ 463 (568)
T PRK13207 409 TINPAIAHGISHEVGSVEVGKLADLVLWKPAF----------FG--------------VKPELVLKGGMIAWAPMGDPN 463 (568)
T ss_pred hHHHHHHcCCCcCccccCCCCcCCEEEECchh----------cC--------------CCceEEEECCEEEEecCCCcc
Confidence 9999999999 779999999999999999542 00 2567999999999997 6655
No 65
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.97 E-value=6.6e-29 Score=239.25 Aligned_cols=343 Identities=18% Similarity=0.223 Sum_probs=203.1
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---cccchHHHHHHHHhCCceEEEe
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLID 78 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---~~~~~~~~~~~~~~~GvT~~~~ 78 (450)
.+++|+|++|+|++|++..+.+. ..+.++||++|++|+|||||+|+|+...+.. ...+......+++.+|+||+++
T Consensus 16 ~~~~v~i~~g~I~~v~~~~~~~~-~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d 94 (387)
T cd01308 16 GKKDILIAGGKILAIEDQLNLPG-YENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVG 94 (387)
T ss_pred cceEEEEECCEEEEEeCCccccc-CCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEec
Confidence 35789999999999998654321 2356899999999999999999998653111 1122334556889999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---c----chHHHHHHHHcCCcEEEEecccCCCCCCCCC
Q 013050 79 MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---Y----NASALEALLNAGVLGLKSFMCPSGINDFPMT 151 (450)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 151 (450)
++ +..+.....+.+....+.+.......+...+....... + .+..++.+...|..+.+. + .....
T Consensus 95 ~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~----~~~~~ 166 (387)
T cd01308 95 CL-GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIGVGEIAISD---H----RSSQP 166 (387)
T ss_pred Cc-CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcCcceEEEcC---C----CCCCC
Confidence 86 44444444555544444443332222222221111101 1 111122211112222221 1 11235
Q ss_pred CHHHHHHHHHHHHhcCC----c--EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccC
Q 013050 152 NASHIKEGLSVLARYKR----P--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 225 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~----~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 225 (450)
...++.++...++..+. + +.+|.... ...++++.++.++.
T Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~-------------------------------~~~~~~i~~~~~~~--- 212 (387)
T cd01308 167 TVEELARIAAEARVGGLLGGKAGIVHIHLGDG-------------------------------KRALSPIFELIEET--- 212 (387)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc-------------------------------hHHHHHHHHHHHhc---
Confidence 66777777777776443 3 55555211 23467777777754
Q ss_pred CCCCCceE-EEEecCChhHHHH---HHHHHHhCCCcEEE--ecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHH
Q 013050 226 GPAEGAHL-HIVHLSDASSSLD---LLMEAKTNGDSITV--ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 299 (450)
Q Consensus 226 ~~~~~~~~-~~~h~~~~~~~~~---~~~~~~~~g~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (450)
|.++ ++.|.+.. ...+ ...+..+.|..+.. ..++++. ..++. .....++.+
T Consensus 213 ----G~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~---------------~~~~~---~~~~~l~~~ 269 (387)
T cd01308 213 ----EIPITQFLPTHIN-RTAPLFEQGVEFAKMGGTIDLTSSIDPQFR---------------KEGEV---RPSEALKRL 269 (387)
T ss_pred ----CCCcceeECCccc-CCHHHHHHHHHHHHcCCcEEEECCCCcccc---------------ccCcc---ChHHHHHHH
Confidence 6655 66555543 2222 23333344432222 2222111 11222 234666778
Q ss_pred HhcCCe---eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 013050 300 LMDGHI---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 376 (450)
Q Consensus 300 ~~~g~~---~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G 376 (450)
++.|.. ++++||+....+.. ...+.+ ...|..+....+..+.......++|++++++++|.|||+++|++..|
T Consensus 270 ~~~g~~~d~i~l~TD~~~~~p~~--~~~g~~--~~~g~~~~~~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~~~~G 345 (387)
T cd01308 270 LEQGVPLERITFSSDGNGSLPKF--DENGNL--VGLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKG 345 (387)
T ss_pred HHhCCCCCcEEEEECCCCCcccC--ccCCeE--EecCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 888752 58999974221111 111211 12355666666666654445567999999999999999999994389
Q ss_pred ccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 441 (450)
Q Consensus 377 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 441 (450)
+|++|++|||+|+|.+. ++..|+++|++|++||++..+
T Consensus 346 ~i~~G~~ADlvv~d~~~---------------------------~~~~~~~~G~~v~~~~~~~~~ 383 (387)
T cd01308 346 EIQPGFDADLVILDKDL---------------------------DINSVIAKGQIMVRNGKLLVK 383 (387)
T ss_pred CcCCCCcCCEEEEcCCC---------------------------CEEEEEECCEEEEECCeEeec
Confidence 99999999999999541 578899999999999998754
No 66
>PRK07213 chlorohydrolase; Provisional
Probab=99.97 E-value=1.5e-29 Score=241.41 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=186.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---------Ccc--------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---------TEW-------------- 58 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---------~~~-------------- 58 (450)
.+++|+|++|+|.+|++.. +..+++|+.|++| |||||+|+|+..... ..+
T Consensus 18 ~~~~v~i~~g~I~~i~~~~------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~~ 90 (375)
T PRK07213 18 KKGNLVIEDGIIKGFTNEV------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELVKPPNGLKHKFLNS 90 (375)
T ss_pred eeeEEEEECCEEEEeccCC------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHccCCCcchHHHHhc
Confidence 4578999999999998741 2568999999999 999999999965311 000
Q ss_pred ---cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHH
Q 013050 59 ---EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLN 130 (450)
Q Consensus 59 ---~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 130 (450)
+. ......+++++|||+++|+. .. ....+....+... ...++....+..... .....+.+++..+
T Consensus 91 ~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~-----~~~~~~~~~~a~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 163 (375)
T PRK07213 91 CSDKELVEGMKEGLYDMYNNGIKAFCDFR-EG-----GIKGINLLKKASS-DLPIKPIILGRPTEADENELKKEIREILK 163 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEhh-hc-----ChhHHHHHHHHHH-cCCCceEEecCCCcccchhhHHHHHHHHH
Confidence 00 12234577899999999974 11 1111222222222 222232222111111 1112233333333
Q ss_pred cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCccccccccCCCChHHHH
Q 013050 131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209 (450)
Q Consensus 131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (450)
. ..++.. .....++.+.++++++.|+++|+++.+|+.+... ........+ .
T Consensus 164 ~-~~g~~~-------~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G--------------------~ 215 (375)
T PRK07213 164 N-SDGIGL-------SGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYG--------------------M 215 (375)
T ss_pred h-cccccc-------cccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcC--------------------C
Confidence 1 112211 1223567899999999999999999999944321 111111100 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC
Q 013050 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 289 (450)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (450)
..++.+.++.- .+. .+.|+... +.+.++.+++.|+.+.. ||......
T Consensus 216 ~~v~~~~~~G~-------~~~---~i~H~~~~--~~~~i~~la~~g~~v~~--~P~sn~~l------------------- 262 (375)
T PRK07213 216 TEIERLINLGF-------KPD---FIVHATHP--SNDDLELLKENNIPVVV--CPRANASF------------------- 262 (375)
T ss_pred ChHHHHHhcCC-------CCC---EEEECCCC--CHHHHHHHHHcCCcEEE--CCcchhhh-------------------
Confidence 01222222211 002 24666542 22357777777876655 66432110
Q ss_pred hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHH
Q 013050 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 369 (450)
Q Consensus 290 ~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~ 369 (450)
......+.++++.|+.+++|||+.+.+.. . .+..+.......+++++++++|+|.|||++
T Consensus 263 ~~g~~~v~~l~~~Gv~v~lGTD~~~~~~~-~-------------------~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~ 322 (375)
T PRK07213 263 NVGLPPLNEMLEKGILLGIGTDNFMANSP-S-------------------IFREMEFIYKLYHIEPKEILKMATINGAKI 322 (375)
T ss_pred ccCCccHHHHHHCCCEEEEeeCCCCCchH-h-------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 01122356778899999999997543211 1 111111122345799999999999999999
Q ss_pred hCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeE
Q 013050 370 AGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNL 431 (450)
Q Consensus 370 lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~ 431 (450)
||+++.|+|++||+||||++|.+.+. + . ++|+...++ ..+|..||||||+
T Consensus 323 lg~~~~G~l~~G~~ADlvv~d~~~~~--p---------~-~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 323 LGLINVGLIEEGFKADFTFIKPTNIK--F---------S-KNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred hCCCCcCCcCCCCcccEEEEcCcccc--c---------c-CCchHHHhhhccCCCceEEEECCcC
Confidence 99955999999999999999975311 1 1 334444443 2479999999984
No 67
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=99.97 E-value=6.5e-29 Score=244.23 Aligned_cols=309 Identities=21% Similarity=0.212 Sum_probs=204.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
+.++|+|++|+|++|++.. +.+++|++|++|+|||||+|+|+..+.... ....+.++.+||||++++|
T Consensus 18 ~~~dI~I~~g~I~~ig~~~-------~~~viDa~G~~v~PG~ID~H~Hi~~~~~~~----~~~~~~al~~GvTtvv~~P- 85 (552)
T TIGR01178 18 IPGDIAIANGHIAGVGKYN-------GVKVIDALGEYAVPGFIDAHIHIESSMLTP----SEFAKLVLPHGVTTVVSDP- 85 (552)
T ss_pred EeeeEEEECCEEEEecCCC-------CCeEEECCCCEEEeCeEecccccCCCCCCh----hHHHHHHHCCCEEEEEcCC-
Confidence 3568999999999998641 458999999999999999999998765432 2234567999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc-C-----CCcc--chHHHHHHHH-cCCcEEEEecccCCCCCCCCCC
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-P-----ENAY--NASALEALLN-AGVLGLKSFMCPSGINDFPMTN 152 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~--~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 152 (450)
+..+.....+.+....+.+. ..++++....... + .+.. ..+++.++.+ .|+.+++.++.+++. ...
T Consensus 86 ~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke~m~~~~v----~~~ 160 (552)
T TIGR01178 86 HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAEVMDYPGV----INA 160 (552)
T ss_pred CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEEEecchhh----cCC
Confidence 66666677888887777665 5577765443311 1 1112 3677888886 599999999977542 234
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050 153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232 (450)
Q Consensus 153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (450)
.+.+.+.++.+++.|+.+..|++.... ..+..+... |..
T Consensus 161 d~~~l~~i~~a~~~g~~I~gHap~l~~---------------------------------~eL~~~~~a--------Gi~ 199 (552)
T TIGR01178 161 DIEMLNKINSARKRNKVIDGHCPGLSG---------------------------------KLLNKYISA--------GIS 199 (552)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCCCH---------------------------------HHHHHHHHc--------CCC
Confidence 555666668999999999999953221 112222221 322
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHH--hcCCeeEEcC
Q 013050 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL--MDGHIDMLSS 310 (450)
Q Consensus 233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~~gt 310 (450)
..|.. .+.+...+..++|..+.. .... ...+...+..++ ..+..++++|
T Consensus 200 --~dHe~---~s~~ea~e~~~~Gm~~~i--r~gs----------------------~~~n~~~~~~~~~~~~~~~~~l~T 250 (552)
T TIGR01178 200 --NDHES---TSIEEAREKLRLGMKLMI--REGS----------------------AAKNLEALHPLINEKNCRSLMLCT 250 (552)
T ss_pred --CCcCc---CCHHHHHHHHHCCCEEEE--eCCc----------------------cccCHHHHHHHHhhcCCceEEEEe
Confidence 35544 344455555566654432 1100 001111122212 2457899999
Q ss_pred CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEe
Q 013050 311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 390 (450)
Q Consensus 311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d 390 (450)
|... + ..++.. ..+...++.+.+.|+++++|++|+|.|||+++|+++.|+|+||+.|||+++|
T Consensus 251 D~~~--~-~~~~~~--------------g~l~~~v~~ai~~g~~~~~Al~maT~npA~~lgl~~~G~I~pG~~ADlvvl~ 313 (552)
T TIGR01178 251 DDRH--V-NDILNE--------------GHINHIVRRAIEHGVDPFDALQMASINPAEHFGIDVGGLIAPGDPADFVILK 313 (552)
T ss_pred CCCC--h-hHHHhc--------------CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEEC
Confidence 9421 1 111110 1133444555567999999999999999999999658999999999999999
Q ss_pred CCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-----Cccc
Q 013050 391 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-----GNHA 439 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-----g~~~ 439 (450)
... ..++..||++|++|.++ |+.+
T Consensus 314 ~l~-------------------------~~~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 314 DLR-------------------------NFKVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred CCC-------------------------CceEEEEEECCEEEcccccccCCccc
Confidence 311 02788999999999998 7743
No 68
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.97 E-value=2e-29 Score=246.83 Aligned_cols=348 Identities=17% Similarity=0.146 Sum_probs=191.1
Q ss_pred cceeEEEeC-CEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--------------CCcccc------
Q 013050 2 CKRAVEIKE-GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--------------RTEWEG------ 60 (450)
Q Consensus 2 ~~~~V~I~~-g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--------------~~~~~~------ 60 (450)
.+++|+|+| |+|++|++.... +. .+..|++|||||||+|+|+.... +..|-.
T Consensus 18 ~~~~v~i~~~grI~~vg~~~~~----~~---~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~ 90 (456)
T PRK09229 18 RNVRLTVDADGRIAAVEPGAAP----AG---AERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQDSFWSWRELMYRFA 90 (456)
T ss_pred cCcEEEEecCCeEEEecCCCCC----cc---ccccCcEEccCcccccccHhhHhhcCcccccCCCCCChHHHHHHHHHHH
Confidence 467999999 999999985421 12 34589999999999999985220 001100
Q ss_pred -------h----HHHHHHHHhCCceEEEeCCCCCCC------CCCcHHHHHHHHHHHhcCCceEEE----Ee--ccc---
Q 013050 61 -------F----PSGTKAAAAGGITTLIDMPLNSDP------STISTETLKLKVDAAEKRIYVDVG----FW--GGL--- 114 (450)
Q Consensus 61 -------~----~~~~~~~~~~GvT~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~--- 114 (450)
. .....+++.+|||++.++. ...+ ............+.... ..++.. .+ ...
T Consensus 91 ~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~e-~GiR~~~~~~~~~~~~~~~~ 168 (456)
T PRK09229 91 LRLTPDQLEAIARQLYVEMLEAGYTSVGEFH-YLHHDPDGTPYADPAEMALRIVAAARA-AGIGLTLLPVLYAHSGFGGQ 168 (456)
T ss_pred HhCCHHHHHHHHHHHHHHHHhhCCcEEEeee-eeccCCCCCccCChHHHHHHHHHHHHH-cCCEEEeceeeeecCCCCCC
Confidence 0 1123477899999999874 1111 11112222333333322 122211 11 100
Q ss_pred cCCC------c--c-chHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhh
Q 013050 115 VPEN------A--Y-NASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSER 182 (450)
Q Consensus 115 ~~~~------~--~-~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~ 182 (450)
.... . + ..+..+++.+ .+...+...+++. ....++++.++++++.| ++|+++.+|+.+ ...+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~ 244 (456)
T PRK09229 169 PPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPH---SLRAVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDD 244 (456)
T ss_pred CCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCC---CCCCCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHH
Confidence 0000 0 0 1112222322 1112233333332 22367899999999999 999999999943 222222
Q ss_pred hhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEec
Q 013050 183 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 262 (450)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~ 262 (450)
+....+ .. .++.+.+.. .-+.++.+.|+... +.+.++.+++.|+.+..
T Consensus 245 ~~~~~g-------------~~-------~~~~l~~~g--------~l~~~~~l~H~~~l--~~~d~~~la~~g~~v~~-- 292 (456)
T PRK09229 245 CLAWSG-------------AR-------PVEWLLDHA--------PVDARWCLVHATHL--TDAETARLARSGAVAGL-- 292 (456)
T ss_pred HHHHcC-------------CC-------HHHHHHHcC--------CCCCCeEEEeeccC--CHHHHHHHHHcCCeEEE--
Confidence 221111 00 011111111 11455666777652 33456666777765554
Q ss_pred CcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC-ChhhhcccCCCccccCCCCcchhhHH
Q 013050 263 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEGNFLKAWGGISSLQFVL 341 (450)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (450)
||.....- + ....++.++++.|+.+++|||+... +....+ ..
T Consensus 293 ~P~sn~~l-------g------------~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~------------------~~ 335 (456)
T PRK09229 293 CPTTEANL-------G------------DGIFPAVDYLAAGGRFGIGSDSHVSIDLVEEL------------------RL 335 (456)
T ss_pred Cchhhhhh-------c------------CCCCCHHHHHHCCCeEEEecCCCCCCCHHHHH------------------HH
Confidence 77532110 0 0112245678899999999996432 111111 01
Q ss_pred HHHHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcc
Q 013050 342 PVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 411 (450)
Q Consensus 342 ~~~~~~~~----------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~ 411 (450)
....+... +..++++++|+|+|.|||+++|+ +.|+|++||+|||||+|.+.+...+. .. ..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~-~~GsLe~Gk~ADlvvld~~~~~~~~~-------~~-~~ 406 (456)
T PRK09229 336 LEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR-AIGGLAVGARADLVVLDLDHPALAGR-------EG-DA 406 (456)
T ss_pred HHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC-CcCCcCCCCccCEEEEeCCCccccCC-------Ch-hh
Confidence 11111110 13568999999999999999999 69999999999999999876322110 00 11
Q ss_pred ccCCceE---eeEEEEEEECCeEEEecCcccC
Q 013050 412 AYLGRRL---SGKVLATISRGNLVYKEGNHAP 440 (450)
Q Consensus 412 ~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~ 440 (450)
|+...++ ..+|..|||+|++||++|+++.
T Consensus 407 ~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~d 438 (456)
T PRK09229 407 LLDRWVFAGGDAAVRDVWVAGRWVVRDGRHRL 438 (456)
T ss_pred HHHHHhhcCCCCCeeEEEECCEEEEECCccCC
Confidence 2221221 2479999999999999998764
No 69
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.97 E-value=3e-29 Score=244.77 Aligned_cols=352 Identities=16% Similarity=0.127 Sum_probs=189.8
Q ss_pred cceeEEEe-CCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CC-----------Cccc-------
Q 013050 2 CKRAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR-----------TEWE------- 59 (450)
Q Consensus 2 ~~~~V~I~-~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~-----------~~~~------- 59 (450)
..++|+|+ ||+|++|++..... +.. +..|++|||||||+|+|+... +. ..|.
T Consensus 17 ~~~~i~I~~~g~I~~vg~~~~~~---~~~---~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~ 90 (455)
T TIGR02022 17 EGVRIAVAADGRILAIETGVPAA---PGA---ERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSFWTWRELMYRFV 90 (455)
T ss_pred cCceEEEecCCEEEEecCCCCcc---ccc---ccCCCEEccCCcccCcchhhHhhcCCcccccCCCCCHHHHHHHHHHHH
Confidence 35699999 99999999854321 122 235889999999999999542 10 0110
Q ss_pred ------ch----HHHHHHHHhCCceEEEeCCCCCCC------CCCcHHHHHHHHHHHhcC-CceEEE--Eecc-----cc
Q 013050 60 ------GF----PSGTKAAAAGGITTLIDMPLNSDP------STISTETLKLKVDAAEKR-IYVDVG--FWGG-----LV 115 (450)
Q Consensus 60 ------~~----~~~~~~~~~~GvT~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----~~ 115 (450)
++ .....+++++||||+.++. ...+ ............+..... ....+. .+.. ..
T Consensus 91 ~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~~~~~~~~~~~~ 169 (455)
T TIGR02022 91 DRLTPEQLQAIARQLYVEMLEAGFTRVGEFH-YLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPVFYAHSGFGGAA 169 (455)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCEEEeee-eecccCCCccccchhhhHHHHHHHHHHhCCeEEeeeeeeecCCCCCCC
Confidence 01 1123377899999999973 1111 111112222333333221 111111 1110 11
Q ss_pred CCC---------ccchHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhh
Q 013050 116 PEN---------AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERH 183 (450)
Q Consensus 116 ~~~---------~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~ 183 (450)
... ....+.+..+.+ .+...+....++. ....++.+.++++.+ ++++|+++.+|+.+ .......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~ 245 (455)
T TIGR02022 170 PNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPH---SLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDC 245 (455)
T ss_pred CcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecC---CCCcCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHH
Confidence 100 001111222222 1111233323332 223578899999998 88999999999943 2221111
Q ss_pred hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecC
Q 013050 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 263 (450)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~ 263 (450)
....+ . ..++.+.++.. -+.++.+.|+... +.+.++.+++.|..+.. |
T Consensus 246 ~~~~G--------------~------~~v~~l~~~g~--------l~~~~~~~H~~~l--~~~d~~~la~~g~~v~~--~ 293 (455)
T TIGR02022 246 LAWSG--------------R------RPVEWLLDHGP--------VDARWCLVHATHL--TDEETALLARSGAVAGL--C 293 (455)
T ss_pred HHHhC--------------C------CHHHHHHHcCC--------CCCCEEEEEeecC--CHHHHHHHHHcCCeEEE--C
Confidence 11111 0 01122222211 1445556666542 22356666677765554 7
Q ss_pred cchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHH
Q 013050 264 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPV 343 (450)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (450)
|.....- + ....++.++++.|+.+++|||+.+...... +.....
T Consensus 294 P~sn~~l-------g------------~g~~pi~~l~~~Gv~v~lGTD~~~~~d~~~-----------------~m~~a~ 337 (455)
T TIGR02022 294 PTTEANL-------G------------DGIFPAVDFVAAGGRFGIGSDSHVVIDVAE-----------------ELRQLE 337 (455)
T ss_pred hhhhccc-------c------------CCCCCHHHHHHCCCeEEEECCCCCCCCHHH-----------------HHHHHH
Confidence 7532110 0 111234567889999999999643211110 011111
Q ss_pred HHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc
Q 013050 344 TWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 413 (450)
Q Consensus 344 ~~~~~~----------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (450)
..+... ...++++++++|+|.|||++||+ +.|+|++||+|||||+|.+.+...+.. . ..|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~~GsLe~Gk~ADlvvld~~~~~~~~~~-------~-~~~~ 408 (455)
T TIGR02022 338 YGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-ATGGLRAGARADFLTLDGDHPYLAGAL-------G-DSLL 408 (455)
T ss_pred HHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCcCEEEEeCCCcccCCCC-------c-hhHH
Confidence 111111 12467889999999999999999 599999999999999998754332210 0 1111
Q ss_pred CCceE---eeEEEEEEECCeEEEecCcccCC
Q 013050 414 LGRRL---SGKVLATISRGNLVYKEGNHAPA 441 (450)
Q Consensus 414 ~~~~~---~~~v~~v~v~G~~v~~~g~~~~~ 441 (450)
...++ ..+|..|||+|++||++|+++..
T Consensus 409 ~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~ 439 (455)
T TIGR02022 409 DRWLFAGGGAAVRDVWVGGRWVVRDGRHALR 439 (455)
T ss_pred HHHhhcCCCCCccEEEECCEEEEECCccccH
Confidence 11121 24799999999999999999854
No 70
>PRK09356 imidazolonepropionase; Validated
Probab=99.97 E-value=4e-29 Score=242.45 Aligned_cols=326 Identities=21% Similarity=0.261 Sum_probs=185.5
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------cc-----------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------WE----------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------~~----------- 59 (450)
.+++|+|+||||++|++..+.+. ....++||+.|++|||||||+|+|+....... +.
T Consensus 27 ~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (406)
T PRK09356 27 EDGAIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLIDCHTHLVFGGNRANEFELRLQGVSYEEIAAQGGGILS 105 (406)
T ss_pred cCcEEEEECCEEEEEeCcccccc-ccCceEEECCCCEEeeceEecCCCcccCCCcHHHHHHHHCCCcHHHHHHhcCChHH
Confidence 36789999999999998654322 12368999999999999999999997532110 00
Q ss_pred -----------ch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEE--Eec--cccCCC-c
Q 013050 60 -----------GF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG--FWG--GLVPEN-A 119 (450)
Q Consensus 60 -----------~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~-~ 119 (450)
.+ .....+++++|||++.++. ................+.......+.+. ..+ ...... .
T Consensus 106 ~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK09356 106 TVRATRAASEEELFAQALPRLDALLAEGVTTVEIKS-GYGLDLETELKMLRVARRLGEEHPVDVVTTFLGAHAVPPEYKG 184 (406)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeec-cCCCCHHHHHHHHHHHHHHhhhCCCceEeeeeecccCCccccC
Confidence 00 1123467899999999863 1110000111111112222222212221 111 011110 0
Q ss_pred ---cchHHH-HHHHH-----cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCc
Q 013050 120 ---YNASAL-EALLN-----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 190 (450)
Q Consensus 120 ---~~~~~~-~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 190 (450)
...+.. .++.+ .++..++.+... ...+.+.++++++.|+++|+++.+|+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~----------- 247 (406)
T PRK09356 185 RPDAYIDLVCEEMLPAVAEEGLADAVDVFCET------GAFSVEQSERVLEAAKALGLPVKIHAEQLSN----------- 247 (406)
T ss_pred CHHHHHHHHHHHHhHHHHhcCCcceEEEEecC------CCCCHHHHHHHHHHHHHCCCCEEEEEecccC-----------
Confidence 111111 11221 234444433211 2467899999999999999999999943110
Q ss_pred CCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc
Q 013050 191 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 270 (450)
Q Consensus 191 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 270 (450)
...+.... .. + ...+.|+... +.+.++.+++.|+.+.+ ||......
T Consensus 248 ------------------~~~~~~~~----~~-------~-~~~~~H~~~~--~~~~~~~la~~g~~~~~--~P~~~~~l 293 (406)
T PRK09356 248 ------------------LGGAELAA----EY-------G-ALSADHLEYL--DEAGIAAMAEAGTVAVL--LPGAFYFL 293 (406)
T ss_pred ------------------CCHHHHHH----Hc-------C-CcEehHhhcC--CHHHHHHHHHhCCEEEE--Cccchhhc
Confidence 00011111 11 1 1234455442 22356666667765443 66532210
Q ss_pred ccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCC-CChhhhcccCCCccccCCCCcchhhHHHHHHHH-H
Q 013050 271 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G 348 (450)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~ 348 (450)
+. .....+.++++.|+.+++|||+.+ .++.. .+...... .
T Consensus 294 -----------------~~-~~~~~~~~l~~~Gi~v~lgtD~~~~~~~~~--------------------~~~~~~~~~~ 335 (406)
T PRK09356 294 -----------------RE-TQYPPARLLRDAGVPVALATDFNPGSSPTE--------------------SLLLAMNMAC 335 (406)
T ss_pred -----------------Cc-ccCchHHHHHHCCCeEEEeCCCCCCCChhH--------------------HHHHHHHHHh
Confidence 00 011234566788999999999754 21111 12222222 2
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEE
Q 013050 349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427 (450)
Q Consensus 349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v 427 (450)
...+++++++++++|.|||+++|+ +++|+|++||.|||+++|.+++..+. .. ....+|..||+
T Consensus 336 ~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~------~~----------~~~~~v~~v~v 399 (406)
T PRK09356 336 TLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELP------YH----------FGVNPVETVVK 399 (406)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhh------hh----------hCCCCccEEEE
Confidence 356899999999999999999999 67899999999999999987532111 00 01248999999
Q ss_pred CCeEEEe
Q 013050 428 RGNLVYK 434 (450)
Q Consensus 428 ~G~~v~~ 434 (450)
+|++||+
T Consensus 400 ~G~~vy~ 406 (406)
T PRK09356 400 NGEVVVD 406 (406)
T ss_pred CCEEeeC
Confidence 9999985
No 71
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.97 E-value=3.9e-29 Score=240.25 Aligned_cols=324 Identities=19% Similarity=0.166 Sum_probs=184.4
Q ss_pred CcceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc--------------c--------
Q 013050 1 MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------------W-------- 58 (450)
Q Consensus 1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~--------------~-------- 58 (450)
+.+++|+|+||+|++|++....+. +.+.++||++|++|||||||+|+|+....... |
T Consensus 1 ~~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (377)
T TIGR01224 1 IEDAVILIHGGKIVWIGQLAALPG-EEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGIL 79 (377)
T ss_pred CCceEEEEECCEEEEEechhhCCc-ccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChH
Confidence 468999999999999998533221 23568999999999999999999997432110 0
Q ss_pred -----------cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe-c---cccCC--
Q 013050 59 -----------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW-G---GLVPE-- 117 (450)
Q Consensus 59 -----------~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-- 117 (450)
++ ......+++++|+|++.... ...........+....+.+..+..+.+... . .....
T Consensus 80 ~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~-~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~ 158 (377)
T TIGR01224 80 STVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKS-GYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQ 158 (377)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecc-cCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccc
Confidence 00 01123477899999994321 110000101122223333322222222211 0 11111
Q ss_pred Cc--cchH-----HHHHHHHcC-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccC
Q 013050 118 NA--YNAS-----ALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 189 (450)
Q Consensus 118 ~~--~~~~-----~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 189 (450)
.. +..+ .+++..+.+ +.+++.+... ...+.+.+.++++.|+++|+++.+|+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~---------- 222 (377)
T TIGR01224 159 GRPDDYVDGICEELIPQVAEEGLASFADVFCEA------GVFSVEQSRRILQAAQEAGLPVKLHAEELSN---------- 222 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecC------CCcCHHHHHHHHHHHHHCCCCEEEEecCCCC----------
Confidence 00 0111 122222223 5555433211 2356789999999999999999999943210
Q ss_pred cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050 190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 269 (450)
Q Consensus 190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 269 (450)
+ ..+..+.. . + ...+.|+.. -+.+.++.+++.|+.+.. ||.....
T Consensus 223 --------------~-----~~~~~~~~----~-------g-~~~~~H~~~--~~~~~l~~la~~g~~~~~--~P~~~~~ 267 (377)
T TIGR01224 223 --------------L-----GGAELAAK----L-------G-AVSADHLEH--ASDAGIKALAEAGTVAVL--LPGTTFY 267 (377)
T ss_pred --------------C-----CHHHHHHH----c-------C-CCccHHHhc--CCHHHHHHHHhcCCEEEE--CchHHHh
Confidence 0 01111111 1 1 112234433 123456677777765544 7754322
Q ss_pred cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCC-CChhhhcccCCCccccCCCCcchhhHHHHHHHHH
Q 013050 270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 348 (450)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (450)
.. .....+.++++.|+.+++|||+.| .++... .........
T Consensus 268 l~-------------------~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~-------------------~~~~~~~~~ 309 (377)
T TIGR01224 268 LR-------------------ETYPPARQLIDYGVPVALATDLNPGSSPTLS-------------------MQLIMSLAC 309 (377)
T ss_pred cC-------------------CcCccHHHHHHCCCCEEEECCCCCCCChhHH-------------------HHHHHHHHH
Confidence 11 011224566789999999999754 322111 111111123
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEE
Q 013050 349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427 (450)
Q Consensus 349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v 427 (450)
...++|++++++++|.|||+++|+ ++.|+|++||.|||||+|.+++..+. +. ....+|..||+
T Consensus 310 ~~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~------~~----------~~~~~v~~v~v 373 (377)
T TIGR01224 310 RLMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIP------YH----------YGVNHVHAVIK 373 (377)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhh------hh----------cCCCCceEEEE
Confidence 456899999999999999999999 56899999999999999988643221 00 00137999999
Q ss_pred CCeE
Q 013050 428 RGNL 431 (450)
Q Consensus 428 ~G~~ 431 (450)
+|++
T Consensus 374 ~G~~ 377 (377)
T TIGR01224 374 NGNI 377 (377)
T ss_pred CCCC
Confidence 9984
No 72
>PRK05451 dihydroorotase; Provisional
Probab=99.97 E-value=3e-28 Score=228.42 Aligned_cols=327 Identities=18% Similarity=0.209 Sum_probs=236.9
Q ss_pred EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--ceEEEEecccc
Q 013050 38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV 115 (450)
Q Consensus 38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 115 (450)
+-+|--||+|+|+... ..+ +++.++++ +++|++++++ +..|.....+.+......+.... .+++..++.+.
T Consensus 5 ~~~~~~~d~h~hl~~~-~~~-~~~~~~~~----~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~ 77 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG-AML-KAVVPYTA----RQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLY 77 (345)
T ss_pred EEecCcceEEEecCCc-hHH-HHHHHHHH----HhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEE
Confidence 5678899999999864 221 23444443 5699999998 77777777777777777665542 35677666665
Q ss_pred CCCccchHHHHHHHHcCC-cEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050 116 PENAYNASALEALLNAGV-LGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 193 (450)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 193 (450)
.......+++.++.+.|+ .++|.|+.+.... .....+.+.+.++++.++++|++|.+|+++.... ...
T Consensus 78 ~~~~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~----------~~~ 147 (345)
T PRK05451 78 LTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPD----------IDI 147 (345)
T ss_pred eCCCCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcc----------ccc
Confidence 544445788888888995 4999987542111 1112367889999999999999999999763320 000
Q ss_pred cccccccCCCChHHHHHHHHHH-HHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050 194 RSYSTYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 272 (450)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 272 (450)
. ..+...+.+. ..++++ +++.++|+.|+++. ++++.++++ +..+++++||||+.++.+
T Consensus 148 ~-----------~~e~~~~~~~l~~lA~~------~pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~ 206 (345)
T PRK05451 148 F-----------DREAVFIDRVLEPLRRR------FPKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRN 206 (345)
T ss_pred c-----------cchHHHHHHHHHHHHHh------cCCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHH
Confidence 0 0122234444 446643 45899999999998 888888775 558999999999999988
Q ss_pred ccC--CCCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhh---HHHHHHH
Q 013050 273 EIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWS 346 (450)
Q Consensus 273 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~ 346 (450)
.+. ..+..++++||+|...+++.||+++.+|... +++|||+|+....+.. +.|..++.. .++.+..
T Consensus 207 ~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~--------~~G~~gi~~~~~g~~~~~~ 278 (345)
T PRK05451 207 DMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKES--------ACGCAGIFSAPAALELYAE 278 (345)
T ss_pred HHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCC--------CCCCCchhhHHHHHHHHHH
Confidence 764 3467799999999999999999999999999 8999999998777632 223333333 3454444
Q ss_pred HHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc-CCceEeeEEE
Q 013050 347 YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 423 (450)
Q Consensus 347 ~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 423 (450)
.+... .++++++++.+.|||++||+ +++|+|.+| +..|++... .+.+... ++|| .|..+.++|.
T Consensus 279 ~~~~~-~~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~-~~~s~~~-~sp~~~~~~~~~~~~ 344 (345)
T PRK05451 279 VFEEA-GALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPES-IPFGDET-VVPFRAGETLRWSVK 344 (345)
T ss_pred HHHcC-CCHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcc-cccCCCc-eeeecCCceeeeEec
Confidence 44444 49999999999999999999 889999877 466888877 6777777 8888 4666666553
No 73
>PRK09237 dihydroorotase; Provisional
Probab=99.97 E-value=6.6e-28 Score=231.27 Aligned_cols=337 Identities=18% Similarity=0.226 Sum_probs=199.6
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.++|+|++|||++|++..+.+ .+.++||++|++|+|||||+|+|+.... ...+ ....+.++.+||||+++++ .
T Consensus 18 ~~~v~i~~g~I~~v~~~~~~~---~~~~~iD~~g~~v~PG~iD~H~H~~~~~-~~~~--~~~~~~~~~~G~Ttv~~~~-~ 90 (380)
T PRK09237 18 VIDIAIEDGKIAAVAGDIDGS---QAKKVIDLSGLYVSPGWIDLHVHVYPGS-TPYG--DEPDEVGVRSGVTTVVDAG-S 90 (380)
T ss_pred ceEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEEeeecCCCCC-CccC--CCHHHHHHhCCcCEEEECC-C
Confidence 478999999999998764322 2568999999999999999999997543 2211 2556788999999999987 4
Q ss_pred CCCCCCcHHHHHHHHHHH-hc--CCceEEEEeccccCCCc-----cchHHHHHHHH---cCCcEEEEecccCCCCCCCCC
Q 013050 83 SDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVPENA-----YNASALEALLN---AGVLGLKSFMCPSGINDFPMT 151 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~ 151 (450)
.. ....+.+....... .. ...+++..++....... -..+.+.++.. .++.+++.++.++... ..
T Consensus 91 ~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~---~~ 165 (380)
T PRK09237 91 AG--ADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKARMSSSVVG---DN 165 (380)
T ss_pred CC--CCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEEEEeccccc---cc
Confidence 32 24455555444433 11 22333344433322111 23456666665 5799999887553211 11
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050 152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 231 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (450)
..+..+.....+++.|+++.+|+++... ...++..+...- ..
T Consensus 166 ~~~~~~~~~~~a~~~g~~v~~H~~~~~~-------------------------------~~~~l~~~l~~g-------~~ 207 (380)
T PRK09237 166 GIEPLELAKAIAAEANLPLMVHIGNPPP-------------------------------SLEEILELLRPG-------DI 207 (380)
T ss_pred CCchHHHHHHHHHhcCCCEEEEcCCCCC-------------------------------CHHHHHhhccCC-------CE
Confidence 1133344455566899999999965431 012333333210 22
Q ss_pred eEEEEecCC------hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC-
Q 013050 232 HLHIVHLSD------ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH- 304 (450)
Q Consensus 232 ~~~~~h~~~------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~- 304 (450)
..|+.+... .....+.+.++.++|..+.. ..... ........++++.|+
T Consensus 208 ~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~i--g~g~~----------------------~~~~~~~~~l~~~g~~ 263 (380)
T PRK09237 208 LTHCFNGKPNRILDEDGELRPSVLEALERGVRLDV--GHGTA----------------------SFSFKVAEAAIAAGIL 263 (380)
T ss_pred EEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEe--cCCCC----------------------cccHHHHHHHHHCCCC
Confidence 333333322 01233566666666643332 11000 001112234456674
Q ss_pred eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCc
Q 013050 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHA 384 (450)
Q Consensus 305 ~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~A 384 (450)
..+++||..+.+. .......+...+..+.+.|++++++++++|.|||+++|+++.|+|++|+.|
T Consensus 264 ~~~l~tD~~~~~~----------------~~~~~~~l~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~~G~l~~G~~A 327 (380)
T PRK09237 264 PDTISTDIYCRNR----------------INGPVYSLATVMSKFLALGMPLEEVIAAVTKNAADALRLPELGRLQVGSDA 327 (380)
T ss_pred ceEEECCCCCCCc----------------ccchHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCCCcCCCCCcC
Confidence 4589999755321 001111233344445567999999999999999999999668999999999
Q ss_pred cEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcccC
Q 013050 385 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP 440 (450)
Q Consensus 385 Dlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~ 440 (450)
||++++.+... ... ..+....+. ...|+.|||+||+||.+-..++
T Consensus 328 Dlvv~~~~~~~-~~~----------~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~~ 375 (380)
T PRK09237 328 DLTLFTLKDGP-FTL----------TDSEGDSLIGERLLTPLATVRGGKVVLTEQGSAE 375 (380)
T ss_pred CEEEEeCCCCC-ccc----------cCCCCCEEEecCCCcceEEEECCEEEEccCcccc
Confidence 99999965422 110 111111221 1479999999999998766554
No 74
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.97 E-value=6.1e-29 Score=240.45 Aligned_cols=339 Identities=17% Similarity=0.156 Sum_probs=187.2
Q ss_pred cceeE-EEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CC--------C---cc--------
Q 013050 2 CKRAV-EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR--------T---EW-------- 58 (450)
Q Consensus 2 ~~~~V-~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~--------~---~~-------- 58 (450)
.+++| +|+||+|++||+... .++||+.|++|+|||||+|+|+... +. . .|
T Consensus 9 ~~~~i~~v~~g~I~~Vg~~~~-------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~ 81 (418)
T cd01313 9 RNVRIEVDADGRIAAVNPDTA-------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYRFA 81 (418)
T ss_pred cCeEEEEeCCCeEEEecCCCC-------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHHHH
Confidence 46899 999999999997532 2469999999999999999999642 10 0 01
Q ss_pred -----cch----HHHHHHHHhCCceEEEeCCCCCCCCC------CcHHHHHHHHHHHhc---CCceEEEEec--ccc-CC
Q 013050 59 -----EGF----PSGTKAAAAGGITTLIDMPLNSDPST------ISTETLKLKVDAAEK---RIYVDVGFWG--GLV-PE 117 (450)
Q Consensus 59 -----~~~----~~~~~~~~~~GvT~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~-~~ 117 (450)
+.+ .....+++++|||+++++. ...+.. ..........+.... +..+....+. ... ..
T Consensus 82 ~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~~ 160 (418)
T cd01313 82 ARLTPEQIEAIARQLYIEMLLAGITAVGEFH-YVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPA 160 (418)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCEEEEee-eeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCCC
Confidence 001 1223377899999999974 111100 001111222222221 1111111111 000 00
Q ss_pred -C-------c---cchHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhh
Q 013050 118 -N-------A---YNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERH 183 (450)
Q Consensus 118 -~-------~---~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~ 183 (450)
. . +..+.+.++++ .....+....++.. ...++++.++++++.|++ |+++.+|+.+ ...+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~ 236 (418)
T cd01313 161 PNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHS---LRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDC 236 (418)
T ss_pred CchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCC---CCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHH
Confidence 0 0 11112222211 01112333333321 135789999999999999 9999999943 2211111
Q ss_pred hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecC
Q 013050 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 263 (450)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~ 263 (450)
....+ . ..++.+.+.. .-+.++.+.|+... +.+.++.+++.|..+.. |
T Consensus 237 ~~~~g--------------~------~~i~~l~~~g--------~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~~--~ 284 (418)
T cd01313 237 LAAHG--------------R------RPVELLLDHG--------HLDARWCLVHATHL--TDNETLLLGRSGAVVGL--C 284 (418)
T ss_pred HHHcC--------------C------CHHHHHHHcC--------CCCCCEEEEeCCCC--CHHHHHHHHHcCCEEEE--C
Confidence 11100 0 0112222211 11556777787763 23457777777765555 7
Q ss_pred cchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCC-hhhhcccCCCccccCCCCcchhhHHH
Q 013050 264 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV-PELKLLDEGNFLKAWGGISSLQFVLP 342 (450)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (450)
|.....-. .....+.++++.|+.+++|||+.... ....+ ...
T Consensus 285 P~sn~~lg-------------------~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~------------------~~~ 327 (418)
T cd01313 285 PTTEANLG-------------------DGIFPAAALLAAGGRIGIGSDSNARIDLLEEL------------------RQL 327 (418)
T ss_pred CCchhhcc-------------------CCCCCHHHHHHCCCcEEEecCCCCCcCHHHHH------------------HHH
Confidence 75432110 01113456688999999999964321 11110 011
Q ss_pred HHHHHHH---------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc
Q 013050 343 VTWSYGR---------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 413 (450)
Q Consensus 343 ~~~~~~~---------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~ 413 (450)
...+... ...++++++|+++|.|||+++|++ .|+|++||+|||||+|.+.++..+.. . ++|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~-~Gsle~Gk~ADlvvld~~~~~~~p~~-------~-~~~~ 398 (418)
T cd01313 328 EYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA-TGALEAGARADLLSLDLDHPSLAGAL-------P-DTLL 398 (418)
T ss_pred HHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC-CCeECCCCccCEEEEcCCCccccCCC-------c-hhHH
Confidence 1111111 237999999999999999999997 99999999999999998865443220 0 1233
Q ss_pred CCceE---eeEEEEEEECCe
Q 013050 414 LGRRL---SGKVLATISRGN 430 (450)
Q Consensus 414 ~~~~~---~~~v~~v~v~G~ 430 (450)
...++ ..+|+.|||+|+
T Consensus 399 ~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 399 DAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred HHHeecCCCCceeEEEeCCC
Confidence 33333 247999999996
No 75
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.97 E-value=2.1e-28 Score=238.22 Aligned_cols=347 Identities=20% Similarity=0.198 Sum_probs=204.3
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-------------------------
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------------------------- 57 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~------------------------- 57 (450)
.++|.|+||||++|++....+ .+.++||++|++|+|||||+|+|+.......
T Consensus 40 ~~~i~i~dg~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~id~H~Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (438)
T PRK07583 40 LVDIEIADGKIAAILPAGGAP---DELPAVDLKGRMVWPCFVDMHTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWS 116 (438)
T ss_pred EEEEEEECCEEEEEecCCCCC---CCCceecCCCCcccCCcccceeccccceecCCCCCCCCCHHHHHHHHHHHhhccCC
Confidence 569999999999999875422 2568999999999999999999985531000
Q ss_pred ccc----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-
Q 013050 58 WEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN- 130 (450)
Q Consensus 58 ~~~----~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (450)
.++ +....+.++..|+|+++.+. ...+. ....+.+....+..............+.........+++.+.+.
