RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013050
(450 letters)
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 797 bits (2060), Expect = 0.0
Identities = 324/446 (72%), Positives = 376/446 (84%), Gaps = 3/446 (0%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
AVE++ G I+S+ EE+ P++ K V+DYG AV+MPGLIDVH HL++PGRTEWEGFP+G
Sbjct: 63 AVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTG 122
Query: 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
TKAAAAGGITTL+DMPLNS PST S ETL+LK++AA+ ++YVDVGFWGGLVPENA+NAS
Sbjct: 123 TKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASV 182
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
LE LL+AG LGLKSFMCPSGINDFPMT A+HIK L VLA+Y RPLLVHAE+ E
Sbjct: 183 LEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS 242
Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
+L+ D RSYSTYLK+RPPSWE+ AIR+LL VAKDTR G AEGAH+HIVHLSDA SS
Sbjct: 243 RLDADP---RSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESS 299
Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
L+L+ EAK GDS+TVETCPHYLAFSAEEIPDGDTR+KCAPPIRDAAN+E LW+AL+DG
Sbjct: 300 LELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGD 359
Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
IDMLSSDHSP+ P+LKLL+EGNFL+AWGGISSLQFVLP TW+ GR YG+TLEQLA WWSE
Sbjct: 360 IDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWWSE 419
Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
RPAKLAG SKGAIA G AD+VVW+PEAEF LD +P++ KH S+S YLG +LSGKV+A
Sbjct: 420 RPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIA 479
Query: 425 TISRGNLVYKEGNHAPAACGSPILAT 450
T RGNLV+ EG HA ACGSPILA
Sbjct: 480 TFVRGNLVFLEGKHAKQACGSPILAK 505
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 583 bits (1504), Expect = 0.0
Identities = 217/445 (48%), Positives = 283/445 (63%), Gaps = 19/445 (4%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ +K G I +I + + V+D G V+MPGLID H H+++PGRTEWEGF +GT
Sbjct: 20 IAVKGGKIAAIGPDIANTEAEE---VIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGT 76
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
KAAAAGGITT+IDMPLNS P T + E L+ K++AA+ +++VDVGFWGGLVP N L
Sbjct: 77 KAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQL 133
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
L AGV+G K F+CPSG+++FP + ++E + LA+ L VHAE + +E +
Sbjct: 134 RPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQE 193
Query: 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245
R Y YL +RP E AI+ +L +AK+T G LHIVHLS A + +
Sbjct: 194 QAKAK-GKRDYRDYLASRPVFTEVEAIQRILLLAKET-------GCRLHIVHLSSAEA-V 244
Query: 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
L+ EA+ G +TVETCPHYL F+AE++PDG T FKCAPPIRDAAN+E+LWEAL +G I
Sbjct: 245 PLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDI 304
Query: 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSE 364
DM+ SDHSP PELKLL +G+F KAWGGIS LQ LPV + +LE +A E
Sbjct: 305 DMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCE 364
Query: 365 RPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
PAKL G KG IA+G AD VVW+PE EF +D + + IS Y+GR L G+V
Sbjct: 365 NPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYY--KNKISPYVGRTLKGRVH 422
Query: 424 ATISRGNLVYKEGNHAPAACGSPIL 448
ATI RG +VY++G G +L
Sbjct: 423 ATILRGTVVYQDGEVVGEPLGQLLL 447
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 440 bits (1133), Expect = e-152
Identities = 197/445 (44%), Positives = 268/445 (60%), Gaps = 21/445 (4%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
V +K G I +I + P +++D G V+ PG++D H H+++PGRTEWEGF +G
Sbjct: 19 DVGVKGGKIAAIGPDILGP----AAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETG 74
Query: 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
T+AAAAGGITT IDMPLNS P+T + +L+ K +AA+ ++ VDVGFWGGLVP YN
Sbjct: 75 TRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP---YNLDD 131
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
L L AGV+G K+F+ PSG ++FP + + +G+ LAR + LLVHAE + +
Sbjct: 132 LRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSA-L 190
Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
E YL +RP E AIR L +AK T G +H+VHLS ++ +
Sbjct: 191 GEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT-------GCRVHVVHLS-SAEA 242
Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
++L+ EAK G +TVETCPHYL +AEE+PDG T KCAPPIRD AN+E LWEAL++G
Sbjct: 243 VELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGL 302
Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWS 363
ID + SDHSP P+LK G+F KAWGGI+ LQ L V + +K G+ LE +A +
Sbjct: 303 IDCVVSDHSPCTPDLK--RAGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMA 360
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
PAK G KG IA G AD V +P+ + L D + +H +S Y+GR + G+V
Sbjct: 361 TNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPDDLYY-RHK-VSPYVGRTIGGRVR 418
Query: 424 ATISRGNLVYKEGNHAPAACGSPIL 448
AT RG +Y + A G +L
Sbjct: 419 ATYLRGQCIYDDEQFIGAPKGQLLL 443
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 354 bits (910), Expect = e-119
Identities = 168/433 (38%), Positives = 236/433 (54%), Gaps = 27/433 (6%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
IK G I I E P +++D + PG+IDVH H ++PGRT WEGF +G+ A
Sbjct: 25 IKNGKIAEIAPEISSP----AREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATGSAA 80
Query: 68 AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 127
AAGG TT DMPLNS P T++ E L K + A ++ VD WGGLVP N L
Sbjct: 81 LAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRE 137
Query: 128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKGSERHV 184
L AGV+G K+FM SG ++F ++ + EG+ +A + L +HAE + +
Sbjct: 138 LAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQA 197
Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
+ + T D R YL++RP E A++ L A++T G LH VH+S +
Sbjct: 198 RQQGKT-DVRD---YLESRPVVAELEAVQRALLYAQET-------GCPLHFVHISSG-KA 245
Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
+ L+ EAK G ++VETCPHYL F+ E+ KCAPP+R + KE+LW L+ G
Sbjct: 246 VALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGE 305
Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWS 363
IDM+SSDHSP PELK + +F WGGIS Q L V + G + G+ LE +A +
Sbjct: 306 IDMISSDHSPCPPELK--EGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLA 363
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
PAK G KG + +G AD V+ + + + L + + +H S Y GR G+V+
Sbjct: 364 TNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKED-LFYRHK-QSPYEGRTFPGRVV 421
Query: 424 ATISRGNLVYKEG 436
AT RG VY++G
Sbjct: 422 ATYLRGQCVYQDG 434
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 331 bits (851), Expect = e-110
Identities = 150/432 (34%), Positives = 224/432 (51%), Gaps = 28/432 (6%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ IK+G I +I + +++D +++PGL+D+H H +PG E F +G+
Sbjct: 21 ILIKDGKIAAIGKN---LEPTSGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGS 77
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
+AAAAGG+TT++DMP P + E L+ K++ A+ + VD F+GGL N L
Sbjct: 78 RAAAAGGVTTVVDMPNTKPPID-TAEALEDKLERAKGKSVVDYAFYGGLTK---GNLGKL 133
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
E G K FM S + ++E L A +LVHAE + V
Sbjct: 134 ELTERGVEAGFKGFMDDST----GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVM 189
Query: 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245
E R+ L RPP E +AI L +A+ T GA +HI H+S S +
Sbjct: 190 NEG----LRAPELGLAGRPPIAEASAIARDLELARAT-------GARVHICHISTKES-V 237
Query: 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
+L+ AK G +T E PH+L E+I D T K PP+RD ++E LWEAL DG I
Sbjct: 238 ELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVI 297
Query: 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 365
D+++SDH+P E K L F +A GI L+ LP+ + +K ++LE+L S
Sbjct: 298 DVIASDHAPHTLEEKRLP---FEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTN 354
Query: 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
PA++ G KGAI G ADLV+ +P+ E+ + ++ K + S + G L G+V+AT
Sbjct: 355 PARIFGLPPKGAIEEGADADLVLVDPDEEWTIRA-EELYSKAKN-SPFEGFELKGRVVAT 412
Query: 426 ISRGNLVYKEGN 437
I RG +VY++G
Sbjct: 413 ILRGKVVYEDGE 424
>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional.