T Consensus 117 ~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~eL~~~v~~ 195 (438)
T PRK07583 117 AEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAISWEVFAELREAWAGRIALQAVSLVPLDAYLTDAGERLADLVAE 195 (438)
T ss_pred HHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCcccHHHHHHHHHHHhhccCeEEEEEecChhhccCchHHHHHHHHHH
Confidence 112 44456678889999887764 32211 22233333333333333222222211111111122245555543
Q ss_pred c-CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHH
Q 013050 131 A-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209 (450)
Q Consensus 131 ~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (450)
. |+.+.+.+.. ....+.+.++++.|+++|+++.+|+.+... +. .
T Consensus 196 ~~gv~g~~~~~~--------~~~d~~l~~i~~lA~~~G~~v~vH~~E~~~------------------------~~---~ 240 (438)
T PRK07583 196 AGGLLGGVTYMN--------PDLDAQLDRLFRLARERGLDLDLHVDETGD------------------------PA---S 240 (438)
T ss_pred cCCEEeCCCCCC--------CCHHHHHHHHHHHHHHhCCCcEEeECCCCC------------------------ch---H
Confidence 3 4555443321 125588999999999999999999943221 00 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA 284 (450)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (450)
..+....+.+.+. ++ ..++++.|+... ....+.++.+++.|+.++. ||........... ...
T Consensus 241 ~~l~~~~~~~~~~---G~--~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~--~P~~~~~l~~~~~------~~~ 307 (438)
T PRK07583 241 RTLKAVAEAALRN---GF--EGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVS--LPMCNLYLQDRQP------GRT 307 (438)
T ss_pred HHHHHHHHHHHHh---CC--CCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEE--CcchhhhhcCCCc------CCC
Confidence 1133334433332 11 346888888642 1235778888888876665 6654322111000 001
Q ss_pred CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCC-cchhhHHHHHHHHHHhcCCCHHHHHHHHh
Q 013050 285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI-SSLQFVLPVTWSYGRKYGVTLEQLASWWS 363 (450)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~gls~~~al~~aT 363 (450)
|..+ ....+.++++.|+.+++|||+.+. . |. +.|. ...+. +.... .....+.+++++++++|
T Consensus 308 p~~~---~~~~v~~l~~aGV~valGtD~~~d-~---------~~--p~g~~~~~~~-~~~a~-~~~~~~~~~~~al~~~T 370 (438)
T PRK07583 308 PRWR---GVTLVHELKAAGIPVAVASDNCRD-P---------FY--AYGDHDMLEV-FREAV-RILHLDHPYDDWPAAVT 370 (438)
T ss_pred CCCC---CcchHHHHHHCCCeEEEEeCCCCC-C---------CC--CCCCcCHHHH-HHHHH-HHHhcCCcHHHHHHHHh
Confidence 2111 123456778889999999997531 1 11 1121 11111 11111 12234688999999999
Q ss_pred hchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 436 (450)
Q Consensus 364 ~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 436 (450)
.|||+++|+++.|+|++|+.|||||+|.++...+..+ ...+..||.+|++|....
T Consensus 371 ~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~------------------~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 371 TTPADIMGLPDLGRIAVGAPADLVLFKARSFSELLSR------------------PQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred HHHHHHcCCCCCCCcCCCCCCCEEEEcCCCHHHHHhc------------------CCCccEEEECCEEecccC
Confidence 9999999994489999999999999998864332111 125678999999987654
No 76
>PRK08418 chlorohydrolase; Provisional
Probab=99.97 E-value=8.3e-29 Score=238.09 Aligned_cols=352 Identities=17% Similarity=0.118 Sum_probs=186.4
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc-c------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW-E------------ 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~-~------------ 59 (450)
.+++|+|+ |+|++|++..+.+...++.+++|+.|++|+|||||+|+|+....+. .| .
T Consensus 20 ~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~l~~~ 98 (408)
T PRK08418 20 EDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGDFIPWLGSVINHREDLLEK 98 (408)
T ss_pred eccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCchHHHHHHHhhhhhhcCHH
Confidence 46789999 9999999753322112345689999999999999999999643111 11 0
Q ss_pred c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc----cchHH-HHHHHH
Q 013050 60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA----YNASA-LEALLN 130 (450)
Q Consensus 60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~ 130 (450)
. ......+++++||||+.++. ... . .. +... ...++............ ...+. +..+..
T Consensus 99 ~~~~~~~~~~~E~l~~GtTtv~d~~-~~~---~---~~----~a~~-~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T PRK08418 99 CKGALIQQAINEMLKSGVGTIGAIS-SFG---I---DL----EICA-KSPLRVVFFNEILGSNASAVDELYQDFLARFEE 166 (408)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEee-cch---h---hH----HHHH-hcCCeEEEEeeeeCCCccchhhhHHHHHHHHHh
Confidence 0 01123478999999999874 211 1 11 1111 22222222111110110 11111 111111
Q ss_pred ---cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhhhhhccCcCCccccccccCCCChH
Q 013050 131 ---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206 (450)
Q Consensus 131 ---~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 206 (450)
.....+...+.+ +....++++.++++.+.|+++|+++.+|..+ ....+......+.-.+... .......|..
T Consensus 167 ~~~~~~~~~~~~~ap---h~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~-~~~~~~~~~~ 242 (408)
T PRK08418 167 SKKFKSKKFIPAIAI---HSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFE-KFLKEPKPLY 242 (408)
T ss_pred hhcccCCceeEEEeC---CCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhh-hhcccccccC
Confidence 111223333322 2223678999999999999999999999954 3333322222220000000 0000000000
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 286 (450)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (450)
..++.+..+. +.+..+.|+.. -+.+.++.+++.|..+.. ||.....-+
T Consensus 243 ---~pv~~l~~~g----------~~~~~~~H~~~--~~~~di~~la~~g~~v~~--cP~sn~~lg--------------- 290 (408)
T PRK08418 243 ---TPKEFLELFK----------GLRTLFTHCVY--ASEEELEKIKSKNASITH--CPFSNRLLS--------------- 290 (408)
T ss_pred ---CHHHHHHHhC----------CCCeEEEeccc--CCHHHHHHHHHcCCcEEE--CHhHHHHhc---------------
Confidence 0122222221 22445566654 233455555566755544 775432110
Q ss_pred CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHH-HHHHHhcCCCHHHHHHHHhhc
Q 013050 287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT-WSYGRKYGVTLEQLASWWSER 365 (450)
Q Consensus 287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~gls~~~al~~aT~~ 365 (450)
.....+.++++.|+.+++|||+.+++...+++ +.+.... .........+++++++|+|.|
T Consensus 291 ----~g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~---------------~em~~~~~~~~~~~~~~~~~~~l~~aT~~ 351 (408)
T PRK08418 291 ----NKALDLEKAKKAGINYSIATDGLSSNISLSLL---------------DELRAALLTHANMPLLELAKILLLSATRY 351 (408)
T ss_pred ----CCCccHHHHHhCCCeEEEeCCCCCCCCCcCHH---------------HHHHHHHHHhccCCccccHHHHHHHHHHH
Confidence 01123457788999999999975543322211 1111000 000001113478999999999
Q ss_pred hhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 432 (450)
Q Consensus 366 ~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 432 (450)
||++||++ .|+|++||+||||++|.+.+.+- .. +.|+.......+|+.|||+|++|
T Consensus 352 gA~alg~~-~G~l~~G~~ADlv~~d~~~~~~~-~~---------~~~~~~~~~~~~v~~v~v~G~~v 407 (408)
T PRK08418 352 GAKALGLN-NGEIKEGKDADLSVFELPEECTK-KE---------QLPLQFILHAKEVKKLFIGGKEV 407 (408)
T ss_pred HHHHhCCC-CccccCCCccCEEEEeCCCCCCC-hh---------HhHHHHHhccCccceEEECCEEc
Confidence 99999995 79999999999999997632111 01 22222112235799999999987
No 77
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.97 E-value=4.5e-29 Score=237.48 Aligned_cols=343 Identities=17% Similarity=0.154 Sum_probs=184.9
Q ss_pred CEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc-c------------c----hHHH
Q 013050 11 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW-E------------G----FPSG 64 (450)
Q Consensus 11 g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~-~------------~----~~~~ 64 (450)
|+|++||+..+....++..+++|+.|++|+|||||+|+|+....+. .| . . ....
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 6999999864433223567899999999999999999999544221 11 0 0 1122
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccch-HHHHHHHH---cCCcEEEEe
Q 013050 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNA-SALEALLN---AGVLGLKSF 139 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~---~g~~~~~~~ 139 (450)
..+++++||||+.++. .. .. ..........+..+.+...+. .... .... +.+....+ ..-..+...
T Consensus 81 ~~E~l~~G~Tt~~d~~-~~------~~-~~~a~~~~GiR~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 151 (381)
T cd01312 81 IRQMLESGTTSIGAIS-SD------GS-LLPALASSGLRGVFFNEVIGS-NPSAIDFKGETFLERFKRSKSFESQLFIPA 151 (381)
T ss_pred HHHHHHhCCeEEEEec-CC------HH-HHHHHHHcCCcEEEEEeeECC-CCchhhhhHHHHHHHHHHhhccCccceEEE
Confidence 3477899999999985 21 11 111211111111122222110 1110 0111 11112211 111123333
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccc-ccc--c-cCCCChHHHHHHHHH
Q 013050 140 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRS-YST--Y-LKTRPPSWEEAAIRE 214 (450)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~-~~~--~-~~~~p~~~~~~~~~~ 214 (450)
+.+. ....++.+.++++.+.|+++++++.+|..+. ..........+...+... +.. + ..+.. .++.
T Consensus 152 ~~p~---a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~------pv~~ 222 (381)
T cd01312 152 ISPH---APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLAT------AIDF 222 (381)
T ss_pred ECCC---CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCC------HHHH
Confidence 3332 2235788999999999999999999999443 332222111100000000 000 0 00111 1222
Q ss_pred HHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHH
Q 013050 215 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 294 (450)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
+.++... +.++.+.|+... +.+.++.+++.|+.+.. ||...... + ....
T Consensus 223 l~~~g~L--------~~~~~~~H~~~l--~~~~~~~l~~~g~~v~~--~P~sn~~l-------g------------~g~~ 271 (381)
T cd01312 223 LDMLGGL--------GTRVSFVHCVYA--NLEEAEILASRGASIAL--CPRSNRLL-------N------------GGKL 271 (381)
T ss_pred HHHcCCC--------CCCcEEEECCcC--CHHHHHHHHHcCCeEEE--Ccchhhhh-------c------------CCCc
Confidence 2222111 456777888763 23466777777866555 66432110 0 0112
Q ss_pred HHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh--cCCCHHHHHHHHhhchhHHhCC
Q 013050 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 295 ~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~gls~~~al~~aT~~~A~~lg~ 372 (450)
.+.++++.|+.+++|||+...+...+++ .. +.......+. ..+++.++|+|+|.|||++||+
T Consensus 272 p~~~~~~~Gv~v~lGtD~~~~~~~~d~~---------------~~-~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~ 335 (381)
T cd01312 272 DVSELKKAGIPVSLGTDGLSSNISLSLL---------------DE-LRALLDLHPEEDLLELASELLLMATLGGARALGL 335 (381)
T ss_pred CHHHHHHCCCcEEEeCCCCccCCCCCHH---------------HH-HHHHHHhcccccccCCHHHHHHHHHHHHHHHhCC
Confidence 3567788999999999975433221111 11 1111111111 1378899999999999999999
Q ss_pred CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050 373 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 430 (450)
Q Consensus 373 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~ 430 (450)
+ .|+|++||+||||++|.+.+.. +. +.|+......++|..|||+||
T Consensus 336 ~-~Gsle~Gk~ADlvv~d~~~~~~-~~----------~~~~~~~~~~~~v~~v~v~G~ 381 (381)
T cd01312 336 N-NGEIEAGKRADFAVFELPGPGI-KE----------QAPLQFILHAKEVRHLFISGK 381 (381)
T ss_pred C-CCccCCCCcccEEEEeCCCcCC-CC----------ccHHHHHHccCCCCEEEecCC
Confidence 6 9999999999999999876411 11 122211223458999999996
No 78
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=99.97 E-value=9.9e-29 Score=238.36 Aligned_cols=338 Identities=23% Similarity=0.268 Sum_probs=201.3
Q ss_pred cceeEEEeCCEEEEeccCCCCC--CC-----CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCce
Q 013050 2 CKRAVEIKEGNIISIVSEEDWP--RN-----SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGIT 74 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~--~~-----~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT 74 (450)
++++|.|+||||++|++..++. .. ..+.++||++|++|+|||||+|+|+..+. ..+.++..|||
T Consensus 82 ~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~---------~~~aAl~gGVT 152 (567)
T TIGR01792 82 YKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISPQ---------QVQAALDNGIT 152 (567)
T ss_pred EEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCcc---------HHHHHHhCceE
Confidence 4689999999999999754321 00 13568999999999999999999986553 35788999999
Q ss_pred EEEeCCC----CCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCC
Q 013050 75 TLIDMPL----NSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF 148 (450)
Q Consensus 75 ~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (450)
++++.+. ++.+. ...........+... ...+++++++.. .....+.+.++.+.|+.+++.+..+
T Consensus 153 TmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~-~~~in~g~~g~g---~~~~~~~L~e~i~aGa~gfK~h~~y------ 222 (567)
T TIGR01792 153 TLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD-GLPINFGFTGKG---SGSGPAALIEQIEAGACGLKVHEDW------ 222 (567)
T ss_pred EEecCCCccccCCCCcccccchhhHHHHHHHhc-cCCccEEEEeCC---ccchHHHHHHHHHcCCcEEEeCCCC------
Confidence 9999641 11111 122222232333333 355777766421 2234566778788999999986433
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCC
Q 013050 149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 228 (450)
Q Consensus 149 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 228 (450)
.++++.+.++++.|+++|.+|.+|++.... ...++...+...
T Consensus 223 -~~s~e~L~~al~~A~e~gv~V~iH~ET~~E-----------------------------~g~ve~t~~a~g-------- 264 (567)
T TIGR01792 223 -GATPAAIDNALSVADEYDVQVAVHTDTLNE-----------------------------SGFVEDTIAAFK-------- 264 (567)
T ss_pred -CCCHHHHHHHHHHHHHcCCEEEEeCCCccc-----------------------------chHHHHHHHHHC--------
Confidence 578999999999999999999999955432 112333333322
Q ss_pred CCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-HH
Q 013050 229 EGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-EK 295 (450)
Q Consensus 229 ~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-~~ 295 (450)
+.++|..|.... ....+.++.+...++..+ +.+| ..-++.+.+.. .-.+.+.+|.+.+- +-+ +-
T Consensus 265 -~rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~-st~p-t~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t 341 (567)
T TIGR01792 265 -GRTIHTYHTEGAGGGHAPDIIVVVGYNNILPS-STNP-TLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKET 341 (567)
T ss_pred -CCcchhHhhcCCCCCcHHHHHHHcCCCCcccC-CCCC-CCCCccCchhhhcCeEEEeccCCCCCcccchhhhhhcccee
Confidence 667777776531 144556666544432111 1111 12222222211 12233444443211 000 00
Q ss_pred H---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCC----C----HHHH---HH
Q 013050 296 L---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV----T----LEQL---AS 360 (450)
Q Consensus 296 l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gl----s----~~~a---l~ 360 (450)
+ .-+.+.|+..+++||..+.... ... - .++....... ...|. + .+.+ |+
T Consensus 342 ~~ae~~l~d~G~~~~~~sDs~~mgr~---------~~~-----~--~r~~q~a~k~~~~~g~~~~~~~~~~~~rl~r~L~ 405 (567)
T TIGR01792 342 IAAEDVLQDMGAISMISSDSQAMGRI---------GEV-----V--TRCWQTADKMKKQRGPLPGDSPGNDNNRVKRYVA 405 (567)
T ss_pred ccccchhhhCCcEEEecCCchhhCcc---------cce-----e--echHHHHHHHHHhcCCCcccccCChhhhHHHHHH
Confidence 0 1234569999999997532110 000 0 0000000011 11111 1 1112 99
Q ss_pred HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-Ccc
Q 013050 361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNH 438 (450)
Q Consensus 361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~ 438 (450)
++|.|||+++|+ +.+|+|++||.|||||||.+.. . .++..||++|+++|.. |.+
T Consensus 406 ~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f----------~--------------~~p~~v~~~G~i~~~~~Gd~ 461 (567)
T TIGR01792 406 KYTINPAITHGISDYIGSIEVGKLADLVLWEPAFF----------G--------------VKPDMVLKGGLIAWAIMGDP 461 (567)
T ss_pred HHhHHHHHHcCcccCceeeCCCCccCEEEEcCccc----------C--------------CChheEEECCEEEEEeCCCc
Confidence 999999999999 7899999999999999996631 0 1467999999999986 554
Q ss_pred c
Q 013050 439 A 439 (450)
Q Consensus 439 ~ 439 (450)
.
T Consensus 462 ~ 462 (567)
T TIGR01792 462 N 462 (567)
T ss_pred c
Confidence 3
No 79
>PRK05985 cytosine deaminase; Provisional
Probab=99.97 E-value=8.5e-28 Score=231.37 Aligned_cols=337 Identities=17% Similarity=0.113 Sum_probs=198.1
Q ss_pred eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--CCc-----cc-----------------
Q 013050 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTE-----WE----------------- 59 (450)
Q Consensus 4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--~~~-----~~----------------- 59 (450)
.+|.|++|+|++|++....+ ++.+++|++|++|+|||||+|+|+.... ..+ +.
T Consensus 17 ~~v~i~~g~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (391)
T PRK05985 17 VDILIRDGRIAAIGPALAAP---PGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSLRERIANERRRRAASG 93 (391)
T ss_pred eEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCHHHHHHHHHHhhccch
Confidence 47999999999999864432 2567999999999999999999995421 110 00
Q ss_pred -c----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHc
Q 013050 60 -G----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNA 131 (450)
Q Consensus 60 -~----~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 131 (450)
. .....++++++|+|+++++. ...+. ......+....+........++.......... ....+.+++..+.
T Consensus 94 ~~~~~~a~~~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~ 172 (391)
T PRK05985 94 HPAAERALALARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRA 172 (391)
T ss_pred hHHHHHHHHHHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHc
Confidence 1 11124578899999999985 33221 23344444444443333444444332211111 1234567777777
Q ss_pred CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050 132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211 (450)
Q Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 211 (450)
|+..+ ....+. .....+.+.+.++++.|+++|+++.+|++.... + ....
T Consensus 173 g~~~~-gg~~p~---~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d------------------------~---~~~~ 221 (391)
T PRK05985 173 GADVV-GGLDPA---GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGE------------------------L---GAFQ 221 (391)
T ss_pred CCCEE-eCCCCC---CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCC------------------------c---cHHH
Confidence 76422 222111 112456689999999999999999999854321 0 0112
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 286 (450)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (450)
+..+++..... ++ ..++.+.|+... .+..+.++.+++.|+.+.. ++.
T Consensus 222 ~~~~~e~~~~~---g~--~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~--~~~--------------------- 273 (391)
T PRK05985 222 LERIAARTRAL---GM--QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT--NAP--------------------- 273 (391)
T ss_pred HHHHHHHHHHh---CC--CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE--eCC---------------------
Confidence 33444444333 11 135777887532 1223667788888876654 210
Q ss_pred CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhc
Q 013050 287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSER 365 (450)
Q Consensus 287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~ 365 (450)
. ......+.++++.|+.+++|||+... ++... ......+. +........ ...-+++++|+|+|.|
T Consensus 274 ~--~~~~~~~~~l~~~Gv~v~lGtD~~~~-~~~p~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~al~~~T~~ 339 (391)
T PRK05985 274 G--SVPVPPVAALRAAGVTVFGGNDGIRD-TWWPY----------GNGDMLER-AMLIGYRSGFRTDDELAAALDCVTHG 339 (391)
T ss_pred C--CCCCCCHHHHHHCCCeEEEecCCCCC-CCcCC----------CCCcHHHH-HHHHHHHHccCChHHHHHHHHHHcch
Confidence 0 01112356778899999999996421 11100 01111111 111100000 1112457899999999
Q ss_pred hhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 436 (450)
Q Consensus 366 ~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g 436 (450)
||+++|++. ++|++||.||||++|.++....... . ..+..||++|++||++|
T Consensus 340 ~A~~lg~~~-~~l~~G~~ADlvvld~~~~~~~~~~------~------------~~~~~v~~~G~~v~~~~ 391 (391)
T PRK05985 340 GARALGLED-YGLAVGARADFVLVDAETVAEAVVA------V------------PVRRLVVRGGRIVARDG 391 (391)
T ss_pred hHHHhCCcc-cCCCCCCcCCEEEECCCCHHHHHhh------C------------CcceEEEECCEEEecCC
Confidence 999999944 4699999999999998753221111 1 13567999999999986
No 80
>PRK09230 cytosine deaminase; Provisional
Probab=99.97 E-value=3.1e-27 Score=228.25 Aligned_cols=351 Identities=16% Similarity=0.183 Sum_probs=198.7
Q ss_pred eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCCc-cc--------------------
Q 013050 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTE-WE-------------------- 59 (450)
Q Consensus 4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~~-~~-------------------- 59 (450)
.+|.|+||+|++|++..+.. .+..++||+.|++|+|||||+|+|+... +... .+
T Consensus 20 ~~i~i~~g~I~~i~~~~~~~--~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~t~ 97 (426)
T PRK09230 20 WQITIEDGKISAIEPQSEAS--LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTLFEGIERWAERKALLTH 97 (426)
T ss_pred EEEEEECCEEEEecCCCCCC--CCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCHHHHHHHHHHHHhcCCH
Confidence 47999999999999864321 1356899999999999999999999753 1110 01
Q ss_pred -c----hHHHHHHHHhCCceEEEeCCCCCC-CCCCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHHHHcC
Q 013050 60 -G----FPSGTKAAAAGGITTLIDMPLNSD-PSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAG 132 (450)
Q Consensus 60 -~----~~~~~~~~~~~GvT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 132 (450)
+ ......+++++|+|+++++. ... +.....+.+....+.......+.+....... ...+...+.+++..+.+
T Consensus 98 ed~~~~a~~~~~e~l~~GvTtvr~~~-d~~~~~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~ 176 (426)
T PRK09230 98 EDVKQRAWQTLKWQIANGIQHVRTHV-DVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLG 176 (426)
T ss_pred HHHHHHHHHHHHHHHHcCcccEEecc-ccCCcchhHHHHHHHHHHHhhCcceEEEEeccCccccCCccHHHHHHHHHHcC
Confidence 0 12234477899999999985 321 1111122233333333333333333322110 01122234455555554
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHH
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 212 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (450)
..-+. ...+.. .....+.+.+.++++.|+++|+++.+|+.+... +. ....
T Consensus 177 ~~~vg-~~p~~~--~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~------------------------~~---~~~~ 226 (426)
T PRK09230 177 ADVVG-AIPHFE--FTREYGVESLHKAFALAQKYDRLIDVHCDEIDD------------------------EQ---SRFV 226 (426)
T ss_pred CCEEe-CCCCcc--ccchhHHHHHHHHHHHHHHhCCCcEEEECCCCC------------------------cc---hHHH
Confidence 42221 111110 001124688999999999999999999954321 00 0112
Q ss_pred HHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050 213 RELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287 (450)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (450)
....++....+ . +.++.+.|+... ....+.++.+++.|+.+.. ||........... ..| .
T Consensus 227 ~~~~~~~~~~g---l--~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~--cP~sn~~l~~~~~-------~~p-~ 291 (426)
T PRK09230 227 ETVAALAHREG---M--GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVA--NPLVNIHLQGRFD-------TYP-K 291 (426)
T ss_pred HHHHHHHHHhC---C--CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEE--CcchhhhhcCCCC-------CCC-C
Confidence 33455555431 1 456777887754 1256678888888876655 7754322111100 001 0
Q ss_pred CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC-CHHHHHHHHhhch
Q 013050 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERP 366 (450)
Q Consensus 288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl-s~~~al~~aT~~~ 366 (450)
......+.++++.|+.+++|||+. .+.... .|....-..+............ ++.++++|+|.||
T Consensus 292 --~~g~~pi~~l~~aGv~V~lGTD~~-~d~~~~-----------~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~maT~~g 357 (426)
T PRK09230 292 --RRGITRVKEMLEAGINVCFGHDDV-FDPWYP-----------LGTANMLQVLHMGLHVCQLMGYGQINDGLNLITTHS 357 (426)
T ss_pred --CCCCcCHHHHHHCCCeEEEecCCC-CCCCcC-----------CCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHhcch
Confidence 011223567788999999999963 221111 0111111111111111111112 3689999999999
Q ss_pred hHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 367 A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
|++||+++.| |++||.||||++|.+.+..+ .+. ...+..|+++|++|+..
T Consensus 358 A~alg~~~~g-le~G~~ADlv~~~~~~~~~~------~~~------------~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 358 ARTLNLQDYG-IEVGNPANLIILPAENGFDA------VRR------------QVPVRYSIRHGKVIAET 407 (426)
T ss_pred hHHhCCCCcC-CCCCCcCCEEEEeCCCHHHH------Hhc------------cCCceEEEECCEEEecc
Confidence 9999995477 99999999999996543222 111 13678999999999865
No 81
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=237.56 Aligned_cols=354 Identities=18% Similarity=0.161 Sum_probs=198.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---------Ccc--------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---------TEW-------------- 58 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---------~~~-------------- 58 (450)
+.+++.|++|+|+.|++..+.+ +..+++|++|++|+|||||+|+|+..... ..|
T Consensus 21 ~~~~~~i~~g~I~~ig~~~~~~---~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~wl~~~~~~~~~~~~~ 97 (421)
T COG0402 21 EDGDLVIEDGKIVAIGANAEGP---PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLT 97 (421)
T ss_pred eeeeEEEcCCEEEEeCCcCCCC---CCceeecCCCCEeccCccccccchHHHHHhhhhcccchHHHHHHHHhHHHhhcCC
Confidence 4589999999999999986543 46789999999999999999999853211 111
Q ss_pred -cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccCCC---cc----chHHH
Q 013050 59 -EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVPEN---AY----NASAL 125 (450)
Q Consensus 59 -~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~----~~~~~ 125 (450)
+. ......+++++|+|+++.++ ... ..+...+.........+......+... +.... .+ ..+.+
T Consensus 98 ~e~~~~~a~~~~~e~l~~G~t~~~~~~-~~~--~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 174 (421)
T COG0402 98 EEDLYARALLALLEMLRNGTTTARTHV-DVV--AESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELL 174 (421)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccc-chh--hhhHHHHHHHHHHhCCeeEeeeccccCCCCcccccchHHHHHHHHHH
Confidence 01 12234478999999977665 111 111111111222221121111111110 01111 11 12334
Q ss_pred HHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-ChhhhhhhhhhccCcCCccccccccCCCC
Q 013050 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVKLEDDTLDTRSYSTYLKTRP 204 (450)
Q Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 204 (450)
+++...+ .+.....+. ....++.+.++.+.+.++++|+++.+|+. +...++......+
T Consensus 175 ~~~~~~~--~~~~~~~p~---~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g---------------- 233 (421)
T COG0402 175 REAHGLG--RDVVGLAPH---FPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYG---------------- 233 (421)
T ss_pred HHHhcCC--CeeEEEecC---CCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcC----------------
Confidence 4444455 222222221 11357889999999999999999999994 4433333332111
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050 205 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA 284 (450)
Q Consensus 205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (450)
...++....... . +.+..+.|+.+. +.+.++.+++.|+.+.. ||.....-
T Consensus 234 ----~~~~~~~~~~g~-------l-~~~~~~~H~~~~--~~~e~~~l~~~g~~v~~--cP~sN~~L-------------- 283 (421)
T COG0402 234 ----ARPVERLDLLGL-------L-GSHTLLAHCVHL--SEEELELLAESGASVVH--CPRSNLKL-------------- 283 (421)
T ss_pred ----CCHHHHHHHcCC-------C-CCCeEEEEeccC--CHHHHHHHhhCCCeEEE--Ccchhccc--------------
Confidence 000111111111 1 233444555442 22233334466655554 77543221
Q ss_pred CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHH---HHHHH
Q 013050 285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE---QLASW 361 (450)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~---~al~~ 361 (450)
.. ...++.++++.|+.+.+|||...++...+++. +......++.......+.. ++++|
T Consensus 284 ---~s--G~~p~~~~~~~gv~v~~gTD~~~~~~~~d~l~--------------~~~~a~~l~~~~~~~~~~~~~~~~l~~ 344 (421)
T COG0402 284 ---GS--GIAPVRRLLERGVNVALGTDGAASNNVLDMLR--------------EMRTADLLQKLAGGLLAAQLPGEALDM 344 (421)
T ss_pred ---cC--CCCCHHHHHHcCCCEEEecCCccccChHHHHH--------------HHHHHHHHHHhhcCCCcccchHHHHHH
Confidence 00 01124567888999999999988876544331 1112222222222121111 38999
Q ss_pred HhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050 362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439 (450)
Q Consensus 362 aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 439 (450)
+|.|||++||+.+.|+|++||.|||||+|.+.+...+.. + .+.+........|..||++|+.++.+|++.
T Consensus 345 aT~~gA~alg~~~~G~le~G~~ADlvvld~~~~~~~~~~-~-------~~~~v~~~~~~~v~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 345 ATLGGAKALGLDDIGSLEVGKKADLVVLDASAPHLAPLR-P-------VSRLVFAAGGKDVDRVLVDGRLVMEDGRLL 414 (421)
T ss_pred HHhhHHHHcCCcccCCcccccccCEEEEcCCCCcccccc-H-------HHHHHHhcCCCceeEEEECCEEEEEcceeh
Confidence 999999999986799999999999999998875332211 0 001111111237999999999999999886
No 82
>PLN02303 urease
Probab=99.96 E-value=2.2e-28 Score=241.13 Aligned_cols=333 Identities=22% Similarity=0.279 Sum_probs=198.7
Q ss_pred cceeEEEeCCEEEEeccCCCCC--C-------CCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 72 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~--~-------~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G 72 (450)
++++|+|+||+|++|++...+. . ..++.++||++|++|+|||||+|+|+..++. .++.+++|
T Consensus 350 ~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~Pg~---------~~eaLasG 420 (837)
T PLN02303 350 YKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICPQL---------ATEAIASG 420 (837)
T ss_pred EEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCCcH---------HHHHHHHh
Confidence 5689999999999999753221 1 0124689999999999999999999976642 26677778
Q ss_pred ceEEEeCCCCC----CCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050 73 ITTLIDMPLNS----DPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 146 (450)
Q Consensus 73 vT~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 146 (450)
+|+++.++... .+.. .+...+..+.+... ..++++++++.. +....+.+.++.+.|+.+++.+..
T Consensus 421 VTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gkG---~~s~l~eL~elieaGa~GfK~h~d----- 491 (837)
T PLN02303 421 ITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGKG---NTAKPEGLHEIIKAGAMGLKLHED----- 491 (837)
T ss_pred HHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEccC---cccCHHHHHHHHHcCcEEEEECCC-----
Confidence 88877764221 2222 35666776666433 446888887632 224567788888999999997532
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226 (450)
Q Consensus 147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 226 (450)
+..+++.+.++++.|+++|+++.+|+++... ...++..++...
T Consensus 492 --~gvTpelL~raLe~AkelGVpVaIHAEdLnE-----------------------------~G~vE~t~~a~G------ 534 (837)
T PLN02303 492 --WGTTPAAIDNCLDVAEEYDIQVTIHTDTLNE-----------------------------SGCVEHSIAAFK------ 534 (837)
T ss_pred --CCCCHHHHHHHHHHHHHcCCEEEEecCcccc-----------------------------cchHHHHHHHHC------
Confidence 2467889999999999999999999876322 001122222221
Q ss_pred CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEE--EecCcchhcccccccCCCCCceEEcCCCCC------hhhH-HH
Q 013050 227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSIT--VETCPHYLAFSAEEIPDGDTRFKCAPPIRD------AANK-EK 295 (450)
Q Consensus 227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~ 295 (450)
+.++|..|-... --..+.++-+...++..+ ....|+..-.-.+.+...-.+.+.+|.+.+ .+-+ +-
T Consensus 535 ---~RpIh~~h~~Ga~gghapdi~~~~~~~nvlpsstnpt~p~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~~t 611 (837)
T PLN02303 535 ---GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAET 611 (837)
T ss_pred ---CChHHHHHhcCCCCCCCcHHHHhcCCCCccCCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchh
Confidence 222332222110 022334444433322111 111111111111111111222333443311 0101 11
Q ss_pred H---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH---HH------------hcCCCHHH
Q 013050 296 L---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY---GR------------KYGVTLEQ 357 (450)
Q Consensus 296 l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~------------~~gls~~~ 357 (450)
+ .-+.+.|++.+++||+...... ......+|+. .+ ...++.++
T Consensus 612 iaaed~l~d~G~~s~~~SDs~amgr~-------------------ge~i~r~~q~A~k~~~~~g~l~~~~~~~dn~rv~~ 672 (837)
T PLN02303 612 IAAEDILHDMGAISIISSDSQAMGRI-------------------GEVITRTWQTAHKMKSQRGALEPRGADNDNFRIKR 672 (837)
T ss_pred hccchhhhccCCEEEEeccchhhCcc-------------------cceeeehHHHHHHHHHhcCCCCCccccccccCHHH
Confidence 1 1134469999999997532110 0000111111 11 12367799
Q ss_pred HHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 358 LASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 358 al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
+|+++|.|||+++|+ +.+|+|++||.||||||+.+. + ..++..||++|++||..
T Consensus 673 aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~-----------f-------------g~~~~~vi~~G~ivy~~ 727 (837)
T PLN02303 673 YIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAF-----------F-------------GAKPEMVIKGGQIAWAQ 727 (837)
T ss_pred HHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccc-----------c-------------CCCeeEEEECCEEEEcc
Confidence 999999999999999 789999999999999999542 0 02688999999999986
No 83
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.96 E-value=1.4e-27 Score=229.10 Aligned_cols=318 Identities=18% Similarity=0.178 Sum_probs=183.0
Q ss_pred EEEeCCEEEEeccCCCCCC-CCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------------------c---
Q 013050 6 VEIKEGNIISIVSEEDWPR-NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------------------W--- 58 (450)
Q Consensus 6 V~I~~g~I~~Ig~~~~~~~-~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------------------~--- 58 (450)
|+|+||+|++|++....+. .+.+.++||++|++|+|||||+|+|+....... +
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 6799999999998654321 113568999999999999999999996532110 0
Q ss_pred -------cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEec--cccCCC---cc
Q 013050 59 -------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWG--GLVPEN---AY 120 (450)
Q Consensus 59 -------~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~---~~ 120 (450)
++ .......++++|||++.++.............++ ..+.... ...+...+.+ ...... ..
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 159 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLR-VIRRLKEEGPVDLVSTFLGAHAVPPEYKGREE 159 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHH-HHHHHHhhCCCceEeeeeecccCCcccCChHH
Confidence 01 1123447789999999985211111011111122 2222222 1222221211 111111 01
Q ss_pred chH-HHHHHH-----HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcc
Q 013050 121 NAS-ALEALL-----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 194 (450)
Q Consensus 121 ~~~-~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 194 (450)
..+ ...+++ +.++.+++.+... ...+.+.+.++++.|+++|+++.+|+.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~--------------- 218 (371)
T cd01296 160 YIDLVIEEVLPAVAEENLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADELSN--------------- 218 (371)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcCcCC---------------
Confidence 000 012222 2456666664322 2356889999999999999999999954221
Q ss_pred ccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050 195 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 274 (450)
Q Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 274 (450)
+ ..+... ... +. ..+.|+... +.+.++.+++.|+.+.. ||........
T Consensus 219 ---------~-----~~~~~~----~~~-------g~-~~i~H~~~~--~~~~i~~la~~g~~v~~--~P~~~~~l~~-- 266 (371)
T cd01296 219 ---------I-----GGAELA----AEL-------GA-LSADHLEHT--SDEGIAALAEAGTVAVL--LPGTAFSLRE-- 266 (371)
T ss_pred ---------C-----CHHHHH----HHc-------CC-CeeHHhcCC--CHHHHHHHHHcCCeEEE--ChHHHHHhCC--
Confidence 0 011111 111 21 224555442 23567777777766554 6643322100
Q ss_pred CCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCC
Q 013050 275 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGV 353 (450)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gl 353 (450)
. ...+.++++.|+.+++|||+.|.... ...+...+.. ....++
T Consensus 267 --------~---------~~~~~~l~~~Gv~v~lgsD~~p~~~~-------------------~~~l~~~~~~~~~~~~l 310 (371)
T cd01296 267 --------T---------YPPARKLIDAGVPVALGTDFNPGSSP-------------------TSSMPLVMHLACRLMRM 310 (371)
T ss_pred --------C---------CCCHHHHHHCCCcEEEecCCCCCCCh-------------------HHHHHHHHHHHHHhcCC
Confidence 0 11245678899999999997543211 0112222222 345689
Q ss_pred CHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050 354 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 429 (450)
Q Consensus 354 s~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G 429 (450)
+++++++++|.|||+++|+ +++|+|++||+|||||+|.++...+... . ...+|..||++|
T Consensus 311 ~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~~~~------~----------~~~~v~~v~~~G 371 (371)
T cd01296 311 TPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEHLAYR------F----------GVNLVEYVIKNG 371 (371)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCchHhhhhh------c----------CCCCceEEEeCc
Confidence 9999999999999999999 6789999999999999998864322110 0 013689999998
No 84
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=99.96 E-value=1e-27 Score=226.32 Aligned_cols=311 Identities=23% Similarity=0.276 Sum_probs=202.1
Q ss_pred CcceeEEEeCCEEEEe-ccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 1 MCKRAVEIKEGNIISI-VSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 1 ~~~~~V~I~~g~I~~I-g~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
++.++|+|.+|+|+.| ++.. .+++++||+.|++|.|||||.|.|....-.. ...-.+..+.+|+||++.-
T Consensus 41 i~~~dIaI~~grI~~v~~~~~-----~e~~~~iDa~g~yivPGfID~H~HIESSm~t----P~~FA~~Vlp~GtTtvV~D 111 (584)
T COG1001 41 IYKGDIAIAGGRIVGVIGEYR-----AEATEVIDAAGRYIVPGFIDAHLHIESSMLT----PSEFARAVLPHGTTTVVSD 111 (584)
T ss_pred EEeeeEEEECCEEEEeecCcC-----cccceeecCCCCEeccceeecceeccccccC----HHHHHHHhhccCceEEeeC
Confidence 3678999999999995 3322 2578999999999999999999998765433 4556778899999999886
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc-cCCC-----c--cchHHHHHHHH-cCCcEEEEecccCCCCCCCC
Q 013050 80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPEN-----A--YNASALEALLN-AGVLGLKSFMCPSGINDFPM 150 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~--~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 150 (450)
|+ ..-.....+.+..+.+.+.. .++++.++.+. .+.. + -..+.++++.+ ..+.++..++.+++. .
T Consensus 112 PH-EIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~pgV----i 185 (584)
T COG1001 112 PH-EIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEVIGLGEMMNFPGV----I 185 (584)
T ss_pred cH-HHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCccchhhhcCCchh----c
Confidence 62 21122345556666665544 56777665331 2211 1 13577888877 688888888887765 4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhh-hhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSE-RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 229 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (450)
..++.+...++.++++|++|..|+......+ ..+..-|...|+ |....+++++..+.
T Consensus 186 ~~D~~~l~kl~a~~~~~k~VdGHapgl~g~~Ln~Y~aaGi~tDH--------------E~~t~EEa~~klr~-------- 243 (584)
T COG1001 186 EGDPDMLAKLEAARKAGKPVDGHAPGLSGKELNAYIAAGISTDH--------------ESTTAEEALEKLRL-------- 243 (584)
T ss_pred cCCHHHHHHHHHHHHcCCeecccCCCCChHHHHHHHhcCCCcCc--------------ccCCHHHHHHHHhC--------
Confidence 5667778889999999999999995433210 111111111111 01111222222222
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHh-cC-CeeE
Q 013050 230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM-DG-HIDM 307 (450)
Q Consensus 230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~ 307 (450)
|..+.+.+.|.. .. ...+...+. .+ ..++
T Consensus 244 Gm~i~iReGS~a-~d------------------------------------------------l~~l~~~i~e~~~~~~~ 274 (584)
T COG1001 244 GMKIMIREGSAA-KD------------------------------------------------LAALLPAITELGSRRVM 274 (584)
T ss_pred CcEEEEEcCchh-hh------------------------------------------------HHHHHHHHhhcCCceEE
Confidence 333333333322 11 111212122 12 3456
Q ss_pred EcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEE
Q 013050 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 387 (450)
Q Consensus 308 ~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlv 387 (450)
+.||....+.... +-.+..+++.+.+.|++|.+|++|||+|||+.+|+++.|.|+||+.||||
T Consensus 275 lcTDD~~p~dl~~-----------------eGhld~~vR~Ai~~Gv~p~~a~qmAtiN~A~~~gl~~~G~iAPG~~ADlv 337 (584)
T COG1001 275 LCTDDRHPDDLLE-----------------EGHLDRLVRRAIEEGVDPLDAYQMATINPAEHYGLDDLGLIAPGRRADLV 337 (584)
T ss_pred EECCCCChhHhhh-----------------cCCHHHHHHHHHHcCCCHHHHHHHHhcCHHHHcCCcccccccCCccccEE
Confidence 7888543321111 11366777888899999999999999999999999669999999999999
Q ss_pred EEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050 388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439 (450)
Q Consensus 388 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 439 (450)
+++ ++.. -+|.+|+++|++|.++|+-+
T Consensus 338 i~~-----------DL~~--------------~~v~~V~~~G~~v~~~g~~l 364 (584)
T COG1001 338 ILE-----------DLRN--------------FKVTSVLIKGRVVAEDGKAL 364 (584)
T ss_pred EEc-----------cccc--------------CceeEEEECCEEEecCCcee
Confidence 999 2211 27899999999999999733
No 85
>PRK14085 imidazolonepropionase; Provisional
Probab=99.96 E-value=1e-27 Score=229.78 Aligned_cols=296 Identities=19% Similarity=0.182 Sum_probs=176.0
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------c------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------W------------ 58 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------~------------ 58 (450)
.+++|+|++|+|++|++..+.+ .+.++||++|++|||||||+|+|+....... +
T Consensus 27 ~~~~v~i~~g~I~~Vg~~~~~~---~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 103 (382)
T PRK14085 27 RDAAVVVEGGRVAWVGPAADAP---AADERVDAGGRAVLPGFVDSHSHLVFAGDRSAEFAARMAGEPYSAGGIRTTVAAT 103 (382)
T ss_pred cCcEEEEECCEEEEEcCCccCC---CCCeEEeCCCCEEecCeEecCcCccccCChhHHHHhhhcCCCccCCChHHHHHHH
Confidence 4678999999999999864322 3568999999999999999999996432210 0
Q ss_pred -----cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc--ccC---CCc-cchH
Q 013050 59 -----EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG--LVP---ENA-YNAS 123 (450)
Q Consensus 59 -----~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~-~~~~ 123 (450)
++ .....++++++|+|++++++ ... ......+... +... .........+. ... .+. ...+
T Consensus 104 ~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~-~~~--~~~~~~~~~~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (382)
T PRK14085 104 RAASDEELRANVRRLVAEALRQGTTTVETKT-GYG--LTVEDEARSA-RIAA-EFTDEVTFLGAHVVPPEYAGDADEYVD 178 (382)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCceEEEcCC-cCC--CCHHHHHHHH-HHHH-HhhhcceeeccccCCcccCCCHHHHHH
Confidence 11 11235578999999999985 221 1111112111 1111 11101111110 011 111 1111
Q ss_pred H----HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccc
Q 013050 124 A----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 199 (450)
Q Consensus 124 ~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
. +...++.....++.+... ...+.++++++++.|+++|+++.+|+.....
T Consensus 179 ~~~~~~~~~~~~~~~~idi~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-------------------- 232 (382)
T PRK14085 179 LVCGPMLDAVAPHARWIDVFCER------GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGP-------------------- 232 (382)
T ss_pred HHHHHHHHHHHHhCCeEEEEecC------CCCCHHHHHHHHHHHHHcCCCeEEEeCcccC--------------------
Confidence 1 123444455566665422 1467899999999999999999999943110
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050 200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 279 (450)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 279 (450)
...+..+.++ +. ..+.|+.. -+.+.++.+++.|+.++ ++|......
T Consensus 233 ---------~~~v~~~~~~-----------g~-~~i~H~~~--l~~~~~~~la~~gv~~~--~~P~~~~~~--------- 278 (382)
T PRK14085 233 ---------GPGVRLAVEL-----------GA-ASVDHCTY--LTDADVDALAGSGTVAT--LLPGAEFST--------- 278 (382)
T ss_pred ---------ChHHHHHHHc-----------CC-CcHHHhCC--CCHHHHHHHHHcCCEEE--ECcHHHHhc---------
Confidence 0112222221 21 12445554 22345666777775444 366532110
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcCCCHHHH
Q 013050 280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQL 358 (450)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~gls~~~a 358 (450)
+ .....+.++++.|+.+++|||+.+..+.. ..+..... .....+++++++
T Consensus 279 --------~--~~~~~~~~l~~aGv~v~lgsD~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~a 329 (382)
T PRK14085 279 --------R--QPYPDARRLLDAGVTVALASDCNPGSSYT-------------------SSMPFCVALAVRQMGMTPAEA 329 (382)
T ss_pred --------C--CCCchHHHHHHCCCcEEEEeCCCCCCChH-------------------HHHHHHHHHHHHhcCCCHHHH
Confidence 0 11234677788999999999975432111 01111122 234578999999
Q ss_pred HHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCc
Q 013050 359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 394 (450)
Q Consensus 359 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~ 394 (450)
++++|.|||+++|+++.|+|++||.|||+++|.+..
T Consensus 330 l~~aT~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~ 365 (382)
T PRK14085 330 VWAATAGGARALRRDDVGVLAVGARADLHVLDAPSH 365 (382)
T ss_pred HHHHHHHHHHHcCCCCCCCcCCCCCCCEEEEcCCCC
Confidence 999999999999995589999999999999998753
No 86
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.96 E-value=4.4e-28 Score=230.04 Aligned_cols=288 Identities=22% Similarity=0.123 Sum_probs=176.4
Q ss_pred CcEEecCCCEEeccceeeccccCCCCCCcc------cc-----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHH
Q 013050 29 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEW------EG-----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 97 (450)
Q Consensus 29 ~~viD~~g~~v~PG~iD~H~H~~~~~~~~~------~~-----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~ 97 (450)
+++||+.|++|||||||+|+|+........ +. .....+.++++||||+++++ +.... . +....
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~~----~-~~~~~ 74 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADYG----L-LRDAI 74 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-CcchH----H-HHHHH
Confidence 368999999999999999999865422111 11 12467788999999999996 32211 1 22221
Q ss_pred HHHhcCCceEEEEec-------------------------cccCCCccchHHHHHHHHcCCcEEEEecccCCC-----CC
Q 013050 98 DAAEKRIYVDVGFWG-------------------------GLVPENAYNASALEALLNAGVLGLKSFMCPSGI-----ND 147 (450)
Q Consensus 98 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~ 147 (450)
..... ...++...+ .......+..+.++++.+.|+..+|.|...... .+
T Consensus 75 ~~g~~-~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~ 153 (342)
T cd01299 75 DAGLI-PGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPP 153 (342)
T ss_pred HcCCc-cCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCc
Confidence 11111 011111111 111122234677888889999999999754211 11
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 227 (450)
Q Consensus 148 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 227 (450)
.+..+.+.+.++++.|+++|+++.+|+..... +..+++.
T Consensus 154 ~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~l~~--------- 192 (342)
T cd01299 154 DTQFSEEELRAIVDEAHKAGLYVAAHAYGAEA--------------------------------IRRAIRA--------- 192 (342)
T ss_pred ccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------------------HHHHHHc---------
Confidence 13578899999999999999999999954321 2333322
Q ss_pred CCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCC-------ChhhHHHHHHHH
Q 013050 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR-------DAANKEKLWEAL 300 (450)
Q Consensus 228 ~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~ 300 (450)
+.. .+.|+.. -..+.++.+++.|+.+.. ++.......... .....++.. .......+..+.
T Consensus 193 --G~~-~i~H~~~--~~~~~~~~l~~~g~~~~~--t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (342)
T cd01299 193 --GVD-TIEHGFL--IDDETIELMKEKGIFLVP--TLATYEALAAEG-----AAPGLPADSAEKVALVLEAGRDALRRAH 260 (342)
T ss_pred --CCC-EEeecCC--CCHHHHHHHHHCCcEEeC--cHHHHHHHHhhc-----cccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3566654 234567777788765543 554221100000 000000000 112234567788
Q ss_pred hcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccc
Q 013050 301 MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIA 379 (450)
Q Consensus 301 ~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~ 379 (450)
+.|+.+++|||....+.. + ..+...+..+.+.++|++++++++|.|||+++|+ ++.|+|+
T Consensus 261 ~~Gv~v~~GTD~~~~~~~--------------~-----~~~~~e~~~~~~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~ 321 (342)
T cd01299 261 KAGVKIAFGTDAGFPVPP--------------H-----GWNARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIE 321 (342)
T ss_pred HcCCeEEEecCCCCCCCc--------------h-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCccCCcceEC
Confidence 899999999996421000 0 0122233445567899999999999999999999 6799999
Q ss_pred cCCCccEEEEeCCCce
Q 013050 380 IGNHADLVVWEPEAEF 395 (450)
Q Consensus 380 ~G~~ADlvv~d~~~~~ 395 (450)
+||.|||+|+|.|+..
T Consensus 322 ~G~~ADlvvl~~~pl~ 337 (342)
T cd01299 322 AGKLADLLVVDGDPLE 337 (342)
T ss_pred CCCcCCEEEECCChhh
Confidence 9999999999987643
No 87
>PRK07572 cytosine deaminase; Validated
Probab=99.96 E-value=3.3e-26 Score=222.16 Aligned_cols=345 Identities=18% Similarity=0.179 Sum_probs=193.2
Q ss_pred eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCC----------------------cc
Q 013050 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT----------------------EW 58 (450)
Q Consensus 4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~----------------------~~ 58 (450)
.+|+|++|+|++|++..+. ...+++|++|++|+|||||+|+|+... +.. ..
T Consensus 18 ~~i~i~~g~I~~v~~~~~~----~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~e~l~~~~~~~~~~t~ 93 (426)
T PRK07572 18 IDIGIAGGRIAAVEPGLQA----EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLLEGIALWGELKPLLTQ 93 (426)
T ss_pred EEEEEECCEEEEecCCCCC----CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHHHHHHHHHHHHhcCCH
Confidence 4799999999999976432 245799999999999999999999542 110 00
Q ss_pred cc----hHHHHHHHHhCCceEEEeCCCCC-CCCCCcHHHHHHHHHHHhcCCceEEEEeccccC----CCccchHHHHHHH
Q 013050 59 EG----FPSGTKAAAAGGITTLIDMPLNS-DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP----ENAYNASALEALL 129 (450)
Q Consensus 59 ~~----~~~~~~~~~~~GvT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 129 (450)
++ ....+++++++|+|+++++. .. .+.......+......... .+...... +.. ......+.+++.+
T Consensus 94 edl~~~a~~~~~e~l~~G~Ttvrd~~-d~~~~~~~~~~a~~~~~~~~~~--~~~~~~~a-~~~~g~~~~~~~~~~~~~~l 169 (426)
T PRK07572 94 EALVERALRYCDWAVARGLLAIRSHV-DVCDPRLLAVEALLEVRERVAP--YLDLQLVA-FPQDGVLRSPGAVDNLERAL 169 (426)
T ss_pred HHHHHHHHHHHHHHHHcCcccEeecc-ccCCCcccHHHHHHHHHHHhhc--cceEEEEe-ccChhhccCccHHHHHHHHH
Confidence 11 22345588999999999974 21 2211222222222221111 22221111 111 1122355677777
Q ss_pred HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHH
Q 013050 130 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209 (450)
Q Consensus 130 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (450)
+.|+..+.... +. ........+.++.++++|+++|+++.+|+.+... +. .
T Consensus 170 ~~g~d~iGg~p-~~--~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~------------------------~~---~ 219 (426)
T PRK07572 170 DMGVDVVGGIP-HF--ERTMADGAESVRLLCEIAAERGLRVDMHCDESDD------------------------PL---S 219 (426)
T ss_pred HcCCCEEeCCC-CC--ccccchHHHHHHHHHHHHHHcCCCeEEEECCCCC------------------------hh---H
Confidence 78875542211 10 0001122489999999999999999999943221 00 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA 284 (450)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (450)
..++...+...+. +. ..++.+.|+... ....+.++.+++.|+.+.. ||.......... ...
T Consensus 220 ~~~~~~~~~~~~~---G~--~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~--~P~~n~~l~~~~-------~~~ 285 (426)
T PRK07572 220 RHIETLAAETQRL---GL--QGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIA--NPLINITLQGRH-------DTY 285 (426)
T ss_pred HHHHHHHHHHHHh---CC--CCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEE--CchhhhhhcCCC-------CCC
Confidence 1122223333222 11 125777887532 1345677888888876665 654321110000 000
Q ss_pred CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCC----HHHHHH
Q 013050 285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVT----LEQLAS 360 (450)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls----~~~al~ 360 (450)
| . ......+.++++.|+.+++|||+.. ++.. ..++....+. ........+++ +.++++
T Consensus 286 ~-~--~~g~~~v~~l~~~GV~v~lGtD~~~-~~~~----------~~~~~~~~e~----~~~~~~~~~~~~~~~l~~~l~ 347 (426)
T PRK07572 286 P-K--RRGMTRVPELMAAGINVAFGHDCVM-DPWY----------SLGSGDMLEV----AHMGLHVAQMTGQDAMRACFD 347 (426)
T ss_pred C-C--CCCCcCHHHHHHCCCcEEEecCCCC-CCCC----------CCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence 1 0 0122335677889999999999641 1100 0001111111 11111222343 356677
Q ss_pred HHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050 361 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437 (450)
Q Consensus 361 ~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~ 437 (450)
++|.|||++||+++.| |++||+||||++|...+.. ......++..||++|++|+....
T Consensus 348 ~aT~~~A~~lgl~~~g-i~~G~~ADlvl~d~~~p~e------------------~i~~~~~~~~V~~~G~~v~~~~~ 405 (426)
T PRK07572 348 AVTVNPARIMGLEGYG-LEPGCNADLVLLQARDPIE------------------AIRLRAARLAVIRRGKVIARTPP 405 (426)
T ss_pred HhhcchHHhhCCCCcC-CCCCCcCCEEEEeCCCHHH------------------HHHhcCCceEEEECCEEEeccCC
Confidence 9999999999995467 9999999999999532111 11111368899999999988744
No 88
>PLN02599 dihydroorotase
Probab=99.96 E-value=3.7e-26 Score=213.01 Aligned_cols=298 Identities=20% Similarity=0.212 Sum_probs=225.4
Q ss_pred CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CceEEEEeccc
Q 013050 37 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGL 114 (450)
Q Consensus 37 ~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 114 (450)
.+.+|---|+|+|+.+.. +....-...+.|+|++++|| +..|.....+.+..+.+++... ..+++.+++.+
T Consensus 22 ~~~~~~~~d~h~hlr~~~------~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l 94 (364)
T PLN02599 22 ELTITRPDDWHLHLRDGA------KLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTL 94 (364)
T ss_pred eEEecCCcceeeEccCcH------HHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEE
Confidence 367999999999998754 44555566889999999999 8888899999998888888766 45788888666
Q ss_pred cCCCccchHHHHHHHHcCCc-EEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCC
Q 013050 115 VPENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 192 (450)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 192 (450)
........+++.++.+.|+. ++|.|+...+.+ +....+.+.+.++++.+++.|+++.+|+++..... +
T Consensus 95 ~lt~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~----------~ 164 (364)
T PLN02599 95 YLTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSV----------D 164 (364)
T ss_pred ecCCCCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccc----------c
Confidence 33222456788888889999 999986533211 22233468999999999999999999998744200 0
Q ss_pred ccccccccCCCChHHHHHHHHHHH--HHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc
Q 013050 193 TRSYSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 270 (450)
Q Consensus 193 ~~~~~~~~~~~p~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 270 (450)
.. ..+...+.+++ .+++ +++.++|+.|+++. ++++.+++++. + .+++++||||+.++
T Consensus 165 ~~-----------~~E~~~i~r~l~~~la~-------~~g~kI~i~HiSt~-~~ve~v~~ak~-~-~vtae~tpHhL~l~ 223 (364)
T PLN02599 165 IF-----------DREKVFIDTILAPLVQK-------LPQLKIVMEHITTM-DAVEFVESCGD-G-NVAATVTPQHLLLN 223 (364)
T ss_pred cc-----------ccHHHHHHHHHHHHHHh-------ccCCeEEEEecChH-HHHHHHHhccC-C-CEEEEecHHHHhcC
Confidence 00 01223455666 3555 45999999999999 99999998774 3 79999999999999
Q ss_pred ccccC--CCCCceEEcCCCCChhhHHHHHHHHhcCCe-eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH
Q 013050 271 AEEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347 (450)
Q Consensus 271 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (450)
.+.+. .++..++++||+|...+++.+|+++..|.. ++++|||.|+....+..+ +. ..|+......++.+...
T Consensus 224 ~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~---~g--~~Gi~~~~~~l~~l~~~ 298 (364)
T PLN02599 224 RNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEAS---CG--CAGIYSAPVALSLYAKA 298 (364)
T ss_pred HHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCC---CC--CCCcccHHHHHHHHHHH
Confidence 88765 346679999999999999999999999996 899999999987765321 11 12334433357765555
Q ss_pred HHhcCCCHHHHHHHHhhchhHHhCCC-CCCcc
Q 013050 348 GRKYGVTLEQLASWWSERPAKLAGQV-SKGAI 378 (450)
Q Consensus 348 ~~~~gls~~~al~~aT~~~A~~lg~~-~~G~I 378 (450)
+.+.| ++++++++.+.|||+++|++ +.|+|
T Consensus 299 ~~~~g-~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 299 FEEAG-ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HHhcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 55556 99999999999999999994 56764
No 89
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.96 E-value=3.7e-26 Score=215.46 Aligned_cols=296 Identities=21% Similarity=0.289 Sum_probs=185.7
Q ss_pred eEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCC
Q 013050 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD 84 (450)
Q Consensus 5 ~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~ 84 (450)
+|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..++..+. ....+.+++.|+||+++++ +..
T Consensus 1 ~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~---~~~~~~a~~~GvTtvvd~~-~~~ 73 (338)
T cd01307 1 DVAIENGKIAAVGAALAAP---AATQIVDAGGCYVSPGWIDLHVHVYQGGTRYG---DRPDMIGVKSGVTTVVDAG-SAG 73 (338)
T ss_pred CEEEECCEEEEccCCCCCC---CCCeEEECCCCEEecCeEEeeecCCCCCcccC---CCHhHHHHcCceeEEEeCC-CCC
Confidence 6899999999999854321 24689999999999999999999988775443 3477788999999999997 443
Q ss_pred CCCCcHHHHHHHH-HHHhc--CCceEEEEeccccCCCcc-----chHHHHHH---HHcCCcEEEEecccCCCCCCCCCCH
Q 013050 85 PSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVPENAY-----NASALEAL---LNAGVLGLKSFMCPSGINDFPMTNA 153 (450)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~ 153 (450)
+ .....+.... +.... ...+++..++........ ..+.+.++ ...|+.+++.++...... ....
T Consensus 74 ~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~---~~~~ 148 (338)
T cd01307 74 A--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVG---EWGI 148 (338)
T ss_pred C--CCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeeccccc---ccCC
Confidence 3 4444433333 33333 345666666654332211 12333333 346888999887543321 1233
Q ss_pred HHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceE
Q 013050 154 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 233 (450)
Q Consensus 154 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (450)
..+.+.++.+++.|+++.+|+++... .+..++.+.+. +.
T Consensus 149 ~~l~~~~~~a~~~~~pi~vH~~~~~~-------------------------------~~~~~~~~l~~--------g~-- 187 (338)
T cd01307 149 KPLELAKKIAKEADLPLMVHIGSPPP-------------------------------ILDEVVPLLRR--------GD-- 187 (338)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCC-------------------------------CHHHHHHHhcC--------CC--
Confidence 44788899999999999999965321 12333333332 21
Q ss_pred EEEecCChh---------HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC
Q 013050 234 HIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304 (450)
Q Consensus 234 ~~~h~~~~~---------~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 304 (450)
.+.|+.... ...+.++++.+.|.. .+++... .........++++.|+
T Consensus 188 ~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~--~d~~~G~----------------------~~~~~~~~~~l~~~G~ 243 (338)
T cd01307 188 VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVI--FDVGHGT----------------------ASFSFRVARAAIAAGL 243 (338)
T ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEE--EEeCCCC----------------------CchhHHHHHHHHHCCC
Confidence 234444320 113566777777643 3222100 0001112334566776
Q ss_pred -eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 013050 305 -IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 383 (450)
Q Consensus 305 -~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ 383 (450)
...+++|...... .......+...+..+...|++++++++++|.|||++|++++.|+|++|+.
T Consensus 244 ~~~~lstD~~~~~~----------------~~~p~~~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~lgl~~~G~l~~G~~ 307 (338)
T cd01307 244 LPDTISSDIHGRNR----------------TNGPVYALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYD 307 (338)
T ss_pred CCeeecCCccccCC----------------CCCccccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCc
Confidence 4578999632110 01111223344444556799999999999999999999966899999999
Q ss_pred ccEEEEeCCC
Q 013050 384 ADLVVWEPEA 393 (450)
Q Consensus 384 ADlvv~d~~~ 393 (450)
|||++++.+.
T Consensus 308 ad~~v~~~~~ 317 (338)
T cd01307 308 ADLTVFDLKD 317 (338)
T ss_pred CCEEEEeCCC
Confidence 9999999664
No 90
>PRK10027 cryptic adenine deaminase; Provisional
Probab=99.95 E-value=9.6e-26 Score=221.80 Aligned_cols=310 Identities=18% Similarity=0.124 Sum_probs=186.8
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 81 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~ 81 (450)
..++|+|++|+|++|++..+.. .+.++||++|++|+|||||+|+|+..+.. +.+.+ .+.++.+|+|++++.|
T Consensus 48 ~~~~V~I~~GrI~~Vg~~~~~~---~~~~vIDa~G~~v~PGlIDaHvHiess~~-~p~~~---a~aal~~G~TtVv~dP- 119 (588)
T PRK10027 48 ISGPIVIKGRYIAGVGAEYADA---PALQRIDARGATAVPGFIDAHLHIESSMM-TPVTF---ETATLPRGLTTVICDP- 119 (588)
T ss_pred EeeEEEEECCEEEEeCCCCCCC---CCCeEEECCCCEEEECeEeccccCCcccC-CHhHH---HHHHHhCceEEEEcCC-
Confidence 3578999999999997643211 24689999999999999999999987643 22333 4467899999999998
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCceEEEE--e--ccccC--CCc---cchHHHHHHHH-cCCcEEEEecccCCCCCCCCC
Q 013050 82 NSDPSTISTETLKLKVDAAEKRIYVDVGF--W--GGLVP--ENA---YNASALEALLN-AGVLGLKSFMCPSGINDFPMT 151 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~--~~~---~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 151 (450)
...+.....+.+....+..... +..+.+ . +.... ++. -..++++++.+ .++.++...+.+++. -..
T Consensus 120 hei~nv~g~~gi~~~l~~a~~~-p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~glgEvMn~~~V---~~~ 195 (588)
T PRK10027 120 HEIVNVMGEAGFAWFARCAEQA-RQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYPGV---ISG 195 (588)
T ss_pred CCcccCCCHHHHHHHHHHhhhC-CCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCceeEEeccCcccc---ccC
Confidence 6766667777777766655432 232222 1 11111 111 13567777766 688899998887654 123
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050 152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 231 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (450)
+.+.+.++. .+ +++.+..|+..... ..+..-+ . + |.
T Consensus 196 d~~~~~ki~-~~--~~~~idGH~p~l~g------------------------------~~L~ay~---a-a-------Gi 231 (588)
T PRK10027 196 QNALLDKLD-AF--RHLTLDGHCPGLGG------------------------------KELNAYI---A-A-------GI 231 (588)
T ss_pred CHHHHHHHH-Hh--CCCceECCCCCCCh------------------------------HHHHHHH---H-c-------CC
Confidence 455555555 44 89999999953321 0011110 0 0 11
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhc--CCeeEEc
Q 013050 232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLS 309 (450)
Q Consensus 232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~g 309 (450)
.-.|-+. . .+...+-.++|..+..- .... ..+.+.+...+.. .-.++++
T Consensus 232 --~sDHE~~--t-~eea~eklr~Gm~v~iR--egS~----------------------~~nl~~l~~~~~~~~~~~~~l~ 282 (588)
T PRK10027 232 --ENCHESY--Q-LEEGRRKLQLGMSLMIR--EGSA----------------------ARNLNALAPLINEFNSPQCMLC 282 (588)
T ss_pred --CCCcccC--C-HHHHHHHHHCCCEEEEe--CCcc----------------------ccCHHHHHHHhhccCCCeEEEE
Confidence 1122221 1 12222222334322210 0000 0011111111111 1234688
Q ss_pred CCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEE
Q 013050 310 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 388 (450)
Q Consensus 310 tD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv 388 (450)
||......... . -.+....+.+.+ .|+++++|++|+|.|||+++|+++.|+|+||+.|||++
T Consensus 283 TDd~~~~~l~~---~--------------Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~d~G~IapG~~ADlvv 345 (588)
T PRK10027 283 TDDRNPWEIAH---E--------------GHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVL 345 (588)
T ss_pred cCCCChHHHHh---c--------------cCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEE
Confidence 88653221111 0 013333444444 89999999999999999999996589999999999999
Q ss_pred EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050 389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439 (450)
Q Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 439 (450)
+|... + .++..||++|++|+++ +.+
T Consensus 346 ld~l~--------~-----------------~~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 346 LSDAR--------K-----------------VTVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred EccCC--------C-----------------ceEEEEEECCEEeecc-ccc
Confidence 99321 0 2688999999999998 654
No 91
>PRK06846 putative deaminase; Validated
Probab=99.95 E-value=1.8e-25 Score=216.06 Aligned_cols=335 Identities=15% Similarity=0.123 Sum_probs=194.0
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-cc----------c------------
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-EW----------E------------ 59 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-~~----------~------------ 59 (450)
..+|.|++|+|++|++....+. .+.+++|++|++|+|||||+|+|+..+... .+ +
T Consensus 31 ~~~i~i~~g~I~~i~~~~~~~~--~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 108 (410)
T PRK06846 31 LCTLEIQDGKIVAIRPNKQVPD--ATLPTYDANGLLMLPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPEL 108 (410)
T ss_pred eEEEEEECCEEEEeecCCCCCC--CCCceEeCCCCEEecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHHh
Confidence 4689999999999997532211 246899999999999999999999753211 00 0
Q ss_pred --ch----HHHHHHHHhCCceEEEeCCCCCCCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHc
Q 013050 60 --GF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 131 (450)
Q Consensus 60 --~~----~~~~~~~~~~GvT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (450)
.. ......++++|+|+++++. ...+.. ...+.+..............+..+...........+.+++..+.
T Consensus 109 ~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~~~~a~~e~l~e~~~~v~~~~~a~~~~g~~~~~~~~lL~~al~~ 187 (410)
T PRK06846 109 LPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLKNLENLQAALERYKDGFTYEIVAFPQHGLLRSNSEPLMREAMKM 187 (410)
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccchHHHHHHHHHHhhCcceEEEEeccCcccCCccHHHHHHHHHHc
Confidence 00 0224456778999998885 333321 11222222222222222222222211000012334678888888
Q ss_pred CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050 132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211 (450)
Q Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 211 (450)
|+..++.+. +. .....+.+.+.++++.|+++|+++.+|..+... .....
T Consensus 188 Ga~~i~gl~-p~---~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~---------------------------~~~~~ 236 (410)
T PRK06846 188 GAHLVGGVD-PA---SVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGP---------------------------LGVAT 236 (410)
T ss_pred CCCEEeCCC-Cc---cCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCC---------------------------hhHHH
Confidence 887555331 11 112466789999999999999999999954321 01112
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCC-----hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 286 (450)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~-----~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (450)
+++.++.+.+.. . ..++++.|+.. ..+..+.++.+++.|..+.. +..
T Consensus 237 ~~~~~~~~~~~g---l--~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~--~~~--------------------- 288 (410)
T PRK06846 237 IKYLVETTEEAQ---W--KGKVTISHAFALGDLNEEEVEELAERLAAQGISITS--TVP--------------------- 288 (410)
T ss_pred HHHHHHHHHHhC---C--CCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEE--eCC---------------------
Confidence 344555555441 1 12688888863 11333445678888876653 110
Q ss_pred CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC----CHHHHHHHH
Q 013050 287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV----TLEQLASWW 362 (450)
Q Consensus 287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl----s~~~al~~a 362 (450)
+. .....+.++++.|+.+++|||+.. +... +.+.......+.. .....++ +..++++|+
T Consensus 289 ~~--~g~~p~~~l~~~Gv~v~lGtD~~~-~~~~-----------p~~~~d~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 351 (410)
T PRK06846 289 IG--RLHMPIPLLHDKGVKVSLGTDSVI-DHWS-----------PFGTGDMLEKANL---LAELYRWSDERSLSRSLALA 351 (410)
T ss_pred CC--CCCCCHHHHHhCCCeEEEecCCCC-CCCc-----------CCCCCCHHHHHHH---HHHHhcCCCHHHHHHHHHHH
Confidence 00 001124567888999999999641 1111 0011111111111 1111122 345789999
Q ss_pred hhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050 363 SERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435 (450)
Q Consensus 363 T~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~ 435 (450)
|.++ +.+++ +..|+|+|||.|||||+|.+.+... .. ....|..||++|++||..
T Consensus 352 T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~------~~------------~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 352 TGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAEA------VA------------RQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred cCCc-cccccCCCccCCCCCCcccEEEEeCCChHHH------HH------------hcCCceEEEECCEEEeee
Confidence 9984 56777 6689999999999999997642211 00 113789999999999975
No 92
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3.1e-27 Score=212.63 Aligned_cols=354 Identities=17% Similarity=0.152 Sum_probs=195.0
Q ss_pred ceeEEEeC-CEEEEeccCCCCCCCC-------CCCcEEecCCCEEeccceeecccc-CCC-----C----CCcc------
Q 013050 3 KRAVEIKE-GNIISIVSEEDWPRNS-------KTGQVVDYGEAVIMPGLIDVHAHL-DDP-----G----RTEW------ 58 (450)
Q Consensus 3 ~~~V~I~~-g~I~~Ig~~~~~~~~~-------~~~~viD~~g~~v~PG~iD~H~H~-~~~-----~----~~~~------ 58 (450)
+..+.|.+ |||+.|++......+. +..++++..|.++||||||+|+|. ... + ...|
T Consensus 27 ~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~f 106 (439)
T KOG3968|consen 27 GSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYTF 106 (439)
T ss_pred CcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhccee
Confidence 45567877 9999999865432111 345788999999999999999993 110 1 0001
Q ss_pred -------------cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc---cCCC----
Q 013050 59 -------------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL---VPEN---- 118 (450)
Q Consensus 59 -------------~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---- 118 (450)
+.+....++++++|+|++..+. + -..++...+.........+..+.......- .+..
T Consensus 107 ~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~--~-~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~ 183 (439)
T KOG3968|consen 107 PLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFS--T-LHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETT 183 (439)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhh--c-cCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhH
Confidence 1244456689999999998774 1 112222233333333333333333222111 1111
Q ss_pred ccchHHHHHHH-------HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-ChhhhhhhhhhccCc
Q 013050 119 AYNASALEALL-------NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVKLEDDT 190 (450)
Q Consensus 119 ~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~~~~~~ 190 (450)
+...+...+++ +.+...... + .-.+.++.+.+.+..++|+..++++..|.. ....++....-.
T Consensus 184 E~si~~t~~~i~~~~~~~~~~~~~~vt---~---~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff--- 254 (439)
T KOG3968|consen 184 EESIESTEDLIPKLEKLKREKVNPIVT---P---RFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFF--- 254 (439)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccc---c---cccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhh---
Confidence 11122222222 222211111 0 111357778888888999999999999983 333332221111
Q ss_pred CCccccccccCCCChHH-HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050 191 LDTRSYSTYLKTRPPSW-EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 269 (450)
Q Consensus 191 ~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 269 (450)
|+.. .....+.-..+..+ -.-.|..|+++ +.++.+.+ +|..+.. ||-....
T Consensus 255 -------------~~~~~y~~~yd~~~lL~~k--------tvlaH~~hl~d--~ei~~l~k---~g~svsh--CP~Sn~~ 306 (439)
T KOG3968|consen 255 -------------PEKLSYTDVYDKGGLLTEK--------TVLAHLEHLSD--EEIELLAK---RGCSVSH--CPTSNSI 306 (439)
T ss_pred -------------hhcccchHHHHHhcccchH--------hHhhhheecCc--hhHHHHHh---cCCceEE--CCcchhh
Confidence 1100 01112222222211 34467888887 55555444 4544443 6643211
Q ss_pred cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-
Q 013050 270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG- 348 (450)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 348 (450)
- .....++.++++.|+.+.+|||.++.+....++ ....+...+...
T Consensus 307 L-------------------~sG~~~vr~lL~~~v~VgLGtDv~~~s~l~a~r--------------~A~~~s~hL~~~~ 353 (439)
T KOG3968|consen 307 L-------------------GSGIPRVRELLDIGVIVGLGTDVSGCSILNALR--------------QAMPMSMHLACVL 353 (439)
T ss_pred h-------------------ccCCccHHHHHhcCceEeecCCccccccHHHHH--------------HHHHHHHHHHhcc
Confidence 1 011223457799999999999987543322211 011111111111
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEee---EEEE
Q 013050 349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG---KVLA 424 (450)
Q Consensus 349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~ 424 (450)
...++|+++++.+||.|||++||+ +..|++++||++|++++|.+.+.... .............++.+ ++..
T Consensus 354 ~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l-----~~~~~~~~lI~~~v~~g~drni~~ 428 (439)
T KOG3968|consen 354 DVMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPL-----YRFSGHHDLISKVVYNGDDRNIAE 428 (439)
T ss_pred CcccCCHHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcchh-----hhccchHHHHHHHHhcCCCCceEE
Confidence 236899999999999999999999 77999999999999999988742111 11110022222334444 8999
Q ss_pred EEECCeEEEe
Q 013050 425 TISRGNLVYK 434 (450)
Q Consensus 425 v~v~G~~v~~ 434 (450)
|||+|+.|++
T Consensus 429 V~V~Gk~v~~ 438 (439)
T KOG3968|consen 429 VFVAGKLVKQ 438 (439)
T ss_pred EEEccEEecc
Confidence 9999999976
No 93
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.95 E-value=1.5e-25 Score=212.30 Aligned_cols=314 Identities=24% Similarity=0.235 Sum_probs=177.4
Q ss_pred CCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----------cc-------------cchHHHHH
Q 013050 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EW-------------EGFPSGTK 66 (450)
Q Consensus 10 ~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----------~~-------------~~~~~~~~ 66 (450)
||||++|++....+ .+.++||++|++|+|||||+|+|++..... .+ .-......
T Consensus 1 ~gkI~~i~~~~~~~---~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~ 77 (359)
T cd01309 1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFK 77 (359)
T ss_pred CCEEEEEcCCCCCC---CCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHH
Confidence 79999999875533 367899999999999999999999643111 00 01233456
Q ss_pred HHHhCCceEEEeCCCCCCCCCCcHH---HHH--HHHHHH-hcCCceEEEEecc-cc-CC----Cc-c---chHHHHHHHH
Q 013050 67 AAAAGGITTLIDMPLNSDPSTISTE---TLK--LKVDAA-EKRIYVDVGFWGG-LV-PE----NA-Y---NASALEALLN 130 (450)
Q Consensus 67 ~~~~~GvT~~~~~~~~~~~~~~~~~---~~~--~~~~~~-~~~~~~~~~~~~~-~~-~~----~~-~---~~~~~~~~~~ 130 (450)
.++++|||++...| +......... .+. ...+.. .....+.+.+... .. .. .+ . ....+++...
T Consensus 78 ~a~~~GvT~~~v~p-~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~ 156 (359)
T cd01309 78 RARAGGVTTVQVLP-GSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFI 156 (359)
T ss_pred HHHhcCceEEEecC-CCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHH
Confidence 88999999998876 2221111100 000 000111 1122222221100 00 00 00 0 0111111111
Q ss_pred c----CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChH
Q 013050 131 A----GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206 (450)
Q Consensus 131 ~----g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 206 (450)
. .....+ +.... .. +......+..+...++. .++|.+|+....
T Consensus 157 ~a~~y~~~~~~-~~~~~--~~-~~~~d~~l~~l~~~~~~-~~~v~vHa~~~~---------------------------- 203 (359)
T cd01309 157 KAQEYGRKYDL-GKNAK--KD-PPERDLKLEALLPVLKG-EIPVRIHAHRAD---------------------------- 203 (359)
T ss_pred HHHHHHHHhhh-hhhcc--cC-CCCCCccHHHHHHHHcC-CeeEEEEeCCHH----------------------------
Confidence 0 000000 00000 00 01122233444444443 389999995432
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 286 (450)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (450)
.+..+++++++. +.++.+.|+... .+.++++++.++.+.+ +|....... ...
T Consensus 204 ----~i~~~l~~~~e~-------g~~~~i~H~~~~---~~~~~~la~~gv~v~~--~P~~~~~~~------------~~~ 255 (359)
T cd01309 204 ----DILTAIRIAKEF-------GIKITIEHGAEG---YKLADELAKHGIPVIY--GPTLTLPKK------------VEE 255 (359)
T ss_pred ----HHHHHHHHHHHc-------CCCEEEECchhH---HHHHHHHHHcCCCEEE--Ccccccccc------------HHH
Confidence 367788888776 777888998752 5566777777876665 443211100 000
Q ss_pred CCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 013050 287 IRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 365 (450)
Q Consensus 287 ~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~ 365 (450)
..........+++.| +.++++||+.... .. .+..........+++.+++++++|.|
T Consensus 256 --~~~~~~~~~~l~~aGGv~valgsD~~~~~-~~--------------------~l~~~~~~a~~~gl~~~~al~~~T~n 312 (359)
T cd01309 256 --VNDAIDTNAYLLKKGGVAFAISSDHPVLN-IR--------------------NLNLEAAKAVKYGLSYEEALKAITIN 312 (359)
T ss_pred --hhcchhhHHHHHHcCCceEEEECCCCCcc-ch--------------------hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 011123345667787 9999999973211 00 12222233456789999999999999
Q ss_pred hhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050 366 PAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433 (450)
Q Consensus 366 ~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 433 (450)
||+++|+ ++.|+|++|+.|||||+|.++.. . ..+|..||++|++||
T Consensus 313 ~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~-~---------------------~~~v~~v~i~G~~v~ 359 (359)
T cd01309 313 PAKILGIEDRVGSLEPGKDADLVVWNGDPLE-P---------------------TSKPEQVYIDGRLVY 359 (359)
T ss_pred HHHHhCCCCCcccCCCCCccCEEEECCCccc-c---------------------cCcccEEEECCEEeC
Confidence 9999999 66899999999999999977411 0 137899999999986
No 94
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=99.95 E-value=4.3e-25 Score=208.90 Aligned_cols=336 Identities=16% Similarity=0.127 Sum_probs=173.7
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC-------CcccchHHHHHHHHhCCceE
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWEGFPSGTKAAAAGGITT 75 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~-------~~~~~~~~~~~~~~~~GvT~ 75 (450)
.++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|...... ...+.+....+.++++|||+
T Consensus 18 ~~~v~IedgkI~~I~~~~~~~---~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt 94 (382)
T PRK11170 18 DHAVVIADGLIEAVCPVAELP---PGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTS 94 (382)
T ss_pred CCEEEEECCEEEEecCCccCC---CCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeE
Confidence 468999999999998754322 24579999999999999999999753321 12345667777889999999
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHH
Q 013050 76 LIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 155 (450)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 155 (450)
++++. .+.+.......+....+.........+++|......++. +.|+-.-.. + ...+.++
T Consensus 95 ~lpT~-it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~---------~~Gah~~~~-~--------~~p~~~~ 155 (382)
T PRK11170 95 FLPTL-ITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLV---------KKGTHNPEF-I--------RKPDAEM 155 (382)
T ss_pred Eeeec-cCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcc---------cCCCCCHHH-h--------cCcCHHH
Confidence 99986 443333333334444333222233444444322222210 111100000 0 0122333
Q ss_pred HHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 013050 156 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 235 (450)
Q Consensus 156 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (450)
++...+.+ ..+++..-+.+.. . .++++.+.+. |+.+.+
T Consensus 156 ~~~~~~~~--~~i~~iTlAPE~~--------------------------------~-~~~i~~l~~~-------gi~vs~ 193 (382)
T PRK11170 156 VDFLCENA--DVITKVTLAPEMV--------------------------------D-AEVIRKLVEA-------GIVVSA 193 (382)
T ss_pred HHHHHhcc--CCEEEEEECCCCC--------------------------------c-HHHHHHHHHC-------CcEEEe
Confidence 33333322 1222222221110 0 1233333332 555555
Q ss_pred EecCChhHHHHHHHHHHhCCCcEEEecCcc---hhcccc----cccCCCCCceEEcCCC--CChhhHHHHHHHHhcCCee
Q 013050 236 VHLSDASSSLDLLMEAKTNGDSITVETCPH---YLAFSA----EEIPDGDTRFKCAPPI--RDAANKEKLWEALMDGHID 306 (450)
Q Consensus 236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~~~ 306 (450)
-|.. .+.+++.++.+.|+....-.+.- ...-.+ ..+...+........- -.+...+.++++. |-.+
T Consensus 194 GHs~---A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~~~k--~~~~ 268 (382)
T PRK11170 194 GHSN---ATYEEAKAGFRAGITFATHLYNAMPYITGREPGLVGAILDEPDVYCGIIADGLHVDYANIRNAKRLK--GDKL 268 (382)
T ss_pred eCCc---CCHHHHHHHHHcCCCEEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcCcccCCHHHHHHHHHhc--CCcE
Confidence 5543 33444444444444321100000 000000 0000001111111111 0122333334443 3456
Q ss_pred EEcCCCCCCChh----hhc------ccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CC
Q 013050 307 MLSSDHSPTVPE----LKL------LDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VS 374 (450)
Q Consensus 307 ~~gtD~~~~~~~----~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-~~ 374 (450)
++-||.....-. ..+ ...|......+.+.+....+...++.+ ...+++++++++|+|.|||+++|+ +.
T Consensus 269 ~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~~ 348 (382)
T PRK11170 269 CLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVDKR 348 (382)
T ss_pred EEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 788896432110 000 111111112223455455555555544 457999999999999999999999 55
Q ss_pred CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 375 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
.|+|++|+.|||+|+|.+. +|..||++|++++.
T Consensus 349 ~G~i~~G~~ADlvvld~~~---------------------------~v~~v~~~G~~~~~ 381 (382)
T PRK11170 349 LGSIEAGKVANLTAFTRDF---------------------------KITKTIVNGNEVVT 381 (382)
T ss_pred ccccCCCCcCCEEEECCCC---------------------------cEEEEEECCEEeec
Confidence 7999999999999999542 68999999999874
No 95
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=99.94 E-value=6.1e-25 Score=207.17 Aligned_cols=334 Identities=19% Similarity=0.177 Sum_probs=174.6
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---cccchHHHHHHHHhCCceEEEeC
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
+++|.|+||+|++|++..+.+ +..+++|++|++|+|||||+|+|....... ..+.+....+.+++.|||+++++
T Consensus 21 ~~~i~V~dGkI~~I~~~~~~~---~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~~~~~~~~~GvTt~l~t 97 (380)
T TIGR00221 21 NGAVGINDGKISTVSTEAELE---PEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPT 97 (380)
T ss_pred ccEEEEECCEEEEEcccccCC---CCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHHHHHHHHhcCeeEEeee
Confidence 478999999999998754322 245799999999999999999998543211 22568888999999999999998
Q ss_pred CCCCCCCCCcHHHHHHHHHHHh-cCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050 80 PLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158 (450)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (450)
. .+.+.....+.+....+... ......++++......++. +.|+..-.. ....+.+++++
T Consensus 98 ~-~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~---------~~Gah~~~~---------i~~p~~~~~~~ 158 (380)
T TIGR00221 98 L-ITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPE---------KKGAHPPEY---------IREPDVELFKK 158 (380)
T ss_pred c-cCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChh---------hcCCCCHHH---------hhCcCHHHHHH
Confidence 6 45444444444444433321 1233344444322222210 111111000 01133444445
Q ss_pred HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
..+.+. ..+.+..-+.+.. .-.++++.+.+. |+.+.+-|.
T Consensus 159 ~~~~~~-~~i~~vTlAPE~~--------------------------------~~~~~i~~l~~~-------gi~vs~GHs 198 (380)
T TIGR00221 159 FLCEAG-GVITKVTLAPEED--------------------------------QHFELIRHLKDA-------GIIVSAGHT 198 (380)
T ss_pred HHHhcC-CCEEEEEECCCCC--------------------------------ChHHHHHHHHHC-------CeEEEeeCC
Confidence 444332 2222222221100 012333333332 555555553
Q ss_pred CChhHHHHHHHHHHhCCCcEEEecCcc---hhcccc----cccCCCCCceEEcCCC--CChhhHHHHHHHHhcCC-eeEE
Q 013050 239 SDASSSLDLLMEAKTNGDSITVETCPH---YLAFSA----EEIPDGDTRFKCAPPI--RDAANKEKLWEALMDGH-IDML 308 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~-~~~~ 308 (450)
. .+.+++.++.+.|+....-.+.- ...-.+ ..+...+........- -.+...+.+++.. |. .+++
T Consensus 199 ~---A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~k--g~~~~~l 273 (380)
T TIGR00221 199 N---ATYELAKAAFKAGATHATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLK--GDSKLCL 273 (380)
T ss_pred C---CCHHHHHHHHHcCCCeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhc--CCCcEEE
Confidence 3 33444444444444221100000 000000 0000011111111110 0112222233332 32 5678
Q ss_pred cCCCCCCCh----hhhc------ccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCC
Q 013050 309 SSDHSPTVP----ELKL------LDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKG 376 (450)
Q Consensus 309 gtD~~~~~~----~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G 376 (450)
.||.....- ...+ ...|......+.+.|....+...+..+.+ .+++++++++++|.|||+++|+ ++.|
T Consensus 274 vtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~~~G 353 (380)
T TIGR00221 274 VTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARALGIDDRLG 353 (380)
T ss_pred EeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCCCCCCc
Confidence 889643211 0010 11122222223355655666665555554 5799999999999999999999 4579
Q ss_pred ccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 430 (450)
Q Consensus 377 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~ 430 (450)
+|++|+.|||+|+|.+. +|..||++|+
T Consensus 354 ~i~~G~~ADlvv~d~~~---------------------------~v~~t~~~G~ 380 (380)
T TIGR00221 354 SVTVGKDANLVVFTPDF---------------------------EVILTIVNGN 380 (380)
T ss_pred ccCCCCcCCEEEECCCC---------------------------CEEEEEeCCC
Confidence 99999999999999552 6889999995
No 96
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.94 E-value=5e-24 Score=203.62 Aligned_cols=386 Identities=19% Similarity=0.248 Sum_probs=204.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc-----c-----------------
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW-----E----------------- 59 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~-----~----------------- 59 (450)
..++|+|+||+|++|++.. ++.+++|++|++|+|||||+|+|+........ |
T Consensus 16 ~~~dI~IedGkIv~Vg~~~------~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~~~~~~~~~~~~~ 89 (541)
T cd01304 16 EKMDIFIRDGKIVESSSGA------KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRDPVPKGALRRAGV 89 (541)
T ss_pred cccEEEEECCEEEEEccCC------CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhccccccccccccCC
Confidence 3578999999999998642 24579999999999999999999864311100 0
Q ss_pred -----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE---EEEecc-------ccCCCccchHH
Q 013050 60 -----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD---VGFWGG-------LVPENAYNASA 124 (450)
Q Consensus 60 -----~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~ 124 (450)
.....-..+.+-|+|++++.. ..| ......=++..+ ...++ +..++. +.+.+.+..++
T Consensus 90 g~~~pst~~tgy~ya~mGytt~~e~a--~~p-~~a~h~h~e~~~----~p~~d~~~~~~~gnn~~~~~~~~~~~~~~~~~ 162 (541)
T cd01304 90 GFSVPSTLATGYRYAEMGYTTAFEAA--MPP-LNARHTHEEMAD----TPILDKGAYPLLGNNWFVLEYLRDGDMEKLAA 162 (541)
T ss_pred CccCCCchHhhhHHHhcCcceeeccc--CCc-ccchhhhHHhcc----CccccccceEEecchHHHHHHHhcCCHHHHHH
Confidence 011112356677999999874 111 111111111111 11111 111111 11111112222
Q ss_pred -HHHHHH-cCCcEEEEecccC---------------CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhc
Q 013050 125 -LEALLN-AGVLGLKSFMCPS---------------GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 187 (450)
Q Consensus 125 -~~~~~~-~g~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 187 (450)
+..+++ ....++|....-. ....+...+.+.++.+.+.++++|+|..+|.+-.+.