Length = 449
Score = 299 bits (768), Expect = 1e-97
Identities = 154/438 (35%), Positives = 232/438 (52%), Gaps = 37/438 (8%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ +K G I +I + +V+D V+ PG++D H H+ +PGR+ WEG+ +GT
Sbjct: 23 IAVKGGKIAAIGQD-----LGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGT 77
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
+AAA GGITT+I+MPLN P+T+ +++LK DAA+ ++ +D GGLV YN L
Sbjct: 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVS---YNLDRL 134
Query: 126 EALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEM----- 176
L GV+G K F+ G NDF N +G L +P+LVH E
Sbjct: 135 HELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICD 194
Query: 177 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 236
E G E K E + Y+ +RP E AIR +L +AK G LH+
Sbjct: 195 ELGEE--AKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVC 241
Query: 237 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 296
H+S + ++ + A+ G +T E+CPHY ++ + T KC+PPIRD N++ +
Sbjct: 242 HIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGM 300
Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 355
WE L +G ID L SDHSP PE+K GN ++AWGGI+ LQ + V + +K G++L
Sbjct: 301 WEKLFNGEIDCLVSDHSPCPPEMK---AGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSL 357
Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
+ A + G KG IA G AD V +P + + L N+ + +H +S Y+G
Sbjct: 358 PMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNED-LEYRH-KVSPYVG 415
Query: 416 RRLSGKVLATISRGNLVY 433
R + ++ TI RG+++Y
Sbjct: 416 RTIGARITKTILRGDVIY 433
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 229 bits (586), Expect = 2e-71
Identities = 118/393 (30%), Positives = 177/393 (45%), Gaps = 35/393 (8%)
Query: 38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 97
+I+PG+ID+H H +PG T E F SG++AAAAGG+TT++DMP N+ P T + E L K+
Sbjct: 3 LILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKL 61
Query: 98 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 157
A + VD G + G+ + L+ AG K FM S + +
Sbjct: 62 RLAAAKSVVDYGLYFGVTGSE--DLEELDKAPPAGY---KIFMGDSTGDLL------DDE 110
Query: 158 EGL-SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 216
E L + A + HAE E + K R A L
Sbjct: 111 ETLERIFAEGSVLVTFHAEDEDRLRENRKELKGESAHPRI------RDAEAAAVATARAL 164
Query: 217 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 276
+A+ GA LHI H+S + L K +TVE PH+L E+
Sbjct: 165 KLARRH-------GARLHICHVSTP----EELKLIKKAKPGVTVEVTPHHLFLDVEDYDR 213
Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 336
T K PP+R +++ L +AL DG ID+++SDH+P E K + A GI
Sbjct: 214 LGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEK---RKGYPAAPSGIPG 270
Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
++ LP+ + K ++L ++ S PA++ G +KG IA G ADL V + + E
Sbjct: 271 VETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERT 330
Query: 397 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 429
+ H K + + G ++G + TI RG
Sbjct: 331 I-RAEEFHSKAG-WTPFEGFEVTGFPVMTIVRG 361
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 221 bits (565), Expect = 1e-67
Identities = 138/455 (30%), Positives = 221/455 (48%), Gaps = 82/455 (18%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
I +G I +I + ++ +V+D V+ PGL+D+H HL +PG+ + E +G++A
Sbjct: 24 IDDGKIAAIGENIE----AEGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGSRA 79
Query: 68 AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPENA 119
AAAGG TT++ MP N+ P + E ++ +D A++ VDV G G + E
Sbjct: 80 AAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTE-- 136
Query: 120 YNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPL-LVHAEME 177
AL AGV+ +D P+ +A ++ L Y + L L+ A+
Sbjct: 137 -----FGALKEAGVVAFS--------DDGIPVQDARLMRRAL----EYAKALDLLIAQHC 179
Query: 178 KGSERHVKLEDDTLDTRSYSTY--------------LKTRPPSWEEAAI-RELLTVAKDT 222
ED +L T L P EE I R++L A+ T
Sbjct: 180 ---------EDPSL------TEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLL-AEAT 223
Query: 223 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 282
GA +HI H+S A S ++L+ AK G +T E PH+L + E++ D +K
Sbjct: 224 -------GARVHICHVSTAGS-VELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYK 275
Query: 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 342
PP+R ++E L E L DG ID +++DH+P E K + F A GI+ L+ L
Sbjct: 276 VNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKECE---FEAAPFGITGLETALS 332
Query: 343 VTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401
+ ++ K G+ LEQL + PA++ G + G +A G ADLV+++PEAE+ +D +
Sbjct: 333 LLYTTLVKTGLLDLEQLLEKMTINPARILG-LPAGPLAEGEPADLVIFDPEAEWTVDGE- 390
Query: 402 PVHMKHPSI-SAYLGRRLSGKVLATISRGNLVYKE 435
+ ++G +L GKV+ TI G +VY++
Sbjct: 391 --DFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 216 bits (553), Expect = 7e-67
Identities = 121/389 (31%), Positives = 191/389 (49%), Gaps = 54/389 (13%)
Query: 38 VIMPGLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 96
+++PG ID+H HL DPG T ++ F SG++AAAAGG+TT+IDMP N+ P I ++LK
Sbjct: 2 LVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELK 60
Query: 97 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 156
+ AE+ YVD F G+ P + + L+ L +AG+ LK FM F + + + +
Sbjct: 61 IKLAEESSYVDFSFHAGIGPGDVTDE--LKKLFDAGINSLKVFMNYYFGELFDVDDGT-L 117
Query: 157 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 216
+A P++VHAE
Sbjct: 118 MRTFLEIASRGGPVMVHAER--------------------------------------AA 139
Query: 217 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 276
+A++ GA++HI H+S + L+L+ AK G +T E CPH+L +
Sbjct: 140 QLAEEA-------GANVHIAHVSSGEA-LELIKFAKNKGVKVTCEVCPHHLFLDESMLRL 191
Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 336
K PP+R ++E LWE + +G ID ++SDH+P E K + KA G
Sbjct: 192 NGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPG 250
Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
L+ LP+ + G K G++LE L SE PA++ G KG IA+G ADLV+ +P+ E++
Sbjct: 251 LETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWK 310
Query: 397 LDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
+ + + + G ++GK ++T
Sbjct: 311 VTAEE--IESKADWTPFEGMEVTGKPVST 337
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 212 bits (543), Expect = 6e-65
Identities = 131/400 (32%), Positives = 199/400 (49%), Gaps = 28/400 (7%)
Query: 28 TGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST 87
+V+D ++ PGL+D+H HL +PG E SG KAAAAGG TT++ MP N++P
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVI 59
Query: 88 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGIN 146
+ ++L + A+ V V G L + + LL AG +G +
Sbjct: 60 DNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGF-------SDD 112
Query: 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206
P+ +A ++ L A P++VH E + + + + +R L PP
Sbjct: 113 GKPIQDAELLRRALEYAAMLDLPIIVHPE-DPSLAGGGVMNEGKVASRLG---LPGIPPE 168
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 266
E + L +A+ T GA +H HLS A S L+L+ +AK G +T E PH+
Sbjct: 169 AETIMVARDLELAEAT-------GARVHFQHLSTARS-LELIRKAKAKGLPVTAEVTPHH 220
Query: 267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 326
L E + DT K PP+R ++E L EAL DG ID ++SDH+P E K L
Sbjct: 221 LLLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLP--- 277
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 385
F +A GI L+ LP+ W+ K G+ TL L S PAK+ G + G + +G AD
Sbjct: 278 FAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG-LPPGRLEVGAPAD 336
Query: 386 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
LV+++P+AE+ +D + K + + G++L G+VLAT
Sbjct: 337 LVLFDPDAEWIVDEET-FRSK-SKNTPFDGQKLKGRVLAT 374
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 213 bits (545), Expect = 9e-65
Identities = 136/408 (33%), Positives = 200/408 (49%), Gaps = 28/408 (6%)
Query: 31 VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST 90
V+D +++PG ID+H HL DPG E SG+KAAA GG TT+ DMP N+ P +
Sbjct: 29 VIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTP 87
Query: 91 ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA--LLNAGVLGLKSFMCPSGI-ND 147
ETL+ K+ +K VDV +GG V + EA L AG +G S + +
Sbjct: 88 ETLEWKLQRLKKVSLVDVHLYGG-VTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDI 146
Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 207
M A V P+ +HAE V E + L RPP
Sbjct: 147 LSMRRALEYAAIAGV------PIALHAEDPDLIYGGVMHE----GPSAAQLGLPARPPEA 196
Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 267
EE A+ LL +AK G +HI H+S SL+L+++AK+ G IT E PH+L
Sbjct: 197 EEVAVARLLELAKHA-------GCPVHICHISTK-ESLELIVKAKSQGIKITAEVTPHHL 248
Query: 268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 327
S E++ D K PP+R+ ++ L E L DG ID++++DH+P E K F
Sbjct: 249 LLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EF 305
Query: 328 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 387
A GI L+ LP+ K ++L+ L S PA++ G KG + GN AD+
Sbjct: 306 AAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADIT 365
Query: 388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
V++ + E+ ++ + + K + + G L GK +ATI RG +VY++
Sbjct: 366 VFDLKKEWTINAET-FYSK-AKNTPFEGMSLKGKPIATILRGKVVYED 411
>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues.
Length = 447
Score = 212 bits (541), Expect = 8e-64
Identities = 128/442 (28%), Positives = 204/442 (46%), Gaps = 31/442 (7%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
+ I++G I++I + P + +D ++PG ID H HL+ P G + F S
Sbjct: 19 ILIEDGKIVAIGPNLEAPGGVEV---IDATGKYVLPGGIDPHTHLELPFMGTVTADDFES 75
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
GT+AAAAGG TT+ID + + ++ E ++ A+ + +D GF +
Sbjct: 76 GTRAAAAGGTTTIIDFAIPNKGQSL-LEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIE 134
Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS--- 180
L L+ G+ K FM G+ M + + + L ++VHAE G
Sbjct: 135 ELPELVKKGISSFKVFMAYKGLL---MVDDEELLDVLKRAKELGALVMVHAE--NGDVIA 189
Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240
E KL Y +RPP E A + +A+ GA L+IVH+S
Sbjct: 190 ELQKKLLAQGKTGPEYHAL--SRPPEVEAEATARAIRLAELA-------GAPLYIVHVS- 239
Query: 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCAPPIRDAANKEKLW 297
+ + D + A+ G + ETCP YL + ++ C+PP+R ++E LW
Sbjct: 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALW 299
Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLE 356
+ L G + + SDH P K + +F K G+ ++ +P+ WS G G +TLE