T Consensus 163 ~vaw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~nnl-------- 234 (541)
T cd01304 163 YVAWTLKASKGYGIKVVNPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHCNNL-------- 234 (541)
T ss_pred HHHHHHHhccceEEEEECCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEccccC--------
Confidence 223333 3566777642100 001122345677777888889999998888853321
Q ss_pred cCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC------C----hhHHHHHHHHHHhCCCc
Q 013050 188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS------D----ASSSLDLLMEAKTNGDS 257 (450)
Q Consensus 188 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~------~----~~~~~~~~~~~~~~g~~ 257 (450)
+.|- +.+...+.+++++..+.... .-.+|++|+. + -....+.+.++...+..
T Consensus 235 --------------g~pg--n~~~t~~t~~~~~~~~~~~~--~~~~h~tH~qfhsyg~~~~~~~~s~a~~i~~~~n~~~~ 296 (541)
T cd01304 235 --------------GVPG--NYETTLETMKAAEGVKPDPR--RQVLHLTHVQFHSYGGTSWRDFESGAERIADYVNANDH 296 (541)
T ss_pred --------------CCCC--cHHHHHHHHHHhhcCCCccc--cceeEeeeeeEEeeccCCcccHhHHHHHHHHHHHcCCC
Confidence 1111 12334566666663211000 1148888884 1 12455666776677766
Q ss_pred EEEecCcch----hccccc---cc-----CC-----------CCCceEEcCCC-CChhhHHHH--------HHHHhcCCe
Q 013050 258 ITVETCPHY----LAFSAE---EI-----PD-----------GDTRFKCAPPI-RDAANKEKL--------WEALMDGHI 305 (450)
Q Consensus 258 v~~~~~~~~----~~~~~~---~~-----~~-----------~~~~~~~~~~~-~~~~~~~~l--------~~~~~~g~~ 305 (450)
+++++.... ...+.+ .+ .. .+.. +.|-. +.......+ .-.+++--.
T Consensus 297 it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~G--vvp~~y~~k~~v~~lqwaiglEl~ll~~dp~~ 374 (541)
T cd01304 297 VTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSG--VVPFIYSPKNPVNALQWAIGLELFLLIDDPWK 374 (541)
T ss_pred EEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCc--eEEeEecCCCCchHHHHHHHHHHHHHhCCcce
Confidence 776654431 111110 00 00 0110 11111 111111111 122233347
Q ss_pred eEEcCCCCCCChhhhcccCCCccccCCCCcch---hhHHHHH---HHHH--------HhcCCCHHHHHHHHhhchhHHhC
Q 013050 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSL---QFVLPVT---WSYG--------RKYGVTLEQLASWWSERPAKLAG 371 (450)
Q Consensus 306 ~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~---~~~~--------~~~gls~~~al~~aT~~~A~~lg 371 (450)
+++.|||. . .++|..-|.-+.-+ ..+...+ -..+ .+..+|++++++++|.|||++||
T Consensus 375 ~~~tTDhP-n--------~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nPAKiLG 445 (541)
T cd01304 375 VILTTDHP-N--------GGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLG 445 (541)
T ss_pred EEeecCCC-C--------CCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 89999963 2 22332211100000 0000000 0000 12337999999999999999999
Q ss_pred CCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050 372 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448 (450)
Q Consensus 372 ~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~ 448 (450)
+++.|+|++|+.|||+|+|.++. ++... ++.. . ....++|..||++|++|+++|+++....|+.+.
T Consensus 446 L~~kG~L~~G~~ADLvIfD~n~~-~v~~~-dl~s------~---~~~~gkV~~Tiv~GkvVv~dGeiv~~~~G~~l~ 511 (541)
T cd01304 446 LSDKGHLGVGADADIAIYDDDPD-QVDPS-DYEK------V---EKAFSRAAYVLKDGEIVVKDGEVVAEPWGRTYW 511 (541)
T ss_pred CCCCCccCCCCcCCEEEEeCCcC-ccCch-hhcC------c---eeecCcEEEEEECCEEEEECCEEccCCCCcEEE
Confidence 95579999999999999998864 43322 2111 1 223468999999999999999999877787653
No 97
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.7e-24 Score=196.35 Aligned_cols=332 Identities=19% Similarity=0.242 Sum_probs=185.9
Q ss_pred ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----cccchHHHHHHHHhCCceEEEe
Q 013050 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----EWEGFPSGTKAAAAGGITTLID 78 (450)
Q Consensus 3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----~~~~~~~~~~~~~~~GvT~~~~ 78 (450)
.+.|.|+||+|.+|.+ .+.+ .+.+++|.+|.+|.|||||.|+|....... ..+.+....+.++++|+|+++.
T Consensus 18 ~~~v~i~dg~I~~i~~-~~~p---~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLp 93 (380)
T COG1820 18 GGAVVIEDGKIEAVVP-AELP---ADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLP 93 (380)
T ss_pred CcEEEEcCCEEEEEec-CcCC---CcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHHHHhhhcCeeeeee
Confidence 4689999999999998 2333 478999999999999999999998765322 2245777888999999999987
Q ss_pred CCCCCCCCCCcHHHHHHHHHH----HhcCC--ceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCC
Q 013050 79 MPLNSDPSTISTETLKLKVDA----AEKRI--YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 152 (450)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 152 (450)
.. -+ ...+.+....+. ..... .+.+++-|++.+.. +.|+..... ....+
T Consensus 94 T~-iT----~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~-----------kkGAh~~~~---------ir~~~ 148 (380)
T COG1820 94 TL-IT----ASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPE-----------KKGAHNPEY---------IRPPD 148 (380)
T ss_pred ec-cc----CCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHh-----------hccCCCHHH---------hCCCC
Confidence 64 22 334444333332 22111 12333333222111 122211111 11346
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050 153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232 (450)
Q Consensus 153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (450)
.+++.+.++.++..-..+.+-++.... .+++..+.+. ++.
T Consensus 149 ~~~~~~~~~~a~g~i~~vTlAPE~~~~---------------------------------~e~i~~l~~~-------gii 188 (380)
T COG1820 149 PEELEQLIAAADGLIKLVTLAPELDGT---------------------------------KELIRLLANA-------GIV 188 (380)
T ss_pred HHHHHHHHhhccCceEEEEECCCCCCC---------------------------------HHHHHHHHhC-------CeE
Confidence 677777776666533334444433211 2334444433 777
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc-c------cccCCCCCceEEcCCCCChhhHHHHHHHH--hcC
Q 013050 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS-A------EEIPDGDTRFKCAPPIRDAANKEKLWEAL--MDG 303 (450)
Q Consensus 233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g 303 (450)
+.+-|.. .+.+..+.+.+.|+....-.+.-.--+. + ..+...+........ ..--+...+.-++ +-.
T Consensus 189 vs~GHS~---Atye~~~~a~~~Ga~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaD-G~HVhP~~~~ia~~~kg~ 264 (380)
T COG1820 189 VSIGHSN---ATYEQARAAFEAGATFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIAD-GVHVHPAAIRLALKAKGG 264 (380)
T ss_pred EEecCcc---ccHHHHHHHHHhCccEEEeeccCCCCCCCCCCcccceeecCCCeEEEEEcc-CcccCHHHHHHHHhccCC
Confidence 7777744 5566666666666543321111100000 0 000000111111110 0001111122122 223
Q ss_pred CeeEEcCCCCCCChh----hhc------ccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 304 HIDMLSSDHSPTVPE----LKL------LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 304 ~~~~~gtD~~~~~~~----~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
-.+++-||.....-. ..+ ...|......+.+.|....+...++. ....+++++||++|+|.+||+++|+
T Consensus 265 ~~i~LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl 344 (380)
T COG1820 265 DKIVLVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGL 344 (380)
T ss_pred ceEEEEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCC
Confidence 457888996432111 000 11221111233344555555554444 4566899999999999999999999
Q ss_pred -CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 373 -VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 373 -~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
+++|+|++||.||||+||.|. +|..||++|++++.
T Consensus 345 ~~~~G~i~~G~~Adlvvld~d~---------------------------~v~~T~i~G~~~~~ 380 (380)
T COG1820 345 DDRLGSIKPGKDADLVVLDDDL---------------------------NVKATWINGEKVFN 380 (380)
T ss_pred cCcccccCCCcccCEEEECCCC---------------------------cEEEEEECCEEeeC
Confidence 778999999999999999662 78999999999873
No 98
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.94 E-value=5.6e-24 Score=206.01 Aligned_cols=282 Identities=21% Similarity=0.241 Sum_probs=182.7
Q ss_pred ecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEec
Q 013050 33 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 112 (450)
Q Consensus 33 D~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (450)
|++|++|+|||||+|+|+..+... .....+.++.+|||++++.+ ...+.....+.+....+.. .+.++++.++.
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a-~~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDA-KKTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHH-hCCCceEEEeC
Confidence 789999999999999999876533 34567788999999999997 5555566777777776654 44466665544
Q ss_pred ccc-CCCc-----c--chHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhh
Q 013050 113 GLV-PENA-----Y--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183 (450)
Q Consensus 113 ~~~-~~~~-----~--~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 183 (450)
+.. +... . ..+++.++.+ .++.+++.++.++.. ....+.+.+.++.|+++|+++.+|+.....
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v----~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~---- 146 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV----IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG---- 146 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc----cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH----
Confidence 321 1111 1 3677888877 599999998766431 346678999999999999999999954221
Q ss_pred hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecC
Q 013050 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 263 (450)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~ 263 (450)
..+...+. . +... .|.+. ...+.++.+ ++|..+.. .
T Consensus 147 --------------------------~~L~a~l~----a-------Gi~~--dH~~~--~~eea~e~l-~~G~~i~i--~ 182 (422)
T cd01295 147 --------------------------EELNAYMA----A-------GIST--DHEAM--TGEEALEKL-RLGMYVML--R 182 (422)
T ss_pred --------------------------HHHHHHHH----c-------CCCC--CcCCC--cHHHHHHHH-HCCCEEEE--E
Confidence 11222221 1 2111 35443 222333333 56654443 2
Q ss_pred cchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHh--cCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHH
Q 013050 264 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM--DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 341 (450)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (450)
+... ....+.+...+. .+..++++||..+...... ...+
T Consensus 183 ~g~~----------------------~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~~-----------------~g~~ 223 (422)
T cd01295 183 EGSI----------------------AKNLEALLPAITEKNFRRFMFCTDDVHPDDLLS-----------------EGHL 223 (422)
T ss_pred Cccc----------------------HhhHHHHHHhhhhccCCeEEEEcCCCCchhhhh-----------------cchH
Confidence 1110 111222222232 4688999999742211110 0113
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeE
Q 013050 342 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 421 (450)
Q Consensus 342 ~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (450)
....+.+...+++++++++++|.|||+++++++.|+|+||+.|||+++|... . .+
T Consensus 224 ~~v~r~a~~~g~s~~eal~~aT~n~A~~~gl~~~G~i~~G~~AD~vv~~~~~--------~-----------------~~ 278 (422)
T cd01295 224 DYIVRRAIEAGIPPEDAIQMATINPAECYGLHDLGAIAPGRIADIVILDDLE--------N-----------------FN 278 (422)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCcccCCCCcCCEEEECCCC--------C-----------------Cc
Confidence 3333445567899999999999999999999668999999999999998211 0 26
Q ss_pred EEEEEECCeEEEecC
Q 013050 422 VLATISRGNLVYKEG 436 (450)
Q Consensus 422 v~~v~v~G~~v~~~g 436 (450)
|..||++|++||+.-
T Consensus 279 v~~v~~~G~~v~~r~ 293 (422)
T cd01295 279 ITTVLAKGIAVVERH 293 (422)
T ss_pred eEEEEECCeEEEEec
Confidence 889999999999743
No 99
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.94 E-value=6.7e-24 Score=203.79 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=67.9
Q ss_pred cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050 351 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 430 (450)
Q Consensus 351 ~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~ 430 (450)
..+|++++++|+|.|||++||+++.|+|++|+.|||+|+|.++.... .. ...+. .....+++||++|+
T Consensus 428 Re~sL~EI~~mtTanPAkaLGL~dkG~L~pGa~ADIaI~D~~~~~~~-~~---------~~~v~--~~~~~v~~Tik~G~ 495 (556)
T TIGR03121 428 REYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVD-TD---------YADVE--KAFSTALYVFKDGE 495 (556)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEeCcccccC-Cc---------hHHHh--hccCCccEEEECCE
Confidence 45999999999999999999996579999999999999997653221 00 11111 11146899999999
Q ss_pred EEEecCcccCCCCCcccc
Q 013050 431 LVYKEGNHAPAACGSPIL 448 (450)
Q Consensus 431 ~v~~~g~~~~~~~g~~~~ 448 (450)
+|+++|+++....||.+.
T Consensus 496 vV~~dGei~~~~~G~~~~ 513 (556)
T TIGR03121 496 IVVKDGEIVETPWGRTYW 513 (556)
T ss_pred EEEECCEEccCCCCcEEE
Confidence 999999999998898764
No 100
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.93 E-value=8e-25 Score=216.62 Aligned_cols=186 Identities=18% Similarity=0.161 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 227 (450)
Q Consensus 148 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 227 (450)
.+.++.+.+.++++.|+++|++|.+|+..... ++.+++..+......+
T Consensus 289 ~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~--------------------------------i~~~l~~~~~~~~~~g 336 (479)
T cd01300 289 LLLISPEELEELVRAADEAGLQVAIHAIGDRA--------------------------------VDTVLDALEAALKDNP 336 (479)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEEEecHHH--------------------------------HHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999954322 2333333332222222
Q ss_pred CCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC--hhhHHHHHHHHhcCCe
Q 013050 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD--AANKEKLWEALMDGHI 305 (450)
Q Consensus 228 ~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~g~~ 305 (450)
..+.+..+.|+... +.+.++++++.|+.+. ++|.+........... .+.. ......+..+++.|+.
T Consensus 337 ~~~~r~~i~H~~~~--~~~~~~~l~~~gv~~~--~~P~~~~~~~~~~~~~--------~lg~~~~~~~~p~~~~~~~Gv~ 404 (479)
T cd01300 337 RADHRHRIEHAQLV--SPDDIPRFAKLGVIAS--VQPNHLYSDGDAAEDR--------RLGEERAKRSYPFRSLLDAGVP 404 (479)
T ss_pred CCCCCceeeecccC--CHHHHHHHHHcCCceE--eCcccccCchHHHHHh--------cccHHHHhcCchHHHHHHCCCe
Confidence 23567888998873 4567788888886544 4777654332211000 0110 0122345677889999
Q ss_pred eEEcCCCCCC--ChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCC
Q 013050 306 DMLSSDHSPT--VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGN 382 (450)
Q Consensus 306 ~~~gtD~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~ 382 (450)
+++|||+.+. ++...+.. +.......... ....+.++|++++++++|.|||+++|+ +++|+|++||
T Consensus 405 v~lGSD~~~~~~~p~~~~~~---------av~~~~~~~~~--~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk 473 (479)
T cd01300 405 VALGSDAPVAPPDPLLGIWA---------AVTRKTPGGGV--LGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGK 473 (479)
T ss_pred eeccCCCCCCCCCHHHHHHH---------HheeeCCCCCC--CCCccccCCHHHHHHHHHHHHHHHhccccccccccCCc
Confidence 9999997433 11111000 00000000000 001245799999999999999999999 7799999999
Q ss_pred CccEEE
Q 013050 383 HADLVV 388 (450)
Q Consensus 383 ~ADlvv 388 (450)
+|||||
T Consensus 474 ~ADlvv 479 (479)
T cd01300 474 LADFVV 479 (479)
T ss_pred ccceeC
Confidence 999986
No 101
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.93 E-value=1.8e-24 Score=206.04 Aligned_cols=325 Identities=19% Similarity=0.219 Sum_probs=175.9
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC-CC--cccchHHHHHHHHhCCceEEEe
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT--EWEGFPSGTKAAAAGGITTLID 78 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~-~~--~~~~~~~~~~~~~~~GvT~~~~ 78 (450)
.+++|.|++|+|++|++..+.+ ...+++|++|++|+|||||+|+|...+. +. ..+++....+.++++|||++++
T Consensus 15 ~~~~i~i~~g~I~~i~~~~~~~---~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~ 91 (374)
T cd00854 15 EDGAVLVEDGKIVAIGPEDELE---EADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLP 91 (374)
T ss_pred cccEEEEECCEEEEecCCCCcc---cCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeec
Confidence 3578999999999998754322 2458999999999999999999986532 11 2456778889999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcC-CceEE--EEeccccCCC-----------ccchHHHHHHHHcCCcEEEEecccCC
Q 013050 79 MPLNSDPSTISTETLKLKVDAAEKR-IYVDV--GFWGGLVPEN-----------AYNASALEALLNAGVLGLKSFMCPSG 144 (450)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~ 144 (450)
++ .+.+.....+.+..+.+..+.. ....+ ..-++..... ....++++++++.+...+|.+.
T Consensus 92 t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~t---- 166 (374)
T cd00854 92 TT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLVT---- 166 (374)
T ss_pred cc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEEE----
Confidence 86 4443333333444444433322 12222 2223322211 1234678888887777777753
Q ss_pred CCCCCCCCHHHH--HHHHHHHHhcCCcEE-EecCC-hhhhhhhhhhccCcCCccccccccCCCChH--HHHHHHHHHHHH
Q 013050 145 INDFPMTNASHI--KEGLSVLARYKRPLL-VHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPS--WEEAAIRELLTV 218 (450)
Q Consensus 145 ~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~l 218 (450)
..+|.. .++++.++++|+.+. .|... .......+..+.....+. ....+.. .+...+...++-
T Consensus 167 ------laPE~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~~G~~~~tH~-----~n~m~~~~~r~~~~~~a~l~~ 235 (374)
T cd00854 167 ------LAPELDGALELIRYLVERGIIVSIGHSDATYEQAVAAFEAGATHVTHL-----FNAMSPLHHREPGVVGAALSD 235 (374)
T ss_pred ------ECCCCCChHHHHHHHHHCCeEEEeeCCcCCHHHHHHHHHcCCCeeeEC-----CCCCCCcCCCCCcHHHHhhcC
Confidence 333444 688999999999995 99863 233444443322221111 1111110 011111111110
Q ss_pred HHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHH
Q 013050 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWE 298 (450)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (450)
- .+.-+...+..|+.. +.+..+.+.+.. -.+.. ++......+. + +..+... ....
T Consensus 236 ~------~~~~~li~dg~Hv~~--~~~~~~~r~~g~-~~~~l--vtD~~~~~G~--~--~g~y~~~----~~~~------ 290 (374)
T cd00854 236 D------DVYAELIADGIHVHP--AAVRLAYRAKGA-DKIVL--VTDAMAAAGL--P--DGEYELG----GQTV------ 290 (374)
T ss_pred C------CCeEEEEcCCCcCCH--HHHHHHHHhcCC-CcEEE--EeccccccCC--C--CCeEEEC----CEEE------
Confidence 0 000022223344443 444444444311 11111 1211111000 0 0000000 0000
Q ss_pred HHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCC
Q 013050 299 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKG 376 (450)
Q Consensus 299 ~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G 376 (450)
....+ ...+.++ ...+....+...+..+. ..++|++++++|+|.|||+++|+ ++.|
T Consensus 291 ~~~~~-~~~~~~g---------------------~laG~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~~~~G 348 (374)
T cd00854 291 TVKDG-VARLADG---------------------TLAGSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDDRKG 348 (374)
T ss_pred EEECC-EEEcCCC---------------------CeeehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCCCCcC
Confidence 00000 1111111 22333344444444444 45799999999999999999999 5689
Q ss_pred ccccCCCccEEEEeCC
Q 013050 377 AIAIGNHADLVVWEPE 392 (450)
Q Consensus 377 ~I~~G~~ADlvv~d~~ 392 (450)
+|++|+.|||+++|.+
T Consensus 349 ~i~~G~~ADlvv~d~~ 364 (374)
T cd00854 349 SLKPGKDADLVVLDDD 364 (374)
T ss_pred CcCCCCcCCEEEECCC
Confidence 9999999999999965
No 102
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.93 E-value=2.6e-23 Score=198.39 Aligned_cols=328 Identities=19% Similarity=0.221 Sum_probs=176.4
Q ss_pred eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCC-CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 82 (450)
Q Consensus 4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g-~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~ 82 (450)
.+|+|+||||++|++.... ++.+++|++| ++|+|||||+|+|+..+.....+++. ..++.+|||++++++ .
T Consensus 16 ~~v~i~~g~I~~v~~~~~~----~~~~~iD~~g~~~l~PG~ID~H~H~~~~~~~~~~~~~---~~a~~~GvTt~~~~~-~ 87 (365)
T TIGR03583 16 VDIAIEDGKIAAVGTTITG----SAKQTIDLEGETYVSAGWIDDHTHCFPKSALYYDEPD---EIGVKTGVTTVVDAG-S 87 (365)
T ss_pred eEEEEECCEEEEecCCCCC----CCCeEEECCCCeEEecCEEEeeeccCCCcccccCCHh---HhhhcCceeEEEeCC-C
Confidence 4899999999999864322 2458999999 99999999999999755433333332 346889999999986 3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCC--ceEEEEeccccCC-----CccchHHHHHHHH---cCCcEEEEecccCCCCCCCCCC
Q 013050 83 SDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-----NAYNASALEALLN---AGVLGLKSFMCPSGINDFPMTN 152 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~ 152 (450)
+. ..+.+.+....+...... .+.+..++..... .....+.+.++.+ .++.+++.+++.....+ ...+
T Consensus 88 ~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E-~gl~ 164 (365)
T TIGR03583 88 TG--ADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGD-NGIE 164 (365)
T ss_pred CC--CCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEeeccccccc-CCcC
Confidence 32 244555554444332211 1222222322111 1123344454444 24667777765332111 1223
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050 153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232 (450)
Q Consensus 153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (450)
+..+.+.+..+ +.+++|.+|++.... ...++...... + .
T Consensus 165 ~~~~~~~l~~~-~~~~pv~vH~~~a~~-------------------------------~~~~i~~~~~~--------g-~ 203 (365)
T TIGR03583 165 PLEIAKQIQQE-NLELPLMVHIGSAPP-------------------------------ELDEILALMEK--------G-D 203 (365)
T ss_pred HHHHHHHHHHh-cCCCcEEEEeCCCcc-------------------------------CHHHHHHHhcC--------C-C
Confidence 44555555444 789999999965431 01233332221 2 1
Q ss_pred EEEEecCChh---------HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC
Q 013050 233 LHIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303 (450)
Q Consensus 233 ~~~~h~~~~~---------~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 303 (450)
.+.|+.+.. ...+.+......|. +++...+.. + ........+...+
T Consensus 204 -~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~--i~d~~hg~~-----------------~-----~~~~~~~~~~~~~ 258 (365)
T TIGR03583 204 -VLTHCFNGKPNGILRETGEVKPSVLEAYNRGV--ILDVGHGTA-----------------S-----FSFHVAEKAKRAG 258 (365)
T ss_pred -eeeeeecCCCCCCCCCcchHHHHHHHHHhCeE--EEEeCCCCC-----------------C-----chHHHHHHHHhCC
Confidence 346665420 11244444444443 332211000 0 0111112222233
Q ss_pred C-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCC
Q 013050 304 H-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN 382 (450)
Q Consensus 304 ~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~ 382 (450)
+ ..+.++|.. . .+...+....+......+...|++++++++++|.|||++||+++.|+|++|+
T Consensus 259 ~~~~td~~d~~-~---------------~~~~~gp~~~l~~~~~~~~~~g~~~~ea~~~~t~npa~~~gl~~~g~i~~g~ 322 (365)
T TIGR03583 259 IFPDTISTDIY-I---------------RNRINGPVYSLATVMSKFLALGYSLEEVIEKVTKNAAEILKLTQKGRLQEGY 322 (365)
T ss_pred CCCcccccccc-c---------------CCCccCccccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCC
Confidence 2 123333321 0 0112222333444444444679999999999999999999995489999999
Q ss_pred CccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050 383 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 432 (450)
Q Consensus 383 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v 432 (450)
.|||+++|.+.... .+.+... +....... -.+..|+.+|++.
T Consensus 323 ~ad~~~~~~~~~~~-----~~~~~~g-~~~~~~~~--~~~~~~~~~~~~~ 364 (365)
T TIGR03583 323 DADLTIFTVKAEPK-----KLTDSEG-DSRIAEEQ--IKPLAVIIGGEYY 364 (365)
T ss_pred cccEEEEecCCCCc-----eeecCCC-CEEEeccc--cceEEEEECCEEe
Confidence 99999999754321 1222211 11111111 1467899999874
No 103
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=99.93 E-value=7.9e-24 Score=188.27 Aligned_cols=333 Identities=23% Similarity=0.300 Sum_probs=219.0
Q ss_pred CcceeEEEeCCEEEEeccCCCCCCCC-------CCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCc
Q 013050 1 MCKRAVEIKEGNIISIVSEEDWPRNS-------KTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGI 73 (450)
Q Consensus 1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~-------~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~Gv 73 (450)
++++||.|+||||++||+...+..+. +.+++|.++|+++..|-||+|+|+-.| .....++.+|+
T Consensus 82 i~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---------qqi~~Al~sGi 152 (568)
T COG0804 82 IVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---------QQIEEALASGI 152 (568)
T ss_pred eEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH---------HHHHHHHhcCc
Confidence 47899999999999999876544322 467888999999999999999998755 35678899999
Q ss_pred eEEEeCCCCC------CCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCC
Q 013050 74 TTLIDMPLNS------DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 147 (450)
Q Consensus 74 T~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 147 (450)
|+.+..+.+. ...+.....+..+++.++. .++++++.+ ..+......+.+.++.|+.++|. ++
T Consensus 153 TtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~-~p~N~g~lg---KGn~s~~~~L~Eqi~aGa~GlKl-------HE 221 (568)
T COG0804 153 TTMIGGGTGPADGTNATTCTPGPWHIARMLQAADG-LPMNIGFLG---KGNASNPAPLAEQIEAGAIGLKL-------HE 221 (568)
T ss_pred EEEecCccCCCCCcccccccCCHHHHHHHHHhhhc-CceeeEEee---cCCCCCchhHHHHHhhccceeEe-------ec
Confidence 9998764111 1123445566667666554 478888865 45555566799999999999999 45
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 227 (450)
Q Consensus 148 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 227 (450)
.|..++..+..++..|.+++.+|.+|.+..+. ...++..+...+
T Consensus 222 DWG~TpaaI~~~L~VAD~~DvqVaiHtDTLNE-----------------------------sGfvEdTi~A~~------- 265 (568)
T COG0804 222 DWGATPAAIDTCLSVADEYDVQVAIHTDTLNE-----------------------------SGFVEDTIAAIK------- 265 (568)
T ss_pred ccCCCHHHHHHHHhhhhhhceEEEEeeccccc-----------------------------ccchHhHHHHhc-------
Confidence 56788999999999999999999999966442 234566666665
Q ss_pred CCCceEEEEecCCh--hHHHHHHHHHHhCCCcEE--EecCcchhcccccccCCCCCceEEcCCCCC------hhhH-HHH
Q 013050 228 AEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSIT--VETCPHYLAFSAEEIPDGDTRFKCAPPIRD------AANK-EKL 296 (450)
Q Consensus 228 ~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~l 296 (450)
+.-+|..|..-+ --..+.++-+...++..+ ....|+..-.-.+.+...-.+.+.+|.+.+ .+-+ +-+
T Consensus 266 --gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR~eTI 343 (568)
T COG0804 266 --GRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESRIRPETI 343 (568)
T ss_pred --CceeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhhhhccchhhh
Confidence 778888887632 134456666544432211 111111111111111112234445554311 1111 111
Q ss_pred ---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh---------------cCCCHHHH
Q 013050 297 ---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---------------YGVTLEQL 358 (450)
Q Consensus 297 ---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~gls~~~a 358 (450)
.-..+.|...+++||+..... +....-..|+.+.+ ..+...+.
T Consensus 344 AAEdiLhDmGafSmisSDSQAMGR-------------------vGEvi~RtwQtA~kmK~qrG~L~~d~~~nDN~RvkRY 404 (568)
T COG0804 344 AAEDILHDMGAFSMISSDSQAMGR-------------------VGEVITRTWQTADKMKKQRGALPEDAGGNDNFRVKRY 404 (568)
T ss_pred hHHHHHhhccceEEeccchHhhhc-------------------cchhhhhHHHHHHHHHHhcCCCCCCCCCCccHHHhhh
Confidence 113345888899999754311 11111122221111 11557788
Q ss_pred HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050 359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434 (450)
Q Consensus 359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 434 (450)
+..+|+|||-.-|+ +.+||+|+||.||||+|++ .++- -++..|+.+|-+.+.
T Consensus 405 iaKyTINPAIthGis~~vGSvEvGK~ADlVLW~P-----------aFFG-------------vKP~~vlkgG~ia~a 457 (568)
T COG0804 405 IAKYTINPAITHGISHEVGSVEVGKLADLVLWDP-----------AFFG-------------VKPELVLKGGMIAWA 457 (568)
T ss_pred hhheecCHHHhcccchhccceeccceeeeeeech-----------hhcC-------------CCcceEEecceeeee
Confidence 99999999999999 8899999999999999993 2222 367889999988765
No 104
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.9e-23 Score=181.46 Aligned_cols=342 Identities=20% Similarity=0.236 Sum_probs=197.7
Q ss_pred cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccc-c----CCCCCCcccc---hHHHHHHHHhCCc
Q 013050 2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH-L----DDPGRTEWEG---FPSGTKAAAAGGI 73 (450)
Q Consensus 2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H-~----~~~~~~~~~~---~~~~~~~~~~~Gv 73 (450)
..|.|.|+||+|..|.+.... ...-+|++|.+++|||||.|+- + ...+.-.|.- +..-.+.++.+||
T Consensus 15 ~~gsv~i~DG~Ia~i~~g~s~-----~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~ahD~~l~~sGI 89 (377)
T COG3454 15 VNGSVLIRDGLIADIDEGISP-----LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILAHDAQLAASGI 89 (377)
T ss_pred eeeeEEEecceEeeeccccCc-----ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHHhhHHHHhcCh
Confidence 468999999999999886542 2567899999999999999993 2 2212223332 3344668899999
Q ss_pred eEEEeCC---CCCCCCCCcHHHHHHHHHHHh-----cCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCC
Q 013050 74 TTLIDMP---LNSDPSTISTETLKLKVDAAE-----KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 145 (450)
Q Consensus 74 T~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 145 (450)
||+++.- ....+... ...+..+.+.+. .....+-.++....-.....++.++++...+...+...+.+...
T Consensus 90 TTv~dal~iGd~~~gg~r-~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~LiSlMDH~PG 168 (377)
T COG3454 90 TTVLDALAIGDVRDGGLR-LENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKLISLMDHTPG 168 (377)
T ss_pred hhHHhhhhcCcccCCccc-hHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeEEEecCCCCC
Confidence 9999862 11122222 223444433332 12223333444444455667888999999887777777755321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccC
Q 013050 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 225 (450)
Q Consensus 146 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 225 (450)
.. ...+.+..++.. .+|+++ +.......+.......-. .. ......+..++...
T Consensus 169 Qr-Qf~~le~Y~~yy--~~k~~~-------s~~e~~~~i~~r~a~~~~-------y~------~~~r~~i~~~c~~r--- 222 (377)
T COG3454 169 QR-QFANLEKYREYY--QGKRGL-------SDEEFAEFIEERQALSAR-------YS------DPNRQAIAALCRER--- 222 (377)
T ss_pred cc-hhhhHHHHHHHH--HhhcCC-------CHHHHHHHHHHHHHHHhh-------cc------cchHHHHHHHHHHc---
Confidence 11 112222222211 122222 111111111100000000 00 11234555555544
Q ss_pred CCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC-ceEEcCCC-CChhhH--HHHHHHHh
Q 013050 226 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT-RFKCAPPI-RDAANK--EKLWEALM 301 (450)
Q Consensus 226 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~l~~~~~ 301 (450)
|+.+. .| .+.+.+-+++....|+.+.. .|-.+........ .+. ..+..|++ +..... -...++..
T Consensus 223 ----gI~lA-SH---DDaT~~hV~es~~~Gv~iAE--FPtT~eAA~asr~-~Gm~VlMGAPNivrGgSHsGNvsA~ela~ 291 (377)
T COG3454 223 ----GIALA-SH---DDATVEHVAESHGLGVAIAE--FPTTVEAAKASRE-LGMQVLMGAPNIVRGGSHSGNVSARELAQ 291 (377)
T ss_pred ----CCcee-cC---CcCcHHHHHHHHhcCeeEEe--CccHHHHHHHHHH-hCchhhcCCCceeccCCcccchhHHHHHh
Confidence 55443 34 22788888998888876665 3333322222111 232 23445554 333333 33356667
Q ss_pred cCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCcccc
Q 013050 302 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAI 380 (450)
Q Consensus 302 ~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~ 380 (450)
.|+.++++||+.|... ++..+.++. ...+|+.+|++|.|.|||+++|+.+.|+|+|
T Consensus 292 ~glLDiLsSDY~P~SL-----------------------l~A~F~La~~~~~~~lpqAvalvt~nPA~algl~DRG~Ia~ 348 (377)
T COG3454 292 HGLLDILSSDYVPASL-----------------------LHAAFRLADLGSNISLPQAVALVTKNPARALGLTDRGRIAP 348 (377)
T ss_pred CCceeeecccCCcHHH-----------------------HHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCCccccccc
Confidence 8999999999987632 233333332 2346899999999999999999977999999
Q ss_pred CCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050 381 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433 (450)
Q Consensus 381 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~ 433 (450)
|++||||.+..+. .. ..|+.||+.||-|+
T Consensus 349 GlrADlv~v~~~~----------------~v--------p~ir~vwr~G~rv~ 377 (377)
T COG3454 349 GLRADLVRVRRDG----------------GV--------PVIRTVWRAGKRVA 377 (377)
T ss_pred ccccceEEEecCC----------------CC--------ceeeeeeecceecC
Confidence 9999999887542 11 26899999999774
No 105
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=176.68 Aligned_cols=299 Identities=20% Similarity=0.237 Sum_probs=186.5
Q ss_pred eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCC
Q 013050 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNS 83 (450)
Q Consensus 4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~ 83 (450)
.+|.|.||||+++++. +.+ ...++||++|.+|.||+||.|+|.+..+-.. -..-.+.....|+||++|.+ +.
T Consensus 24 tniai~ngkIaa~~d~-~ap---a~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~---~v~pd~~ga~~GvTTvVDAG-Sa 95 (386)
T COG3964 24 TNIAIINGKIAAADDY-PAP---AETQIIDADGCIVSPGLIDLHVHVYYGGTEG---GVRPDMYGAPNGVTTVVDAG-SA 95 (386)
T ss_pred ceeeeecCeEEeccCc-CCC---hhheEEccCccEeccCeeeeeeEEecCCCcc---CcCHHHccccCCceEEEecC-Cc
Confidence 5789999999999943 322 3679999999999999999999997654322 12234566789999999997 22
Q ss_pred CCCCCcHHHHHHHHHHHh---cCCceEEEEeccccCCC-c----cchHHHHHHHHc---CCcEEEEecccCCCCCCCCCC
Q 013050 84 DPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPEN-A----YNASALEALLNA---GVLGLKSFMCPSGINDFPMTN 152 (450)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 152 (450)
.......+........ ....++++..+-..... . -....+.+..++ -+.|+|.-+....... ..
T Consensus 96 --Gaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~---~G 170 (386)
T COG3964 96 --GAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGE---YG 170 (386)
T ss_pred --CccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccc---cC
Confidence 2344444444332221 23344444433221111 1 123455555553 3557776543332111 12
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050 153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232 (450)
Q Consensus 153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (450)
-.-+....+.|+..++|+++|..++.. ..+++++.+..- ++-
T Consensus 171 itPl~la~~ia~~~klPlmvHigePp~-------------------------------~~dEvlerL~~G-------DIi 212 (386)
T COG3964 171 ITPLTLALRIANDLKLPLMVHIGEPPV-------------------------------LMDEVLERLRRG-------DII 212 (386)
T ss_pred CchHHHHHHHHhhcCCceEEecCCCCc-------------------------------cHHHHHHhccCC-------cee
Confidence 223556777888999999999966442 125566665532 455
Q ss_pred EEEEecCCh------hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC-e
Q 013050 233 LHIVHLSDA------SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-I 305 (450)
Q Consensus 233 ~~~~h~~~~------~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~ 305 (450)
.||.|.... -.....+++++++|+..-. ....-. .......+++..|. +
T Consensus 213 tHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~--ghG~as----------------------fsf~vAr~aia~GllP 268 (386)
T COG3964 213 THCFNGKPNTILTDDGVVRAEVRRARERGVIFDA--GHGRAS----------------------FSFNVARRAIANGLLP 268 (386)
T ss_pred eeeccCCCCCccccchhHHHHHHHHHhcceEEEc--cCCcce----------------------eeHHHHHHHHhcCCCc
Confidence 555554321 1455677777778753333 221100 11122345566665 4
Q ss_pred eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCcc
Q 013050 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 385 (450)
Q Consensus 306 ~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~AD 385 (450)
+.++||-.... .+.+.-..++-.+..+...|+++.++++++|.|||.+++++..|+|+||.+||
T Consensus 269 ~~ISSDlh~~~----------------~~n~Pv~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~~~gtLa~G~~aD 332 (386)
T COG3964 269 DIISSDLHTIT----------------KLNGPVYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLAEIGTLAPGAFAD 332 (386)
T ss_pred ceeeccceeee----------------ecCchHHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCccccCccCCCcccc
Confidence 78999965432 12223344555566677889999999999999999999998899999999999
Q ss_pred EEEEeCCC
Q 013050 386 LVVWEPEA 393 (450)
Q Consensus 386 lvv~d~~~ 393 (450)
|+||+...
T Consensus 333 ~tvf~lk~ 340 (386)
T COG3964 333 ITVFKLKN 340 (386)
T ss_pred eEEEEecc
Confidence 99999654
No 106
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1.8e-22 Score=181.26 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEEC
Q 013050 352 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISR 428 (450)
Q Consensus 352 gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~ 428 (450)
-||++.+++..|..+|+.+|+.+.|.|.+|.+|||+|+|+....+.. .+... ..|..|+.. ..++..|.|+
T Consensus 473 ~l~Le~av~rmT~~~Ae~~GL~drGlvreG~rADl~viDp~~vr~~a-----~y~~~-~lPa~G~~~~~vn~~~vat~v~ 546 (579)
T COG3653 473 LLSLERAVRRMTGELAEWFGLGDRGLVREGDRADLVVIDPHLVRDVA-----TYTEP-ALPAYGILRVMVNRNVVATGVG 546 (579)
T ss_pred cccHHHHHHHHhccHHHHhCcccccccccccccceEEEccccccccc-----cccCc-cCCCCcceEEEEeccceeeecc
Confidence 39999999999999999999967999999999999999976533322 23344 567777554 3568888999
Q ss_pred CeEEEecCcccC-CCCCccccc
Q 013050 429 GNLVYKEGNHAP-AACGSPILA 449 (450)
Q Consensus 429 G~~v~~~g~~~~-~~~g~~~~~ 449 (450)
|.+.++||++++ ...||++|+
T Consensus 547 Gvvs~rdGe~tg~~~aGR~lR~ 568 (579)
T COG3653 547 GVVSFRDGEFTGQVKAGRYLRA 568 (579)
T ss_pred eeEEEecCcccCcccccchhcc
Confidence 999999999998 588999986
No 107
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=99.86 E-value=1.5e-19 Score=165.92 Aligned_cols=264 Identities=22% Similarity=0.286 Sum_probs=158.8
Q ss_pred eccceeecc-----ccCCCCCCccc---chHHHHHHHHhCCceEEEeCC-CC-CCCCCCcHHHHHHHHHHHh-----cCC
Q 013050 40 MPGLIDVHA-----HLDDPGRTEWE---GFPSGTKAAAAGGITTLIDMP-LN-SDPSTISTETLKLKVDAAE-----KRI 104 (450)
Q Consensus 40 ~PG~iD~H~-----H~~~~~~~~~~---~~~~~~~~~~~~GvT~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-----~~~ 104 (450)
+|||||.|+ |+.--+...|+ .+....+++.++||||+++.- .+ ..+.....+......+.+. +..
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 699999999 33322222332 244556789999999999873 11 2222234555554444442 222
Q ss_pred ceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCC---------------------------------CCCC
Q 013050 105 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND---------------------------------FPMT 151 (450)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------------------~~~~ 151 (450)
.++-..+........+..+.+..+++.+...+.+++.+....+ ....
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 3344444444445566677888888877666666654321110 0012
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050 152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 231 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (450)
..+.++++++.|+++|+++.+|..... +.++...+ . |.
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~-------------------------------~~v~~a~~----~-------Gv 198 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTP-------------------------------EHVAEAHE----L-------GV 198 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCh-------------------------------HHHHHHHH----C-------CC
Confidence 346677777888888888888874321 01112211 1 33
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCC
Q 013050 232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 311 (450)
Q Consensus 232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD 311 (450)
.+. .|. .+.+.++.+++.|..+.... |. ... .+ .......++++++.|+.++++||
T Consensus 199 ~~~-E~p----~t~e~a~~a~~~G~~vv~ga-pn-~lr-------g~----------s~~g~~~~~~ll~~Gv~~al~SD 254 (325)
T cd01306 199 VIS-EFP----TTLEAAKAARELGLQTLMGA-PN-VVR-------GG----------SHSGNVSARELAAHGLLDILSSD 254 (325)
T ss_pred eec-cCC----CCHHHHHHHHHCCCEEEecC-cc-ccc-------Cc----------cccccHhHHHHHHCCCeEEEEcC
Confidence 322 232 34456666666776555421 11 000 00 01122345778889999999999
Q ss_pred CCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeC
Q 013050 312 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 391 (450)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~ 391 (450)
+.|.. .+...+.+....+++++++++++|.|||+++|+++.|+|++|+.||||+++.
T Consensus 255 ~~p~s-----------------------ll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d~G~I~~G~~ADlvvvd~ 311 (325)
T cd01306 255 YVPAS-----------------------LLHAAFRLADLGGWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILVDD 311 (325)
T ss_pred CCcHh-----------------------HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEeC
Confidence 86531 1333445566788999999999999999999996579999999999999996
Q ss_pred C
Q 013050 392 E 392 (450)
Q Consensus 392 ~ 392 (450)
+
T Consensus 312 ~ 312 (325)
T cd01306 312 M 312 (325)
T ss_pred C
Confidence 5
No 108
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=99.85 E-value=1.7e-19 Score=168.25 Aligned_cols=295 Identities=26% Similarity=0.289 Sum_probs=160.3
Q ss_pred ecCCCEEeccceeeccc--cCCC--CCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE
Q 013050 33 DYGEAVIMPGLIDVHAH--LDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 108 (450)
Q Consensus 33 D~~g~~v~PG~iD~H~H--~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (450)
|++|++|+|||||+|+| +... ...+.+......+.++.+|+|++++.+ .. ....+...... ....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~~-----~~~~~~~~~~~-----~~~~ 69 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-GT-----NPEELNRARRR-----GAGY 69 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-SS-----SHHHHHHHHHH-----ESEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-CC-----CchhhHHHHhh-----cccc
Confidence 79999999999999999 2221 222223455677889999999999875 22 22222222211 1111
Q ss_pred EEeccccC-CCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEecCChhhhhhhhhh
Q 013050 109 GFWGGLVP-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKL 186 (450)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~ 186 (450)
........ ......+.+..........+... + .......+.+.++.+.+.+ +.+..|.... ........
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 140 (304)
T PF13147_consen 70 PGSGAGPRGTTIEELEALVDLIAAEGVGFVAA--Y------NGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAE 140 (304)
T ss_dssp EEECESCCHHHHHHHHHHHHHHHHTEEEEESS--S------THHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHhhcCcceeec--c------ccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHh
Confidence 11111111 11112233333333344343321 0 1245567777888888888 4555554332 21111111
Q ss_pred ccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcch
Q 013050 187 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 266 (450)
Q Consensus 187 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 266 (450)
.. ..... . ........+.......... +..+++...... .....+......++...... .
T Consensus 141 ~~-~~~~~-------~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~ 200 (304)
T PF13147_consen 141 GL-DAMEH-------I-LPHEVAEALHLAEALAQGA-------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH---L 200 (304)
T ss_dssp HH-HTTHH-------S-THHHHHHHHHHHHHHHHHH-------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE---H
T ss_pred cc-cchhh-------h-hhhhHHHHHHHHHHhhhcc-------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH---h
Confidence 10 00000 0 1111112222222222222 445555555543 33333444455554444322 0
Q ss_pred hcccccccCCCCCceEEcCCCC--ChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHH
Q 013050 267 LAFSAEEIPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT 344 (450)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 344 (450)
+...... .+..+...|++. .......+.++++.|+.+.++||+.+.... .....+...