Sbjct: 300 DGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLE 359
Query: 357 QLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
+ S PAK+ G KG IA+G+ ADLV+W+P AE + D H + + G
Sbjct: 360 KFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTH-HHN-VDYNIFEG 417
Query: 416 RRLSGKVLATISRGNLVYKEGN 437
++ G + TISRG +V ++G
Sbjct: 418 MKVKGWPVVTISRGKVVVEDGE 439
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 187 bits (476), Expect = 2e-54
Identities = 132/391 (33%), Positives = 195/391 (49%), Gaps = 30/391 (7%)
Query: 4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
R V I G I ++ + D S + +V+D +++PG IDVH H +PG T E + +
Sbjct: 20 RDVRIDGGKITAVGKDLD---GSSSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYT 76
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
G+++AAAGG+TT++D P N+DP T+ E+ K + A ++ VD G GG+ N
Sbjct: 77 GSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVTG----NWD 131
Query: 124 ALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 182
LE+L GV L + FM S + + +E L+ AR VHAE E +
Sbjct: 132 PLESLWERGVFALGEIFMADS-TGGMGI-DEELFEEALAEAARLGVLATVHAEDEDLFDE 189
Query: 183 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242
KL D ++S Y RP + E AA+ L VA +T GA +HI H+S
Sbjct: 190 LAKLLKGDADADAWSAY---RPAAAEAAAVERALEVASET-------GARIHIAHIS-TP 238
Query: 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
+D IT E PH+L S + T K PP+R +E LWE L D
Sbjct: 239 EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLND 293
Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 362
G ID+++SDH+P E K D A G+ ++ +LP+ + RK + LE++
Sbjct: 294 GTIDVVASDHAPHTREEKDAD---IWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVT 350
Query: 363 SERPAKLAGQVSKGAIAIGNHADLVVWEPEA 393
+ PA++ G KG IA G ADLV+ +P+A
Sbjct: 351 AANPARIFGLDGKGRIAEGYDADLVLVDPDA 381
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 186 bits (474), Expect = 7e-54
Identities = 121/438 (27%), Positives = 196/438 (44%), Gaps = 68/438 (15%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST 87
+V+D +MPG ID H H++ P G + F +GT+AAA GG TT+ID L
Sbjct: 38 EVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQP---- 93
Query: 88 ISTETLKLKVDA----AEKRIYVDVGFWGGL--VPENAYNASALEALLNAGVLGLKSFMC 141
++L+ ++A A + +D GF + E + + L+ G+ K FM
Sbjct: 94 -KGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDE--MPELVEEGITSFKLFM- 149
Query: 142 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE------------MEKGSERHVKLEDD 189
M + + L A +VHAE + +G
Sbjct: 150 --AYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEG---------- 197
Query: 190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 249
T L +RPP E A + +A+ GA L+IVH+S +L+ +
Sbjct: 198 --KTGPEYHAL-SRPPEVEGEATNRAIMLAELA-------GAPLYIVHVS-CKEALEAIR 246
Query: 250 EAKTNGDSITVETCPHYLAFSAEEI--PDGDT--RFKCAPPIRDAANKEKLWEALMDGHI 305
A+ G + ETCP YL E PD ++ +PP+RD +++ LW L DG +
Sbjct: 247 RARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDL 306
Query: 306 DMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWS 363
++++DH P + K L G+F K G ++ +P+ +S G G +TL + S
Sbjct: 307 QVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTS 366
Query: 364 ERPAKLAG---QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRL 418
PAK+ G + KG IA+G AD+V+W+P A + H ++ + Y G +
Sbjct: 367 TNPAKIFGLYPR--KGTIAVGADADIVIWDPNATKTISAS----TLHSNVDYNPYEGFEV 420
Query: 419 SGKVLATISRGNLVYKEG 436
+G + T+SRG +V ++G
Sbjct: 421 TGWPVTTLSRGEVVVEDG 438
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 185 bits (472), Expect = 9e-54
Identities = 133/466 (28%), Positives = 220/466 (47%), Gaps = 72/466 (15%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
+ + I++G I +I + G+V+D ++PG+ID H +PG E
Sbjct: 22 RADIGIRDGRIAAIGD----LSGASAGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLE 77
Query: 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
+G++AA GG+T + +MP N++P T + E L K+ A R++ D F+ G +NA
Sbjct: 78 TGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNADEL 136
Query: 123 SALEALLNAGVLGLKSFMCPSG----INDFPMTNASHIKEGL-SVLARYKRPLLVHAEME 177
+ LE L G G+K FM S + D EGL +L +R H+E E
Sbjct: 137 AELERL--PGCAGIKVFMGSSTGDLLVED---------DEGLRRILRNGRRRAAFHSEDE 185
Query: 178 K--GSERHVKLEDDTLDTRSYSTYLKTRPPSW--EEAAI---RELLTVAKDTRTDGPAEG 230
+ +++E D S++ P W EEAA+ R L+ +A++T G
Sbjct: 186 YRLRERKGLRVEGD------PSSH-----PVWRDEEAALLATRRLVRLARET-------G 227
Query: 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-DTRFKCAPPIRD 289
+H++H+S A +D L + K D TVE PH+L +A E + T + PPIRD
Sbjct: 228 RRIHVLHVSTA-EEIDFLADHK---DVATVEVTPHHLTLAAPECYERLGTLAQMNPPIRD 283
Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW----GGISSLQFVLPVTW 345
A +++ LW + G +D+L SDH+P E K K + G++ +Q ++P+
Sbjct: 284 ARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK-------AKPYPASPSGMTGVQTLVPIML 336
Query: 346 SY---GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 402
+ GR ++LE+ S PA++ G KG IA+G AD + + + + N+
Sbjct: 337 DHVNAGR---LSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNE-- 391
Query: 403 VHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
+ + Y G+ ++G + TI RG V +G G P+
Sbjct: 392 -WIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPV 436
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 177 bits (451), Expect = 1e-50
Identities = 119/422 (28%), Positives = 196/422 (46%), Gaps = 34/422 (8%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM--PLNSDP 85
+V+D ++PG IDVH HL+ P G + F +GTKAAAAGG TT+ID P +
Sbjct: 40 EVIDATGKYVLPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGES 99
Query: 86 STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 145
T + ET K AE + +D GF + N + + G+ SF
Sbjct: 100 LTEALETWHEK---AEGKSVIDYGFHMMITDWNDHVLEEHIPEVVEE--GITSFKVFMAY 154
Query: 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLK 201
+ M + + E L L VHAE + + R + + + S
Sbjct: 155 KNLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALS---- 210
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 261
RPP E A+ + +A D P L++VH+S A + +D + EA+ G + E
Sbjct: 211 -RPPESEAEAVARAIALAA--LADAP-----LYVVHVSTADA-VDEIAEAREKGQPVYGE 261
Query: 262 TCPHYLAFSAE--EIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVP 317
TCP YL + P + ++ C+PP+R+ +++ LW AL G + + SDH P
Sbjct: 262 TCPQYLVLDDTAYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFA 321
Query: 318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SK 375
+ K + + +F K G ++ + + + G G +TLE+ S PAK+ K
Sbjct: 322 QKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVAKGRITLEKFVELTSTNPAKIFNMYPQK 381
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
G IA+G+ AD+V+W+P + + H + + + G ++ G V++ +SRG +V ++
Sbjct: 382 GTIAVGSDADIVIWDPNRTTVISAET--HHDNADYNPFEGFKVQGAVVSVLSRGRVVVED 439
Query: 436 GN 437
G
Sbjct: 440 GQ 441
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 167 bits (426), Expect = 3e-47
Identities = 123/457 (26%), Positives = 198/457 (43%), Gaps = 61/457 (13%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V +++G I++I E + V+D ++PG+ID H +PG E + +
Sbjct: 24 VLVEDGKIVAIAPEIS---ATAVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFTAS 80
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
+A A GG+T+ ++MP N+ P T + L K+ A ++ V+ GF+ G P+N L
Sbjct: 81 RACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPDN------L 133
Query: 126 EALLNA-GVLGLKSFMCPSGINDFPMTNASH-----IKEGL--SVLARYKRPLLVHAEME 177
LL A G+K FM +SH +E + A R + VHAE +
Sbjct: 134 PELLTANPTCGIKIFM-----------GSSHGPLLVDEEAALERIFAEGTRLIAVHAEDQ 182
Query: 178 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI---RELLTVAKDTRTDGPAEGAHLH 234
D +S EEAA+ R L ++K + LH
Sbjct: 183 ARIRARRAEFAGISDPADHSQIQD------EEAALLATRLALKLSKKYQR-------RLH 229
Query: 235 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 294
I+HLS A +LL + K + +T E P +L + + T + PP+R + E
Sbjct: 230 ILHLSTAIE-AELLRQDKPS--WVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNE 286
Query: 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVT 354
LW+AL DG ID +++DH+P E K + + G+ ++ LP+ + + T
Sbjct: 287 ALWQALRDGVIDFIATDHAPHTLEEKAQP---YPNSPSGMPGVETSLPLMLTAAMRGKCT 343
Query: 355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH----MKHPSI 410
+ Q+ W S A+ G +KG IA G ADLV+ +L+ PV +
Sbjct: 344 VAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL------VDLNTYRPVRREELLTKCGW 397
Query: 411 SAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
S + G L+G + TI G +V+ G G +
Sbjct: 398 SPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQAL 434
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 161 bits (409), Expect = 1e-44
Identities = 123/465 (26%), Positives = 188/465 (40%), Gaps = 69/465 (14%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V I+ G I I S V+D ++PG+ID H +PG T S +
Sbjct: 22 VLIENGRIAKIASSIS---AKSADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASES 78
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
+AA AGGIT+ ++MP N++P T + E L+ K A +R + F+ G + N +
Sbjct: 79 RAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFG-ATND--NLDEI 134
Query: 126 EALLNAGVLGLKSFMCPSGIN---DFPMTNASHIKEGLSVLARYKR----PLLVHAEME- 177
+ L V G+K FM S N D P L R R + H E
Sbjct: 135 KRLDPKRVCGVKVFMGASTGNMLVDNP-----------ETLERIFRDAPTLIATHCEDTP 183
Query: 178 ---KGSERHVKLEDDTLDT------RSYSTYLKTRPPSWEEAAIR------ELLTVAKDT 222
++ + D + RS EA + L AK
Sbjct: 184 TIKANLAKYKEKYGDDIPAEMHPLIRS------------AEACYKSSSLAVSL---AKKH 228
Query: 223 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 282
G LH++H+S A L L IT E C H+L F + K
Sbjct: 229 -------GTRLHVLHISTAKE-LSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIK 280
Query: 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 342
C P I+ A+++E L +AL D ID++++DH+P E K +G + +A G+ +Q LP
Sbjct: 281 CNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEK---QGPYFQAPSGLPLVQHALP 337
Query: 343 VTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 402
+ ++LE++ S PA L +G I G ADLV+ + + + + +
Sbjct: 338 ALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKE-N 396
Query: 403 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
+ K S + GR +V T G LVY G + G +
Sbjct: 397 ILYK-CGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVESCRGQRL 440
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 156 bits (396), Expect = 1e-42
Identities = 125/451 (27%), Positives = 201/451 (44%), Gaps = 57/451 (12%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS 86
+ +D +++PG +D H H+D P G + F +GT +AA GG TT+I
Sbjct: 43 REIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQ 102
Query: 87 TISTETLKLKVDAAEKRIYVDVGFWGGLV---PENAYNASALEALLNAGVLGLKSFMCPS 143
++ E ++ A + +D F L+ P L AL+ G K FM
Sbjct: 103 SLR-EAVEDYHRRAAGKAVIDYAF--HLIVADPTEEVLTEELPALIAQGYTSFKVFMTYD 159
Query: 144 G--INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST--- 198
++D + + L+V R+ ++VHAE + + L +
Sbjct: 160 DLKLDDRQIL------DVLAVARRHGAMVMVHAE----NHDMIAWLTKRLLAAGLTAPKY 209
Query: 199 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSI 258
+ +RP E A + +A+ D P + IVH+S + + + A+ G I
Sbjct: 210 HAISRPMLAEREATHRAIALAE--LVDVP-----ILIVHVSGREA-AEQIRRARGRGLKI 261
Query: 259 TVETCPHYLAFSAEEIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 314
ETCP YL +AE++ D ++ C+PP RD AN+E +W L DG ++ SSDH+P
Sbjct: 262 FAETCPQYLFLTAEDL-DRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAP 320
Query: 315 ---TVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAK 368
+ KL +F GI ++ LP+ +S G G ++L + + S PAK
Sbjct: 321 FRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAK 380
Query: 369 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLAT 425
L G KGAIAIG AD+ +W+P+ E + N H + + Y G R++G +
Sbjct: 381 LYGLYPRKGAIAIGADADIAIWDPDREVTITNA----DLHHAADYTPYEGMRVTGWPVTV 436
Query: 426 ISRGNLVYKEGN-HAPA------ACGSPILA 449
+SRG +V ++G A A P A
Sbjct: 437 LSRGRVVVEDGELVAERGSGQFLARSLPDRA 467
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 147 bits (373), Expect = 5e-40
Identities = 118/431 (27%), Positives = 188/431 (43%), Gaps = 60/431 (13%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ I+ G I I R+ K +V+ +I+PGLIDVH HL D + E SGT
Sbjct: 17 IGIENGRISKI-----SLRDLKGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGT 71
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
KAA GGIT + DMP N+ P + +T + ++ AEK+ Y D L+ N A +
Sbjct: 72 KAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADY-ALNFLIAGNCEKAEEI 129
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
+A K FM S T + A + VHAE
Sbjct: 130 KADFY------KIFMGAS-------TGGIFSENFEVDYACAPGIVSVHAE---------- 166
Query: 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245
D + + RPP E AI L K + LHI H+S L
Sbjct: 167 ------DPELIREFPE-RPPEAEVVAIERALEAGKKLKKP-------LHICHISTK-DGL 211
Query: 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
L++++ N ++ E PH+L + ++ K PP+R +++ LWE I
Sbjct: 212 KLILKS--NLPWVSFEVTPHHLFLTRKDYERNP-LLKVYPPLRSEEDRKALWENF--SKI 266
Query: 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 365
+++SDH+P E K + G GI L+ +P+ K ++L + +
Sbjct: 267 PIIASDHAPHTLEDK--EAGA-----AGIPGLETEVPLLLDAANKGMISLFDIVEKMHDN 319
Query: 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
PA++ G + G I GN+A+ V++ + E+ + + ++ K + Y G +L GKV+ T
Sbjct: 320 PARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAEE-LYTK-AGWTPYEGFKLKGKVIMT 376
Query: 426 ISRGNLVYKEG 436
I RG +V ++
Sbjct: 377 ILRGEVVMEDD 387
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 137 bits (347), Expect = 3e-36
Identities = 106/405 (26%), Positives = 175/405 (43%), Gaps = 56/405 (13%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
+E+++G I SI ++D K + I+P D+H H PG TE E F +G
Sbjct: 17 EIEVEDGKIKSI--KKDAGNIGKK-----ELKGAILPAATDIHVHFRTPGETEKEDFSTG 69
Query: 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
T +A GG T ++DMP N++ K+ + YVD + NA
Sbjct: 70 TLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----- 123
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG-LSVLARYKRPLLVHAEMEKGSERH 183
+L+ +GLK +M + TN + I+ G + + P+ HAE+ + +H
Sbjct: 124 --LILDERSIGLKVYMGGT-----TNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKH 176
Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 243
++++ + RP E A++ + + T+ I H+S
Sbjct: 177 ------QFESKNLRDHDLARPIECEIKAVKYVKNLDLKTK----------IIAHVSSIDV 220
Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
L E PH+L +++P G + K PP+RD +E+L E + G
Sbjct: 221 IGRFLREVT-----------PHHL-LLNDDMPLG-SYGKVNPPLRDRWTQERLLEEYISG 267
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
D+LSSDH+P E D+ F A GI ++ +P+ + +K + L+ L
Sbjct: 268 RFDILSSDHAPHTEE----DKQEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAI 323
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 408
ERPA L G + KG I G AD + ++ ++ ND +H K P
Sbjct: 324 ERPASLFG-IKKGKIEEGYDADFMAFDFTNIKKI-NDKRLHSKCP 366
>gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional.
Length = 392
Score = 122 bits (308), Expect = 6e-31
Identities = 110/442 (24%), Positives = 175/442 (39%), Gaps = 85/442 (19%)
Query: 10 EGNIISIVSEEDWPRNSKTGQ-----VVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPS 63
I I D R K + +D + +I+PG ID+H HL + E S
Sbjct: 12 GKEIKEICINFD--RRIKEIKSRCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVAS 69
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
GT AA GG+T + DMP N+ P + E + K+ E VD + G V ++
Sbjct: 70 GTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAELEYYSRVDYFVYSG-VTKD----- 122
Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
E + + G K F P + +E VL + ++ ++H E+
Sbjct: 123 -PEKVDKLPIAGYKIF--PEDLER---------EETFRVLLKSRKLKILHPEV------P 164
Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 243
+ L+ + K R W E A + + ++HI H S+ +
Sbjct: 165 LALKSNR----------KLRRNCWYEIAALYYVK-----------DYQNVHITHASNPRT 203
Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
+ AK G TV+ PH+L + E D K PPIRD + L +AL +
Sbjct: 204 ----VRLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE- 252
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
+D ++SDH+P KL + GI++L F P ++ K +++++ S
Sbjct: 253 -VDAIASDHAPHSSFEKLQ---PYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELIS 308
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVV-----WEPEAEFELDNDHPVHMKHPSISAYLGRRL 418
PA++ G + G I G A+ V W ++ + P+ G L
Sbjct: 309 TNPARILG-IPYGEIKEGYRANFTVIQFEDWRYSTKYSKVIETPL----------DGFEL 357
Query: 419 SGKVLATISRGNLVYKEGNHAP 440
V ATI +G L Y EG P
Sbjct: 358 KASVYATIVQGKLAYLEGEVFP 379
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 111 bits (279), Expect = 9e-27
Identities = 110/442 (24%), Positives = 195/442 (44%), Gaps = 60/442 (13%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
+ G I +I P + +D ++ PGL+D+ A L +PG S A
Sbjct: 25 VAAGKIAAIGQA---PAGFNADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESEMAA 81
Query: 68 AAAGGITTLI-----DMPLNSDPSTISTETLKLKVDAAEK-RIY----VDVGFWGGLVPE 117
A AGG+T+L+ D L+ +P + E LK + + +Y + VG G ++ E
Sbjct: 82 AVAGGVTSLVCPPDTDPVLD-EPGLV--EMLKFRARNLNQAHVYPLGALTVGLKGEVLTE 138
Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-----RPLLV 172
L AG +G + P+ + + L + + RPL
Sbjct: 139 MV-------ELTEAGCVGFSQ-------ANVPVVDTQVLLRALQYASTFGFTVWLRPLDA 184
Query: 173 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232
+ +G + +R L P + E A+ + + + T GA
Sbjct: 185 F--LGRGGVAA----SGAVASR---LGLSGVPVAAETIALHTIFELMRVT-------GAR 228
Query: 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 292
+H+ LS A+ + L+ AK G +T + +++ +I D++F+ PP+R +
Sbjct: 229 VHLARLSSAAG-VALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRD 287
Query: 293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 352
+E + AL DG ID + SDH+P + KLL F +A G + L+ +LP+T + +
Sbjct: 288 REAIRAALADGTIDAICSDHTPVDDDEKLLP---FAEATPGATGLELLLPLTLKWADEAK 344
Query: 353 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-S 411
V L + + + PA++ G + G +A G ADL V++P+A + ++ P +K +
Sbjct: 345 VPLARALARITSAPARVLG-LPAGRLAEGAPADLCVFDPDAHWRVE---PRALKSQGKNT 400
Query: 412 AYLGRRLSGKVLATISRGNLVY 433
+LG L G+V AT+ G + +
Sbjct: 401 PFLGYELPGRVRATLVAGQVAF 422
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 110 bits (276), Expect = 3e-26
Identities = 114/445 (25%), Positives = 192/445 (43%), Gaps = 39/445 (8%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
V +++G I+++ P + + V+D +MPG ID H HL P G + F S
Sbjct: 25 VYVEDGIIVAVAPNLKVPDDVR---VIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFS 81
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTIST-ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
G AA AGG T ID + + + ++ E + K AEK +D GF + + +
Sbjct: 82 GQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKK---AEKSC-MDYGFHMAITKWDDTVS 137
Query: 123 SALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----ME 177
+E L+ G+ K FM G M + EG +VHAE +
Sbjct: 138 RDMETLVKEKGINSFKFFMAYKGS---LMVTDELLLEGFKRCKSLGALAMVHAENGDAVF 194
Query: 178 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 237
+G +R ++L + + S RPP E A + +AK T L++VH
Sbjct: 195 EGQKRMIELGITGPEGHALS-----RPPLLEGEATARAIRLAKFVNTP-------LYVVH 242
Query: 238 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC----APPIRDAANK 293
+ + +++ + A+ +G + E L ++ D D +PPIR A +
Sbjct: 243 VM-SIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHG 301
Query: 294 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG- 352
+ L AL G + ++ +DH P K + +F K G++ ++ + + W + G
Sbjct: 302 KALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQ 361
Query: 353 VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 411
++ S AK+ KGAI G+ AD+++ P + F + H +
Sbjct: 362 ISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAK--THHSRIDTN 419
Query: 412 AYLGRRLSGKVLATISRGNLVYKEG 436
Y GRR GKV TIS+G +V++ G
Sbjct: 420 VYEGRRGKGKVEVTISQGRVVWENG 444
>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 102 bits (255), Expect = 1e-23
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
SL+LL + K+ G+ + E H+L + +T K PP+R ++ L EAL +G
Sbjct: 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEG 267
Query: 304 HIDMLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 360
ID L+S HS K L DE F GI S+ + ++Y K G +T +L+
Sbjct: 268 KIDFLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSR 322
Query: 361 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 420
+ S PA+ G + G I +G ADLV+++P +D+ + S Y G L G
Sbjct: 323 FTSYNPAQFLGL-NSGEIEVGKEADLVLFDPNESTIIDD---------NFSLYSGDELYG 372
Query: 421 KVLATISRGNLVYK 434
K+ A I +G L +
Sbjct: 373 KIEAVIIKGKLYLE 386
>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional.