T Consensus 201 ~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~ 260 (304)
T PF13147_consen 201 LARDAAA---AGIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEA 260 (304)
T ss_dssp HHHHHHH---HGGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHH
T ss_pred hHHHHHh---cCceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhh
Confidence 0000000 144567788776 777888889999999999999998765321 223345566
Q ss_pred HHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEE
Q 013050 345 WSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV 387 (450)
Q Consensus 345 ~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlv 387 (450)
...+...|+|++++++++|.|||++||+ +++|+|++||+||||
T Consensus 261 ~~~~~~~gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 261 MRLAVRAGLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp HHHHHHTSSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred hhHHhhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 6667779999999999999999999999 889999999999997
No 109
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=99.77 E-value=2.5e-18 Score=162.93 Aligned_cols=43 Identities=35% Similarity=0.461 Sum_probs=37.3
Q ss_pred HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEe
Q 013050 348 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWE 390 (450)
Q Consensus 348 ~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d 390 (450)
+.+.+++++++++|+|.|||++||+ +++|+|++||+|||||||
T Consensus 290 ~~~~~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 290 FVRLGISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHHHHSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred cccccccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 3344499999999999999999999 889999999999999997
No 110
>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=3.8e-16 Score=132.53 Aligned_cols=69 Identities=29% Similarity=0.367 Sum_probs=59.4
Q ss_pred HHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce
Q 013050 340 VLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 417 (450)
Q Consensus 340 ~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (450)
.+..+.++ .+.-|.|.+-|+++||..||++||+ +++|++..|..||||++|.+
T Consensus 335 pMd~CvRhf~kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~------------------------- 389 (407)
T KOG3892|consen 335 PMDVCVRHFLKATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDS------------------------- 389 (407)
T ss_pred CcHHHHHHHHHhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccc-------------------------
Confidence 34555555 4566999999999999999999999 88999999999999999944
Q ss_pred EeeEEEEEEECCeEEEec
Q 013050 418 LSGKVLATISRGNLVYKE 435 (450)
Q Consensus 418 ~~~~v~~v~v~G~~v~~~ 435 (450)
-.|..||+.|+.||+-
T Consensus 390 --l~V~aT~isG~~V~~a 405 (407)
T KOG3892|consen 390 --LHVQATYISGELVWQA 405 (407)
T ss_pred --eEEEEEEEccEEEEec
Confidence 2789999999999974
No 111
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=99.70 E-value=2.5e-16 Score=153.13 Aligned_cols=243 Identities=21% Similarity=0.189 Sum_probs=130.1
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCceEEEEec------cccCCCccchHHHHHHH---H-cCC
Q 013050 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWG------GLVPENAYNASALEALL---N-AGV 133 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~-~g~ 133 (450)
...+.+.|+|++.++. .......+.+..+.+... ....+++..+. .+.+........+.+.. + .|.
T Consensus 136 ~~~~~a~GiTt~~d~~---~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~ 212 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG---GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA 212 (404)
T ss_dssp HHHHCHTCEEEETTCE---CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCeEEecCCc---cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence 3356678999999885 112233444444444333 23344544332 12233332222332222 2 222
Q ss_pred cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHH
Q 013050 134 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 213 (450)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 213 (450)
.... .+.+..+.+.+.++++.|.+.|+++.+|+... ..+.
T Consensus 213 -~~~~-------~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd--------------------------------~a~~ 252 (404)
T PF07969_consen 213 -PVHI-------SGLPSFDPEELEELVRAAREAGLQVAVHAIGD--------------------------------RAID 252 (404)
T ss_dssp -EEEE-------TC--SSSHHHHHHHHHHHHHCT-EEEEEEESH--------------------------------HHHH
T ss_pred -cccc-------cccccccchhHHHHHHHHHhcCCeeEEEEcCC--------------------------------chHH
Confidence 2221 33456778889999999999999999999332 2355
Q ss_pred HHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC--CChh
Q 013050 214 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI--RDAA 291 (450)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 291 (450)
.+++..+.. .....+.|+.. ...+.++.+++.++. .+..+.++....... ..+.+ ....
T Consensus 253 ~~l~a~~~~-------~~~~~i~h~~~--~~~~~~~~~~~l~~~--~~~~p~~~~~~~~~~--------~~~~~~~~~~~ 313 (404)
T PF07969_consen 253 EALDAIEAA-------RARGRIEHAEL--IDPDDIERMAELGVT--ASVQPHFLFSWGGEW--------YEERLGPERAR 313 (404)
T ss_dssp HHHHHHHHH-------TCCHEEEEHCB--CCHHHHHHHHHHTTE--EEECCTHHHHETEET--------HHHHHHHHCGG
T ss_pred hHHHHHHhh-------cccceeecccc--CCHHHHHHHHHhCCc--cccChhHhhhccchh--------hhhhhhhHHHH
Confidence 566666554 22225667764 344455555555544 444554333221000 00000 0011
Q ss_pred hHHHHHHHHhcCCeeEEcCCCCC--CChhhhcccCCCccccCCCCcchhhHHHHHHHH-HH---------hcCCCHHHHH
Q 013050 292 NKEKLWEALMDGHIDMLSSDHSP--TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GR---------KYGVTLEQLA 359 (450)
Q Consensus 292 ~~~~l~~~~~~g~~~~~gtD~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~---------~~gls~~~al 359 (450)
....+...++.|+.++++||+.. .++...+ ....... .. +..+|++|++
T Consensus 314 ~~~~~~~~~~~Gv~v~~gsD~p~~~~~P~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ls~~eAl 374 (404)
T PF07969_consen 314 RIYPIRSLLDAGVRVALGSDAPVSPPNPFRGI-------------------WAAVTRQMAGERSGPVLGPEQRLSLEEAL 374 (404)
T ss_dssp GBTHHHHHHHCTTEEEE--TTTTSSCCHHHHH-------------------HHHHHHHHCHHTHHHCCGGTGSSHHHHHH
T ss_pred HHhHHHHHHhccCceecCcCCcccccCcchhh-------------------hhhhccccccccccccccccccCCHHHHH
Confidence 12446778899999999999642 2222110 0111111 11 2679999999
Q ss_pred HHHhhchhHHhCC-CCCCccccCCCccEEE
Q 013050 360 SWWSERPAKLAGQ-VSKGAIAIGNHADLVV 388 (450)
Q Consensus 360 ~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv 388 (450)
+++|.|||+.+|+ +.+|+|+|||.|||||
T Consensus 375 ~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 375 RAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred HHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 9999999999999 6669999999999997
No 112
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=99.65 E-value=1.8e-14 Score=129.26 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=64.7
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeE
Q 013050 353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 431 (450)
Q Consensus 353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~ 431 (450)
+++.|+..+.-.+||+.||+ +..|.|.+|.+||+.|+|.+|..--++. + +.-.+ .. -+.-..|+.+|+|
T Consensus 438 ~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~-d-------ye~v~-ka-f~~A~ytlK~GeI 507 (575)
T COG1229 438 LTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSN-D-------YEKVE-KA-FRKAAYTLKGGEI 507 (575)
T ss_pred ccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCcc-c-------HHHHH-HH-HhheeEEecCceE
Confidence 78999999999999999999 7799999999999999998873221111 1 11000 00 1356789999999
Q ss_pred EEecCcccCCCCCcc
Q 013050 432 VYKEGNHAPAACGSP 446 (450)
Q Consensus 432 v~~~g~~~~~~~g~~ 446 (450)
|+++|+++.+..||-
T Consensus 508 vvkdGeiv~~p~grT 522 (575)
T COG1229 508 VVKDGEIVAEPEGRT 522 (575)
T ss_pred EEecceEEecccCce
Confidence 999999998887873
No 113
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=99.62 E-value=1.9e-15 Score=106.22 Aligned_cols=68 Identities=35% Similarity=0.658 Sum_probs=48.7
Q ss_pred EEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEE
Q 013050 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 76 (450)
Q Consensus 6 V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~ 76 (450)
|+|+||||++|++....+. +..+++|++|++|+|||||+|+|+..+.... .........++++||||+
T Consensus 1 V~I~~g~I~~v~~~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPA--DAAEVIDAKGKYVMPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTS--TCCEEEEETTCEEEE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCC--CCCEEEECCCCEEeCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence 7899999999965544332 4667899999999999999999987332111 112455667789999996
No 114
>PRK06886 hypothetical protein; Validated
Probab=99.57 E-value=2.3e-12 Score=119.08 Aligned_cols=245 Identities=12% Similarity=0.017 Sum_probs=133.9
Q ss_pred HHHHHhCCceEEEeCCCCCCC--CCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEeccc
Q 013050 65 TKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 142 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 142 (450)
.+.++++|+|.++.+. ...+ ....++.+....+.......+.+..++..--..+...+.+.+..+. +.-+... .+
T Consensus 75 l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~~~~~~~l~~~al~~-advvGGi-P~ 151 (329)
T PRK06886 75 IELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVIEPTAKKWFDIGSEM-VDMIGGL-PY 151 (329)
T ss_pred HHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhccCccHHHHHHHHHHh-CCEEeCc-cC
Confidence 4477889999999996 4444 4566777777777776665665543321111112223344444333 3222222 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhh
Q 013050 143 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 222 (450)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 222 (450)
.. ......+.+.+..++++|+++|++|.+|+.+... +. ...++.+.+...+.
T Consensus 152 ~~-~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~------------------------~~---~~~le~l~~~~~~~ 203 (329)
T PRK06886 152 RD-ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNT------------------------PK---EKETEQLCDKTIEH 203 (329)
T ss_pred Cc-CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCc------------------------hh---HHHHHHHHHHHHHc
Confidence 10 0112356788999999999999999999965322 11 11233333333322
Q ss_pred ccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhc-ccccccCCCCCceEEcCCCCChhhHHHH
Q 013050 223 RTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLA-FSAEEIPDGDTRFKCAPPIRDAANKEKL 296 (450)
Q Consensus 223 ~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 296 (450)
+. ..++.+.|+... ....+.++.+++.|+.+.. +|.... +.... ... |++ .....+
T Consensus 204 ---Gl--~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~--~P~snl~l~~~~--------~~~-p~~--rGv~pv 265 (329)
T PRK06886 204 ---GM--QGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIA--CPMAWIDSNRKE--------DLM-PFH--NALTPA 265 (329)
T ss_pred ---CC--CCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEE--Cchhhhhhcccc--------ccC-cCC--CCCCCH
Confidence 22 336888888643 1344567778888877766 554321 11100 000 111 112235
Q ss_pred HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 297 ~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
.++++.|+.+++|||+.. +++. |.|....-..+..... .. .-.++.++++|+|.|||++||+
T Consensus 266 ~eL~~aGV~V~lGtDnv~-D~~~-----------p~g~~Dmle~~~l~~~-~~-~~~~~~~~l~maT~~gAraLgl 327 (329)
T PRK06886 266 DEMIPEGITVALGTDNIC-DYMV-----------PLCEGDMWQELSLLAA-GC-RFYDLDEMVNIASINGRKVLGL 327 (329)
T ss_pred HHHHHCCCeEEEecCCCc-ccCC-----------CCCCCCHHHHHHHHHH-Hc-CCCCHHHHHHHHhhhHHHHhCC
Confidence 677889999999999742 1111 1121211111121111 11 1247899999999999999997
No 115
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.55 E-value=3.7e-13 Score=123.58 Aligned_cols=246 Identities=24% Similarity=0.288 Sum_probs=139.3
Q ss_pred ceeeccccCCCCCCc------------------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 013050 43 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 104 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~------------------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (450)
|||+|+|+..+.... ..........++.+|||++++++ ...+............+.+....
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA 79 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence 799999986543221 12244567788999999999986 33332222233333333333321
Q ss_pred ceEEEEeccccCCCc--------cchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050 105 YVDVGFWGGLVPENA--------YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 176 (450)
Q Consensus 105 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 176 (450)
.++............ ...+.+.++.+.|+.+++.+..... ...+.+.++++++.|+++|+++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~ 155 (275)
T cd01292 80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE 155 (275)
T ss_pred CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence 334433322222211 1123333333347888887543321 0147899999999999999999999954
Q ss_pred hhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCC
Q 013050 177 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 256 (450)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~ 256 (450)
.... ...+..+++.... +.++.+.|+... ..+.++.+++.|+
T Consensus 156 ~~~~----------------------------~~~~~~~~~~~~~--------~~~~~~~H~~~~--~~~~~~~~~~~g~ 197 (275)
T cd01292 156 LPDP----------------------------TRALEDLVALLRL--------GGRVVIGHVSHL--DPELLELLKEAGV 197 (275)
T ss_pred cccC----------------------------ccCHHHHHHHHhc--------CCCEEEECCccC--CHHHHHHHHHcCC
Confidence 3310 0013444444431 456888898862 3345566666664
Q ss_pred cEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcc
Q 013050 257 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 336 (450)
Q Consensus 257 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (450)
.+++||....... ........+.++++.|..++++||+.+......
T Consensus 198 --~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~---------------- 243 (275)
T cd01292 198 --SLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTD---------------- 243 (275)
T ss_pred --eEEECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCC----------------
Confidence 4444775443221 011223345677888999999999754421000
Q ss_pred hhhHHHHHHHH---HHhcCCCHHHHHHHHhhchhHH
Q 013050 337 LQFVLPVTWSY---GRKYGVTLEQLASWWSERPAKL 369 (450)
Q Consensus 337 ~~~~~~~~~~~---~~~~gls~~~al~~aT~~~A~~ 369 (450)
+...++. ....++|.+++++++|.|||++
T Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 244 ----LLALLRLLLKVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred ----HHHHHHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence 1111121 2233489999999999999973
No 116
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.54 E-value=4.3e-13 Score=122.15 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 013050 156 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 235 (450)
Q Consensus 156 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (450)
++++++.|+++|+++.+|+.+... .. + ...++.+.++ ++ ....|+
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~----------~~----------g------~~~i~~~~~~-------~~--~~i~H~ 171 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRE----------SV----------G------MTDIERALDL-------EP--DLLVHG 171 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCC----------CC----------C------chhHHHHHhC-------CC--CEEEEc
Confidence 999999999999999999954321 00 0 0113333332 11 333444
Q ss_pred EecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050 236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315 (450)
Q Consensus 236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~ 315 (450)
.|++. +.++.+++.|+.+.. ||...... + .....+.++++.|+.+++|||....
T Consensus 172 ~~l~~-----~~~~~la~~g~~v~~--~P~sn~~l-------~------------~g~~p~~~l~~~Gv~v~lGtD~~~~ 225 (263)
T cd01305 172 THLTD-----EDLELVRENGVPVVL--CPRSNLYF-------G------------VGIPPVAELLKLGIKVLLGTDNVMV 225 (263)
T ss_pred CCCCH-----HHHHHHHHcCCcEEE--ChhhHHHh-------C------------CCCCCHHHHHHCCCcEEEECCCCcc
Confidence 44332 357777778876665 66432110 0 0011245778899999999996443
Q ss_pred ChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHH
Q 013050 316 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKL 369 (450)
Q Consensus 316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~ 369 (450)
+... .... +........ ...++++++++++|.|||++
T Consensus 226 ~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 226 NEPD----------------MWAE-MEFLAKYSRLQGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred CCCC----------------HHHH-HHHHHHHhcccccCCHHHHHHHHhhccccC
Confidence 2111 0111 111110000 11469999999999999973
No 117
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.53 E-value=1.3e-11 Score=107.28 Aligned_cols=293 Identities=20% Similarity=0.264 Sum_probs=194.7
Q ss_pred EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE--EEEecccc
Q 013050 38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD--VGFWGGLV 115 (450)
Q Consensus 38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 115 (450)
+-+....|.|.|+.+.. +....-...+-++...+.|| +..|..........+.+++....+.. +-..-...
T Consensus 5 l~i~rPdDwHlHLRdg~------mL~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlY 77 (344)
T COG0418 5 LTIRRPDDWHLHLRDGA------MLKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLY 77 (344)
T ss_pred eeccCccceeEEecCcc------HHHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEE
Confidence 34677889999998764 33333333445888889999 77777766666666666554322211 11111111
Q ss_pred CCCccchHHHHHHHHcC-CcEEEEecccCCC-CCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050 116 PENAYNASALEALLNAG-VLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 193 (450)
Q Consensus 116 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 193 (450)
-.+....+++.+..++| +.++|.|...... +.....+-+.+...++..++.|+++.+|-+.... +.|.
T Consensus 78 Ltd~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~----------~vDi 147 (344)
T COG0418 78 LTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDA----------EVDI 147 (344)
T ss_pred ecCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCc----------cccc
Confidence 22334467788888887 7889998532111 1112345788889999999999999999976543 2221
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050 194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 273 (450)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 273 (450)
. ..|...++.+++-..+. ++..++.+.|+++. +..+.++... ..+...+++|++.++.++
T Consensus 148 f-----------drE~~Fi~~vl~pl~~~-----fP~LKIV~EHiTT~-dav~~v~~~~---~nlaATIT~hHL~~nrnd 207 (344)
T COG0418 148 F-----------DREAAFIESVLEPLRQR-----FPKLKIVLEHITTK-DAVEYVKDAN---NNLAATITPHHLLLNRND 207 (344)
T ss_pred h-----------hhHHHHHHHHHHHHHhh-----CCcceEEEEEeccH-HHHHHHHhcC---cceeeEeehhheeeehhh
Confidence 1 13445677777777665 77999999999998 8888888763 347778899999999988
Q ss_pred cCCCC--CceEEcCCCCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh
Q 013050 274 IPDGD--TRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 350 (450)
Q Consensus 274 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 350 (450)
+.-.+ ..+-+.|-++...++.++.++.-.| ..+.+|||+.|+....+.-. +...|+......++.+.+...+
T Consensus 208 ~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~-----cgcAG~fsap~al~~~AevFE~ 282 (344)
T COG0418 208 MLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESA-----CGCAGIFSAPFALPLYAEVFEE 282 (344)
T ss_pred hhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccccc-----cccccccccHhHHHHHHHHHHH
Confidence 76555 4566777778888999987766654 56899999999977766432 1112444444445555444444
Q ss_pred cCCCHHHHHHHHhhchhHHhCCC
Q 013050 351 YGVTLEQLASWWSERPAKLAGQV 373 (450)
Q Consensus 351 ~gls~~~al~~aT~~~A~~lg~~ 373 (450)
. -.++..=..++.||.+++|++
T Consensus 283 ~-naL~~LeaF~S~nGp~fY~lp 304 (344)
T COG0418 283 E-NALDNLEAFASDNGPKFYGLP 304 (344)
T ss_pred h-cHHHHHHHHHhhcCcceeccc
Confidence 3 355666677899999999993
No 118
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=99.28 E-value=6.1e-10 Score=93.50 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=182.4
Q ss_pred EeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CceEEEEeccccCC
Q 013050 39 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPE 117 (450)
Q Consensus 39 v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 117 (450)
-+|+.-|+|+|+.+..+. ..........|+.....|| +..|..........+.+.+... +...+-.. +.-.
T Consensus 6 ~i~~~~DmHvHlR~g~ml-----~aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~kL~skttfLMs--lYLs 77 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGDML-----HAVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMKLPSKTTFLMS--LYLS 77 (344)
T ss_pred ecCCccceeEEeccCCee-----eeeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHhcCccceeEEE--Eeec
Confidence 478999999999876432 2233455678899999999 8888777766665555555431 11222221 1222
Q ss_pred CccchHHHHHHHHc-CCcEEEEecccCC---CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050 118 NAYNASALEALLNA-GVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 193 (450)
Q Consensus 118 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 193 (450)
.....+.+++..++ ++.+++.|..-.. .++.. .....+.-.+++.++.|+++.+|-+-+..+. ++
T Consensus 78 ~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~-~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D----------~~ 146 (344)
T KOG2902|consen 78 DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVT-DLFGKFYPVFEAMQEQNMPLNVHGEVPPSID----------GH 146 (344)
T ss_pred CCCCHHHHHHHHHhCceeeEEeccCccccccccccc-ccchhhhHHHHHHHHcCceEEecCCCCCccC----------Cc
Confidence 33446678888886 5678888752211 11211 1356677889999999999999986554311 11
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050 194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 273 (450)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 273 (450)
--..|...+..++.+.++ ++..++.+.||.+. +.++.++.++.- .+...+.+++++++..+
T Consensus 147 ----------Vf~aE~~Flptll~Lhqr------fP~LKivlEHcTt~-dAv~~ve~a~~~--sVaaTvTahHL~Lt~~d 207 (344)
T KOG2902|consen 147 ----------VFDAEKIFLPTLLQLHQR------FPQLKIVLEHCTTM-DAVNFVESAKEG--SVAATVTAHHLLLTRND 207 (344)
T ss_pred ----------eecchhhhHHHHHHHHHh------CccceeHHHhcccH-HHHHHHHhhcCC--ceeeEeehheeEEehhh
Confidence 001234456777776665 66889999999998 888888886543 45666699999999887
Q ss_pred cCCCCCceEEcCCCCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcC
Q 013050 274 IPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 352 (450)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 352 (450)
+.. +...-+.|-.+...+++++.++.-.| ..+.+|||+.|+....+.... .-.|++.....++.+.+...+.|
T Consensus 208 wqg-~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~~~-----~cAGvysqpfA~sy~A~VFde~g 281 (344)
T KOG2902|consen 208 WQG-QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKESSC-----GCAGVYSQPFALSYYAKVFDEAG 281 (344)
T ss_pred hcC-CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccccCC-----CcceeecccchHHHHHHHHhhhc
Confidence 433 33334455556778888887666554 568999999999877764321 11244444444444444444443
Q ss_pred CCHHHHHHHHhhchhHHhCC
Q 013050 353 VTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 353 ls~~~al~~aT~~~A~~lg~ 372 (450)
.++.+-..++.+|-.++++
T Consensus 282 -aLd~Lk~F~s~fG~~FY~~ 300 (344)
T KOG2902|consen 282 -ALDKLKAFTSFFGPDFYGL 300 (344)
T ss_pred -hHHHHhhhHhhcCcceecc
Confidence 3344444566778888888
No 119
>PRK10812 putative DNAse; Provisional
Probab=99.06 E-value=7.7e-08 Score=86.86 Aligned_cols=246 Identities=16% Similarity=0.165 Sum_probs=133.7
Q ss_pred ceeeccccCCCCCC-cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEeccccCCCc
Q 013050 43 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPENA 119 (450)
Q Consensus 43 ~iD~H~H~~~~~~~-~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 119 (450)
+||+|+|+..+.+. ..++......++...||..++..+ ...+......+.+.. .....++.|+..... .
T Consensus 3 ~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~ 74 (265)
T PRK10812 3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVFSCGVHPLNQDE-P 74 (265)
T ss_pred eEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCC-h
Confidence 79999999753221 123567778888999999888775 223333333333332 233345555433322 2
Q ss_pred cchHHHHHHHHc-CCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050 120 YNASALEALLNA-GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 197 (450)
Q Consensus 120 ~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+.+.++++. .+.++.. ..++...........+.+++.+++|+++++||.+|.++..
T Consensus 75 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~------------------- 135 (265)
T PRK10812 75 YDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR------------------- 135 (265)
T ss_pred hHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-------------------
Confidence 335556655543 3444422 2222100011123456688899999999999999996532
Q ss_pred cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050 198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 277 (450)
Q Consensus 198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 277 (450)
+.++++.++.... ..+. +.|+.+ .+.+.++++.+.|..++......
T Consensus 136 ---------------~~~l~iL~~~~~~----~~~~-v~H~fs--G~~~~a~~~~~~G~~is~~g~~t------------ 181 (265)
T PRK10812 136 ---------------ADTLAILREEKVT----DCGG-VLHCFT--EDRETAGKLLDLGFYISFSGIVT------------ 181 (265)
T ss_pred ---------------HHHHHHHHhhcCC----CCCE-EEEeec--CCHHHHHHHHHCCCEEEECeeee------------
Confidence 3444555432110 1122 357765 66777888877776555421110
Q ss_pred CCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCC
Q 013050 278 DTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVT 354 (450)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls 354 (450)
. .....+.+.++... .+.+.||+ |+....... |-..-...+....+.+ .-.|++
T Consensus 182 ---------~---~~~~~~~~~~~~ipldrlLlETD~-P~~~p~~~~----------g~~n~P~~i~~v~~~ia~l~g~~ 238 (265)
T PRK10812 182 ---------F---RNAEQLRDAARYVPLDRLLVETDS-PYLAPVPHR----------GKENQPAMVRDVAEYMAVLKGVS 238 (265)
T ss_pred ---------c---CccHHHHHHHHhCChhhEEEecCC-CCCCCcCCC----------CCCCCcHHHHHHHHHHHHHhCCC
Confidence 0 01122333333332 46799995 443221110 1111122234333333 346899
Q ss_pred HHHHHHHHhhchhHHhCC
Q 013050 355 LEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 355 ~~~al~~aT~~~A~~lg~ 372 (450)
.+++.+..+.|+.+++++
T Consensus 239 ~eei~~~~~~N~~~lf~~ 256 (265)
T PRK10812 239 VEELAQVTTDNFARLFHI 256 (265)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999999999998
No 120
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.05 E-value=4.8e-08 Score=88.49 Aligned_cols=241 Identities=19% Similarity=0.161 Sum_probs=124.2
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 119 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 119 (450)
|+|+|+|+...... .+.....+.+..+|+++++.++ .. ........+.+... .++....++.+...
T Consensus 1 ~~D~H~H~~~~~~~--~~~~~~l~~~~~~gv~~~v~~~-~~------~~~~~~~~~la~~~--~~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQFD--ADRDDVLARAREAGVIKIIVVG-TD------LKSSKRALELAKKY--DNVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhhc--cCHHHHHHHHHHcCCCEEEEeC-CC------HHHHHHHHHHHHhC--CCeEEEEeeCcchhhcC
Confidence 68999999765421 2356667788899999999885 11 11222222222222 12222222223221
Q ss_pred --cchHHHHHHHH-cCCcEEE-EecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 120 --YNASALEALLN-AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 120 --~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
...+.+.+.++ .++.++. ....+...........+.++..++.|++++++|.+|+...
T Consensus 70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~------------------ 131 (251)
T cd01310 70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA------------------ 131 (251)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc------------------
Confidence 12455555554 3444552 2222111000001334678889999999999999999432
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 275 (450)
...+++++++.. ....+. .|... ...+.++++.+.|+.+.. ++....
T Consensus 132 ----------------~~~~~~l~~~~~-----~~~~~i-~H~~~--~~~~~~~~~~~~g~~~~~--~~~~~~------- 178 (251)
T cd01310 132 ----------------HEDVLEILKEYG-----PPKRGV-FHCFS--GSAEEAKELLDLGFYISI--SGIVTF------- 178 (251)
T ss_pred ----------------hHHHHHHHHhcC-----CCCCEE-EEccC--CCHHHHHHHHHcCCEEEe--eeeecc-------
Confidence 134566666531 123344 45443 233566666666654443 322100
Q ss_pred CCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcC
Q 013050 276 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG 352 (450)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~g 352 (450)
.... .+.+..+... .++++||+ |...... ..++ .+....+...+..+. ..|
T Consensus 179 ------------~~~~---~~~~~~~~~~~dril~~TD~-p~~~~~~---------~~~~-~~~~~~~~~~~~~la~~~g 232 (251)
T cd01310 179 ------------KNAN---ELREVVKEIPLERLLLETDS-PYLAPVP---------FRGK-RNEPAYVKHVAEKIAELKG 232 (251)
T ss_pred ------------CCCH---HHHHHHHhCChHHEEEcccC-CCCCCCC---------CCCC-CCCChhHHHHHHHHHHHHC
Confidence 0111 1122222222 46899995 3321111 0011 122233444444444 589
Q ss_pred CCHHHHHHHHhhchhHHhC
Q 013050 353 VTLEQLASWWSERPAKLAG 371 (450)
Q Consensus 353 ls~~~al~~aT~~~A~~lg 371 (450)
++.+++.++.+.|++++||
T Consensus 233 l~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 233 ISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred cCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999986
No 121
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=99.02 E-value=1.2e-07 Score=84.01 Aligned_cols=245 Identities=18% Similarity=0.188 Sum_probs=138.3
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEecccc-CCCc
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLV-PENA 119 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~ 119 (450)
|||+|+|+....+ .++.......+...|++.++..+ ..........+.++. .....++.++... ....
T Consensus 3 liDtH~HL~~~~~--~~d~~~vi~~a~~~gv~~~~~~g-------~~~~~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~ 73 (256)
T COG0084 3 LIDTHCHLDFEEF--DEDRDEVIARAREAGVKKMVVVG-------TDLEDFKRALELAEKYPNVYAAVGVHPLDADEHSE 73 (256)
T ss_pred cEEeeeCCCchhh--cCCHHHHHHHHHHcCCcEEEEee-------cCHHHHHHHHHHHHhCCCeEEEEeeCCCccccccH
Confidence 7999999986332 24567778888999999999886 222333333333332 3334445544330 1113
Q ss_pred cchHHHHHHHHc--CCcEEEEe-cccCCCCC-CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 120 YNASALEALLNA--GVLGLKSF-MCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 120 ~~~~~~~~~~~~--g~~~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
...+.+.+++.. .+..+... .+|.-... ......+.+++-+++|+++++||.+|.++..
T Consensus 74 ~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~----------------- 136 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH----------------- 136 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH-----------------
Confidence 445667777753 44444331 11110000 0011346688899999999999999997643
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC-ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG-AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 274 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 274 (450)
+.+++.+++. + ..--+.|+.+ .+.+..+++...|..++.....- +
T Consensus 137 -----------------~d~~~iL~~~-------~~~~~gi~HcFs--Gs~e~a~~~~d~G~yisisG~it---f----- 182 (256)
T COG0084 137 -----------------EDTLEILKEE-------GAPVGGVLHCFS--GSAEEARKLLDLGFYISISGIVT---F----- 182 (256)
T ss_pred -----------------HHHHHHHHhc-------CCCCCEEEEccC--CCHHHHHHHHHcCeEEEECceee---c-----
Confidence 5666676654 2 1233578887 78888888888886555422111 0
Q ss_pred CCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCC
Q 013050 275 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 353 (450)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gl 353 (450)
+.......+.+.+... .+.+.|| +|.....+.. |--.-...+......+ .-.|+
T Consensus 183 -------------k~a~~~~ev~~~iPld-rLL~ETD-sPyl~P~p~r----------GkrNeP~~v~~v~~~iAelk~~ 237 (256)
T COG0084 183 -------------KNAEKLREVARELPLD-RLLLETD-APYLAPVPYR----------GKRNEPAYVRHVAEKLAELKGI 237 (256)
T ss_pred -------------CCcHHHHHHHHhCCHh-HeEeccC-CCCCCCcCCC----------CCCCCchHHHHHHHHHHHHhCC
Confidence 0111122222222211 2458999 5554433221 1111122233333333 34589
Q ss_pred CHHHHHHHHhhchhHHhCC
Q 013050 354 TLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 354 s~~~al~~aT~~~A~~lg~ 372 (450)
+++++.+..|.|.-+++++
T Consensus 238 ~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 238 SAEEVAEITTENAKRLFGL 256 (256)
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988874
No 122
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.97 E-value=1.5e-07 Score=85.36 Aligned_cols=242 Identities=19% Similarity=0.248 Sum_probs=120.9
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 119 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 119 (450)
|||+|+|+...... .+.....+.+..+|+++++... . . ........+..+.. + ++....++.+...
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~-~-~-----~~~~~~~~~~~~~~-~-~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVG-T-D-----LEDFLRALELAEKY-P-NVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEec-C-C-----HHHHHHHHHHHHHC-C-CEEEEEEeCcchhhcC
Confidence 69999998754321 1466777888899999999774 1 1 12223333323222 2 3333332333221
Q ss_pred --cchHHHHHHHH-cCCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 120 --YNASALEALLN-AGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 120 --~~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
...+++.+.++ .++.++... +.+...........+.+.+.++.|+++|++|.+|+....
T Consensus 70 ~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~----------------- 132 (252)
T TIGR00010 70 TKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE----------------- 132 (252)
T ss_pred CHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc-----------------
Confidence 22344444433 234444332 211100000001237788889999999999999995321
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 275 (450)
..+++++++.. + ...+ +.|... .+.+.+.++.+.|+.+.. +....
T Consensus 133 -----------------~~~~~~l~~~~---~--~~~~-i~H~~~--~~~~~~~~~~~~g~~~~~--~~~~~-------- 177 (252)
T TIGR00010 133 -----------------EDVLDILREEK---P--KVGG-VLHCFT--GDAELAKKLLDLGFYISI--SGIVT-------- 177 (252)
T ss_pred -----------------HHHHHHHHhcC---C--CCCE-EEEccC--CCHHHHHHHHHCCCeEee--ceeEe--------
Confidence 23445554320 1 2222 345553 455677777666654443 22100
Q ss_pred CCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcC
Q 013050 276 DGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYG 352 (450)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~g 352 (450)
.... ..+.+.++.. -.++++||.. ...... + .++.... ..+..... .....|
T Consensus 178 -----------~~~~---~~~~~~i~~~~~dril~~TD~p-~~~~~~------~---~~~~~~p-~~i~~~~~~~a~~~g 232 (252)
T TIGR00010 178 -----------FKNA---KSLREVVRKIPLERLLVETDSP-YLAPVP------Y---RGKRNEP-AFVRYTVEAIAEIKG 232 (252)
T ss_pred -----------cCCc---HHHHHHHHhCCHHHeEecccCC-CCCCCC------C---CCCCCCC-hhHHHHHHHHHHHhC
Confidence 0011 1122222222 2467999963 211000 0 0011111 12332222 233459
Q ss_pred CCHHHHHHHHhhchhHHhCC
Q 013050 353 VTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 353 ls~~~al~~aT~~~A~~lg~ 372 (450)
+|++++.++.+.|++++|++
T Consensus 233 ~~~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 233 MDVEELAQITTKNAKRLFGL 252 (252)
T ss_pred cCHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999975
No 123
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=98.91 E-value=3.9e-07 Score=81.99 Aligned_cols=249 Identities=18% Similarity=0.194 Sum_probs=131.4
Q ss_pred eccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEeccccCC
Q 013050 40 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPE 117 (450)
Q Consensus 40 ~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 117 (450)
.+.+||+|+|+....+. ++......++...||+.++..+ .+........+.... .....++.++.....
T Consensus 2 ~~~~iD~HcHl~~~~~~--~~~~~~l~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~ 72 (258)
T PRK11449 2 ICRFIDTHCHFDFPPFS--GDEEASLQRAAQAGVGKIIVPA-------TEAENFARVLALAERYQPLYAALGLHPGMLEK 72 (258)
T ss_pred CceEEEeccCCCChhhc--cCHHHHHHHHHHCCCCEEEEee-------CCHHHHHHHHHHHHhCCCEEEEEeeCcCcccc
Confidence 45689999999754322 3456667778889999998775 223333333333332 233344555433322
Q ss_pred -CccchHHHHHHHHc---CCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCC
Q 013050 118 -NAYNASALEALLNA---GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 192 (450)
Q Consensus 118 -~~~~~~~~~~~~~~---g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 192 (450)
.....+.+.++++. .+.++... .++...........+.+.+.+++|+++++||.+|+++..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~-------------- 138 (258)
T PRK11449 73 HSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH-------------- 138 (258)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--------------
Confidence 22334555555431 23333221 111100000012446788899999999999999996533
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050 193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 272 (450)
Q Consensus 193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 272 (450)
+.++++.++... ..+. +.|+.+ .+.+.++++.+.|..++. +....
T Consensus 139 --------------------~~~~~il~~~~~-----~~~~-i~H~fs--G~~~~a~~~l~~G~~iS~--~g~it----- 183 (258)
T PRK11449 139 --------------------DKLAMHLKRHDL-----PRTG-VVHGFS--GSLQQAERFVQLGYKIGV--GGTIT----- 183 (258)
T ss_pred --------------------HHHHHHHHhcCC-----CCCe-EEEcCC--CCHHHHHHHHHCCCEEEe--Ccccc-----
Confidence 345555554310 1112 577777 567788888777765444 22100
Q ss_pred ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhc
Q 013050 273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKY 351 (450)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 351 (450)
+ ........+.+.+... .+.+.||+ |...... + .|-..-...+...+.. +.-.
T Consensus 184 --------~------~~~~~~~~~~~~ipld-riL~ETD~-P~l~p~~------~----~~~~n~p~~~~~~~~~ia~l~ 237 (258)
T PRK11449 184 --------Y------PRASKTRDVIAKLPLA-SLLLETDA-PDMPLNG------F----QGQPNRPEQAARVFDVLCELR 237 (258)
T ss_pred --------c------cCcHHHHHHHHhCChh-hEEEecCC-CCCCCCC------C----CCCCCCChHHHHHHHHHHHHH
Confidence 0 0111111222222111 25799994 4422111 0 0111112233444433 4446
Q ss_pred CCCHHHHHHHHhhchhHHhCC
Q 013050 352 GVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 352 gls~~~al~~aT~~~A~~lg~ 372 (450)
+++++++.+..+.|..+++++
T Consensus 238 ~~~~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 238 PEPADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999875
No 124
>PRK10425 DNase TatD; Provisional
Probab=98.88 E-value=5e-07 Score=81.21 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=131.8
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CceEEEEeccccCC-Cc
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPE-NA 119 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~ 119 (450)
|||+|+|+....+. ++......++...||..++..+ .+.+......+..... ....++.|+..... ..
T Consensus 1 ~iDtH~HL~~~~~~--~d~~~vl~~a~~~gv~~~i~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~ 71 (258)
T PRK10425 1 MFDIGVNLTSSQFA--KDRDDVVARAFAAGVNGMLITG-------TNLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQA 71 (258)
T ss_pred CEEeeeCcCChhhh--ccHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHhCCCEEEEEEeCcCccccCCH
Confidence 68999999754332 4567778888899999888775 2233334444433322 33445555543322 22
Q ss_pred cchHHHHHHHHc-CCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050 120 YNASALEALLNA-GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 197 (450)
Q Consensus 120 ~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+.+.++.+. .+.++.. ..++...........+.+++.+++|+++++||.+|.++..
T Consensus 72 ~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~------------------- 132 (258)
T PRK10425 72 ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH------------------- 132 (258)
T ss_pred HHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch-------------------
Confidence 334555555542 2222221 1111100000112246688899999999999999996432
Q ss_pred cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050 198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 277 (450)
Q Consensus 198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 277 (450)
+.++++.++.. +..+--+.|+.+ .+.+.++++.+.|..++.. ....
T Consensus 133 ---------------~~~l~iL~~~~-----~~~~~~i~H~fs--G~~~~~~~~l~~G~~~si~--g~i~---------- 178 (258)
T PRK10425 133 ---------------ERFMALLEPWL-----DKLPGAVLHCFT--GTREEMQACLARGLYIGIT--GWVC---------- 178 (258)
T ss_pred ---------------HHHHHHHHHhc-----cCCCCeEEEecC--CCHHHHHHHHHCCCEEEEC--ceee----------
Confidence 45555555421 011112468877 6677888887777655542 2100
Q ss_pred CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHH
Q 013050 278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLE 356 (450)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~ 356 (450)
.. +.......+.+.+.. -.+.+.||+ |+..... |...+.|...-...+......+ .-.+++.+
T Consensus 179 ------~~--~~~~~~~~~~~~ipl-drlLlETDa-P~l~P~~------~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~ 242 (258)
T PRK10425 179 ------DE--RRGLELRELLPLIPA-ERLLLETDA-PYLLPRD------LTPKPASRRNEPAFLPHILQRIAHWRGEDAA 242 (258)
T ss_pred ------cc--cccHHHHHHHHhCCh-HHEEEeccC-CCCCCCC------cCCCCCCCCCCcHHHHHHHHHHHHHHCcCHH
Confidence 00 000111111222211 135689994 4432211 0000001111223344444443 45689999
Q ss_pred HHHHHHhhchhHHhCC
Q 013050 357 QLASWWSERPAKLAGQ 372 (450)
Q Consensus 357 ~al~~aT~~~A~~lg~ 372 (450)
++.+..+.|.-+++++
T Consensus 243 ~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 243 WLAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999888874
No 125
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=98.75 E-value=8.9e-07 Score=80.06 Aligned_cols=245 Identities=21% Similarity=0.218 Sum_probs=127.0
Q ss_pred eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCceEEEEeccccCC-Cc
Q 013050 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE-NA 119 (450)
Q Consensus 44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~ 119 (450)
||+|+|+....+ .++.....+.+...|++.++..+ ..........+.... .....++.|+..... ..
T Consensus 1 iD~H~Hl~~~~~--~~~~~~~~~~~~~~g~~~~i~~~-------~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~ 71 (255)
T PF01026_consen 1 IDAHCHLDSPRF--EEDRPEVLERAREAGVSAIIIVS-------TDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNE 71 (255)
T ss_dssp EEEEE-TTSGGG--TTTHHHHHHHHHHTTEEEEEEEE-------SSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSH
T ss_pred CcCccCCCChhh--CcCHHHHHHHHHHcCCCEEEEcC-------CCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhH
Confidence 799999987221 23456667888999999998764 112233333332222 234445555544333 23
Q ss_pred cchHHHHHH--HH-cCCcEEEE-ecccC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcc
Q 013050 120 YNASALEAL--LN-AGVLGLKS-FMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 194 (450)
Q Consensus 120 ~~~~~~~~~--~~-~g~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 194 (450)
...+.+.++ .. ..+.++.. ..++. ..........+.+.+.+++|+++++||.+|++...
T Consensus 72 ~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~---------------- 135 (255)
T PF01026_consen 72 EDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH---------------- 135 (255)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH----------------
T ss_pred HHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH----------------
Confidence 334556666 33 33434422 12221 10111123446788899999999999999996532
Q ss_pred ccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050 195 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 274 (450)
Q Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 274 (450)
..++++.++.... +. --+.|+.+ .+.+.++++.+.|..++. ++....
T Consensus 136 ------------------~~~l~il~~~~~~----~~-~~i~H~f~--g~~~~~~~~~~~g~~~S~--~~~~~~------ 182 (255)
T PF01026_consen 136 ------------------EELLEILKEYGPP----NL-RVIFHCFS--GSPEEAKKFLDLGCYFSF--SGAITF------ 182 (255)
T ss_dssp ------------------HHHHHHHHHTTGG----TS-EEEETT----S-HHHHHHHHHTTEEEEE--EGGGGS------
T ss_pred ------------------HHHHHHHHhcccc----ce-eEEEecCC--CCHHHHHHHHhcCceEEe--cccccc------
Confidence 4666676665110 12 44578877 677777777777654444 332110
Q ss_pred CCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCC
Q 013050 275 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 353 (450)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gl 353 (450)
+.......+.+.+. --.+.+.||. |.....+.. +.......+...+..+ .-.++
T Consensus 183 -------------~~~~~~~~~~~~ip-~drillETD~-P~~~~~~~~----------~~~~~p~~i~~~~~~la~~~~~ 237 (255)
T PF01026_consen 183 -------------KNSKKVRELIKAIP-LDRILLETDA-PYLAPDPYR----------GKPNEPSNIPKVAQALAEIKGI 237 (255)
T ss_dssp -------------TTSHHHHHHHHHS--GGGEEEE-BT-TSSECTTST----------TSE--GGGHHHHHHHHHHHHTS
T ss_pred -------------cccHHHHHHHhcCC-hhhEEEcCCC-CcCCccccC----------CCCCChHHHHHHHHHHHHHcCC
Confidence 01111222222221 1236799994 432211100 1122223345554444 44689
Q ss_pred CHHHHHHHHhhchhHHhC
Q 013050 354 TLEQLASWWSERPAKLAG 371 (450)
Q Consensus 354 s~~~al~~aT~~~A~~lg 371 (450)
+++++.+..+.|..+++|
T Consensus 238 ~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 238 SLEELAQIIYENAKRLFG 255 (255)
T ss_dssp THHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999886
No 126
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.69 E-value=3.8e-06 Score=77.94 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
...+.+++.+++|++.|+||.+|++.... ....+++.+++. + ...
T Consensus 133 ~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~--g--~~~ 177 (293)
T cd00530 133 LEEKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEE--G--VDP 177 (293)
T ss_pred HHHHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHc--C--CCh
Confidence 34467889999999999999999964200 013344444432 0 012
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEE
Q 013050 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDML 308 (450)
Q Consensus 231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~ 308 (450)
.++.+.|+... .+.+.++++.+.|..+......... ....++ .......+.++++.+. .+++
T Consensus 178 ~~~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~~~-------------~~~~~~--~~~~~~~l~~~~~~~~~d~ill 241 (293)
T cd00530 178 SKVVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGKDK-------------IFGYPS--DETRADAVKALIDEGYGDRLLL 241 (293)
T ss_pred hheEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCccc-------------ccCCCC--HHHHHHHHHHHHHCCCcCCEEE
Confidence 23567888733 4567788887887654442211000 000000 1233445677777776 4589
Q ss_pred cCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050 309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 370 (450)
Q Consensus 309 gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l 370 (450)
+||.. .....+. .++..+....+......+...|++.+++.++.|.||+++|
T Consensus 242 ~TD~p-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 242 SHDVF-RKSYLEK---------RYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred eCCcC-chhhhhh---------ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 99953 3211110 0111233333444555667889999999999999999875
No 127
>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria.
Probab=98.50 E-value=3.9e-07 Score=69.72 Aligned_cols=140 Identities=24% Similarity=0.328 Sum_probs=86.0
Q ss_pred CCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050 36 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 115 (450)
Q Consensus 36 g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (450)
|++++|||||.|+|+..+++.+.+.+.+ |+..+| ++.|... .+.+..-+
T Consensus 1 ~kli~~g~vd~hVhlrepg~~~keti~t-----------T~~amp-nt~paPa----------------~itv~~~~--- 49 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGFEAKETIET-----------TWCAMP-NTFPAPA----------------GITVEDDG--- 49 (142)
T ss_pred Cceeehhhhhhhhhhhcccchhhhhhhc-----------eeeecC-ccCCCCc----------------ceeeeecC---
Confidence 6899999999999999988765433322 777787 5555331 01111000
Q ss_pred CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
..+..+.. ++.-........+.++. .+.+..+..|+++...+..+....+ .+.
T Consensus 50 ---------------~e~~afsd-------dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~g----e~~ 102 (142)
T PF12890_consen 50 ---------------EEAFAFSD-------DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDG----ELP 102 (142)
T ss_pred ---------------cceEEEec-------CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccc----hhh
Confidence 00111111 22223455566677777 8899999999987765443332221 111
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~ 241 (450)
-... ..++-.||...+.+.+.+++.. +...|+.|+++.
T Consensus 103 q~~g-~~L~G~cEs~~~~rd~lLak~~-------g~~yhVchvstk 140 (142)
T PF12890_consen 103 QFLG-VYLKGNCESVQCARDVLLAKAT-------GCHYHVCHVSTK 140 (142)
T ss_pred HHhC-CcCCCcchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence 1111 1134478889999999999976 999999999874
No 128
>PRK09875 putative hydrolase; Provisional
Probab=98.38 E-value=0.00021 Score=65.23 Aligned_cols=254 Identities=15% Similarity=0.162 Sum_probs=139.4
Q ss_pred cceeeccccCCCC--CCc-----ccc---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 013050 42 GLIDVHAHLDDPG--RTE-----WEG---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 111 (450)
Q Consensus 42 G~iD~H~H~~~~~--~~~-----~~~---~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (450)
|+..+|=|+.... ... .++ .....+.+.+.|..|+++.. ....-.....+....+. ..+++...
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T--~~g~GRd~~~l~~is~~----tgv~Iv~~ 80 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT--NRYMGRNAQFMLDVMRE----TGINVVAC 80 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecC--CCccCcCHHHHHHHHHH----hCCcEEEc
Confidence 8889999984321 111 122 23345577889999999984 22223444444444333 34555443
Q ss_pred ccccCCC--c-----cchHHHH----HHHHcCCc------EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 112 GGLVPEN--A-----YNASALE----ALLNAGVL------GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 112 ~~~~~~~--~-----~~~~~~~----~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
.++.... + ...+++. +.+..|+. ++-.-++.+. ........+.++.+.+.+.+.|.+|.+|.
T Consensus 81 TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~-~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht 159 (292)
T PRK09875 81 TGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSE-GKITPLEEKVFIAAALAHNQTGRPISTHT 159 (292)
T ss_pred CcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCC-CCCCHHHHHHHHHHHHHHHHHCCcEEEcC
Confidence 3322211 1 1122222 22223322 2210111110 00112234556666777778899999997
Q ss_pred CChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc---eEEEEecCChhHHHHHHHHH
Q 013050 175 EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA---HLHIVHLSDASSSLDLLMEA 251 (450)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~ 251 (450)
.... ... +.++++++. |. ++.+.|+... .+.+.++++
T Consensus 160 ~~~~-------------------------------~g~-e~l~il~e~-------Gvd~~rvvi~H~d~~-~d~~~~~~l 199 (292)
T PRK09875 160 SFST-------------------------------MGL-EQLALLQAH-------GVDLSRVTVGHCDLK-DNLDNILKM 199 (292)
T ss_pred CCcc-------------------------------chH-HHHHHHHHc-------CcCcceEEEeCCCCC-CCHHHHHHH
Confidence 3211 112 235555544 44 6888999766 788888888
Q ss_pred HhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccc
Q 013050 252 KTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLK 329 (450)
Q Consensus 252 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~ 329 (450)
.+.|..+..+..-. . ...| .....+.+....+.| -.+.+++|........
T Consensus 200 ~~~G~~l~fD~~g~--------------~-~~~p---d~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~---------- 251 (292)
T PRK09875 200 IDLGAYVQFDTIGK--------------N-SYYP---DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK---------- 251 (292)
T ss_pred HHcCCEEEeccCCC--------------c-ccCC---HHHHHHHHHHHHhcCCCCeEEEeCCCCCccccc----------
Confidence 88886555431110 0 0011 122345556666666 3477899974332111
Q ss_pred cCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 013050 330 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 371 (450)
Q Consensus 330 ~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg 371 (450)
.. |-.+....+...+..+++.|+|.+++=+|...||+++|+
T Consensus 252 ~~-gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 252 AN-GGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred cc-CCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 11 325666667777777889999999999999999999874
No 129
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=98.21 E-value=0.00026 Score=66.54 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
.+.+.+.++++.|+++|+++.+|+.+... ...+...++ +. +
T Consensus 169 ~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~-----------------------------~~~~~~~~~---~~-------g 209 (324)
T TIGR01430 169 GPPPDFVRAFAIARELGLHLTVHAGELGG-----------------------------PESVREALD---DL-------G 209 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEecCCCCC-----------------------------hHHHHHHHH---Hc-------C
Confidence 45788999999999999999999954311 000111111 11 1
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310 (450)
Q Consensus 231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt 310 (450)
. -.+.|+....+..+.++.+++.|+.+.+ ||....... ..+ .....++.++++.|+.+++||
T Consensus 210 ~-~ri~Hg~~l~~~~~~i~~l~~~gi~v~~--cP~Sn~~l~-----------~~~----~~~~~pi~~l~~~Gv~v~igT 271 (324)
T TIGR01430 210 A-TRIGHGVRALEDPELLKRLAQENITLEV--CPTSNVALG-----------VVK----SLAEHPLRRFLEAGVKVTLNS 271 (324)
T ss_pred c-hhcchhhhhccCHHHHHHHHHcCceEEE--CCccccccc-----------ccC----CcccChHHHHHHCCCEEEECC
Confidence 1 1234444321334567777777765554 765432211 000 011234667789999999999
Q ss_pred CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
|....... .+...+.. ....|+++++ +.++|.|+++.+-.
T Consensus 272 D~~~~~~~---------------------~l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~ 312 (324)
T TIGR01430 272 DDPAYFGS---------------------YLTEEYEIAAKHAGLTEEE-LKQLARNALEGSFL 312 (324)
T ss_pred CCCcccCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 96432110 12223333 3457999999 88999999998765
No 130
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=98.21 E-value=0.00023 Score=67.03 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
.+.+.+..+++.|+++|+++.+|+.+... ...+..+++.+. + .
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~-----------------------------~~~~~~a~~~~g------~--~ 212 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGG-----------------------------PESVRDALDLLG------A--E 212 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCC-----------------------------HHHHHHHHHHcC------C--c
Confidence 36789999999999999999999943211 011222222111 1 2
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310 (450)
Q Consensus 231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt 310 (450)
.-.|+.++. ...+.++.+++.|+.+.. ||....... ..+ .....++..+++.|+.+++||
T Consensus 213 ~i~H~~~l~---~~~~~~~~l~~~gi~v~~--~P~sn~~l~-----------~~~----~~~~~p~~~l~~~Gv~v~lgT 272 (325)
T cd01320 213 RIGHGIRAI---EDPELVKRLAERNIPLEV--CPTSNVQTG-----------AVK----SLAEHPLRELLDAGVKVTINT 272 (325)
T ss_pred ccchhhccC---ccHHHHHHHHHcCCeEEE--CCCcccccc-----------ccC----CcccChHHHHHHCCCEEEECC
Confidence 223444443 233567777777766554 664321110 000 011234667789999999999
Q ss_pred CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
|..+... . .+...+.. ....++++++ +..+|.|++++.-+
T Consensus 273 D~~~~~~-~--------------------~~~~e~~~~~~~~~l~~~e-l~~~~~na~~~~f~ 313 (325)
T cd01320 273 DDPTVFG-T--------------------YLTDEYELLAEAFGLTEEE-LKKLARNAVEASFL 313 (325)
T ss_pred CCCcccC-C--------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 9643211 0 12222233 3456999999 55688999988765
No 131
>PRK09358 adenosine deaminase; Provisional
Probab=98.04 E-value=0.0011 Score=62.88 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
.+.+.+.++++.|+++|+++.+|+.+... ...+..+++... + .
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~-----------------------------~~~~~~al~~lg------~--~ 221 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGG-----------------------------PESIWEALDELG------A--E 221 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCc-----------------------------hhHHHHHHHHcC------C--c
Confidence 46788999999999999999999954211 011222232111 1 2
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310 (450)
Q Consensus 231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt 310 (450)
.-.|..++. +..+.++.+++.|+.+.+ ||...... ...+.+ ...++.++++.|+.+++||
T Consensus 222 ri~Hg~~l~---~~~~~~~~l~~~gi~v~~--cP~Sn~~l-----------~~~~~~----~~~pi~~l~~~Gv~v~lgT 281 (340)
T PRK09358 222 RIGHGVRAI---EDPALMARLADRRIPLEV--CPTSNVQT-----------GAVPSL----AEHPLKTLLDAGVRVTINT 281 (340)
T ss_pred ccchhhhhc---cCHHHHHHHHHcCCeEEE--CCCccccc-----------cccCCc----ccChHHHHHHCCCEEEECC
Confidence 223333433 234566777777765554 77532211 010000 1234667789999999999
Q ss_pred CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
|..+.... .+...+.. ....|++++++ ...+.|+.+..-+
T Consensus 282 D~~~~~~~---------------------~l~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~ 322 (340)
T PRK09358 282 DDPLVFGT---------------------TLTEEYEALAEAFGLSDEDL-AQLARNALEAAFL 322 (340)
T ss_pred CCCcccCC---------------------CHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCC
Confidence 96433210 12223333 34469999995 5567887776544
No 132
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.97 E-value=0.0023 Score=54.21 Aligned_cols=239 Identities=18% Similarity=0.222 Sum_probs=123.7
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh-----------cCCceEEEEe
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-----------KRIYVDVGFW 111 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 111 (450)
+||+|+|+...++ .-...+..+|+-+++...+...+. ...+.+....++.. .+..+.++.+
T Consensus 2 ~iD~HiH~d~r~~-------eDlekMa~sGI~~Vit~AhdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 2 YIDSHIHLDVRGF-------EDLEKMALSGIREVITLAHDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred ccccccccccccH-------HHHHHHHHhChhhhhhcccCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 7999999986653 234566778888887764333332 22333332222221 1223344444
Q ss_pred ccccCCC-ccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccC
Q 013050 112 GGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 189 (450)
Q Consensus 112 ~~~~~~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 189 (450)
+...+.+ ...++.+.++.. .++.++... +. +..+....+-+++-+++|+++++|+.+|....+
T Consensus 74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGEi-GL---e~~t~~E~evf~~QL~LA~e~dvPviVHTPr~n----------- 138 (254)
T COG1099 74 PRAIPPELEEVLEELEELLSNEDVVAIGEI-GL---EEATDEEKEVFREQLELARELDVPVIVHTPRRN----------- 138 (254)
T ss_pred CCCCCchHHHHHHHHHhhcccCCeeEeeec-cc---ccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCc-----------
Confidence 4333322 122344444433 344444331 11 111223456688899999999999999994322
Q ss_pred cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050 190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 269 (450)
Q Consensus 190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 269 (450)
-.+.+.++++.+.... .....+.+.|++. ++ +++.-..+..+-..++|.-+
T Consensus 139 ------------------K~e~t~~ildi~~~~~----l~~~lvvIDH~N~--et---v~~vld~e~~vGlTvqPgKl-- 189 (254)
T COG1099 139 ------------------KKEATSKILDILIESG----LKPSLVVIDHVNE--ET---VDEVLDEEFYVGLTVQPGKL-- 189 (254)
T ss_pred ------------------chhHHHHHHHHHHHcC----CChhheehhcccH--HH---HHHHHhccceEEEEecCCcC--
Confidence 1345677777777540 1123366788776 33 44333334333333344211
Q ss_pred cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH
Q 013050 270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349 (450)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 349 (450)
.......+.+... .-.+.+.||.. +..... ..++...-...
T Consensus 190 -------------------t~~eAveIV~ey~-~~r~ilnSD~~-s~~sd~------------------lavprtal~m~ 230 (254)
T COG1099 190 -------------------TVEEAVEIVREYG-AERIILNSDAG-SAASDP------------------LAVPRTALEME 230 (254)
T ss_pred -------------------CHHHHHHHHHHhC-cceEEEecccc-cccccc------------------hhhhHHHHHHH
Confidence 1122111211111 24567888843 211111 12344434456
Q ss_pred hcCCCHHHHHHHHhhchhHHhCC
Q 013050 350 KYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 350 ~~gls~~~al~~aT~~~A~~lg~ 372 (450)
..|+..+++-+.+-.|+-+++|+
T Consensus 231 ~~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 231 ERGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred HhcCCHHHHHHHHHHHHHHHhCc
Confidence 67899999999999998888775
No 133
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=97.82 E-value=2e-05 Score=50.22 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=21.7
Q ss_pred eEEEEEEECCeEEEecCcccCCCCCcccccC
Q 013050 420 GKVLATISRGNLVYKEGNHAPAACGSPILAT 450 (450)
Q Consensus 420 ~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~~ 450 (450)
.-|.+|||||++++++|++++...|++|++.
T Consensus 18 ~GI~~V~VNG~~vv~~g~~t~~~~G~~lrr~ 48 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVEDGEVTGARPGRVLRRP 48 (48)
T ss_dssp BSEEEEEETTEEEECTTEESSS----B----
T ss_pred CCEEEEEECCEEEEECCeECCCCCCeEecCC
Confidence 4689999999999999999999999999873
No 134
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=97.70 E-value=0.038 Score=50.24 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=70.6
Q ss_pred cceeeccccCCCCCCc----------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 013050 42 GLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 111 (450)
Q Consensus 42 G~iD~H~H~~~~~~~~----------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (450)
|.||+|.|+..+...+ .-........+-..||+..+-+.....+ .... .+....+ .......+..
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~-~~n~-~~~~~~~--~~~r~~g~~~- 75 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYG-ADNS-NLLDALA--SNGKARGGAT- 75 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccC-CchH-HHHHHHh--hCCCeEEEEE-
Confidence 6799999997543211 1224445667778999988876411111 1111 1111111 1111112111
Q ss_pred ccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 112 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
+.+.. ...+.++++.+.|+.|++......+ ..+.+.+.+.++.+.++|+++.+|+.
T Consensus 76 --~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~~-----~~~~~~~~~~~~~~~~~gl~v~~~~~ 131 (263)
T cd01311 76 --VDPRT-TTDAELKEMHDAGVRGVRFNFLFGG-----VDNKDELDEIAKRAAELGWHVQVYFD 131 (263)
T ss_pred --ECCCC-CCHHHHHHHHHCCCeEEEEecccCC-----CCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 21222 2357788888899999998643221 12667788999999999999999984
No 135
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=97.66 E-value=0.001 Score=61.21 Aligned_cols=262 Identities=17% Similarity=0.133 Sum_probs=126.1
Q ss_pred cceeeccccCCCCC-------Cccc----c---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE
Q 013050 42 GLIDVHAHLDDPGR-------TEWE----G---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 107 (450)
Q Consensus 42 G~iD~H~H~~~~~~-------~~~~----~---~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (450)
|++.+|=|+..... ..++ + .....+.+.+.|..++++.. . ...-.....+....+. ..++
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T-~-~g~GRd~~~l~~is~~----tGv~ 80 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDAT-P-IGLGRDVEALREISRR----TGVN 80 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE---S-GGGTB-HHHHHHHHHH----HT-E
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecC-C-cccCcCHHHHHHHHHH----hCCe
Confidence 78889999843211 1122 2 22235577889999999984 1 1223444444444433 2344
Q ss_pred EEEeccccC--CCc-----cchHHHHHH----HHcCCc-------EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013050 108 VGFWGGLVP--ENA-----YNASALEAL----LNAGVL-------GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 169 (450)
Q Consensus 108 ~~~~~~~~~--~~~-----~~~~~~~~~----~~~g~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 169 (450)
+....++.. ..+ ...+++.++ +..|+. -++...+.. .........++.+....++-|.+
T Consensus 81 II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~---~it~~E~k~lrAaa~A~~~TG~p 157 (308)
T PF02126_consen 81 IIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSN---PITPLEEKVLRAAARAHKETGAP 157 (308)
T ss_dssp EEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTT---BCEHHHHHHHHHHHHHHHHHT-E
T ss_pred EEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccC---CCCHHHHHHHHHHHHHHHHhCCe
Confidence 433322221 111 112222222 334433 122222111 11112234455555566678999
Q ss_pred EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHH
Q 013050 170 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 249 (450)
Q Consensus 170 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 249 (450)
|.+|...... . -.+.++++++... .--++.+.|+... .+.+.++
T Consensus 158 I~~H~~~g~~--------------~-----------------~~e~~~il~e~Gv----~~~rvvigH~D~~-~D~~y~~ 201 (308)
T PF02126_consen 158 ISTHTGRGTR--------------M-----------------GLEQLDILEEEGV----DPSRVVIGHMDRN-PDLDYHR 201 (308)
T ss_dssp EEEEESTTGT--------------C-----------------HHHHHHHHHHTT------GGGEEETSGGGS-T-HHHHH
T ss_pred EEEcCCCCCc--------------C-----------------HHHHHHHHHHcCC----ChhHeEEeCCCCC-CCHHHHH
Confidence 9999943220 0 1233444444300 0235778898865 7888899
Q ss_pred HHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC---hhhHHHHHHHHhcCCe--eEEcCCCCCCChhhhcccC
Q 013050 250 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD---AANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDE 324 (450)
Q Consensus 250 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~g~~--~~~gtD~~~~~~~~~~~~~ 324 (450)
++.+.|+.+..+....... + ...+|.+.. ....+.+..+++.|.. +.++.|.......
T Consensus 202 ~la~~G~~l~~D~~g~~~~---------g--~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~------ 264 (308)
T PF02126_consen 202 ELADRGVYLEFDTIGREFS---------G--KDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRL------ 264 (308)
T ss_dssp HHHHTT-EEEETTTT-B-T---------T--TTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGS------
T ss_pred HHHhcCCEEEecCCccccc---------C--cccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccc------
Confidence 9888887666544321100 0 000011111 2334556777777764 6888885431110
Q ss_pred CCccccCCCCcchh--hHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050 325 GNFLKAWGGISSLQ--FVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 370 (450)
Q Consensus 325 ~~~~~~~~g~~~~~--~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l 370 (450)
.+.|..+.. ..+...+-.+++.|+|.+++=++...||+++|
T Consensus 265 -----~~~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 265 -----YRYGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp -----SSCCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred -----cccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence 011212221 22234445567889999999999999999987
No 136
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=97.51 E-value=0.0028 Score=57.96 Aligned_cols=187 Identities=15% Similarity=0.119 Sum_probs=96.9
Q ss_pred CccchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHH-HHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050 118 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI-KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195 (450)
Q Consensus 118 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
..+..+++.+.+ +.|+.|++.+....+. ......+ ..+++.|+++|++|.+|+.....
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~---------------- 142 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGGF----DPDDPRLDDPIFEAAEELGLPVLIHTGMTGF---------------- 142 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETTC----CTTSGHCHHHHHHHHHHHT-EEEEEESHTHH----------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCcc----ccccHHHHHHHHHHHHhhccceeeeccccch----------------
Confidence 345566777776 7899999987644321 2333344 48999999999999999640000
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275 (450)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 275 (450)
............+..++.+ +++.++.+.|+.......+....+.+....++++++.....
T Consensus 143 -------~~~~~~~~~~~~~~~~~~~------~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~------- 202 (273)
T PF04909_consen 143 -------PDAPSDPADPEELEELLER------FPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPF------- 202 (273)
T ss_dssp -------HHHHHHHHHHHHHTTHHHH------STTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSS-------
T ss_pred -------hhhhHHHHHHHHHHHHHHH------hcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccc-------
Confidence 0000112234455555555 56899999999864112222222222223466655432110
Q ss_pred CCCCceEEcCCCCChhhHHHHHHHHhc-C-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC
Q 013050 276 DGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 353 (450)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl 353 (450)
....+ .......+.+++.. | -.++.|||. |...... .............+
T Consensus 203 -----~~~~~---~~~~~~~l~~~~~~~g~drilfGSD~-P~~~~~~-------------------~~~~~~~~~~~~~l 254 (273)
T PF04909_consen 203 -----WYFWP---PSFDRPFLRRAVDEFGPDRILFGSDY-PHPDGAS-------------------PYEYIWEAYFLDDL 254 (273)
T ss_dssp -----EEEET---THHCHHHHHHHHHHHTGGGEEEE--T-TSSTHHH-------------------HHHHHHHHHHHHHS
T ss_pred -----cccCc---ccccHHHHHHHHHHhCCceEEecCCC-CCCCccc-------------------cHHHHHHhhhccCC
Confidence 00111 12223333333332 2 247899995 4322211 01111111111117
Q ss_pred CHHHHHHHHhhchhHHhCC
Q 013050 354 TLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 354 s~~~al~~aT~~~A~~lg~ 372 (450)
|.++.=+....|+++++++
T Consensus 255 ~~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 255 SEEEREKILYDNARRLYGL 273 (273)
T ss_dssp SHHHHHHHHTHHHHHHHTC
T ss_pred CHHHHHHHHhHhHHHHcCc
Confidence 9999999999999999985
No 137
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=97.11 E-value=0.1 Score=45.77 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050 152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 231 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (450)
..+.+..++++|+..+.+|++|.++.+ .+.+.++.++++.. |.
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~------------------------------~~~~~~i~~~ak~~-------G~ 185 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLD------------------------------EETYEEIAEMAKEA-------GI 185 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC------------------------------hHHHHHHHHHHHHh-------CC
Confidence 456678888888889999999986543 23356666666665 42
Q ss_pred ---eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEE
Q 013050 232 ---HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 308 (450)
Q Consensus 232 ---~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 308 (450)
++..+|... .+......|+..+ + ...+....++++.|..+++
T Consensus 186 ~~~~VVkHha~p------~v~~~~~~Gi~pS---------------------------V--~asr~~v~~a~~~g~~Fmm 230 (285)
T COG1831 186 KPYRVVKHHAPP------LVLKCEEVGIFPS---------------------------V--PASRKNVEDAAELGPRFMM 230 (285)
T ss_pred CcceeEeecCCc------cchhhhhcCcCCc---------------------------c--cccHHHHHHHHhcCCceEe
Confidence 343344433 2333322332111 1 1223356778899999999
Q ss_pred cCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 309 gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
-||.- -++. .++..-+.-..-......+....++.+.+.+.--.||.+++|+
T Consensus 231 ETDyI-DDp~-----------RpgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~ 282 (285)
T COG1831 231 ETDYI-DDPR-----------RPGAVLGPKTVPRRTREILEKGDLTEEDVYRIHVENPERVYGI 282 (285)
T ss_pred ecccc-cCcc-----------cCCCcCCccchhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCc
Confidence 99963 1111 1112222222222344445566688999999999999999987
No 138
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=97.04 E-value=0.23 Score=44.78 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=63.0
Q ss_pred ceEEEEecC-ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eE
Q 013050 231 AHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DM 307 (450)
Q Consensus 231 ~~~~~~h~~-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~ 307 (450)
.++.+.|+. +. +.....+.++.+|.-+..+..-... ..| .......+.+..++|.. +.
T Consensus 193 ~~v~igH~d~n~-dd~~y~~~l~~~Ga~l~fD~iG~d~---------------y~p---d~~r~~~~~~l~~~gy~d~i~ 253 (316)
T COG1735 193 RKVSIGHMDPNT-DDVYYQKKLADRGAFLEFDRIGKDK---------------YYP---DEDRIAPLLELVARGYADLIL 253 (316)
T ss_pred hHeeEeccCCCC-ChHHHHHHHHhcCceEEecccCccc---------------cCc---HHHhhhhHHHHHHhhHhhhee
Confidence 358889998 44 8888999998888655544321111 111 11222333444444432 23
Q ss_pred Ec-CCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 308 LS-SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 308 ~g-tD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
++ .|.+-....... ......+-.+....+...+-.+++.|++-+.+=.|.--||+++|..
T Consensus 254 ls~d~~~~~~~~~~~-----~~~~~~~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 254 LSHDDICLSDDVFLK-----SMLKANGGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred cccchhhhhhhHHHH-----hhhhhcCCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 44 222211111000 0001113334444455566677889999777778888899999875
No 139
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=96.69 E-value=0.22 Score=46.36 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcC-CcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 152 NASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
+...+...+..|++.| +++.+|+.+... ...+..++.... .
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~-----------------------------~~~v~~~~~~~~---------~ 192 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGN-----------------------------REELLQALLLLP---------D 192 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCC-----------------------------hHHHHHHHHhcc---------c
Confidence 5778889999999999 999999954321 112333443321 3
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310 (450)
Q Consensus 231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt 310 (450)
.--|..++. +..+.++.+++.++++.+ ||....... ..+. ....++...++.|+.++++|
T Consensus 193 RIgHg~~~~---~~p~~~~~l~~~~i~ie~--CP~SN~~~~-----------~~~~----~~~hP~~~~~~~G~~v~i~T 252 (305)
T cd00443 193 RIGHGIFLL---KHPELIYLVKLRNIPIEV--CPTSNVVLG-----------TVQS----YEKHPFMRFFKAGLPVSLST 252 (305)
T ss_pred eeeceEecC---CCHHHHHHHHHcCCEEEE--Ccchhhhhc-----------CCCC----hhhChHHHHHHCCCeEEEeC
Confidence 334444444 444567777777765554 776433221 1111 11233667788999999999
Q ss_pred CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhH
Q 013050 311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAK 368 (450)
Q Consensus 311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~gls~~~al~~aT~~~A~ 368 (450)
|....... .+...+. .....+++.+++.+++ .|+-+
T Consensus 253 Dd~~~~~~---------------------~l~~E~~~~~~~~~l~~~~l~~l~-~nsi~ 289 (305)
T cd00443 253 DDPGIFGT---------------------SLSEEYSLAAKTFGLTFEDLCELN-RNSVL 289 (305)
T ss_pred CCCcccCC---------------------ChHHHHHHHHHHcCcCHHHHHHHH-HHHHH
Confidence 96533211 1222222 2456689999877665 44433
No 140
>PTZ00124 adenosine deaminase; Provisional
Probab=96.48 E-value=0.26 Score=46.73 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceE
Q 013050 154 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 233 (450)
Q Consensus 154 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (450)
..+..+++.|++.|+++.+|+.+... |. +...+..++..... ..--
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~------------------------~~--~~~~v~~ai~~l~~--------~RIG 251 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVT------------------------LP--NLNTLYSAIQVLKV--------KRIG 251 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCC------------------------CC--cchhHHHHHHHhCC--------Cccc
Confidence 55788999999999999999954210 00 00112222222221 2223
Q ss_pred EEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCC
Q 013050 234 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 313 (450)
Q Consensus 234 ~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~ 313 (450)
|..++. ...+.++.+++.++++.+ ||...... ...+. ....++...++.|++++++||..
T Consensus 252 HG~~~~---~d~~l~~~l~~~~I~lEv--CPtSN~~~-----------~~v~~----~~~HPi~~l~~~Gv~v~InTDDp 311 (362)
T PTZ00124 252 HGIRVA---ESQELIDMVKEKDILLEV--CPISNVLL-----------NNAKS----MDTHPIRKLYDAGVKVSVNSDDP 311 (362)
T ss_pred cccccC---CCHHHHHHHHHcCCeEEE--CCcchhhh-----------hcCCc----hhhHHHHHHHHCCCcEEEeCCCc
Confidence 333433 345667777777765544 88654322 11111 22355778899999999999965
Q ss_pred CCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhh
Q 013050 314 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSE 364 (450)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~ 364 (450)
.... ..+...+.. ....|+|.+++.+++..
T Consensus 312 ~~~~---------------------t~l~~Ey~~~~~~~gls~~~l~~l~~n 342 (362)
T PTZ00124 312 GMFL---------------------TNINDDYEELYTHLNFTLADFMKMNEW 342 (362)
T ss_pred cccC---------------------CChhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3311 112333333 35679999999887443
No 141
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=96.42 E-value=0.18 Score=47.60 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhcC--CcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050 152 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 229 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (450)
+...+..+++.|++.| +++.+|+.+... .+ ..+ .+.+..++.+..
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~-----------~~---------~~~----~~~v~~al~lg~--------- 223 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNG-----------DG---------TET----DENLVDALLLNT--------- 223 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcC-----------CC---------CCC----hhHHHHHHHhCC---------
Confidence 5678889999999999 999999954320 00 000 112444443322
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEc
Q 013050 230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 309 (450)
Q Consensus 230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~g 309 (450)
..-=|..++. +..+.++.+++.++++ ++||....... ..+. ....++...++.|++++++
T Consensus 224 ~RIGHG~~~~---~dp~ll~~l~~~~I~l--EvCPtSN~~~~-----------~v~~----~~~HPl~~ll~~Gv~vtin 283 (345)
T cd01321 224 KRIGHGFALP---KHPLLMDLVKKKNIAI--EVCPISNQVLG-----------LVSD----LRNHPAAALLARGVPVVIS 283 (345)
T ss_pred CcCccccccC---cCHHHHHHHHHcCCeE--EECcchhhhhc-----------cccc----hhhChHHHHHHCCCeEEEe
Confidence 2222223332 4456777777777654 44776443321 1111 1234467889999999999
Q ss_pred CCCCC
Q 013050 310 SDHSP 314 (450)
Q Consensus 310 tD~~~ 314 (450)
||...
T Consensus 284 TDDp~ 288 (345)
T cd01321 284 SDDPG 288 (345)
T ss_pred CCCcc
Confidence 99653
No 142
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=95.76 E-value=0.25 Score=46.63 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050 132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211 (450)
Q Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 211 (450)
++.|+....... ......+...++.|++.|+++.+|+.+... ...
T Consensus 164 ~vvG~dl~g~E~------~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~-----------------------------~~~ 208 (331)
T PF00962_consen 164 GVVGFDLAGDED------GGPPLKFAPAFRKAREAGLKLTVHAGETGG-----------------------------PEH 208 (331)
T ss_dssp TEEEEEEESSTT------STTGGGHHHHHHHHHHTT-EEEEEESSSST-----------------------------HHH
T ss_pred eEEEEEecCCcc------cCchHHHHHHHhhhcccceeecceecccCC-----------------------------ccc
Confidence 677776643221 223344888999999999999999954321 112
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChh
Q 013050 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 291 (450)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
+..++..+.. + ++.|........+.++.+++.++ .+++||......+. +. ..
T Consensus 209 ~~~ai~~l~~--------~---RIgHG~~~~~~p~l~~~~~~~~I--~iEvcptSN~~~~~-~~--------------~~ 260 (331)
T PF00962_consen 209 IRDAILLLGA--------D---RIGHGVRLIKDPELLELLAERQI--PIEVCPTSNVQLGA-VP--------------SY 260 (331)
T ss_dssp HHHHHHTST---------S---EEEE-GGGGGSHHHHHHHHHTT---EEEE-HHHHHHTTS-SS--------------TG
T ss_pred ccchhhhccc--------e---eecchhhhhhhhHHHHHHHHhCC--CeeeCCCcCcccce-ee--------------ec
Confidence 3333333111 2 34555433245567777777765 45558875544321 10 11
Q ss_pred hHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhH
Q 013050 292 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAK 368 (450)
Q Consensus 292 ~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~ 368 (450)
...++.+.++.|++++++||.... .+.. +...+.. ....++|.++..+++ .|+.+
T Consensus 261 ~~hP~~~~~~~gv~v~i~TDd~~~-------------------~~~~--l~~ey~~~~~~~~l~~~~l~~l~-~nsi~ 316 (331)
T PF00962_consen 261 EEHPLRKLLDAGVPVSINTDDPGV-------------------FGTT--LSDEYYLAAEAFGLSLADLKQLA-RNSIE 316 (331)
T ss_dssp GG-CHHHHHHTT-EEEE--BSHHH-------------------HT-S--HHHHHHHHHHHHT--HHHHHHHH-HHHHH
T ss_pred chhHHHHHHHcCCceeccCCCccc-------------------cCCC--cHHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence 223467778999999999995321 1111 3333333 456789998876554 34443
No 143
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=95.24 E-value=2.5 Score=39.00 Aligned_cols=172 Identities=19% Similarity=0.188 Sum_probs=97.0
Q ss_pred chHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccc
Q 013050 121 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 199 (450)
Q Consensus 121 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
..+++++.++ .|..+++......+ +..++..+..+++.|.++|++|.+|....... ... ..
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~----~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~----------~~~----~~ 175 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQG----FYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG----------AGL----EK 175 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccC----CCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----------ccc----cc
Confidence 4556666665 68889888543322 23455668899999999999999999543320 000 00
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC--ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050 200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 277 (450)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 277 (450)
....| -.+..++.+ +++.++.+.|+. .. =..+.+..+. ....++.+.+...
T Consensus 176 ~~~~p--------~~~~~va~~------fP~l~IVl~H~G~~~p-~~~~a~~~a~-~~~nvy~d~s~~~----------- 228 (293)
T COG2159 176 GHSDP--------LYLDDVARK------FPELKIVLGHMGEDYP-WELEAIELAY-AHPNVYLDTSGVR----------- 228 (293)
T ss_pred CCCCc--------hHHHHHHHH------CCCCcEEEEecCCCCc-hhHHHHHHHH-hCCCceeeeeccc-----------
Confidence 00122 234455554 668999999997 32 2333333332 2223444332210
Q ss_pred CCceEEcCCCCChhhHHHHHHHHhc--CCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050 278 DTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355 (450)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~ 355 (450)
.+..++ .+++.+.. .-.+++|||. |..... ..+......+++.
T Consensus 229 ---~~~~~~--------~~~~~~~~~~~dkilFGSD~-P~~~~~-----------------------~~l~~~~~l~l~~ 273 (293)
T COG2159 229 ---PKYFAP--------PLLEFLKELGPDKILFGSDY-PAIHPE-----------------------VWLAELDELGLSE 273 (293)
T ss_pred ---cccCCh--------HHHHHHHhcccCeEEecCCC-CCcCHH-----------------------HHHHHHHhcCCCH
Confidence 111111 22222222 2347899994 432111 1223456778999
Q ss_pred HHHHHHHhhchhHHhCC
Q 013050 356 EQLASWWSERPAKLAGQ 372 (450)
Q Consensus 356 ~~al~~aT~~~A~~lg~ 372 (450)
+..-+..-.|+++++++
T Consensus 274 e~k~kiL~~NA~rll~l 290 (293)
T COG2159 274 EVKEKILGENAARLLGL 290 (293)
T ss_pred HHHHHHHHHhHHHHhCc
Confidence 99999999999999998
No 144
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.56 Score=43.85 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (450)
..++.+.++++.++.+|+.+..|+.+... .+.+..++.+..-.
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~~-----------------------------~~~i~~al~~~~~~-------- 224 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAGG-----------------------------PESIRDALDLLGAE-------- 224 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccCC-----------------------------cHHHHHHHHHhchh--------
Confidence 46788999999999999999999954321 22234444443321
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310 (450)
Q Consensus 231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt 310 (450)
.+.|..-..+..+.++.+...++++.+ ||..... ....+++ ...++.++++.|+.+++.|
T Consensus 225 ---rI~HGi~~~~d~~L~~~l~~~qI~lev--CP~SNi~-----------~~~v~~~----~~hPf~~~~d~Gv~VsLnT 284 (345)
T COG1816 225 ---RIGHGIRAIEDPELLYRLAERQIPLEV--CPLSNIQ-----------LGVVPSL----AKHPFKKLFDAGVKVSLNT 284 (345)
T ss_pred ---hhccccccccCHHHHHHHHHhCCeeEE--CCcchhh-----------cccccch----hhCcHHHHHHcCCceEEcC
Confidence 233443322555788888888876655 7754321 1112111 2234678899999999999
Q ss_pred CCCCC
Q 013050 311 DHSPT 315 (450)
Q Consensus 311 D~~~~ 315 (450)
|..+.
T Consensus 285 Ddp~~ 289 (345)
T COG1816 285 DDPLY 289 (345)
T ss_pred CChhh
Confidence 96544
No 145
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=92.70 E-value=4.4 Score=40.14 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCC
Q 013050 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 313 (450)
Q Consensus 243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~ 313 (450)
...+.++.+++.++.+ ++||-..... ...+.++ ..++...++.|++++++||..
T Consensus 360 ~~P~l~~~vke~~I~l--EvCP~SN~~l-----------~~v~~~~----~HPl~~lla~Gvpv~InSDDP 413 (479)
T TIGR01431 360 KHPLVLQMLKERNIAV--EVNPISNQVL-----------QLVADLR----NHPCAYLFADNYPMVISSDDP 413 (479)
T ss_pred CCHHHHHHHHHhCCeE--EECccchhhh-----------cccCCcc----cChHHHHHHCCCcEEEeCCCc
Confidence 4456677777777554 4477533221 1222221 234667799999999999964
No 146
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=92.44 E-value=8.4 Score=35.17 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=68.9
Q ss_pred CCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050 36 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 115 (450)
Q Consensus 36 g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (450)
-.+.-|.++|+|.|+..+..... .......+...|+..++..+ . ...+ ............+.....++.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~d--~s~v~~~a~~~~v~~~~v~g-t--~~~d-~~~~~~l~~~y~~~v~~t~G~HP~~~ 84 (296)
T KOG3020|consen 11 RNFTNPMLEDIYCHIQAHPSDSD--ASQVLERAVQAGVSKLIVTG-T--SLKD-SKEALELAEKYPGSVYPTFGVHPHFS 84 (296)
T ss_pred hhhcchhhchhhhccccCCCCcc--chHHHHHHHhccceEEEEeC-C--Ccch-HHHHHHHHhhCCCceeeccCcCCCcc
Confidence 34566789999999987654321 23345566888999998886 2 1122 22222222222222222222222211
Q ss_pred C-CCc-----cchHHHHHHHHcC----CcEEEEe-cccCCCCCCC-CCCHHHHHHHHHHHHhcCCcEEEecCCh
Q 013050 116 P-ENA-----YNASALEALLNAG----VLGLKSF-MCPSGINDFP-MTNASHIKEGLSVLARYKRPLLVHAEME 177 (450)
Q Consensus 116 ~-~~~-----~~~~~~~~~~~~g----~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 177 (450)
. ... ...+++..+++.+ +..+..+ .++......+ .....-+++-+++|.+.++|+.+|.++.
T Consensus 85 ~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a 158 (296)
T KOG3020|consen 85 QEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSA 158 (296)
T ss_pred cchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhh
Confidence 1 111 1345555555552 1122111 1111110001 1123447788999999999999999653
No 147
>PRK08392 hypothetical protein; Provisional
Probab=91.66 E-value=8.7 Score=33.61 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.3
Q ss_pred eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
||.|+|..... ....+....+.+.+.|++.+.-.
T Consensus 1 ~D~H~HT~~sd--~~~~~~e~v~~A~~~Gl~~i~iT 34 (215)
T PRK08392 1 MDLHTHTVYSD--GIGSVRDNIAEAERKGLRLVGIS 34 (215)
T ss_pred CccccCCCCcC--CcCCHHHHHHHHHHcCCCEEEEc
Confidence 69999987653 23447778889999999987543
No 148
>PRK08609 hypothetical protein; Provisional
Probab=91.54 E-value=18 Score=36.97 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=25.9
Q ss_pred eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCC
Q 013050 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP 80 (450)
Q Consensus 44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~ 80 (450)
.|.|+|..... ....+....+.+...|++.+.-..
T Consensus 336 ~DlH~HT~~sD--g~~sleemv~~A~~~Gl~~i~iTd 370 (570)
T PRK08609 336 GDLHMHTTWSD--GAFSIEEMVEACIAKGYEYMAITD 370 (570)
T ss_pred CCccccCCCCC--CCCCHHHHHHHHHHCCCCEEEEeC
Confidence 39999987542 223477788888999999987654
No 149
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=91.37 E-value=11 Score=34.10 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=81.4
Q ss_pred EeccceeeccccCCCCCC--cc----------cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCce
Q 013050 39 IMPGLIDVHAHLDDPGRT--EW----------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 106 (450)
Q Consensus 39 v~PG~iD~H~H~~~~~~~--~~----------~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (450)
-+..+||+|.|+...+.. .| -.+......+..+|+-..+-+=.+..+. +....+....+..+....+
T Consensus 5 ~~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~-D~~~e~~~v~~~~~~~g~~ 83 (279)
T COG3618 5 APQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPR-DNEKELAFVAELAERHGGI 83 (279)
T ss_pred ccccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCcc-chHHHHHHHHhhHHhhCce
Confidence 356789999999654311 01 1245556677888988776552122221 2222223333333322220
Q ss_pred EEEEeccccCCCccchHHHHHHHHcC---CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhh
Q 013050 107 DVGFWGGLVPENAYNASALEALLNAG---VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183 (450)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 183 (450)
++. +....++ ...++.+++ ..|+.... .. ...+....+.+++.++..+++|+.+.++.....
T Consensus 84 -vg~---id~~~~e---~~a~L~~~~~~~~~GvR~~l-~~--~p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~~q----- 148 (279)
T COG3618 84 -VGV---IDECRPE---FAAKLERARYPFFRGVRRNL-HV--VPDGLFEAPAWRANVERLAKLGLHFDLQVDPHQ----- 148 (279)
T ss_pred -EEE---EecCCch---HHHHHHHhcccccceeeehh-hc--CCccchhhHHHHHHHHHHHhcCCeEEEEeChhh-----
Confidence 111 1112222 233333344 44554422 11 111234447899999999999999999884322
Q ss_pred hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240 (450)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~ 240 (450)
+..++.++.. .+++++.+.|+..
T Consensus 149 ----------------------------l~~~i~l~~~------~Pd~~~VldH~G~ 171 (279)
T COG3618 149 ----------------------------LPDLIPLALK------APDVNFVLDHCGR 171 (279)
T ss_pred ----------------------------hHHHHHHHhh------CCCCCEEeccCCC
Confidence 3455555554 4588899999975
No 150
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.01 E-value=1.4 Score=37.60 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=35.6
Q ss_pred ceeeccccCCC---CCCcccchHHHHHHHHhCCceEEEeCCCCCCCC-CCcHHHHHHHHHHH
Q 013050 43 LIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKVDAA 100 (450)
Q Consensus 43 ~iD~H~H~~~~---~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~-~~~~~~~~~~~~~~ 100 (450)
+||.|+|.-.. +..+.+.....++.+...|||+++..++...+. ....+.+......+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~l 62 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQL 62 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHH
Confidence 58999998432 222334455668888999999999876333332 33344444444433
No 151
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=83.71 E-value=30 Score=32.95 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050 152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 231 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (450)
+...+...+..+.+.|+.+.+|+.+... ....+..++++..- ..
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~----------------------------~~~~v~~~LD~l~~--------~R 268 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNG----------------------------GASVVKNALDLLGT--------ER 268 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCC----------------------------ChHHHHHHHHhhCC--------cc
Confidence 4455666666677799999999955320 02234555553332 11
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCC
Q 013050 232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 311 (450)
Q Consensus 232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD 311 (450)
-=|..++. ...+.+..++..++.+.+ ||...... ....+++ ...+...++.|+++++.||
T Consensus 269 IGHG~~l~---~dp~L~~~~k~~nI~lEi--CP~SN~vl-----------~~v~d~r----nhp~~~~~~~~vP~vI~sD 328 (399)
T KOG1097|consen 269 IGHGYFLT---KDPELINLLKSRNIALEI--CPISNQVL-----------GLVSDLR----NHPVARLLAAGVPVVINSD 328 (399)
T ss_pred ccCceecc---CCHHHHHHHHhcCceEEE--ccchhhhe-----------ecccccc----ccHHHHHHhCCCCEEEeCC
Confidence 12223333 344667777777765544 87643221 1222222 2345677889999999999
Q ss_pred CC
Q 013050 312 HS 313 (450)
Q Consensus 312 ~~ 313 (450)
..