Length = 418
Score = 101 bits (255), Expect = 1e-23
Identities = 109/423 (25%), Positives = 187/423 (44%), Gaps = 33/423 (7%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V I++G I +I E Q++D ++ PGL+D+++H +PG E E S
Sbjct: 24 VLIEDGKIQAI--EPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLASLA 81
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SA 124
AAAAGG T + +P ++ P + TL A++ V + FWG L +
Sbjct: 82 AAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTE 140
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
L L AGV+G + P+ N + ++ L L +P+ + + V
Sbjct: 141 LAELAAAGVVGFT--------DGQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGV 192
Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
E + L P S E A+ LL + T +H++ +S A S
Sbjct: 193 MREGLL----ALRLGLPGDPASAETTALAALLELVAAIGTP-------VHLMRISTARS- 240
Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
++L+ +AK G IT T +L E + D + PP+ + ++++ L E + G
Sbjct: 241 VELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGV 300
Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWS 363
ID ++ DH+P E K + F +A G L+ LP+ W + ++ QL S
Sbjct: 301 IDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALS 357
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKV 422
PA+ GQ ++A G A+L++++P+ + + + S + +LG+ L G+V
Sbjct: 358 TNPARCLGQEPP-SLAPGQPAELILFDPQKTWTVSAQ---TLHSLSRNTPWLGQTLKGRV 413
Query: 423 LAT 425
L T
Sbjct: 414 LQT 416
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 97.1 bits (242), Expect = 3e-22
Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 64/283 (22%)
Query: 38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 97
+ +PGLIDVH HL +PG T E F SGTKAA AGG T + MP N++PS + +LKL
Sbjct: 3 IRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQ 61
Query: 98 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 157
A+ + D F G NA L + +GLK ++ N+ T ++ I
Sbjct: 62 SLAQAKARCDYAFSIGATSTNAATVGE----LASEAVGLKFYL-----NE---TFSTLIL 109
Query: 158 EGLSVLARY------KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211
+ ++ A + +P++ HA+ S L AA
Sbjct: 110 DKITAWASHFNAWPSTKPIVTHAK---------------------SQTL---------AA 139
Query: 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 271
+ LL + R +HI H+S ++L+ AK G +T E PH+L S
Sbjct: 140 V--LLLASLHNR--------SIHICHVSSKEE-INLIRLAKARGLKVTCEVSPHHLFLSQ 188
Query: 272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 314
+++P G +++ P + ++E LWE L +ID ++DH+P
Sbjct: 189 DDLPRG--QYEVRPFLPTREDQEALWENL--DYIDCFATDHAP 227
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 70.4 bits (173), Expect = 4e-13
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 9/206 (4%)
Query: 230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 289
H +S A S + L AK G +T ++L+ + +I + T FK +PP+R
Sbjct: 231 RGRYHAAQISCAES-AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRT 289
Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349
++ + EA+ G ID++ S H P + K L F +A G L+ +L
Sbjct: 290 EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLP---FSEAAAGAIGLETLLAAALRLYH 346
Query: 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 409
V L +L S RPA++ G + G + G AD++V + + + +D P +K S
Sbjct: 347 NGEVPLLRLIEALSTRPAEIFG-LPAGTLKPGAPADIIVIDLDEPWVVD---PEDLKSRS 402
Query: 410 I-SAYLGRRLSGKVLATISRGNLVYK 434
+ + R G+V+ TI G VY+
Sbjct: 403 KNTPFEEARFQGRVVRTIVAGKTVYE 428
Score = 57.0 bits (138), Expect = 7e-09
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 31 VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 85
+VD + PGL+D + +PG E S ++AAAAGG+T++I MP ++DP
Sbjct: 50 IVDCAGKAVAPGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDP 103
>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 66
Score = 60.4 bits (147), Expect = 6e-12
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 8 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
I++G I +I ++ +V+D ++PGLID+H HL E +G A
Sbjct: 3 IEDGKIAAIGGDDLPDA---EAEVIDAEGKYVLPGLIDMHVHLG--EEPGRETLETGAAA 57
Query: 68 AAAGGITTL 76
A AGG+TT+
Sbjct: 58 ALAGGVTTV 66
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 60.7 bits (147), Expect = 3e-10
Identities = 69/362 (19%), Positives = 114/362 (31%), Gaps = 64/362 (17%)
Query: 38 VIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 94
+++PGLID H HL+ P G +E +G KA G TT++D P +++ S + +
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 95 LKVDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 149
+ AA K + + G A E L +
Sbjct: 61 EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGA--DLIKVIE--DGGKTA 116
Query: 150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209
L LA + P + H ++ E + ++ S E
Sbjct: 117 KAIDGV----LPALAPHDPPTVSHEGLKNEVE-LAEETEEAEKLGLLVHIH-AAEASGEV 170
Query: 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 269
AI + + H +HL D + L++ +G +
Sbjct: 171 NAILGGVDLLA-------------HCLHLDDEAI---ELLKEAGSGIAHCP--------L 206
Query: 270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 329
S E I RF + I L S + +L D+G +
Sbjct: 207 SNESILHRGGRF--------------SLMSGDAQGIGELGSGGARLA---RLADKGGVVG 249
Query: 330 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 388
+ L Y G++ + + PAK G G+I +G ADLVV
Sbjct: 250 LGTDGAGLNGKD----FYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVV 305
Query: 389 WE 390
+
Sbjct: 306 VD 307
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 59.7 bits (144), Expect = 5e-10
Identities = 56/309 (18%), Positives = 87/309 (28%), Gaps = 89/309 (28%)
Query: 43 LIDVHAHLDDPGRTEWEGFP------------------SGTKAAAAGGITTLIDMPLNSD 84
ID H HLD +A AGG+TT++DM ++
Sbjct: 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STP 59
Query: 85 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS--------ALEALLNAGVLGL 136
P T + ++ +AA + V G+ A L L G +GL
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 137 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 196
K + + ++ L + P+++HA
Sbjct: 120 KLAGPYT----ATGLSDESLRRVLEEARKLGLPVVIHAG--------------------- 154
Query: 197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNG 255
A+ +L+ G + I H+S L+LL EA
Sbjct: 155 -------ELPDPTRALEDLV--------ALLRLGGRVVIGHVSHLDPELLELLKEAG--- 196
Query: 256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315
+++E CP RD E L L G L +D P
Sbjct: 197 --VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238
Query: 316 VPELKLLDE 324
LL
Sbjct: 239 PLGTDLLAL 247
>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 304
Score = 54.5 bits (130), Expect = 4e-08
Identities = 67/363 (18%), Positives = 104/363 (28%), Gaps = 67/363 (18%)
Query: 33 DYGEAVIMPGLIDVHAHLDDPGRTE-----WEGFPSGTKAAAAGGITTLIDMPLNSDPST 87
D +++PGL+D+H H ++E +G A A G+T+ +
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 88 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYN-ASALEALLNAGVLGLKSFMCPSGIN 146
R+ V V G + N AL+ L+ + S ++
Sbjct: 61 T--------------RLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLD 106
Query: 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206
GL L R H + L
Sbjct: 107 G----------PGLEALLRE-----AKKAGLILLVGHAPADLGDGAVEKGLDALFLLALG 151
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 266
E A L P G LH++ + L+ +
Sbjct: 152 HEVAEDLHLA------EILDPGAGLGLHVIAAAADLLLEGLVA-------AHAGGLAVVP 198
Query: 267 LAFSAEEIPDGDTRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 325
L + FK PP+R ++E L E L G L SDH+P P
Sbjct: 199 LELLLRDAAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSP-------- 250
Query: 326 NFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHA 384
+ +L G+T E+ + PA+L G G + +G A
Sbjct: 251 ---------AGPGDLLEAALFLAALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRA 301
Query: 385 DLV 387
DLV
Sbjct: 302 DLV 304
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 49.6 bits (119), Expect = 2e-06
Identities = 92/445 (20%), Positives = 146/445 (32%), Gaps = 148/445 (33%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V I++G I +I +V+D V+ PG IDVH H D G+ W+
Sbjct: 22 VGIRDGRIAAIGPILSTSAR----EVIDAAGLVVAPGFIDVHTHYD--GQVFWD---PDL 72
Query: 66 KAAAAGGITTLIDM-------PLNSD-----PSTISTETLKLK------------VDAAE 101
+ ++ G+TT++ P N D + + +DA E
Sbjct: 73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALE 132
Query: 102 KRIY-VDVGFWGGLVPENAYNASAL--------------------EALLNAGVLGLKSFM 140
R V+V LV A + + EAL AG LG+
Sbjct: 133 ARPPAVNVAA---LVGHAALRRAVMGLDAREATEEELAKMRELLREAL-EAGALGI---- 184
Query: 141 CPSGINDFPMTNASHIKEGL----SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 196
L V ARY H V+ E D++
Sbjct: 185 ---STGLAYAPRLYAGTAELVALARVAARYGGVYQTH----------VRYEGDSILE--- 228
Query: 197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--------SLDLL 248
A+ ELL + ++T G +HI HL A + L L+
Sbjct: 229 --------------ALDELLRLGRET-------GRPVHISHLKSAGAPNWGKIDRLLALI 267
Query: 249 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 308
A+ G +T + P Y A S ++ +M + M
Sbjct: 268 EAARAEGLQVTADVYP-YGAGSEDD-----------------------VRRIMAHPVVMG 303
Query: 309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 368
SD +++G + VL + RK ++LE+ + PA+
Sbjct: 304 GSD--------GGALGKPHPRSYGDFT---RVLGH-YVRERK-LLSLEEAVRKMTGLPAR 350
Query: 369 LAGQVSKGAIAIGNHADLVVWEPEA 393
+ G +G IA G AD+VV++P+
Sbjct: 351 VFGLADRGRIAPGYRADIVVFDPDT 375
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 46.3 bits (110), Expect = 2e-05
Identities = 79/470 (16%), Positives = 130/470 (27%), Gaps = 114/470 (24%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------------ 52
+ I++G I++I + + +V+D +++PG ++ H HLD
Sbjct: 24 DLVIEDGKIVAIGANAE---GPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPL 80
Query: 53 ---PGRTEWEGFPSGTKA-------------AAAGGITTLIDMPLNSDPS--TISTETLK 94
R W G TT S L+
Sbjct: 81 LEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALE 140
Query: 95 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG-LKSFMCPSGINDFPMTNA 153
+ + A + DV F + E L A LG + P
Sbjct: 141 VGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLGRDVVGLAPHFPYTVSPELL 200
Query: 154 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 213
+ E + +Y P+ +H +TLD E R
Sbjct: 201 ESLDE---LARKYGLPVHIHL-------------AETLDEVERVL---------EPYGAR 235
Query: 214 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP---HYLAFS 270
+ + H VHLS+ +L + A++ +V CP L
Sbjct: 236 PVERLDLLGLLGSHT--LLAHCVHLSEE----ELELLAESG---ASVVHCPRSNLKLG-- 284
Query: 271 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 330
G L G L +D + + L +L E ++
Sbjct: 285 -----SGIAPV---------------RRLLERGVNVALGTDGAASNNVLDMLRE---MRT 321
Query: 331 WGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 389
+ L L G TL AK G G++ +G ADLVV
Sbjct: 322 ADLLQKLAGGLLAAQLPGEALDMATL---------GGAKALGLDDIGSLEVGKKADLVV- 371
Query: 390 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
+ H ++ S + V + G LV ++G
Sbjct: 372 -----LDASAPHLAPLRPVSRLVFAAGGK--DVDRVLVDGRLVMEDGRLL 414
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 45.1 bits (107), Expect = 6e-05
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 13/107 (12%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWE- 59
AV I++G I+++ EE +V+D + PGLID H HL E+E
Sbjct: 28 DGAVLIEDGKIVAVGPEE--IDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFEL 85
Query: 60 ---GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 103
G AA GGI L +T LK KR
Sbjct: 86 REAGASYTEILAAGGGILPLD-----RGFTTARDGGLKATALPRLKR 127
>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed.