T Consensus 329 DP 330 (399)
T KOG1097|consen 329 DP 330 (399)
T ss_pred Cc
Confidence 53
No 152
>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....
Probab=82.91 E-value=0.85 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.7
Q ss_pred CcceeEEEeCCEEEEeccCCCC
Q 013050 1 MCKRAVEIKEGNIISIVSEEDW 22 (450)
Q Consensus 1 ~~~~~V~I~~g~I~~Ig~~~~~ 22 (450)
++++||.|+||||+.||...++
T Consensus 81 I~KADIGIkdG~I~gIGkAGNP 102 (121)
T PF00449_consen 81 IVKADIGIKDGRIVGIGKAGNP 102 (121)
T ss_dssp EEEEEEEEETTEEEEEE-EB-T
T ss_pred cEEeeEEeeCCEEEEEeccCCc
Confidence 4689999999999999987664
No 153
>PRK06361 hypothetical protein; Provisional
Probab=82.64 E-value=3.5 Score=35.95 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
+..+.+.|+.++++||.... ... . ............|++.++++.+.+.||+.++++
T Consensus 154 l~~a~~~gi~vv~~SDaH~~--~d~-----------------~-~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 154 ARIAREAGAPLVINTDTHAP--SDL-----------------I-TYEFARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred HHHHHHhCCcEEEECCCCCH--HHH-----------------H-HHHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 34455569999999997621 110 0 133344556788999999999999999999875
No 154
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=81.19 E-value=6.4 Score=35.02 Aligned_cols=67 Identities=13% Similarity=-0.009 Sum_probs=47.7
Q ss_pred HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC--C
Q 013050 296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ--V 373 (450)
Q Consensus 296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~--~ 373 (450)
+....+.|++++++||........ ........++..|++.++++.+.+.+|.+++.+ .
T Consensus 160 ~~~~~~~g~piiisSdAh~~~~l~--------------------~~~~~~~l~~~~Gl~~~~~~~~~~~~~~~i~~~~~~ 219 (237)
T PRK00912 160 LALARKYDFPLVLTSGAMSCYDLR--------------------SPREMIALAELFGMEEDEALKALSYYPESIIKKNRN 219 (237)
T ss_pred HHHHHhcCCCEEEeCCCCcccccC--------------------CHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHhhcc
Confidence 344555699999999965321110 134445667899999999999999999999998 4
Q ss_pred CCCccccCC
Q 013050 374 SKGAIAIGN 382 (450)
Q Consensus 374 ~~G~I~~G~ 382 (450)
+.+.|..|.
T Consensus 220 ~~~~~~~~~ 228 (237)
T PRK00912 220 RKNYVIEGV 228 (237)
T ss_pred CCCcccccE
Confidence 456666654
No 155
>PRK07945 hypothetical protein; Provisional
Probab=78.18 E-value=62 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.036 Sum_probs=27.1
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
..|.|+|..... ....+....+.+...|++.+.-.
T Consensus 97 ~~D~H~HT~~Sd--g~~~~ee~v~~Ai~~Gl~~i~~T 131 (335)
T PRK07945 97 RGDLHTHSDWSD--GGSPIEEMARTAAALGHEYCALT 131 (335)
T ss_pred hhhcccccCCCC--CCCCHHHHHHHHHHCCCCEEEEe
Confidence 479999987653 33558888999999999987654
No 156
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=69.27 E-value=64 Score=32.23 Aligned_cols=107 Identities=9% Similarity=0.031 Sum_probs=58.8
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ce--EEEEeccccCCCccchHHHHHHHHcCCcEEEEe
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YV--DVGFWGGLVPENAYNASALEALLNAGVLGLKSF 139 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 139 (450)
.-.+.+..+|+..++.+- . ......+....+...... .. .+.+............+..+++.+.|+..+...
T Consensus 101 ~fv~~a~~~Gidi~RIfd-~----lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 101 RFVEKSAENGMDVFRVFD-A----LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIK 175 (499)
T ss_pred HHHHHHHHcCCCEEEEEe-c----CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 345677888999887763 1 122334444444433221 22 222222111111122345566777888766541
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCChhhh
Q 013050 140 MCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEKGS 180 (450)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~~~ 180 (450)
+-.-...++...+++...++. ++++.+|.++....
T Consensus 176 ------DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 176 ------DMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred ------CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 111257888888888887664 69999999876553
No 157
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=67.67 E-value=96 Score=28.05 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=40.7
Q ss_pred hHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 122 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 122 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
.+.+....+.|..++..+...+.....+..+.+.+.++.+.++++|+.+.+|.
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 45778888899999988865543222234677888889999999999999997
No 158
>PRK01060 endonuclease IV; Provisional
Probab=64.85 E-value=1.1e+02 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=40.1
Q ss_pred chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCc---EEEec
Q 013050 121 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHA 174 (450)
Q Consensus 121 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~ 174 (450)
..+.++.+.+.|..++..+...+.....+..+.+.+.++.+.++++|+. +.+|.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~ 70 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHA 70 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEec
Confidence 4566778888999999988654322222245777888888999999998 88887
No 159
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=64.28 E-value=1e+02 Score=28.34 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHH----HHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCC
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK----VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 133 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (450)
.+.+....+.++..|+..++..+...+...-+.+..... .+....+.++-.+. .....+..+..+...+.|+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv----~~~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA----GYGTATAIAYAQAAEKAGA 95 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec----CCCHHHHHHHHHHHHHhCC
Confidence 345667778889999999987762223222233322222 22222333322222 1233455666677778999
Q ss_pred cEEEEecccCCCCCCCCCCHHHHHHHH-HHHHhcCCcEEEec
Q 013050 134 LGLKSFMCPSGINDFPMTNASHIKEGL-SVLARYKRPLLVHA 174 (450)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~g~~v~~H~ 174 (450)
.++-....+- ...+.+.+.+.+ +.++.-++|+.+.-
T Consensus 96 d~v~~~pP~y-----~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 96 DGILLLPPYL-----TEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CEEEECCCCC-----CCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 9987754321 123556666644 44566789988875
No 160
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=63.73 E-value=17 Score=32.89 Aligned_cols=108 Identities=21% Similarity=0.096 Sum_probs=58.4
Q ss_pred hHHHHHHHHhCCceEEEe-CCCCCCC---------CCCcHHHHHHHHHHHhcCCceEEEEeccccC------CCccchHH
Q 013050 61 FPSGTKAAAAGGITTLID-MPLNSDP---------STISTETLKLKVDAAEKRIYVDVGFWGGLVP------ENAYNASA 124 (450)
Q Consensus 61 ~~~~~~~~~~~GvT~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 124 (450)
...-...+.+.|+--++. .+ -... .......+....+.+..+ .+.+-.|..... ...+..+.
T Consensus 34 ~k~yIDfAa~~G~eYvlvD~G-W~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K-gVgi~lw~~~~~~~~~~~~~~~~~~~ 111 (273)
T PF10566_consen 34 QKRYIDFAAEMGIEYVLVDAG-WYGWEKDDDFDFTKPIPDFDLPELVDYAKEK-GVGIWLWYHSETGGNVANLEKQLDEA 111 (273)
T ss_dssp HHHHHHHHHHTT-SEEEEBTT-CCGS--TTT--TT-B-TT--HHHHHHHHHHT-T-EEEEEEECCHTTBHHHHHCCHHHH
T ss_pred HHHHHHHHHHcCCCEEEeccc-cccccccccccccccCCccCHHHHHHHHHHc-CCCEEEEEeCCcchhhHhHHHHHHHH
Confidence 333455677888877654 32 1100 001122333443433333 455555543333 12233667
Q ss_pred HHHHHHcCCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 125 LEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 125 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
+..+.+.|+.|+|. |+.. ..........++++.|.++++.|.+|-.
T Consensus 112 f~~~~~~Gv~GvKidF~~~-----d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 112 FKLYAKWGVKGVKIDFMDR-----DDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHHHHCTEEEEEEE--SS-----TSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred HHHHHHcCCCEEeeCcCCC-----CCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 78888899999998 3321 1133456778899999999999999984
No 161
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=62.60 E-value=1.1e+02 Score=29.39 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccccCCCc----cchHHHHHHHHcCCcEEEE-
Q 013050 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENA----YNASALEALLNAGVLGLKS- 138 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~- 138 (450)
...+..+|++.++.+- .. .....+....+...... .+..... ...... ...+..+++.+.|+.++..
T Consensus 104 v~ka~~nGidvfRiFD--Al---ND~RNl~~ai~a~kk~G~h~q~~i~--YT~sPvHt~e~yv~~akel~~~g~DSIciK 176 (472)
T COG5016 104 VEKAAENGIDVFRIFD--AL---NDVRNLKTAIKAAKKHGAHVQGTIS--YTTSPVHTLEYYVELAKELLEMGVDSICIK 176 (472)
T ss_pred HHHHHhcCCcEEEech--hc---cchhHHHHHHHHHHhcCceeEEEEE--eccCCcccHHHHHHHHHHHHHcCCCEEEee
Confidence 4466789999998872 11 22233333333333221 2222111 111112 2345667778888865543
Q ss_pred -ecccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhhh
Q 013050 139 -FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSE 181 (450)
Q Consensus 139 -~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~ 181 (450)
.. -..++....++++..++ .+++|.+|.+....+.
T Consensus 177 Dma--------GlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a 213 (472)
T COG5016 177 DMA--------GLLTPYEAYELVKAIKKELPVPVELHTHATSGMA 213 (472)
T ss_pred ccc--------ccCChHHHHHHHHHHHHhcCCeeEEecccccchH
Confidence 22 24677777777777654 6999999997766544
No 162
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=62.25 E-value=88 Score=32.11 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=58.5
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc-eEEE--EeccccCCCc-cchHHHHHHHHcCCcEEEE
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVG--FWGGLVPENA-YNASALEALLNAGVLGLKS 138 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~ 138 (450)
.-.+.+..+|+..++.+- . ......+....+....... +... +... ...+. ...+..+++.+.|+..+..
T Consensus 100 ~~v~~a~~~Gidv~Rifd--~---lnd~~n~~~~i~~~k~~G~~~~~~i~yt~s-p~~t~e~~~~~ak~l~~~Gad~I~I 173 (596)
T PRK14042 100 AFVKLAVNNGVDVFRVFD--A---LNDARNLKVAIDAIKSHKKHAQGAICYTTS-PVHTLDNFLELGKKLAEMGCDSIAI 173 (596)
T ss_pred HHHHHHHHcCCCEEEEcc--c---CcchHHHHHHHHHHHHcCCEEEEEEEecCC-CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 356678899999998873 1 1223333333333332222 2221 2111 11111 2234556667788876654
Q ss_pred ecccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhhh
Q 013050 139 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSE 181 (450)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~ 181 (450)
. +-.-..++....+++...++ .++++.+|.++.....
T Consensus 174 k------DtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla 211 (596)
T PRK14042 174 K------DMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLA 211 (596)
T ss_pred C------CcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcH
Confidence 2 11124677888887777654 5899999998766533
No 163
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=60.55 E-value=1.4e+02 Score=27.64 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=61.4
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEeccccCCCccchHHHHHHHHcC
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 132 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (450)
..+.+....+.++.+|+..++..+...+...-+.+......+ ....+.++-.+. .....+..+..+...+.|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv----~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA----GGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec----CCCHHHHHHHHHHHHHhC
Confidence 334566778888999999998876333333333333333222 222333322222 223345566667777789
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHHH-HHHhcCCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGLS-VLARYKRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~~g~~v~~H~ 174 (450)
+.++-....+- ...+.+.+.+.++ .++..+++|.+.-
T Consensus 102 adav~~~pP~y-----~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 102 ADGILLLPPYL-----TEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCEEEECCCCC-----CCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 99987654321 1235566666444 4666789988875
No 164
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=59.49 E-value=16 Score=34.59 Aligned_cols=56 Identities=14% Similarity=-0.015 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHcCCcEEEEecc-cCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 119 AYNASALEALLNAGVLGLKSFMC-PSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 119 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
....+.+...++.|+..+-.... +.........+.+.+++.++.||++|+++.+-.
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 34566777778888666644321 211111124778889999999999999766654
No 165
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=59.01 E-value=53 Score=29.61 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=43.8
Q ss_pred hHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHH---HHHHHHHHHhc-CCcEEEecCChhhhhhhhhh
Q 013050 122 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASH---IKEGLSVLARY-KRPLLVHAEMEKGSERHVKL 186 (450)
Q Consensus 122 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~ 186 (450)
.+..+++.+.|+.-+.........+..+....++ +..+++.+++. +.++.+|..++..++.+++.
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 4556777888998887742222111112222334 67777888776 99999999999998888876
No 166
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=58.18 E-value=72 Score=25.02 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=36.1
Q ss_pred CCCcEEecCCCEEeccceeeccccCCCCCC-----------cccchHHHHHHHHhCCceEEEeC
Q 013050 27 KTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----------EWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 27 ~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-----------~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
+.+..+|+. -.|.|-+||.|.|...-++. ..++.......+...|||.+..-
T Consensus 5 p~~~~fdld-ytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~AS 67 (144)
T KOG4549|consen 5 PEAMQFDLD-YTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHAS 67 (144)
T ss_pred CceeEEecc-ceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEec
Confidence 456677774 67999999999998542221 11345556667788999988755
No 167
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.08 E-value=1.6e+02 Score=29.25 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=58.5
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc-eEEEEeccccCC-Cc-cchHHHHHHHHcCCcEEEEec
Q 013050 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGGLVPE-NA-YNASALEALLNAGVLGLKSFM 140 (450)
Q Consensus 64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~ 140 (450)
..+.+..+|+..++.+- . ......+....+....... +.........+. +. -..+..+++.+.|+..+...
T Consensus 110 fv~~a~~~Gidi~Rifd--~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik- 183 (468)
T PRK12581 110 FISLSAQNGIDVFRIFD--A---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK- 183 (468)
T ss_pred HHHHHHHCCCCEEEEcc--c---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC-
Confidence 36677889999998773 1 1233444444444433222 212111111111 11 13455667777888766552
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhh
Q 013050 141 CPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 179 (450)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 179 (450)
+-.-...++...++++..++ .++++.+|.++...
T Consensus 184 -----DtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 184 -----DMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred -----CCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 11125678888888877665 46899999977655
No 168
>PRK09248 putative hydrolase; Validated
Probab=55.83 E-value=1.5e+02 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=27.3
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
++|.|+|..... .....+....+.+.+.|++.+.-.
T Consensus 4 ~~D~H~HT~~s~-~~~~~~~e~v~~A~~~G~~~i~iT 39 (246)
T PRK09248 4 PVDTHTHTIASG-HAYSTLHENAAEAKQKGLKLFAIT 39 (246)
T ss_pred ceEeCcCCCCCC-CCCCCHHHHHHHHHHCCCCEEEEC
Confidence 689999987642 223347788889999999998765
No 169
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.23 E-value=2e+02 Score=26.14 Aligned_cols=55 Identities=22% Similarity=0.129 Sum_probs=38.8
Q ss_pred cchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCc---EEEec
Q 013050 120 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHA 174 (450)
Q Consensus 120 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~ 174 (450)
...+.++++.+.|+.++..|...+..-..+..+.+...+..+..+++++. +.+|+
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Ha 69 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHA 69 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccC
Confidence 34567888899999999999876543223344566666666667788776 78887
No 170
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=50.05 E-value=2.1e+02 Score=26.37 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEeccccCCCccchHHHHHHHHcC
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 132 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (450)
..+.+....+.++.+|+..+...+...+...-+.+......+ ....+.++-.+. + ....+..+..+...+.|
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~--~~t~~ai~~a~~a~~~G 99 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--G--GNTSDAIEIARLAEKAG 99 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--C--ccHHHHHHHHHHHHHhC
Confidence 345577778888999999998775333332333333222222 222333322222 1 22445566667777899
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHHHH-HHhcCCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARYKRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~~H~ 174 (450)
+.++-....+- ...+.+.+.+.++. ++.-++++.+.-
T Consensus 100 adav~~~pP~y-----~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 100 ADGYLLLPPYL-----INGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CCEEEECCCCC-----CCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 99887644321 12345665554444 566678888864
No 171
>PRK08444 hypothetical protein; Provisional
Probab=49.92 E-value=1.2e+02 Score=29.00 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=64.5
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEecccc------CCCccchHHHHHHHHc
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLV------PENAYNASALEALLNA 131 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 131 (450)
+.+....+.+...|+|.+.-.+ +..|.. ..+.+....+.+.... .+.+..+.... ..+....+.+..|.+.
T Consensus 83 eeI~~~a~~a~~~G~~ei~iv~-G~~p~~-~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeA 160 (353)
T PRK08444 83 EEILEIVKNSVKRGIKEVHIVS-AHNPNY-GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEY 160 (353)
T ss_pred HHHHHHHHHHHHCCCCEEEEec-cCCCCC-CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4566677788899999998875 444433 4555555555555432 25554432211 1223345778888888
Q ss_pred CCcEEEEecccCC------CCCCC-CCCHHHHHHHHHHHHhcCCcEE
Q 013050 132 GVLGLKSFMCPSG------INDFP-MTNASHIKEGLSVLARYKRPLL 171 (450)
Q Consensus 132 g~~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~a~~~g~~v~ 171 (450)
|...+..- ..+- ..-.| ....+...++++.|++.|+++.
T Consensus 161 Gl~~~~g~-~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~ 206 (353)
T PRK08444 161 GVDSMPGG-GAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSN 206 (353)
T ss_pred CcccCCCC-CchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 87654320 0000 00001 3566888899999999999853
No 172
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=49.83 E-value=24 Score=29.24 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=25.2
Q ss_pred eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
||.|+|...........+......+.+.|++.+.-.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iT 36 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAIT 36 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEc
Confidence 799999876633333467788889999999987654
No 173
>PLN02417 dihydrodipicolinate synthase
Probab=49.72 E-value=2.1e+02 Score=26.19 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=60.0
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC-CCccchHHHHHHHHcCCcE
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 135 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 135 (450)
.++.+....+.++..|+..++..+...+...-+.+......+.......-++....++.. ...+..+..+...+.|+.+
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gada 99 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHA 99 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCE
Confidence 345567777888999999998775222332333333333322221111111112222222 3334556666677789998
Q ss_pred EEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 136 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
+-....+- ...+.+.+.+.++...+.. |+.++-
T Consensus 100 v~~~~P~y-----~~~~~~~i~~~f~~va~~~-pi~lYn 132 (280)
T PLN02417 100 ALHINPYY-----GKTSQEGLIKHFETVLDMG-PTIIYN 132 (280)
T ss_pred EEEcCCcc-----CCCCHHHHHHHHHHHHhhC-CEEEEE
Confidence 87754321 1245677777666654455 887764
No 174
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=49.50 E-value=1.8e+02 Score=25.39 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred ccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCC
Q 013050 114 LVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 192 (450)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 192 (450)
+...+.+....+.+..+ .|+..+.. .++++..+.+. +.-++||++-+-++...-.+++.+-.-.+
T Consensus 21 LnNFd~~~V~~i~~AA~~ggAt~vDI-----------Aadp~LV~~~~---~~s~lPICVSaVep~~f~~aV~AGAdliE 86 (242)
T PF04481_consen 21 LNNFDAESVAAIVKAAEIGGATFVDI-----------AADPELVKLAK---SLSNLPICVSAVEPELFVAAVKAGADLIE 86 (242)
T ss_pred ccccCHHHHHHHHHHHHccCCceEEe-----------cCCHHHHHHHH---HhCCCCeEeecCCHHHHHHHHHhCCCEEE
Confidence 34444444445555555 44544433 34555444322 34589999999888888888888776666
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEE
Q 013050 193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSIT 259 (450)
Q Consensus 193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~ 259 (450)
...|..+...-..+. .++++++.+++|.--|..-.-+.+=|.-..++..++..++.+.|+.+.
T Consensus 87 IGNfDsFY~qGr~f~----a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiI 149 (242)
T PF04481_consen 87 IGNFDSFYAQGRRFS----AEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADII 149 (242)
T ss_pred ecchHHHHhcCCeec----HHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEE
Confidence 666666553323222 267888888887777744444555565554477777777888887654
No 175
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=47.49 E-value=2.2e+02 Score=25.93 Aligned_cols=113 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC-CCccchHHHHHHHHcCCcE
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLG 135 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 135 (450)
.++.+....+.++..|+..+...+...+...-+.+......+.......-++....++.. ...+..+..+...+.|+.+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~ 98 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADA 98 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCE
Confidence 344566777888999999998775222322233333333333222111111122222222 2334556666777789998
Q ss_pred EEEecccCCCCCCCCCCHHHHHHHH-HHHHhcCCcEEEec
Q 013050 136 LKSFMCPSGINDFPMTNASHIKEGL-SVLARYKRPLLVHA 174 (450)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~g~~v~~H~ 174 (450)
+-....+. ...+.+.+.+.+ +.++..++++.++-
T Consensus 99 v~~~~P~~-----~~~~~~~l~~~~~~ia~~~~~pi~lYn 133 (284)
T cd00950 99 ALVVTPYY-----NKPSQEGLYAHFKAIAEATDLPVILYN 133 (284)
T ss_pred EEEccccc-----CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87754221 123445555544 44666789999885
No 176
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.55 E-value=1.3e+02 Score=28.10 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecCC
Q 013050 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEM 176 (450)
Q Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~ 176 (450)
+.++.+++.|+.++...-.. .+.+.++.++-+++++.+.+ .+++|.+|+..
T Consensus 33 ~lv~~li~~Gv~Gi~v~Gst---GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~ 86 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTF---GECATLTWEEKQAFVATVVETVAGRVPVFVGATT 86 (309)
T ss_pred HHHHHHHHcCCCEEEECccc---ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 34566677899888763222 34467888887777776543 35788998843
No 177
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=40.79 E-value=3.5e+02 Score=30.52 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=57.7
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC---CceEEEEeccccCCCc--c----chHHHHHHHHcCCcE
Q 013050 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDVGFWGGLVPENA--Y----NASALEALLNAGVLG 135 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~g~~~ 135 (450)
.+.+.++|+..++.+- ... ....+....+..... ....+.+.+.+.+... . ..+..+++.+.|+..
T Consensus 631 ~~~~~~~GidifrifD--~lN---~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~ 705 (1143)
T TIGR01235 631 VKQAAQGGIDIFRVFD--SLN---WVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHI 705 (1143)
T ss_pred HHHHHHcCCCEEEECc--cCc---CHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4466789999998873 222 233333333333222 2223333333333221 1 234556677788876
Q ss_pred EEEecccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhh
Q 013050 136 LKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 179 (450)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 179 (450)
+..- +.. -...+....++++..++ .++++.+|.++...
T Consensus 706 I~ik-Dt~-----Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~G 744 (1143)
T TIGR01235 706 LGIK-DMA-----GLLKPAAAKLLIKALREKTDLPIHFHTHDTSG 744 (1143)
T ss_pred EEEC-CCc-----CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 6441 111 24677778877777654 58999999987765
No 178
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.34 E-value=3.1e+02 Score=25.51 Aligned_cols=110 Identities=15% Similarity=0.030 Sum_probs=60.6
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEeccccCCCccchHHHHHHHHcC
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAG 132 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (450)
..+.+......++.+|+..++..+...+...-+.+......+ ....+.++-++.. .....+..+..+...+.|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~---~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT---TLNTRDTIARTRALLDLG 103 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec---cCCHHHHHHHHHHHHHhC
Confidence 334567778888999999998775222222222333222222 2222322222221 123344556666777789
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHHHH-HHhc-CCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGLSV-LARY-KRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-a~~~-g~~v~~H~ 174 (450)
+.++-....+- ...+.+.+.+.++. ++.- ++||.+.-
T Consensus 104 ad~vlv~~P~y-----~~~~~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 104 ADGTMLGRPMW-----LPLDVDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred CCEEEECCCcC-----CCCCHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 99988765321 12345666665544 5666 58998875
No 179
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=39.70 E-value=3e+02 Score=25.22 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=58.8
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEecccc-CCCccchHHHHHHHHcC
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLV-PENAYNASALEALLNAG 132 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 132 (450)
++.+....+.++..|+..+...+...+...-+.+......+ ....+.++- .++. ....+..+..+...+.|
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi----~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVI----AGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEE----eecCCchHHHHHHHHHHHHHcC
Confidence 34566777888999999998765222222222322222222 222222221 2222 23344556666777789
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHH-HHHHhcCCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGL-SVLARYKRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~g~~v~~H~ 174 (450)
+.++-....+- ...+.+.+.+.+ +.++.-++++.++-
T Consensus 97 ~d~v~~~pP~~-----~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 97 ADGALVVTPYY-----NKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred CCEEEECCCcC-----CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99888754321 123455555544 44666789988875
No 180
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.48 E-value=3e+02 Score=27.27 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=56.9
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CceEEEEeccccC-CC-ccchHHHHHHHHcCCcEEEEe
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVP-EN-AYNASALEALLNAGVLGLKSF 139 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~ 139 (450)
.-.+.+..+|+..++-+- ... ....+....+.+... ..+.........+ .+ ....+..+++.+.|+..+...
T Consensus 100 ~~v~~A~~~Gvd~irif~-~ln----d~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~ 174 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFD-ALN----DVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK 174 (448)
T ss_pred HHHHHHHHCCCCEEEEEE-ecC----cHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 345677889999887763 111 112333344433322 2222222211111 11 122455566777888766542
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhh
Q 013050 140 MCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 179 (450)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 179 (450)
+-.-...+....+++...++ .++++.+|.++...
T Consensus 175 ------Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~G 209 (448)
T PRK12331 175 ------DMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSG 209 (448)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 11124677888887777654 57999999977654
No 181
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.89 E-value=2e+02 Score=26.29 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHH----HHHhcCCceEEEEeccccCCCccchHHHHHHHHcCC
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV----DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 133 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (450)
.+.+....+.++.+|+..++..+...+...-+.+...... +....+.++-.+.. .....+..+..+...+.|+
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~---~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG---ANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE---SSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc---chhHHHHHHHHHHHhhcCc
Confidence 3456677788889999999887622232222222222222 22223333322221 1233445666677778999
Q ss_pred cEEEEecccCCCCCCCCCCHHHHHH-HHHHHHhcCCcEEEecC
Q 013050 134 LGLKSFMCPSGINDFPMTNASHIKE-GLSVLARYKRPLLVHAE 175 (450)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~a~~~g~~v~~H~~ 175 (450)
.++-....+- ...+.+.+.+ ..+.++.-++++.++-.
T Consensus 98 d~v~v~~P~~-----~~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 98 DAVLVIPPYY-----FKPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp SEEEEEESTS-----SSCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred eEEEEecccc-----ccchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 9887754322 1245555555 44456777899998863
No 182
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=38.40 E-value=3.2e+02 Score=25.09 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecC
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 175 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 175 (450)
.++.+.+.|+.++...-.. .+.+.++.++-.++++.+.+ .+++|..++.
T Consensus 26 l~~~l~~~Gv~gi~v~Gst---GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 26 HVEWLLSYGAAALFAAGGT---GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred HHHHHHHcCCCEEEECcCC---cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 3455566788777653222 33456777776666665443 3577788774
No 183
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=37.95 E-value=2.5e+02 Score=26.84 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050 153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232 (450)
Q Consensus 153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (450)
.+.++.++..+.+.|++|.+.....+. ....+.+.+++++. +..
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~NaGg~np-----------------------------~~~a~~v~eia~e~-------Gl~ 100 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITNAGGLNP-----------------------------AGCADIVREIAREL-------GLS 100 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCH-----------------------------HHHHHHHHHHHHhc-------CCC
Confidence 357888999999999999998743221 22567778888876 655
Q ss_pred EEEEecCChhHHHHHHHHHHhCC
Q 013050 233 LHIVHLSDASSSLDLLMEAKTNG 255 (450)
Q Consensus 233 ~~~~h~~~~~~~~~~~~~~~~~g 255 (450)
+.+..+... ...+.+.+..+.+
T Consensus 101 lkvA~V~gD-d~~~~v~~~~~~g 122 (362)
T PF07287_consen 101 LKVAVVYGD-DLKDEVKELLAEG 122 (362)
T ss_pred eeEEEEECc-cchHhHHHHHhCC
Confidence 555555444 5566666655444
No 184
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=37.87 E-value=1.8e+02 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050 150 MTNASHIKEGLSVLARYKRPLLVHAEM 176 (450)
Q Consensus 150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~ 176 (450)
..+.+.+.+..+...+...||.+|+..
T Consensus 69 ~~~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 69 AITEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp T--HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 356777777777777788899999954
No 185
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.83 E-value=4.3e+02 Score=27.31 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=57.3
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc-e--EEEEeccccCCCccchHHHHHHHHcCCcEEEEec
Q 013050 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-V--DVGFWGGLVPENAYNASALEALLNAGVLGLKSFM 140 (450)
Q Consensus 64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 140 (450)
-.+.+..+|+..++-+- . ......+....+.+..... + .+.+............+..+++.+.|+..+...
T Consensus 102 ~v~~a~~~Gid~~rifd-~----lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~- 175 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-A----MNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK- 175 (593)
T ss_pred HHHHHHhcCCCEEEEee-e----CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 35677889999888773 1 1223344444444433222 1 122211110111122344556667888766542
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhh
Q 013050 141 CPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGS 180 (450)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~ 180 (450)
+-.-...++.+.++++..++ .++++.+|.++....
T Consensus 176 -----Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 176 -----DMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGL 211 (593)
T ss_pred -----CCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCch
Confidence 11124677888887777654 589999999876653
No 186
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.80 E-value=3.1e+02 Score=24.86 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=59.9
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHH----hcCCceEEEEeccccCCCccchHHHHHHHHcC
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA----EKRIYVDVGFWGGLVPENAYNASALEALLNAG 132 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (450)
.++.+....+.++..|+..+...+...+...-+.+......+.. ..+.++-.+. ......+..+..+...+.|
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv---~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV---GANSTREAIELARHAEEAG 92 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec---CCccHHHHHHHHHHHHHcC
Confidence 44557777888899999999877522333333333333332222 2222222221 1122234455566667789
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHH-HHHHHhcCCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEG-LSVLARYKRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~a~~~g~~v~~H~ 174 (450)
+.++-....+- ...+.+.+.+. .+.++.-++|+.++-
T Consensus 93 ad~v~v~pP~y-----~~~~~~~~~~~~~~ia~~~~~pi~iYn 130 (281)
T cd00408 93 ADGVLVVPPYY-----NKPSQEGIVAHFKAVADASDLPVILYN 130 (281)
T ss_pred CCEEEECCCcC-----CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99988754321 12345555554 445666789999885
No 187
>PRK08185 hypothetical protein; Provisional
Probab=37.15 E-value=3.3e+02 Score=24.97 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCcEEEec
Q 013050 158 EGLSVLARYKRPLLVHA 174 (450)
Q Consensus 158 ~~~~~a~~~g~~v~~H~ 174 (450)
-+...|++...||.+|.
T Consensus 59 ~~~~~a~~~~vPV~lHL 75 (283)
T PRK08185 59 YVRERAKRSPVPFVIHL 75 (283)
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 34445666677777776
No 188
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.91 E-value=2.9e+02 Score=24.21 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=24.1
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcc
Q 013050 230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 265 (450)
Q Consensus 230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 265 (450)
|..+...|........+.++.+++.|.......+|.
T Consensus 81 gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~ 116 (220)
T PRK08883 81 GASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPA 116 (220)
T ss_pred CCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCC
Confidence 555556777643245577888888888777766664
No 189
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=36.27 E-value=3.5e+02 Score=24.89 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=60.3
Q ss_pred CcccchHHHHHHHHh-CCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEecccc-CCCccchHHHHHHH
Q 013050 56 TEWEGFPSGTKAAAA-GGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLV-PENAYNASALEALL 129 (450)
Q Consensus 56 ~~~~~~~~~~~~~~~-~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (450)
...+.+....+.++. .|+..++..+...+...-+.+......+ ....+.++ ..+.. ....+..+..+...
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~v----iagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKL----IAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCE----EecCCCCCHHHHHHHHHHHH
Confidence 344557777888898 9999998776333322222333222222 22222221 11222 22334455666777
Q ss_pred HcCCcEEEEecccCCCCCCCCCCHHHHHH-HHHHHHhcCCcEEEec
Q 013050 130 NAGVLGLKSFMCPSGINDFPMTNASHIKE-GLSVLARYKRPLLVHA 174 (450)
Q Consensus 130 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~a~~~g~~v~~H~ 174 (450)
+.|+.++.....+- ...+.+.+.+ ..+.++.-++||.++-
T Consensus 97 ~~Gad~v~v~~P~y-----~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 97 ELGYDAISAVTPFY-----YPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred HcCCCEEEEeCCcC-----CCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 89999998765331 1234455555 4444666788998875
No 190
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=36.17 E-value=1.4e+02 Score=27.15 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEec
Q 013050 152 NASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 152 ~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
+.+.+.+++..++++|+.|+.|.
T Consensus 166 d~~~y~dav~r~rkrgIkvc~Hi 188 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHL 188 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEE
Confidence 45677788888899999999998
No 191
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=35.28 E-value=2.9e+02 Score=23.79 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=54.6
Q ss_pred hHHHHHHHHcCCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050 122 ASALEALLNAGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 200 (450)
Q Consensus 122 ~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.++++.+.+.|+..++.= +...-.. .-...++.++++. +.-++++.+|.--.+.
T Consensus 15 ~~~i~~l~~~g~d~lHiDiMDg~fvp-n~~~g~~~i~~i~---~~~~~~~DvHLMv~~P--------------------- 69 (201)
T PF00834_consen 15 EEEIKRLEEAGADWLHIDIMDGHFVP-NLTFGPDIIKAIR---KITDLPLDVHLMVENP--------------------- 69 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEEEBSSSSS-SB-B-HHHHHHHH---TTSSSEEEEEEESSSG---------------------
T ss_pred HHHHHHHHHcCCCEEEEeecccccCC-cccCCHHHHHHHh---hcCCCcEEEEeeeccH---------------------
Confidence 466777888899888762 3211100 0123455544432 2367899999832111
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcch
Q 013050 201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 266 (450)
Q Consensus 201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 266 (450)
.+.++...++ +...-..|........+.++.+++.|..+...+.|..
T Consensus 70 ------------~~~i~~~~~~-------g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 70 ------------ERYIEEFAEA-------GADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp ------------GGHHHHHHHH-------T-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS
T ss_pred ------------HHHHHHHHhc-------CCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC
Confidence 1122222222 4334456666443667888889989988877777754
No 192
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.56 E-value=2.2e+02 Score=26.09 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCC
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 176 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 176 (450)
.++.+.+.|+.++-..... .+.+.++.++-.++++.+.+. +.+|.+|+..
T Consensus 27 ~i~~l~~~Gv~gi~~~Gs~---GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 79 (292)
T PRK03170 27 LVDYLIANGTDGLVVVGTT---GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS 79 (292)
T ss_pred HHHHHHHcCCCEEEECCcC---CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC
Confidence 4556677888888753221 344567888877777765543 5788888843
No 193
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=34.19 E-value=5.5e+02 Score=26.57 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhC
Q 013050 293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAG 371 (450)
Q Consensus 293 ~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg 371 (450)
..++..+++.|+.+++.||........ ...+...+.. ....++|..++.++ ..|+.+..+
T Consensus 503 ~HP~~~~~~~Gl~VSLsTDDPl~f~~T------------------~epL~EEY~~aa~~~~Ls~~Dl~eL-arNSV~~S~ 563 (611)
T TIGR01429 503 KNPLPEYLHKGLNVSLSTDDPLQFHYT------------------KEALMEEYAIAAQVWKLSTCDMCEL-ARNSVLQSG 563 (611)
T ss_pred hChHHHHHHCCCeEEEcCCCchhhCCC------------------CCcHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHhC
Confidence 334677899999999999954321100 0112222333 34568999887765 456666666
Q ss_pred C
Q 013050 372 Q 372 (450)
Q Consensus 372 ~ 372 (450)
.
T Consensus 564 ~ 564 (611)
T TIGR01429 564 F 564 (611)
T ss_pred C
Confidence 5
No 194
>PLN02417 dihydrodipicolinate synthase
Probab=33.76 E-value=2.4e+02 Score=25.71 Aligned_cols=50 Identities=8% Similarity=-0.066 Sum_probs=33.1
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecCC
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEM 176 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~ 176 (450)
.++.+.+.|+.++...-.. .+.+.++.++-+++++.+.+ .+++|..++..
T Consensus 27 ~i~~l~~~Gv~Gi~~~Gst---GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 27 LVNMQIENGAEGLIVGGTT---GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred HHHHHHHcCCCEEEECccC---cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 4555667888888763222 34467788888887776554 34788888843
No 195
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=33.55 E-value=2.4e+02 Score=25.82 Aligned_cols=51 Identities=8% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCC
Q 013050 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 176 (450)
Q Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 176 (450)
+.++.+++.|+.++...-.. .+.+.++.++-+++++.+.+. +++|..++..
T Consensus 23 ~~i~~l~~~Gv~Gi~~~Gst---GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~ 76 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTT---GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS 76 (285)
T ss_pred HHHHHHHHcCCCEEEECccC---cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 34556667898888753211 344677888877777765543 5788888843
No 196
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=32.67 E-value=63 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=17.3
Q ss_pred EEEEEECCeEEEecCcccCCCCC
Q 013050 422 VLATISRGNLVYKEGNHAPAACG 444 (450)
Q Consensus 422 v~~v~v~G~~v~~~g~~~~~~~g 444 (450)
=.+|+||||+|.+-|-+-+...|
T Consensus 29 DvWVFIn~kLv~DlGG~H~~~~~ 51 (90)
T TIGR02148 29 DVWVFINNKLVVDIGGQHPAVPG 51 (90)
T ss_pred eEEEEECCEEEEEccCcCCCccc
Confidence 35899999999998766554434
No 197
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.08 E-value=4.1e+02 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=13.0
Q ss_pred CHHHHHHH-HHHHHhcCCcEEEec
Q 013050 152 NASHIKEG-LSVLARYKRPLLVHA 174 (450)
Q Consensus 152 ~~~~l~~~-~~~a~~~g~~v~~H~ 174 (450)
..+.+..+ ...|++...||.+|.
T Consensus 58 g~~~~~~~~~~~A~~~~VPV~lHL 81 (284)
T PRK09195 58 GTEYLLAIVSAAAKQYHHPLALHL 81 (284)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC
Confidence 33344443 335666777777777
No 198
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.02 E-value=4e+02 Score=24.31 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=60.5
Q ss_pred CcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcE
Q 013050 56 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 135 (450)
Q Consensus 56 ~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 135 (450)
..++.+....+.++..|+..++..+...+...-+.+......+....... .+ ..+-......+..+..+...+.|+.+
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~v-i~gvg~~~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KV-IFQVGSLNLEESIELARAAKSFGIYA 94 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CE-EEEeCcCCHHHHHHHHHHHHHcCCCE
Confidence 34455677788889999999988762223222233333332222211111 11 11111122334456666677799998
Q ss_pred EEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 136 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
+-....+- .+..+.+.+.+-+....+ ++++.++-
T Consensus 95 v~v~~P~y----~~~~~~~~i~~yf~~v~~-~lpv~iYn 128 (279)
T cd00953 95 IASLPPYY----FPGIPEEWLIKYFTDISS-PYPTFIYN 128 (279)
T ss_pred EEEeCCcC----CCCCCHHHHHHHHHHHHh-cCCEEEEe
Confidence 88754321 011356777776666555 89999874
No 199
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=32.01 E-value=4.1e+02 Score=24.46 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecC
Q 013050 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 175 (450)
Q Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 175 (450)
+.++.+++.|+.++...-.. .+.+.++.++-+++++.+.+ .+++|..|+.
T Consensus 30 ~li~~l~~~Gv~gi~v~Gst---GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGT---GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred HHHHHHHhcCCCEEEECCCC---cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 34556667788887653222 33456777777777766544 3467888874
No 200
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=31.97 E-value=3.3e+02 Score=27.10 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CceEEEEeccccC-CCc-cchHHHHHHHHcCCcEEEEecc
Q 013050 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVP-ENA-YNASALEALLNAGVLGLKSFMC 141 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~ 141 (450)
.+.++.+|+..++-+- .. .....+....+.+... ..+.........+ .+. ...+..+++.+.|+..+...
T Consensus 101 v~~A~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~-- 173 (467)
T PRK14041 101 VKKVAEYGLDIIRIFD-AL----NDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIK-- 173 (467)
T ss_pred HHHHHHCCcCEEEEEE-eC----CHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC--
Confidence 5677889999887763 11 1233444444433322 2233222111111 111 12345556677888766541
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhh
Q 013050 142 PSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 179 (450)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 179 (450)
+-.-...+....+++...++ .++++.+|.++...
T Consensus 174 ----Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~G 208 (467)
T PRK14041 174 ----DMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTG 208 (467)
T ss_pred ----CccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCC
Confidence 11124677888887777654 58999999987665
No 201
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=31.65 E-value=2.8e+02 Score=25.53 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred hHHHHHHHHcC-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050 122 ASALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 197 (450)
Q Consensus 122 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.+.++.+++.| +.++...-.. .+.+.++.++-.++++.+.+. +++|..++
T Consensus 24 ~~~i~~~i~~G~v~gi~~~Gst---GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv----------------------- 77 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGST---GENFMLSTEEKKEIFRIAKDEAKDQIALIAQV----------------------- 77 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcc---cccccCCHHHHHHHHHHHHHHhCCCCcEEEec-----------------------
Q ss_pred cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050 198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 274 (450)
Q Consensus 198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 274 (450)
.+.+.. +.++..+.+++.|+.......|.+...+.+.+
T Consensus 78 --------------------------------------~~~~t~-~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i 115 (290)
T TIGR00683 78 --------------------------------------GSVNLK-EAVELGKYATELGYDCLSAVTPFYYKFSFPEI 115 (290)
T ss_pred --------------------------------------CCCCHH-HHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHH
No 202
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=31.51 E-value=3.7e+02 Score=25.75 Aligned_cols=107 Identities=10% Similarity=0.087 Sum_probs=65.1
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEE
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 138 (450)
+.+....+.+...|++.+.-.+ +..+.....+.+....+.+....+ .+... ...-..+.++.+.+.|+.++..
T Consensus 107 eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~p-~i~i~-----~g~lt~e~l~~Lk~aGv~r~~i 179 (371)
T PRK09240 107 EEIEREMAAIKKLGFEHILLLT-GEHEAKVGVDYIRRALPIAREYFS-SVSIE-----VQPLSEEEYAELVELGLDGVTV 179 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCC-Cceec-----cCCCCHHHHHHHHHcCCCEEEE
Confidence 4466666777889999997664 444444556666665555543211 11111 1223466789999999998877
Q ss_pred ecccCC------CC-CCCCCCHHHHHHHHHHHHhcCCc-EEE
Q 013050 139 FMCPSG------IN-DFPMTNASHIKEGLSVLARYKRP-LLV 172 (450)
Q Consensus 139 ~~~~~~------~~-~~~~~~~~~l~~~~~~a~~~g~~-v~~ 172 (450)
...... .. ..+..+.+...+.++.|++.|+. |.+
T Consensus 180 ~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~ 221 (371)
T PRK09240 180 YQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGL 221 (371)
T ss_pred EEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeece
Confidence 543321 11 01234677888889999999986 544
No 203
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.35 E-value=4e+02 Score=24.30 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
+.++.+.+.|+.++...-.. .+.+.++.++-+++++.+.+..-+|..++.
T Consensus 24 ~li~~l~~~Gv~Gl~~~Gst---GE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg 73 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTT---GLGPSLSFQEKLELLKAYSDITDKVIFQVG 73 (279)
T ss_pred HHHHHHHHcCCcEEEEcccC---CCcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence 34556677899888764222 344678888888888776655445777774
No 204
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.34 E-value=48 Score=19.83 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.2
Q ss_pred eEEEeCCEEEEeccC
Q 013050 5 AVEIKEGNIISIVSE 19 (450)
Q Consensus 5 ~V~I~~g~I~~Ig~~ 19 (450)
.|.|+||+|+.|...
T Consensus 19 ~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 19 TIIIQDGRVVQIEKT 33 (38)
T ss_pred EEEEECCEEEEEEhh
Confidence 367899999999764
No 205
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.80 E-value=74 Score=21.44 Aligned_cols=35 Identities=20% Similarity=0.048 Sum_probs=23.0
Q ss_pred eeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 45 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 45 D~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
|.|+|................+.+.+.|+..+.-.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iT 35 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAIT 35 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEe
Confidence 67888765533333446677788888888877543
No 206
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=29.78 E-value=3.2e+02 Score=25.04 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=34.8
Q ss_pred CCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050 117 ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 176 (450)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 176 (450)
......+.+++++.+--.-+...|.- ..+.+.+..++++|.+++.+|-+=.+.
T Consensus 131 ~~p~IKE~vR~~I~~A~kVIAIVMD~-------FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQAQKVIAIVMDV-------FTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCCCHHHHHHHHHHHhcceeEEEeec-------cccHHHHHHHHHHHHhcCCcEEEEech
Confidence 33445667777776433333333311 467889999999998999998887744
No 207
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=29.68 E-value=5e+02 Score=26.78 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=58.3
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCceEEEEeccccC-CC-ccchHHHHHHHHcCCcEEEEec
Q 013050 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-EN-AYNASALEALLNAGVLGLKSFM 140 (450)
Q Consensus 64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~ 140 (450)
-.+.+..+|+..++-+- .. .....+....+.+.. ...+.........+ .+ ....+..+++.+.|+..+...
T Consensus 96 ~v~~a~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~- 169 (582)
T TIGR01108 96 FVKKAVENGMDVFRIFD-AL----NDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK- 169 (582)
T ss_pred HHHHHHHCCCCEEEEEE-ec----CcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 45677889998877663 11 112334444444432 22333332211111 11 123455667777888766542
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhh
Q 013050 141 CPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGS 180 (450)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~ 180 (450)
+. .-...+....++++..++ .++++.+|.++....
T Consensus 170 Dt-----~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 170 DM-----AGILTPKAAYELVSALKKRFGLPVHLHSHATTGM 205 (582)
T ss_pred CC-----CCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCc
Confidence 11 124677888887777654 579999999876653
No 208
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=29.27 E-value=2.9e+02 Score=25.25 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecCC
Q 013050 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEM 176 (450)
Q Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~ 176 (450)
+.++.+.+.|+.++-..... .+...++.++-.++++.+.+ .+.+|.+++..
T Consensus 26 ~~i~~l~~~Gv~gl~~~Gst---GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 79 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGST---GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA 79 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTT---TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCC---cccccCCHHHHHHHHHHHHHHccCceEEEecCcc
Confidence 44556677899888764322 33456788887777777654 46788888743
No 209
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=29.05 E-value=5.9e+02 Score=27.31 Aligned_cols=141 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCc-EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050 154 SHIKEGLSVLARYKRP-LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232 (450)
Q Consensus 154 ~~l~~~~~~a~~~g~~-v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (450)
|.-.+++..|.+.|+. |.+..+++....+..+ .......-....+......+++++.++++...+..++|--
T Consensus 17 EIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~K-------ADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYG 89 (1149)
T COG1038 17 EIAIRVFRAANELGIKTVAIYSEEDRLSLHRFK-------ADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYG 89 (1149)
T ss_pred hhhHHHHHHHHhcCceEEEEeeccccchhhhcc-------ccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcc
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCC
Q 013050 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 312 (450)
Q Consensus 233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~ 312 (450)
+- + +..+..+++.+.|+...-+...+.-.+. ....+...+.+.|+++.-+||.
T Consensus 90 fL-----S--En~efA~~c~eaGI~FIGP~~e~ld~~G--------------------dKv~Ar~~A~~agvPvipgt~~ 142 (1149)
T COG1038 90 FL-----S--ENPEFARACAEAGITFIGPKPEVLDMLG--------------------DKVKARNAAIKAGVPVIPGTDG 142 (1149)
T ss_pred cc-----c--CCHHHHHHHHHcCCEEeCCCHHHHHHhc--------------------cHHHHHHHHHHcCCCccCCCCC
Q ss_pred CCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhch
Q 013050 313 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERP 366 (450)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~ 366 (450)
.+. +.+++++.+-..|
T Consensus 143 ~~~--------------------------------------~~ee~~~fa~~~g 158 (1149)
T COG1038 143 PIE--------------------------------------TIEEALEFAEEYG 158 (1149)
T ss_pred Ccc--------------------------------------cHHHHHHHHHhcC
No 210
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.99 E-value=4.6e+02 Score=24.10 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=60.7
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC---ceEEEEeccccCC---C-----ccchHHHHHHHH-
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI---YVDVGFWGGLVPE---N-----AYNASALEALLN- 130 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~-----~~~~~~~~~~~~- 130 (450)
...+.++..|+|+++--+ +..|.......-....+.+.... ...++..++.... . -...++..+.++
T Consensus 88 e~i~~Ai~~GftSVM~Dg-S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~ 166 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDG-SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEA 166 (284)
T ss_pred HHHHHHHHcCCCEEEeCC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHH
Confidence 457788899999997665 44454444444445555554321 1233333322211 0 123455666665
Q ss_pred cCCcEEEEecc--cCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 131 AGVLGLKSFMC--PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 131 ~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
-|+..+...++ +....+.|..+.+.++++-+ ..+.|+.+|-.
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~vPLVLHGg 210 (284)
T PRK09195 167 TGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQ---WVNIPLVLHGA 210 (284)
T ss_pred HCcCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCeEEecC
Confidence 57777655432 22112346788888777654 34899999973
No 211
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.95 E-value=4.5e+02 Score=23.99 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEeccccC-CCccchHHHHHHHHcC
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAG 132 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 132 (450)
++.+......++..|+..+...+...+...-+.+......+ ....+.++- .+... ...+..+..+...+.|
T Consensus 18 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi----~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 18 FAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI----AGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEE----EeCCCccHHHHHHHHHHHHHcC
Confidence 34466677788899999998765222222222332222222 222222222 22222 2334455666667789
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHH-HHHHhcCCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGL-SVLARYKRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~g~~v~~H~ 174 (450)
+.++-....+. ...+.+.+.+.+ +.++.-+++|.++-
T Consensus 94 ad~v~v~pP~y-----~~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 94 ADGFLVVTPYY-----NKPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred CCEEEEcCCcC-----CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99988754332 123455555544 44666789998875
No 212
>PRK06256 biotin synthase; Validated
Probab=28.61 E-value=5e+02 Score=24.36 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=60.5
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEE
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 138 (450)
+.+....+.+...|++.+.-...+..+.....+.+....+.+.....+.+....+ .-..+.+..+.+.|+..+..
T Consensus 94 eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g-----~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 94 EELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLG-----LLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCC-----cCCHHHHHHHHHhCCCEEec
Confidence 4455566677788987765432122232222234444444443332233322221 13356778888899887755
Q ss_pred ecccCCC---CCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 139 FMCPSGI---NDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 139 ~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
....+.. .-.+..+.+...+.++.+++.|+.+..+.
T Consensus 169 ~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 169 NLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCe
Confidence 3221100 00123467888889999999999877664
No 213
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.59 E-value=3.8e+02 Score=27.67 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCceEEEEeccccC-CC-ccchHHHHHHHHcCCcEEEEec
Q 013050 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-EN-AYNASALEALLNAGVLGLKSFM 140 (450)
Q Consensus 64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~ 140 (450)
-.+.+..+|+..++-+- .. .....+....+.+.. ...+.........+ .+ ....+..+++.+.|+..+...
T Consensus 101 ~v~~A~~~Gvd~irif~-~l----nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~- 174 (592)
T PRK09282 101 FVEKAAENGIDIFRIFD-AL----NDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK- 174 (592)
T ss_pred HHHHHHHCCCCEEEEEE-ec----ChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 45677888998887763 11 112333333333322 22233222111111 11 123455667777888766542
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhh
Q 013050 141 CPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGS 180 (450)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~ 180 (450)
+. .-...++.+.++++..++ .++++.+|+++....
T Consensus 175 Dt-----~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl 210 (592)
T PRK09282 175 DM-----AGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGL 210 (592)
T ss_pred Cc-----CCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCc
Confidence 11 124677888888877654 579999999876653
No 214
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=28.17 E-value=4.8e+02 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=13.2
Q ss_pred CHHHHHH-HHHHHHhcCCcEEEec
Q 013050 152 NASHIKE-GLSVLARYKRPLLVHA 174 (450)
Q Consensus 152 ~~~~l~~-~~~~a~~~g~~v~~H~ 174 (450)
..+.+.. +...|++.+.||.+|.
T Consensus 58 ~~~~~~~~~~~~a~~~~VPValHL 81 (286)
T PRK12738 58 ALEEIYALCSAYSTTYNMPLALHL 81 (286)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC
Confidence 3344443 3334666777777777
No 215
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.90 E-value=3.6e+02 Score=24.84 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=31.5
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHH---hcCCcEEEecCC
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA---RYKRPLLVHAEM 176 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~---~~g~~v~~H~~~ 176 (450)
.++.+.+.|+.++...-.. .+.+.++.++-.++++.+. ..+.+|..|+..
T Consensus 26 lv~~~~~~Gv~gi~v~Gst---GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~ 78 (294)
T TIGR02313 26 LIEFQIEGGSHAISVGGTS---GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA 78 (294)
T ss_pred HHHHHHHcCCCEEEECccC---cccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc
Confidence 4555667888887653211 3445678777777766543 345788888843
No 216
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=27.86 E-value=4.6e+02 Score=26.35 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=34.8
Q ss_pred HHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 295 ~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
++...++.|+.+++.||...... .. ...+...+.. ....++|.+++.+ ...|+.++.++
T Consensus 393 P~~~~l~~Gl~VsInTDDPl~f~----------------~t--~~~L~eEY~~a~~~~~Ls~~Dl~e-LarNSV~~Sf~ 452 (496)
T cd01319 393 PFPEFFKRGLNVSLSTDDPLQFH----------------FT--KEPLMEEYSIAAQVWKLSTCDMCE-LARNSVLQSGF 452 (496)
T ss_pred hHHHHHHCCCeEEEeCCCchhhC----------------CC--CCcHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHhCC
Confidence 46677899999999999542211 00 0112222333 3456899888754 45666666655
No 217
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.46 E-value=5.3e+02 Score=24.35 Aligned_cols=104 Identities=8% Similarity=-0.021 Sum_probs=56.1
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccccCCCccchHHHHHHHHcCCcEEEEeccc
Q 013050 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 142 (450)
Q Consensus 64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 142 (450)
..+.+..+|+..++-.. . ....+......+.+.... .+................+..+.+.+.|+..+...
T Consensus 93 dl~~a~~~gvd~iri~~-~----~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--- 164 (337)
T PRK08195 93 DLKMAYDAGVRVVRVAT-H----CTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--- 164 (337)
T ss_pred HHHHHHHcCCCEEEEEE-e----cchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC---
Confidence 35677888998877552 1 112223333434443222 23333222111111222344555666788776442
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCChh
Q 013050 143 SGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 178 (450)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 178 (450)
+-.-...++.+.+.+...++. +.++.+|.++.-
T Consensus 165 ---DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnnl 200 (337)
T PRK08195 165 ---DSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200 (337)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 111257888888888887764 689999996543
No 218
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.30 E-value=4.9e+02 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=12.9
Q ss_pred HHHHH-HHHHHHhcCCcEEEec
Q 013050 154 SHIKE-GLSVLARYKRPLLVHA 174 (450)
Q Consensus 154 ~~l~~-~~~~a~~~g~~v~~H~ 174 (450)
+.+.+ +...|+++++||.+|.
T Consensus 61 ~~~~~~v~~~a~~~~vPV~lHl 82 (286)
T COG0191 61 DSLAHMVKALAEKYGVPVALHL 82 (286)
T ss_pred HHHHHHHHHHHHHCCCCEEEEC
Confidence 34444 3444677777777777
No 219
>PRK07360 FO synthase subunit 2; Reviewed
Probab=27.11 E-value=5.4e+02 Score=24.67 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=64.7
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CceEEEEecc-----cc-CCCccchHHHHHHHHc
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGG-----LV-PENAYNASALEALLNA 131 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~ 131 (450)
+.+....+.+...|++.+.-.+ +..|.....+.+....+.+... ..+.+..... .. .......+.++.+.++
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeA 172 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDA 172 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHc
Confidence 4566677888899999998875 5555444355555555555432 1233322110 00 1112235678899999
Q ss_pred CCcEEEEecccCCC------CCCC-CCCHHHHHHHHHHHHhcCCcEEE
Q 013050 132 GVLGLKSFMCPSGI------NDFP-MTNASHIKEGLSVLARYKRPLLV 172 (450)
Q Consensus 132 g~~~~~~~~~~~~~------~~~~-~~~~~~l~~~~~~a~~~g~~v~~ 172 (450)
|+..+..-. .+.. ...| .++.+...+.++.|++.|+++..
T Consensus 173 Gld~~~~t~-~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 173 GLDSMPGTA-AEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred CCCcCCCcc-hhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 987774100 0000 0012 35777778999999999998654
No 220
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.73 E-value=5.1e+02 Score=23.96 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=34.2
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCCh
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEME 177 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~ 177 (450)
.++.+++.|+.++...-.. .+.+.++.++-+++++.+.+. .++|..++...
T Consensus 30 lv~~li~~Gv~gi~~~Gtt---GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 30 LVEFLIAAGVDGLVVLGTT---GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred HHHHHHHcCCCEEEECCCC---ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 4556677888887664222 445678888888888777653 46788888443
No 221
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=26.51 E-value=4.4e+02 Score=23.04 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=31.4
Q ss_pred HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 125 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
.+..++.|+.-+.... ..+.+.++++++.|+++|..+.+-.
T Consensus 73 ~~ma~~aGAd~~tV~g---------~A~~~TI~~~i~~A~~~~~~v~iDl 113 (217)
T COG0269 73 ARMAFEAGADWVTVLG---------AADDATIKKAIKVAKEYGKEVQIDL 113 (217)
T ss_pred HHHHHHcCCCEEEEEe---------cCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 3444567887665532 4678999999999999999888876
No 222
>PRK15108 biotin synthase; Provisional
Probab=26.30 E-value=5.6e+02 Score=24.25 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=65.3
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEE
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 138 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 138 (450)
+.+....+.+...|++.+.....+..+.....+.+....+.+... .+......+ .-..+.+.++.+.|+..+..
T Consensus 79 eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~-~i~v~~s~G-----~ls~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 79 EQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-GLETCMTLG-----TLSESQAQRLANAGLDYYNH 152 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhC-CCEEEEeCC-----cCCHHHHHHHHHcCCCEEee
Confidence 456666777778999998664312234344455555555555422 222222111 22367889999999987765
Q ss_pred ecccCC--C-CCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 139 FMCPSG--I-NDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 139 ~~~~~~--~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
.+.... . .-.+..+.+.-.+.++.|++.|+.+..|.
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~ 191 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGG 191 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEE
Confidence 432210 0 01123467788889999999999988875
No 223
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.19 E-value=5e+02 Score=23.61 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccc-cCCCc-cchHHHHHHHHcCCcEEEEec
Q 013050 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGL-VPENA-YNASALEALLNAGVLGLKSFM 140 (450)
Q Consensus 64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~ 140 (450)
-.+.+..+|+..++-+. . ....+.+....+.+.... .+........ ...+. ...+..+.+.+.|+..+...
T Consensus 96 di~~~~~~g~~~iri~~-~----~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~- 169 (275)
T cd07937 96 FVEKAAKNGIDIFRIFD-A----LNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK- 169 (275)
T ss_pred HHHHHHHcCCCEEEEee-c----CChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc-
Confidence 34566778888776652 1 122444444444443322 2222221111 11122 22345556667888776542
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChh
Q 013050 141 CPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEK 178 (450)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~ 178 (450)
+-.-...++.+.+++...++ .+.++.+|.++..
T Consensus 170 -----DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 203 (275)
T cd07937 170 -----DMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTS 203 (275)
T ss_pred -----CCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 11125678888888887665 4789999996643
No 224
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.81 E-value=5.3e+02 Score=23.72 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=60.5
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cc--eEEEEeccccCC----C----ccchHHHHHHHH-
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IY--VDVGFWGGLVPE----N----AYNASALEALLN- 130 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~----~----~~~~~~~~~~~~- 130 (450)
.....++..|+|+++-=+ +..|............+.+... .. ..++..++.... . -...++..+.++
T Consensus 88 e~i~~ai~~GftSVMiDg-S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~ 166 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDG-SHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVER 166 (284)
T ss_pred HHHHHHHHcCCCeEEecC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHH
Confidence 456788899999997655 4455444444455555555432 11 233333322221 0 013455555554
Q ss_pred cCCcEEEEecc--cCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 131 AGVLGLKSFMC--PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 131 ~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
-|+..+..-++ +....+.|..+.+.++++-+ .-+.|+.+|-.
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~---~~~iPLVlHGg 210 (284)
T PRK12737 167 TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIRE---KVSIPLVLHGA 210 (284)
T ss_pred hCCCEEeeccCccccccCCCCcCCHHHHHHHHH---HhCCCEEEeCC
Confidence 67776655332 22212346778887777644 34799999973
No 225
>PRK06801 hypothetical protein; Provisional
Probab=25.75 E-value=5.3e+02 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.6
Q ss_pred HHHHHhcCCcEEEec
Q 013050 160 LSVLARYKRPLLVHA 174 (450)
Q Consensus 160 ~~~a~~~g~~v~~H~ 174 (450)
...|++...||.+|.
T Consensus 67 ~~~a~~~~vpV~lHl 81 (286)
T PRK06801 67 KFEAARHDIPVVLNL 81 (286)
T ss_pred HHHHHHCCCCEEEEC
Confidence 334555666666666
No 226
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.38 E-value=5.3e+02 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=13.1
Q ss_pred CHHHHHHHH-HHHHhcCCcEEEec
Q 013050 152 NASHIKEGL-SVLARYKRPLLVHA 174 (450)
Q Consensus 152 ~~~~l~~~~-~~a~~~g~~v~~H~ 174 (450)
..+.+..++ ..|++.+.||.+|.
T Consensus 56 ~~~~~~~~~~~~a~~~~VPValHL 79 (282)
T TIGR01858 56 GTEYIVALCSAASTTYNMPLALHL 79 (282)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC
Confidence 344444433 34566677777777
No 227
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.18 E-value=4.7e+02 Score=24.99 Aligned_cols=107 Identities=10% Similarity=0.076 Sum_probs=65.3
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccccCCCccchHHHHHHHHcCCcEE
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGL 136 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 136 (450)
.+.+....+.+...|++.+.-.+ +..+.....+.+....+.+.... .+.+. ...-..+.+..+.+.|+..+
T Consensus 105 ~eEI~~~a~~~~~~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Ie-------i~~lt~e~~~~Lk~aGv~r~ 176 (366)
T TIGR02351 105 EEEIEREIEAIKKSGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFSSLAIE-------VQPLNEEEYKKLVEAGLDGV 176 (366)
T ss_pred HHHHHHHHHHHHhCCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCccccc-------cccCCHHHHHHHHHcCCCEE
Confidence 34566677788889999998775 54454455666666655554321 11111 11234567889999999988
Q ss_pred EEecccCCCC-------CCCCCCHHHHHHHHHHHHhcCCc-EEE
Q 013050 137 KSFMCPSGIN-------DFPMTNASHIKEGLSVLARYKRP-LLV 172 (450)
Q Consensus 137 ~~~~~~~~~~-------~~~~~~~~~l~~~~~~a~~~g~~-v~~ 172 (450)
.......... ..+.-+.+.-.+.++.|++.|+. |.+
T Consensus 177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~ 220 (366)
T TIGR02351 177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGI 220 (366)
T ss_pred EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeece
Confidence 7754221100 01233567777889999998886 444
No 228
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.12 E-value=5.4e+02 Score=23.66 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cc--eEEEEeccccCC----C----ccchHHHHHHHH-
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IY--VDVGFWGGLVPE----N----AYNASALEALLN- 130 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~----~----~~~~~~~~~~~~- 130 (450)
...+.++..|+|+++--+ +..|........+...+.+... .. ..++..++.... . -...++..+.++
T Consensus 88 e~i~~ai~~GFtSVM~Dg-S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~ 166 (286)
T PRK12738 88 DDIRRKVHAGVRSAMIDG-SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVEL 166 (286)
T ss_pred HHHHHHHHcCCCeEeecC-CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHH
Confidence 356677899999997665 4455444444445555555432 11 233333332221 1 123556666665
Q ss_pred cCCcEEEEecc--cCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 131 AGVLGLKSFMC--PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 131 ~g~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
-|+..+..-++ +......|..+.+.++++-+ ..++|+.+|-.
T Consensus 167 TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~---~~~vPLVLHGg 210 (286)
T PRK12738 167 TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE---VVDVPLVLHGA 210 (286)
T ss_pred hCCCEEEeccCcccCCCCCCCcCCHHHHHHHHH---HhCCCEEEeCC
Confidence 48877765432 11112346677777777644 34899999973
No 229
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=24.50 E-value=3.1e+02 Score=25.22 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEec
Q 013050 151 TNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 151 ~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
.+.+.++.+++.|++.+.||.+..
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~ 48 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSPVILQI 48 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEc
Confidence 445566666666666666665555
No 230
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.32 E-value=5.5e+02 Score=23.46 Aligned_cols=112 Identities=10% Similarity=-0.023 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHhC-CceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHHHHcCCcE
Q 013050 58 WEGFPSGTKAAAAG-GITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAGVLG 135 (450)
Q Consensus 58 ~~~~~~~~~~~~~~-GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 135 (450)
.+.+....+.++.. |++.+...+...+...-+.+......+.......-++....+.. ....+..+..+...+.|+.+
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~ 99 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDA 99 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCE
Confidence 34566777788889 99999887632232222333322322222111011122222222 22334455666777899999
Q ss_pred EEEecccCCCCCCCCCCHHHHHHHHH-HHHhc-CCcEEEec
Q 013050 136 LKSFMCPSGINDFPMTNASHIKEGLS-VLARY-KRPLLVHA 174 (450)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~~-g~~v~~H~ 174 (450)
+-....+. ...+.+.+.+.++ .++.- +++|.++-
T Consensus 100 v~~~~P~y-----~~~~~~~i~~~~~~v~~a~~~lpi~iYn 135 (288)
T cd00954 100 ISAITPFY-----YKFSFEEIKDYYREIIAAAASLPMIIYH 135 (288)
T ss_pred EEEeCCCC-----CCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 87654321 1234556665444 46666 79998874
No 231
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.17 E-value=5.7e+02 Score=23.53 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=61.7
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cc--eEEEEeccccCC---C---ccchHHHHHHHH-cC
Q 013050 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IY--VDVGFWGGLVPE---N---AYNASALEALLN-AG 132 (450)
Q Consensus 63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~---~---~~~~~~~~~~~~-~g 132 (450)
...+.++..|+|+++--+ +..|.......-+...+.+... .. ..++..++.... . -...++..+.++ -|
T Consensus 91 e~i~~ai~~GftSVM~Dg-S~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tg 169 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDA-SHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATG 169 (285)
T ss_pred HHHHHHHHcCCCEEEEeC-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhC
Confidence 445677999999997665 4455555555555555555532 12 223333322211 0 124555666655 58
Q ss_pred CcEEEEecc--cCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050 133 VLGLKSFMC--PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175 (450)
Q Consensus 133 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 175 (450)
+..+...++ +....+.|..+.+.++++. ++.+.|+.+|-.
T Consensus 170 vD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~---~~~~iPLVLHGg 211 (285)
T PRK07709 170 IDCLAPALGSVHGPYKGEPNLGFAEMEQVR---DFTGVPLVLHGG 211 (285)
T ss_pred CCEEEEeecccccCcCCCCccCHHHHHHHH---HHHCCCEEEeCC
Confidence 877765432 2111234678888777753 455899999983
No 232
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=24.12 E-value=5e+02 Score=22.85 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=23.3
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcc
Q 013050 230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 265 (450)
Q Consensus 230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 265 (450)
|......|........+.++.+++.|...-...+|.
T Consensus 85 gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~ 120 (223)
T PRK08745 85 GATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPA 120 (223)
T ss_pred CCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCC
Confidence 554555676632245677788888887777666664
No 233
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=24.00 E-value=1.1e+02 Score=28.88 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 123 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
..+++.++.|+.++...+...+.. .....+.+.++.++|+++|+++.++.
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~~--E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSEE--SRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHH--HHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 458889999998887765443211 11234567788899999999999866
No 234
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.50 E-value=5.8e+02 Score=23.43 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=13.6
Q ss_pred CHHHHHH-HHHHHHhcCCcEEEec
Q 013050 152 NASHIKE-GLSVLARYKRPLLVHA 174 (450)
Q Consensus 152 ~~~~l~~-~~~~a~~~g~~v~~H~ 174 (450)
..+.+.. +...|++.+.||.+|.
T Consensus 58 g~~~~~~~~~~~a~~~~VPValHL 81 (284)
T PRK12737 58 GTDYIVAIAEVAARKYNIPLALHL 81 (284)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC
Confidence 3344444 3345666777777777
No 235
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.45 E-value=5.8e+02 Score=23.39 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.6
Q ss_pred HHHhcCCcEEEec
Q 013050 162 VLARYKRPLLVHA 174 (450)
Q Consensus 162 ~a~~~g~~v~~H~ 174 (450)
.|++...||.+|.
T Consensus 69 ~a~~~~vpv~lHl 81 (281)
T PRK06806 69 AAKQAKVPVAVHF 81 (281)
T ss_pred HHHHCCCCEEEEC
Confidence 3444455555555
No 236
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.40 E-value=7.1e+02 Score=24.37 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=49.3
Q ss_pred cCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCc---EEEec
Q 013050 102 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP---LLVHA 174 (450)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~---v~~H~ 174 (450)
....+.++.|..+. ......+.+..+.|+..+..|...+..-..+..+.+...+..+.++++|+. +.+|+
T Consensus 127 ~~~~~~iGaHvSia---GG~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~Ha 199 (413)
T PTZ00372 127 EKSNVYIGAHVSAS---GGVDNSPINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHG 199 (413)
T ss_pred hccCceEEEEEecc---ccHHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeec
Confidence 34455666664432 334457788888999999999876543233456778888999999999774 78888
No 237
>PRK12999 pyruvate carboxylase; Reviewed
Probab=23.37 E-value=8.4e+02 Score=27.70 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=59.2
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC---ceEEEEeccccCCCc--cc----hHHHHHHHHcCCcE
Q 013050 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI---YVDVGFWGGLVPENA--YN----ASALEALLNAGVLG 135 (450)
Q Consensus 65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~----~~~~~~~~~~g~~~ 135 (450)
.+.+..+|+..++.+- .. ...+.+....+...... .+.+.+.+.+.+... .. .+..+++.+.|+..
T Consensus 633 i~~a~~~Gid~~rifd--~l---nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~ 707 (1146)
T PRK12999 633 VREAAAAGIDVFRIFD--SL---NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHI 707 (1146)
T ss_pred HHHHHHcCCCEEEEec--cC---ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 6677889999988773 11 12344444444443222 123333322222221 12 34556667788876
Q ss_pred EEEecccCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhhh
Q 013050 136 LKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSE 181 (450)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~ 181 (450)
+... +. .-.+.+....+++...++ .++++.+|.++.....
T Consensus 708 i~ik-Dt-----~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla 748 (1146)
T PRK12999 708 LAIK-DM-----AGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNG 748 (1146)
T ss_pred EEEC-Cc-----cCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchH
Confidence 6441 11 124677888887777654 5899999998766533
No 238
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.02 E-value=3.6e+02 Score=21.43 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 149 PMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 149 ~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
|.+..+.+.++++++++.|+.|.+..
T Consensus 39 p~L~~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 39 PGLKRDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CCCCcCHHHHHHHHHHHCCCEEEEEE
Confidence 55678999999999999999999987
No 239
>PLN02389 biotin synthase
Probab=22.92 E-value=6.9e+02 Score=24.08 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=64.4
Q ss_pred cchHHHHHHHHhCCceEEEeCCC--CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEE
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 136 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 136 (450)
+.+....+.+...|++.+.-... +..+.....+.+....+.+.. ..+.+. .....-..+.+..|.+.|+..+
T Consensus 119 EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-~~l~i~-----~s~G~l~~E~l~~LkeAGld~~ 192 (379)
T PLN02389 119 DDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-MGMEVC-----CTLGMLEKEQAAQLKEAGLTAY 192 (379)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-CCcEEE-----ECCCCCCHHHHHHHHHcCCCEE
Confidence 45666677778889999864310 111111224445555555442 223322 1122234678899999999887
Q ss_pred EEecccCC--C-CCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 137 KSFMCPSG--I-NDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 137 ~~~~~~~~--~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
........ . .-.+..+.+...+.++.|++.|+.+..|.
T Consensus 193 ~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 193 NHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred EeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEE
Confidence 66433110 0 11123477888899999999999998886
No 240
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.92 E-value=6.1e+02 Score=23.44 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecC
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAE 175 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~ 175 (450)
.++.+.+.|+.++...-.. .+.+.++.++-+++++.+.+ .+.+|..++.
T Consensus 33 li~~l~~~Gv~Gi~~~Gst---GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 84 (303)
T PRK03620 33 HLEWLAPYGAAALFAAGGT---GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG 84 (303)
T ss_pred HHHHHHHcCCCEEEECcCC---cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 3445556677777553221 33456777776666665543 2467777774
No 241
>PRK05926 hypothetical protein; Provisional
Probab=22.83 E-value=6.3e+02 Score=24.26 Aligned_cols=111 Identities=11% Similarity=-0.045 Sum_probs=61.5
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccc-----cCC-CccchHHHHHHHHc
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGL-----VPE-NAYNASALEALLNA 131 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~ 131 (450)
+.+....+++ ..|+|.+.-.+ +..|. ...+.+....+.+.... .+.+....+. ... .....+.++.+.+.
T Consensus 102 eeI~~~a~~a-~~G~~ei~iv~-G~~p~-~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeA 178 (370)
T PRK05926 102 DQLVQSIKEN-PSPITETHIVA-GCFPS-CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIA 178 (370)
T ss_pred HHHHHHHHHH-hcCCCEEEEEe-CcCCC-CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHc
Confidence 4455566666 68999998775 44443 34555555555554432 2444433221 111 11235668888888
Q ss_pred CCcEEEEe-c----ccCCCCCC-CCCCHHHHHHHHHHHHhcCCcEEE
Q 013050 132 GVLGLKSF-M----CPSGINDF-PMTNASHIKEGLSVLARYKRPLLV 172 (450)
Q Consensus 132 g~~~~~~~-~----~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~ 172 (450)
|...+... . ........ ..++.+...+.++.|++.|+++..
T Consensus 179 Gl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 179 GLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred CcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccC
Confidence 88665431 0 00000000 135667778999999999987543
No 242
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=22.67 E-value=97 Score=22.70 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHhhchhHHhCCC------CCCccccCCCccEEEEeCCC
Q 013050 352 GVTLEQLASWWSERPAKLAGQV------SKGAIAIGNHADLVVWEPEA 393 (450)
Q Consensus 352 gls~~~al~~aT~~~A~~lg~~------~~G~I~~G~~ADlvv~d~~~ 393 (450)
+++++++-+.-....|++..+. ...++ +|.+|++-|||.+.
T Consensus 13 ~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv-~G~~~n~sifdv~s 59 (90)
T TIGR03221 13 DMPAEKAAAIKAREKAYAQELQREGKWRHLWRV-AGEYANYSIFDVES 59 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEe-cCCceeEEEEEcCC
Confidence 3666666666666666655552 23445 99999999999775
No 243
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=22.57 E-value=1.1e+02 Score=29.49 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEec-CChhhhhhhhhh
Q 013050 150 MTNASHIKEGLSVLARYKRPLLVHA-EMEKGSERHVKL 186 (450)
Q Consensus 150 ~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~ 186 (450)
..+.+.++++++.|+++|++|..|+ +....+......
T Consensus 210 ~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~~~ 247 (383)
T PRK15446 210 RYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAHAL 247 (383)
T ss_pred hcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHHHc
Confidence 4678999999999999999999999 566666555554
No 244
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=22.49 E-value=2.4e+02 Score=29.14 Aligned_cols=24 Identities=4% Similarity=0.021 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEe
Q 013050 150 MTNASHIKEGLSVLARYKRPLLVH 173 (450)
Q Consensus 150 ~~~~~~l~~~~~~a~~~g~~v~~H 173 (450)
.-+++.+++.++.||+.|+.|.+-
T Consensus 210 yGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 210 YGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEE
Confidence 467899999999999999998874
No 245
>PRK08123 histidinol-phosphatase; Reviewed
Probab=22.47 E-value=1.1e+02 Score=27.91 Aligned_cols=37 Identities=16% Similarity=0.004 Sum_probs=26.5
Q ss_pred ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 79 (450)
Q Consensus 43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~ 79 (450)
++|.|+|.....-...+.+....+.+.+.|++.+.-.
T Consensus 3 ~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~t 39 (270)
T PRK08123 3 KRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFT 39 (270)
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 4799999865432222457888889999999987543
No 246
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=22.29 E-value=6.2e+02 Score=23.28 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHH----HHhcCCceEEEEeccccCCCccchHHHHHHHHcCC
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD----AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 133 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (450)
.+.+....+.++..|+..++..+...+...-+.+......+ ....+ +.+.... ......+..+..+...+.|+
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~--~pvi~gv-~~~~t~~ai~~a~~A~~~Ga 96 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGR--IPFAPGT-GALNHDETLELTKFAEEAGA 96 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCC--CcEEEEC-CcchHHHHHHHHHHHHHcCC
Confidence 34566677788899999998775222322222332222222 22222 2222111 12233445566667777899
Q ss_pred cEEEEecccCCCCCCCCCCHHHHHHHH-HHHHhc-CCcEEEec
Q 013050 134 LGLKSFMCPSGINDFPMTNASHIKEGL-SVLARY-KRPLLVHA 174 (450)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~~-g~~v~~H~ 174 (450)
.++-....+- ...+.+.+.+.+ ..++.- +++|.++-
T Consensus 97 d~v~v~pP~y-----~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 97 DAAMVIVPYY-----NKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred CEEEEcCccC-----CCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 9887755331 123455555544 446666 79988874
No 247
>PLN02768 AMP deaminase
Probab=22.21 E-value=4.7e+02 Score=27.96 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 293 ~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
...+..+++.|+.+++.||........ .+.............+++.+++.++ +.|...+.++
T Consensus 714 ~HPf~~f~~~GL~VSLNTDDPL~fhtT-----------------~epL~EEYsvAak~~~LS~~DL~EL-arNSV~aSff 775 (835)
T PLN02768 714 RNPFPMFFLRGLNVSLSTDDPLQIHLT-----------------KEPLVEEYSIAASVWKLSSCDLCEI-ARNSVYQSGF 775 (835)
T ss_pred hChHHHHHHCCCEEEEcCCCccccCCC-----------------CCCHHHHHHHHHHHhCcCHHHHHHH-HHHHHHHhcC
Confidence 445678899999999999964331110 0011222222345678998887765 5566666665
No 248
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=22.12 E-value=1.9e+02 Score=18.94 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=21.0
Q ss_pred EEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEe
Q 013050 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM 40 (450)
Q Consensus 6 V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~ 40 (450)
|-|.+|||..-...........+..-.|.+|.+|.
T Consensus 5 vKvvnGki~eyenG~~kRTYGsN~v~v~~~g~~VA 39 (59)
T PF05862_consen 5 VKVVNGKIEEYENGSYKRTYGSNAVAVQVDGGIVA 39 (59)
T ss_pred EEEeccEEEEeeCCceEeecCCceEEEeeCCCEEE
Confidence 45779999887655443333344555566666553
No 249
>PRK08204 hypothetical protein; Provisional
Probab=21.85 E-value=7.6e+02 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238 (450)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~ 238 (450)
++.+.+..+++++.+. +.+++ .|+
T Consensus 198 ~~~e~l~~~~~~A~~~-------g~~v~-~H~ 221 (449)
T PRK08204 198 SSWEVARADFRLAREL-------GLPIS-MHQ 221 (449)
T ss_pred CCHHHHHHHHHHHHHc-------CCcEE-EEE
Confidence 3445667777777765 66666 455
No 250
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.77 E-value=6e+02 Score=22.97 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEecCC
Q 013050 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEM 176 (450)
Q Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~ 176 (450)
.++.+.+.|+.++...-.. .+.+..+.++-+++++.+.+. +.+|..++..
T Consensus 23 ~i~~l~~~Gv~gi~~~Gst---GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~ 75 (281)
T cd00408 23 LVEFLIEAGVDGLVVLGTT---GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA 75 (281)
T ss_pred HHHHHHHcCCCEEEECCCC---cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 4455566777777543211 333566777766666665442 4677777744
No 251
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.71 E-value=6.9e+02 Score=23.66 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=64.2
Q ss_pred cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccc-----cC-CCccchHHHHHHHHc
Q 013050 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGL-----VP-ENAYNASALEALLNA 131 (450)
Q Consensus 59 ~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~ 131 (450)
+.+....+.+...|++.+.... +..+. ...+.+....+.+.... .+.+...... .. ......+.+..+.+.
T Consensus 82 eeI~~~a~~~~~~G~~~v~l~~-G~~p~-~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeA 159 (351)
T TIGR03700 82 EEIVARVKEAYAPGATEVHIVG-GLHPN-LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEA 159 (351)
T ss_pred HHHHHHHHHHHHCCCcEEEEec-CCCCC-CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4455566777789999998774 44443 33455555555554432 2444432211 01 112234568888888
Q ss_pred CCcEEEEe-c-ccC-C--CCCCC-CCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 132 GVLGLKSF-M-CPS-G--INDFP-MTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 132 g~~~~~~~-~-~~~-~--~~~~~-~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
|...+... . ... . ....+ ..+.+...+.++.|++.|+++..+.
T Consensus 160 Gld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~ 208 (351)
T TIGR03700 160 GLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATM 208 (351)
T ss_pred CCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEE
Confidence 87655410 0 000 0 00011 2456777789999999999987765
No 252
>PLN03055 AMP deaminase; Provisional
Probab=21.60 E-value=3.7e+02 Score=27.65 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050 293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 372 (450)
Q Consensus 293 ~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~ 372 (450)
..++..+++.|+.++++||........ .+.............++|..+..++ ..|+.++.++
T Consensus 481 ~HP~~~~~~~Gl~VSInTDDPl~f~tT-----------------~epL~eEY~~aa~~~~LS~~DL~eL-arNSV~~Sf~ 542 (602)
T PLN03055 481 RNPFPMFFARGLNVSLSTDDPLQIHLT-----------------KEPLVEEYSIAAQVWKLSSCDLCEI-ARNSVLQSGF 542 (602)
T ss_pred hChHHHHHHCCCEEEEcCCCcchhcCC-----------------CCcHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHhcC
Confidence 345678899999999999954331100 0011122222345668998888544 5677766666
No 253
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.54 E-value=5.7e+02 Score=23.35 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHc-CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh---cCCcEEEecCC
Q 013050 124 ALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR---YKRPLLVHAEM 176 (450)
Q Consensus 124 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~---~g~~v~~H~~~ 176 (450)
.++.+.+. |+.++...-.. .+.+..+.++-.++++.+.+ .+++|..++..
T Consensus 26 ~i~~l~~~~Gv~gi~~~Gst---GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~ 79 (288)
T cd00954 26 IVDYLIEKQGVDGLYVNGST---GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS 79 (288)
T ss_pred HHHHHHhcCCCCEEEECcCC---cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC
Confidence 45566677 88887653222 34467788877777776544 35678887743
No 254
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=21.49 E-value=78 Score=24.43 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=39.0
Q ss_pred hchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCC
Q 013050 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC 443 (450)
Q Consensus 364 ~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~ 443 (450)
+.+-..+|+.+.|.|-.|-+| |=.++.....+ .- .+||.... .-...|+..|++|-+ =++..+.-
T Consensus 13 ~~ats~~g~~~yGkimiGDka-FEFyn~~n~~d----------yI-QIPW~eI~--~V~a~V~fkgk~I~R-F~I~Tk~~ 77 (118)
T PF06115_consen 13 TKATSYLGLGKYGKIMIGDKA-FEFYNDRNVED----------YI-QIPWEEID--YVIASVSFKGKWIPR-FAIFTKKN 77 (118)
T ss_pred EeeEEEecccccCeEEEcccc-eEeecCCChhh----------cE-EeChhhee--EEEEEEEECCCEEee-EEEEECCC
Confidence 344456777668999988888 55555322111 00 34554322 123468889999877 34444444
Q ss_pred Ccccc
Q 013050 444 GSPIL 448 (450)
Q Consensus 444 g~~~~ 448 (450)
|.+.+
T Consensus 78 G~f~F 82 (118)
T PF06115_consen 78 GKFTF 82 (118)
T ss_pred CEEEE
Confidence 55544
No 255
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.29 E-value=6.6e+02 Score=23.23 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=61.3
Q ss_pred CcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHH----HHHHHhcCCceEEEEeccccCCCccchHHHHHHHHc
Q 013050 56 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL----KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 131 (450)
Q Consensus 56 ~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (450)
...+.+....+.++..|+-.++..+...+...-+.+.-.. ..+....+.++-.+. ......+..+..+...+.
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~---g~~~t~eai~lak~a~~~ 98 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV---GSNSTAEAIELAKHAEKL 98 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec---CCCcHHHHHHHHHHHHhc
Confidence 3445577778889999999998876222222222332222 222333333322222 122333445556666778
Q ss_pred CCcEEEEecccCCCCCCCCCCHHHHHH-HHHHHHhcCCcEEEec
Q 013050 132 GVLGLKSFMCPSGINDFPMTNASHIKE-GLSVLARYKRPLLVHA 174 (450)
Q Consensus 132 g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~a~~~g~~v~~H~ 174 (450)
|+.++-....+- ...+.+.+.+ ....++.-++|+.+.-
T Consensus 99 Gad~il~v~PyY-----~k~~~~gl~~hf~~ia~a~~lPvilYN 137 (299)
T COG0329 99 GADGILVVPPYY-----NKPSQEGLYAHFKAIAEAVDLPVILYN 137 (299)
T ss_pred CCCEEEEeCCCC-----cCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 999998865332 1233444444 4555677789888875
No 256
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.03 E-value=2e+02 Score=24.77 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=55.4
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC---ccchHHHHHHHHcCC
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---AYNASALEALLNAGV 133 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~ 133 (450)
..+++....+.+...|+..++..+ ..+....+.... ..+.+....++.... .....++++.++.|+
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p----------~~v~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNP----------CFVPLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcH----------HHHHHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCC
Confidence 345677778888888998887664 112222222222 223333322222222 233566788889999
Q ss_pred cEEEEecccCCC-CCCCCCCHHHHHHHHHHHHhcCCcEEE
Q 013050 134 LGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLV 172 (450)
Q Consensus 134 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~ 172 (450)
..+...+..... ++......+++.++.+.++ |+++.+
T Consensus 84 devdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 84 DEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred CEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 999886644311 1111223455566666555 666655
No 257
>PRK08508 biotin synthase; Provisional
Probab=20.85 E-value=6.4e+02 Score=22.95 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=61.3
Q ss_pred ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccccCCCccchHHHHHHHHcCCcEE
Q 013050 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPENAYNASALEALLNAGVLGL 136 (450)
Q Consensus 58 ~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 136 (450)
.+.+....+.+...|++.+.-...+........+.+....+.+.... .+.+... ......+.++++.+.|+..+
T Consensus 42 ~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s-----~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 42 IEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC-----NGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec-----CCCCCHHHHHHHHHcCCCEE
Confidence 35566667777778999886431011111223444444444443322 2222111 12224678889999998777
Q ss_pred EEecccCCC---CCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 137 KSFMCPSGI---NDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 137 ~~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
..-...... .-.+..+++...+.++.|++.|+.+..+.
T Consensus 117 ~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 117 NHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred cccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeeccee
Confidence 642211100 11123567778888889999998876654
No 258
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=20.60 E-value=4.1e+02 Score=24.02 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe--ccc-cCCC-ccchHHHHHHHHcC
Q 013050 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW--GGL-VPEN-AYNASALEALLNAG 132 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~~~~~~~~~~g 132 (450)
..+++....++++.+|+..++..+ +. +....+.......+-+... ..+ .... ......+++.++.|
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~~-~~---------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMHK-GL---------ARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCH-hH---------HhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 446688889999999999998765 11 1111111111111111111 111 1111 23345678889999
Q ss_pred CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050 133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174 (450)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 174 (450)
+..+.......... .....+.+.++.+.++++|+++.++.
T Consensus 107 ad~v~~~~~~g~~~--~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 107 ADAVSVHVNVGSET--EAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred CCEEEEEEecCChh--HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 98777654332110 11234567778888899999998875
No 259
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.26 E-value=6.2e+02 Score=22.56 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCChhhhh
Q 013050 150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 181 (450)
Q Consensus 150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 181 (450)
..+.+...++.+.+++.|+.+..=+-+...+.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d 83 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVD 83 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHH
Confidence 35778899999999999998888775554433
Done!