Length = 569
Score = 45.1 bits (107), Expect = 6e-05
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--E 91
E +I PG IDVH H D + A A GITT++ L S
Sbjct: 126 AEGLIATPGAIDVHVHFDSAQLVD---------HALASGITTMLGGGLGPTVGIDSGGPF 176
Query: 92 TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 137
+ AAE V+ GF G N+ +AL + AG GLK
Sbjct: 177 NTGRMLQAAEA-WPVNFGFLG---RGNSSKPAALIEQVEAGACGLK 218
>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 43.6 bits (104), Expect = 1e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
A+ I++G I+ + E D P + +V+D G ++ PGLID H HL
Sbjct: 30 AIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLIDCHTHL 74
Score = 29.8 bits (68), Expect = 3.0
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 18/62 (29%)
Query: 374 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVLATISRGNLV 432
+ G++ +G ADLV+W D P + Y G V + G +V
Sbjct: 362 THGSLEVGKKADLVIW--------DAPSPAEL------PYHFGVNP---VETVVKNGEVV 404
Query: 433 YK 434
Sbjct: 405 VD 406
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall
recycling.
Length = 374
Score = 42.6 bits (101), Expect = 2e-04
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
AV +++G I++I E++ + +++D ++PG ID+H H
Sbjct: 18 AVLVEDGKIVAIGPEDE---LEEADEIIDLKGQYLVPGFIDIHIH 59
Score = 29.5 bits (67), Expect = 3.6
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 352 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 405
G LE+ S PAKL G KG++ G ADLVV LD+D V
Sbjct: 323 GCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVV--------LDDDLNVKA 369
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate
hydrolase (Imidazolone-5PH) catalyzes the third step in
the histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 42.2 bits (100), Expect = 4e-04
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPG--RTEWE--- 59
+ I++G I ++ P + +D G + PGL+D H HL G E+
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60
Query: 60 -GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 94
G AA GGI + + + + L+
Sbjct: 61 AGASYEEILAAGGGILSTVRATRAASEDELFASALR 96
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 41.9 bits (99), Expect = 6e-04
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 5 AVEIKEGNIISIVSEEDW-PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
AV IK+G I+++ S+ + +V+D ++PG +D H HL G + E
Sbjct: 26 AVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELNLD 85
Query: 64 GTKAAAA 70
G ++
Sbjct: 86 GVRSLDD 92
Score = 30.4 bits (69), Expect = 2.4
Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 50/231 (21%)
Query: 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 269
A+ L + R +G I H S D + G + P++L
Sbjct: 345 GAVDAALDAFEKARKKNGLKGLRHRIEHAELV--SPDQIERFAKLG--VIASVQPNFLFS 400
Query: 270 SAEEIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 327
E D G+ R + P R + G D + P
Sbjct: 401 DGEWYVDRLGEERASRSYPFRSLLKA----GVPLAGGSDAPVEPYDP------------- 443
Query: 328 LKAWGGISSLQFVLPVTWSYGRKYG---VTLEQLASWWSERPAKLAGQVS-KGAIAIGNH 383
W GI + V T +T E+ ++E A +G KG++ G
Sbjct: 444 ---WLGIYAA--VTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKL 498
Query: 384 ADLVVWE-PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433
AD V + + D+ KV+ TI G +VY
Sbjct: 499 ADFAVLDRDPFTVDPDSIKDT-----------------KVVLTIVAGKVVY 532
>gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional.
Length = 443
Score = 41.8 bits (99), Expect = 6e-04
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 28/103 (27%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DD--- 52
AV I++G I++I+ + + V+ + V++PGLI+ H H DD
Sbjct: 30 AVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADDLPL 89
Query: 53 ---------PGRTEW--EGF-PSGTKAAAA----GGITTLIDM 79
P W E F GT A A GG T DM
Sbjct: 90 MTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDM 132
>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria.
Length = 325
Score = 41.1 bits (97), Expect = 7e-04
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 29/106 (27%)
Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
E G +D+LSSD+ P +SL L + G +L +
Sbjct: 241 ELAAHGLLDILSSDYVP--------------------ASL---LHAAFRLADLGGWSLPE 277
Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPV 403
+ S PA+ G +G+IA G ADL++ + + PV
Sbjct: 278 AVALVSANPARAVGLTDRGSIAPGKRADLIL------VDDMDGVPV 317
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal
ion (or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 30 QVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAAG---------GITTLID 78
QV+D G +MPGLID H HL D P + A G TT+ D
Sbjct: 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRD 61
Query: 79 M 79
Sbjct: 62 A 62
>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 338
Score = 39.6 bits (93), Expect = 0.002
Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 36/182 (19%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG----T 65
E I+ V Q+VD G + PG ID+H H+ ++G
Sbjct: 5 ENGKIAAVGAALAA--PAATQIVDAGGCYVSPGWIDLHVHV-------YQGGTRYGDRPD 55
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKV-DAAEKRIY--VDVGFWGGLVPENAYN- 121
G+TT++D + + + V + + R+Y +++ G + + +
Sbjct: 56 MIGVKSGVTTVVDA---GSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDP 112
Query: 122 ----ASALEALLNAG---VLGLKSFMCPSGINDF---PMTNASHIKEGLSVLARYKRPLL 171
A+ A ++GLK+ S + ++ P+ A I + + PL+
Sbjct: 113 DNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADL------PLM 166
Query: 172 VH 173
VH
Sbjct: 167 VH 168
Score = 28.4 bits (64), Expect = 7.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 339 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE-PEAEFEL 397
+ L T S G+ LE++ + PA++ G G +A+G ADL V++ + EL
Sbjct: 263 YALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKDGRVEL 322
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 341 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELDN 399
L + + KYG++ E+ + PAK+ G + G++ G ADLVVW N
Sbjct: 288 LNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVW---------N 338
Query: 400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433
P+ K G LVY
Sbjct: 339 GDPLEPT-------------SKPEQVYIDGRLVY 359
Score = 38.1 bits (89), Expect = 0.008
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 26/94 (27%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-DPGRTEWEG-------- 60
+G I+++ +E P +V+D + PGLID H+HL D E
Sbjct: 1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETD 57
Query: 61 --------------FPSGTKAAAAGGITTLIDMP 80
K A AGG+TT+ +P
Sbjct: 58 PVTPHVRAIDGINPDDEAFKRARAGGVTTVQVLP 91
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases.
YtcJ is a Bacillus subtilis ORF of unknown function.
The Arabidopsis homolog LAF3 has been identified as a
factor required for photochrome A signalling.
Length = 479
Score = 39.6 bits (93), Expect = 0.003
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 5 AVEIKEGNIISIVSEED-WPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----WE 59
AV +++G I+++ S+ + +V+D ++PG ID H+HL G +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLS 60
Query: 60 GFPSGTKAAAA 70
G S +A A
Sbjct: 61 GVTSKEEALAR 71
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction
also removes the guanine base from the pool and
therefore can play a role in the regulation of cellular
GTP and the guanylate nucleotide pool.
Length = 429
Score = 39.2 bits (92), Expect = 0.003
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 8 IKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAH 49
+ +GNII+ + E R +K G +V+D I+PG ID H H
Sbjct: 31 VVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIH 73
>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized by
a variety of different bacteria. The first three steps
of the atrazine dehalogenation pathway are catalyzed by
atrazine chlorohydrolase (AtzA), hydroxyatrazine
ethylaminohydrolase (AtzB), and N-isopropylammelide
N-isopropylaminohydrolase (AtzC). All three enzymes
belong to the superfamily of metal dependent hydrolases.
AtzA and AtzB, beside other related enzymes are
represented in this CD.
Length = 411
Score = 38.7 bits (91), Expect = 0.005
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 28/102 (27%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DD--- 52
V +++G I+++ +V+D V+MPGL++ H HL DD
Sbjct: 21 DVLVEDGRIVAVGPALP-LPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPL 79
Query: 53 -----------PGRTEWEGFPSGTKAAAA----GGITTLIDM 79
E G A A G TT DM
Sbjct: 80 MEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADM 121
Score = 29.1 bits (66), Expect = 5.9
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 426
AK G G++ +G ADL++ +LD H + + P IS + G V I
Sbjct: 346 AKALGLDEIGSLEVGKKADLILI------DLDGPHLLPVHDP-ISHLVYSANGGDVDTVI 398
Query: 427 SRGNLVYKEG 436
G +V ++G
Sbjct: 399 VNGRVVMEDG 408
>gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 38.4 bits (90), Expect = 0.006
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
AV I++G I V + P + +++D A+++PG ID+H H
Sbjct: 20 AVVIEDG-KIEAVVPAELPAD---AEIIDLKGALLVPGFIDLHIH 60
>gnl|CDD|225985 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 377
Score = 38.5 bits (90), Expect = 0.006
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
E G +D+LSSD+ P + L A ++ L ++L Q
Sbjct: 288 ELAQHGLLDILSSDYVP----------ASLLHAAFRLADLGS------------NISLPQ 325
Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLV 387
+ ++ PA+ G +G IA G ADLV
Sbjct: 326 AVALVTKNPARALGLTDRGRIAPGLRADLV 355
>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 38.1 bits (89), Expect = 0.007
Identities = 60/270 (22%), Positives = 86/270 (31%), Gaps = 78/270 (28%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM---------- 79
+ +D V+ PG ID+HAH + A G+TT +++
Sbjct: 60 RTIDATGLVVAPGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAGVLPVARW 110
Query: 80 ---------PLNSDPST------ISTET-LKLKVDAAEKRIYVDVGFWGGLVP---ENAY 120
PLN S I+ T + + A+ + W E A
Sbjct: 111 YAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAE 170
Query: 121 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 180
LE L+ G LG+ G P T E + AR P H
Sbjct: 171 ILELLEQGLDEGALGIGI-----GAGYAPGTGHKEYLELARLAARAGVPTYTHVR----- 220
Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH--- 237
YL P A +EL+ A +T GAH+HI H
Sbjct: 221 ------------------YLSNVDPRSSVDAYQELIAAAAET-------GAHMHICHVNS 255
Query: 238 --LSDASSSLDLLMEAKTNGDSITVETCPH 265
L D L L+ +A+ G +T E P+
Sbjct: 256 TSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 37.9 bits (89), Expect = 0.009
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ I++G I ++ + S+ +V+D + PG ID+H H+ PG T + P
Sbjct: 21 IAIEDGKIAAVAGD---IDGSQAKKVIDLSGLYVSPGWIDLHVHV-YPGSTPYGDEPDE- 75
Query: 66 KAAAAGGITTLID 78
G+TT++D
Sbjct: 76 -VGVRSGVTTVVD 87
>gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional.
Length = 488
Score = 37.7 bits (88), Expect = 0.011
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLD 51
+V+D G A++ PG ID+ A D
Sbjct: 46 RVIDAGNALVGPGFIDLDALSD 67
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 37.3 bits (87), Expect = 0.014
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
E +G +D+L+SD+ P + L A F L G+ L Q
Sbjct: 287 ELAHEGLLDVLASDYVP----------ASLLLA-------AFQLA-----DDVEGIPLPQ 324
Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 393
++ PA+ G +G+IA G ADLV
Sbjct: 325 AVKMVTKNPARAVGLSDRGSIAPGKRADLVRVHRVD 360
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 37.1 bits (87), Expect = 0.015
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-------R 55
K+ + I G II+I + P +V+D +++PG ID H H+ G R
Sbjct: 18 KKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTR 77
Query: 56 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
T T+A GITT++ + L +D T S E+L K A E
Sbjct: 78 TPEVQLSDLTEA----GITTVVGL-LGTDGITRSMESLLAKARALE 118
Score = 32.9 bits (76), Expect = 0.32
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 388
G+ LE + A+ KG I G ADL+V
Sbjct: 320 DEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLV 358
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 37.3 bits (87), Expect = 0.018
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG- 64
+ I G I+ ++ E +V+D I+PG ID H H++ T PS
Sbjct: 46 IAIAGGRIVGVIGEYRAEAT----EVIDAAGRYIVPGFIDAHLHIESSMLT-----PSEF 96
Query: 65 TKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEK---RIYV 106
+A G TT++ SDP I+ + ++ +D A++ ++YV
Sbjct: 97 ARAVLPHGTTTVV-----SDPHEIANVLGEDGIRFMLDEAKETPLKVYV 140
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 36.7 bits (85), Expect = 0.019
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 16 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITT 75
I + +D+P ++T Q++D ++ PGLID+H H+ G TE P A G+TT
Sbjct: 33 IAAADDYPAPAET-QIIDADGCIVSPGLIDLHVHV-YYGGTEGGVRPD--MYGAPNGVTT 88
Query: 76 LID 78
++D
Sbjct: 89 VVD 91
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently
degraded. In some bacteria, the guanine deaminase gene
is found near the xdhABC genes for xanthine
dehydrogenase. Non-homologous forms of guanine
deaminase also exist, as well as distantly related
forms outside the scope of this model [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 401
Score = 36.5 bits (85), Expect = 0.023
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 8 IKEGNIISIVSEEDW-PRNSKTGQVVDYGEAVIMPGLIDVHAH 49
++ G I+++ + ++ DY +IMPG ID H H
Sbjct: 11 VENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIH 53
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 36.5 bits (85), Expect = 0.027
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLD 51
+ I++G I +I P + + VD +++P +D H HLD
Sbjct: 17 IAIEDGRIAAIG-----PALAVPPDAEEVDAKGRLVLPAFVDPHIHLD 59
>gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional.
Length = 433
Score = 36.3 bits (85), Expect = 0.031
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 30 QVVDYGEAVIMPGLIDVHAH 49
+V DY +I+PG ID H H
Sbjct: 59 EVTDYRGKLILPGFIDTHIH 78
>gnl|CDD|184438 PRK13985, ureB, urease subunit beta; Provisional.
Length = 568
Score = 35.6 bits (82), Expect = 0.054
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI---DMPLNSDPSTIST 90
GE +I+ G ID H H P + P+ A A G+TT+I P + +T T
Sbjct: 122 GEGLIVTAGGIDTHIHFISPQQ-----IPT----AFASGVTTMIGGGTGPADGTNATTIT 172
Query: 91 E---TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 147
LK + AAE+ +++GF G N+ N ++L + AG +G K I++
Sbjct: 173 PGRRNLKWMLRAAEE-YSMNLGFLG---KGNSSNDASLADQIEAGAIGFK-------IHE 221
Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAE 175
T S I L V +Y + +H +
Sbjct: 222 DWGTTPSAINHALDVADKYDVQVAIHTD 249
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 35.1 bits (81), Expect = 0.060
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 13/108 (12%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM-PGLIDVHAHLDDPG------- 54
K+ + I II+I E ++ VV E +I PG ID H H+ G
Sbjct: 17 KKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTT 76
Query: 55 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 102
RT TK GG+TT++ + L +D T E+L K A E+
Sbjct: 77 RTPELTLSDITK----GGVTTVVGL-LGTDGITRHMESLLAKARALEE 119
>gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase
subunit A. Members of this largely archaeal protein
family are subunit A of the formylmethanofuran
dehydrogenase. Nomenclature in some bacteria may
reflect inclusion of the formyltransferase described by
TIGR03119 as part of the complex, and therefore call
this protein formyltransferase/hydrolase complex Fhc
subunit A. Note that this model does not distinguish
tungsten (FwdA) from molybdenum-containing (FmdA) forms
of this enzyme; a single gene from this family is
expressed constitutively in Methanobacterium
thermoautotrophicum, which has both tungsten and
molybdenum forms and may work interchangeably.
Length = 556
Score = 35.4 bits (82), Expect = 0.060
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
+ I++G I+ VS +K +V+D ++M G +D H H
Sbjct: 20 VMDIFIRDGKIVEPVS-----GGTKPAKVIDASGKLVMAGGVDSHTH 61
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 35.1 bits (81), Expect = 0.069
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
+ I I+ + +++ ++ PGLID HAH+ G EG
Sbjct: 22 INNLRIINDIIVDADKYPV----ASETRIIHADGCIVTPGLIDYHAHVFYDGT---EGGV 74
Query: 63 SGTKAAAAGGITTLID 78
G+TT++D
Sbjct: 75 RPDMYMPPNGVTTVVD 90
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 35.0 bits (81), Expect = 0.091
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI------DMPLNSDPST 87
GE I+ G ID H H P + E A A GITT+I + T
Sbjct: 122 GEGKIVTAGGIDTHVHFICPQQIE---------EALASGITTMIGGGTGPAAGTKATTCT 172
Query: 88 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 137
+K + AA+ + V++GF G N + AL + AG GLK
Sbjct: 173 PGPWNIKRMLQAADG-LPVNIGFLG---KGNGSSPDALAEQIEAGACGLK 218
Score = 28.4 bits (64), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 376 GAIAIGNHADLVVWEPE 392
G++ +G ADLV+WEP
Sbjct: 423 GSVEVGKLADLVLWEPA 439
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 34.4 bits (80), Expect = 0.11
Identities = 32/139 (23%), Positives = 44/139 (31%), Gaps = 47/139 (33%)
Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
+ G +D+LSSD+ P +SL L + G+ L Q
Sbjct: 292 DLAAAGLLDILSSDYYP--------------------ASL---LDAAFRLADDGGLDLPQ 328
Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 417
+ + PA+ AG +G IA G ADLV PV
Sbjct: 329 AVALVTANPARAAGLDDRGEIAPGKRADLVR------VRRAGGLPV-------------- 368
Query: 418 LSGKVLATISRGNLVYKEG 436
V A G V+ G
Sbjct: 369 ----VRAVWRGGRRVFLAG 383
Score = 32.1 bits (74), Expect = 0.60
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA-HLDD-----PGRTEW 58
++ I++G I +I P S +D ++PGL+D+H +L+ PG +W
Sbjct: 21 SLLIEDGRIAAID-----PGASALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPG-VDW 74
Query: 59 EGFPSGT------KAAAAGGITT 75
P+ AA GITT
Sbjct: 75 ---PADAALAAHDAQLAAAGITT 94
>gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed.
Length = 568
Score = 34.0 bits (79), Expect = 0.18
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 26/113 (23%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET- 92
GE +I+ G ID H H P + E A A G+TT+I + P+T + T
Sbjct: 122 GEGLIVTAGGIDTHIHFICPQQIE---------EALASGVTTMIGG--GTGPATGTNATT 170
Query: 93 -------LKLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 137
+ + AA+ +++GF G G NA ALE + AG +GLK
Sbjct: 171 CTPGPWHIHRMLQAADA-FPMNIGFLGKG----NASLPEALEEQIEAGAIGLK 218
>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 33.4 bits (77), Expect = 0.22
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
A+ I+ I+ I + ++ + +D +IMPGLI+ H H+
Sbjct: 23 AIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHI 68
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates
adenine to form hypoxanthine. This reaction is part of
one of the adenine salvage pathways, as well as the
degradation pathway. It is important for adenine
utilization as a purine, as well as a nitrogen source
in bacteria and archea.
Length = 422
Score = 33.4 bits (77), Expect = 0.24
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 33 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI 88
D I+PG ID H H++ T E F KA G TT+I +DP I
Sbjct: 1 DAEGKYIVPGFIDAHLHIESSMLTPSE-F---AKAVLPHGTTTVI-----ADPHEI 47
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 33.0 bits (76), Expect = 0.25
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK- 102
ID H HLD E + A G+T ++ + E ++ A K
Sbjct: 1 IDAHCHLDFKDFD--EDRDEVIERAREAGVTAVVVV-------GTDLEDFLRALELARKY 51
Query: 103 --RIYVDVGF 110
++Y VG
Sbjct: 52 PGKVYAAVGV 61
>gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase.
[Central intermediary metabolism, Amino sugars].
Length = 380
Score = 33.3 bits (76), Expect = 0.28
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
AV I +G I ++ +E + K +D V+ PG ID+H H
Sbjct: 23 AVGINDGKISTVSTEAELEPEIKE---IDLPGNVLTPGFIDIHIH 64
>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated.
Length = 438
Score = 32.6 bits (75), Expect = 0.36
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 2 CKRAVEIKEGNIISIV----SEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
+EI +G I +I+ + ++ P VD ++ P +D+H HLD
Sbjct: 39 VLVDIEIADGKIAAILPAGGAPDELPA-------VDLKGRMVWPCFVDMHTHLD 85
>gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family.
Length = 392
Score = 32.8 bits (75), Expect = 0.39
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 302 DGHIDMLSSDHSPTVPE-LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 360
G L SD + + + + ++LE+ +
Sbjct: 312 AGVKVALGSDAPVATYDPWSGIGAAVMRRTAEMLE--------GRVLKPDERLSLEEALA 363
Query: 361 WWSERPAKLAGQ-VSKGAIAIGNHADLVV 388
++ PA G KG +A+G ADLV+
Sbjct: 364 LYTRGPAYALGLEDRKGTLAVGKDADLVI 392
Score = 30.5 bits (69), Expect = 1.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 38 VIMPGLIDVHAHLDDPG---RTEWEGFPSGTKAAAAGGI 73
+++PG +D H HLD G E + +G+ A +
Sbjct: 1 LVLPGFVDPHTHLDGTGLNLGRELDLSGTGSVAGGLALL 39
>gnl|CDD|235873 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 32.7 bits (75), Expect = 0.44
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
+EI++G I++I + T D +++P ++H HLD
Sbjct: 34 LEIQDGKIVAIRPNK--QVPDATLPTYDANGLLMLPAFREMHIHLD 77
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 32.4 bits (74), Expect = 0.44
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
K+ + E I+ VSE V+D +V+MPGL++ H H
Sbjct: 20 KKGSVVIEDGTITEVSEST---PGDADTVIDAKGSVVMPGLVNTHTHA 64
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 32.4 bits (74), Expect = 0.54
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 276 DGDTRFKCAPPIRDAANKEKLWEA-LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 334
D +F+ +R + ++L E + I SSD + ++P K + GN + G+
Sbjct: 249 SIDPQFRKEGEVRPSEALKRLLEQGVPLERITF-SSDGNGSLP--KFDENGNLVGL--GV 303
Query: 335 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 392
S+ +L + + LE + A++ KG I G ADLV+ + +
Sbjct: 304 GSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKGEIQPGFDADLVILDKD 361
Score = 31.2 bits (71), Expect = 1.2
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-------R 55
K+ + I G I++I + + P VVD +++PG ID H H+ G R
Sbjct: 17 KKDILIAGGKILAIEDQLNLPGYEN-VTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTR 75
Query: 56 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
T T A G+TT++ L +D + S E L K A E
Sbjct: 76 TPEVTLSDLTTA----GVTTVVGC-LGTDGISRSMEDLLAKARALE 116
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes
the third step in histidine degradation [Energy
metabolism, Amino acids and amines].
Length = 377
Score = 32.0 bits (73), Expect = 0.60
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWE--- 59
+ I G I+ I P T +++D G ++ PGL+D H HL G E+E
Sbjct: 5 VILIHGGKIVWIGQLAALPGEEAT-EIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKL 63
Query: 60 -GFPSGTKAAAAGGI 73
G A GGI
Sbjct: 64 QGASYLEILAQGGGI 78
>gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated.
Length = 419
Score = 31.9 bits (72), Expect = 0.63
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 27 KTGQVVDYGEAVIMPGLIDVHAH---------LDDPGRTEW 58
+ Q++DY A IMPGL++ H H DD EW
Sbjct: 44 QAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNLHEW 84
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 31.4 bits (72), Expect = 0.82
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
+ I++G I +I P + +V D G A+ +PGL+D H HLD
Sbjct: 19 ILIRDGRIAAIGPALAAPPGA---EVEDGGGALALPGLVDGHIHLD 61
>gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional.
Length = 418
Score = 31.4 bits (71), Expect = 0.92
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 30/101 (29%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL------------------- 50
EGN I V + N + ++D V+MPGLI+ HAH+
Sbjct: 27 EGNKIVYVGDV----NEEADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEEFLM 82
Query: 51 ----DDPGRTEWEGFPS---GTKAAAAGGITTLIDMPLNSD 84
D RT + S G GIT +D+ + D
Sbjct: 83 KTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYSED 123
>gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional.
Length = 408
Score = 31.5 bits (72), Expect = 1.0
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
+ I+ I E+ + ++ + +V++P I+ H HL
Sbjct: 27 DDKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHL 67
>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 31.5 bits (71), Expect = 1.2
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 3 KRAVEIKEGNIISI-VSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF 61
V I++G I ++ D + + VD ++ PG IDVH H D +
Sbjct: 25 TTDVGIRDGVIAAVAKGALD---GTGCPEEVDAAGRIVAPGFIDVHTHYD--AEVLLDPG 79
Query: 62 PSGTKAAAAGGITTLI 77
+ + G+TT++
Sbjct: 80 ---LRPSVRHGVTTVV 92
>gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this
model includes an experimentally characterized adenine
deaminase of Bacillus subtilis. It also include a
member from Methanobacterium thermoautotrophicum, in
which adenine deaminase activity has been detected
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 552
Score = 31.3 bits (71), Expect = 1.2
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG- 64
+ I G+I + +V+D +PG ID H H++ T PS
Sbjct: 22 IAIANGHIAGVGKYNGV-------KVIDALGEYAVPGFIDAHIHIESSMLT-----PSEF 69
Query: 65 TKAAAAGGITTLIDMPLNSDPSTI 88
K G+TT++ SDP I
Sbjct: 70 AKLVLPHGVTTVV-----SDPHEI 88
>gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
acid transport and metabolism].
Length = 568
Score = 30.8 bits (70), Expect = 1.8
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET- 92
GE I+ G ID H H P + E A A GITT+I + P+ + T
Sbjct: 122 GEGKIVTAGGIDTHIHFICPQQIE---------EALASGITTMIGG--GTGPADGTNATT 170
Query: 93 -------LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 137
+ + AA+ + +++GF G NA N + L + AG +GLK
Sbjct: 171 CTPGPWHIARMLQAADG-LPMNIGFLG---KGNASNPAPLAEQIEAGAIGLK 218
>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit
A; Methanogenic bacteria and archea derive the energy
for autotrophic growth from methanogenesis, the
reduction of CO2 with molecular hydrogen as the
electron donor. FMDH catalyzes the first step in
methanogenesis, the formyl-methanofuran synthesis. In
this step, CO2 is bound to methanofuran and
subsequently reduced to the formyl state with electrons
derived from hydrogen.
Length = 541
Score = 30.5 bits (69), Expect = 2.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
K + I++G I+ S +K +V+D V+M G +D+H+H
Sbjct: 17 KMDIFIRDGKIVESSS------GAKPAKVIDASGKVVMAGGVDMHSH 57
>gnl|CDD|183966 PRK13309, ureC, urease subunit alpha; Reviewed.
Length = 572
Score = 30.2 bits (68), Expect = 2.6
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 32/174 (18%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET- 92
GE +I+ ID H HL P + A + G+TT + T T
Sbjct: 126 GEHLILTAAGIDTHIHLISPQQAY---------HALSNGVTTFFGGGIGPTDGTNGTTVT 176
Query: 93 -----LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 147
++ + + E + V+VG G N+Y L AGV G K D
Sbjct: 177 PGPWNIRQMLRSIEG-LPVNVGILG---KGNSYGRGPLLEQAIAGVAGYKVH------ED 226
Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAEM--EKGSERHVKLEDDTLDTRSYSTY 199
+ T A+ ++ L V + VH + E G +V+ D + R+ T+
Sbjct: 227 WGATAAA-LRHALRVADEVDIQVAVHTDSLNECG---YVEDTIDAFEGRTIHTF 276
>gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase;
Reviewed.
Length = 451
Score = 30.2 bits (69), Expect = 2.6
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
+ ++ G I+ + P +V D V+ PGL++ H H
Sbjct: 25 GLVVEGGRIVEVGPGGALP--QPADEVFDARGHVVTPGLVNTHHHF 68
>gnl|CDD|216907 pfam02156, Glyco_hydro_26, Glycosyl hydrolase family 26.
Length = 309
Score = 29.7 bits (67), Expect = 3.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 42 GLIDVHAHLDDPGRTEWEGFPSGT 65
G++ V H ++PG+ GF +G
Sbjct: 88 GIVQVSWHWNNPGKQWGRGFYTGA 111
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 29.6 bits (67), Expect = 3.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 13/42 (30%)
Query: 334 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK-LAGQVS 374
+++L V+P+ W LA+WWS RP + LA QV
Sbjct: 198 LANLLLVIPLLW------------LAAWWSLRPIEALAKQVR 227
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 29.5 bits (66), Expect = 3.6
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 426
+ + + A A LV++ P EL + + HP I + V A
Sbjct: 142 NRALALLFQAADAAHGPKILVLYVPHPSDELAEE---LLSHPKIDLIVATGGRDAVDA-- 196
Query: 427 SRGNLVYKEGNHAPA 441
K H P
Sbjct: 197 -----AVKHSPHIPV 206
>gnl|CDD|187686 cd09628, DOMON_SDR_2_like, DOMON domain of stromal cell-derived
receptor 2 (ferric chelate reductase 1) and related
proteins. Stromal cell-derived receptor 2 (or ferric
chelate reductase 1) reduces Fe(3+) to Fe(2+) ahead of
iron transport from the endosome to the cytoplasm. This
transmembrane protein is a member of the cytochrome b561
family and contains a DOMON domain which may bind to
heme or another ligand. DOMON-like domains can be found
in all three kindgoms of life and are a diverse group of
ligand binding domains that have been shown to interact
with sugars and hemes. DOMON domains were initially
thought to confer protein-protein interactions. They
were subsequently found as a heme-binding motif in
cellobiose dehydrogenase, an extracellular fungal
oxidoreductase that degrades both lignin and cellulose,
and in ethylbenzene dehydrogenase, an enzyme that aids
in the anaerobic degradation of hydrocarbons. The domain
interacts with sugars in the type 9 carbohydrate binding
modules (CBM9), which are present in a variety of
glycosyl hydrolases, and it can also be found at the
N-terminus of sensor histidine kinases.
Length = 169
Score = 28.5 bits (64), Expect = 4.2
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 240 DASSSLDLLMEAKTNGDSITVE-----TCPHYLA--FSAEEIPDGDTRFKCAPPIRDAAN 292
D S + L+ + +GDS+ E Y+A FS ++ D +C
Sbjct: 21 DPSKDCNFLVTYRVDGDSVEFELSGKTVDDGYVAVGFSDDKKMGDDDVVECVRDAGGRVE 80
>gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA.
Members of this protein family are found exclusively in
genomes that contain putative set of labile
selenium-dependent enzyme accessory proteins as well as
homologs of a labile selenium-dependent purine
hydroxylase. A mutant in this gene in Escherichia coli
had improved stationary phase viability. The function
is unknown.
Length = 441
Score = 29.4 bits (66), Expect = 4.4
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
+ I I ++ E+ + +D +IMPG I+ H H
Sbjct: 22 DIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHF 67
>gnl|CDD|183010 PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase;
Provisional.
Length = 382
Score = 29.2 bits (66), Expect = 4.6
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 46
AV I +G I ++ + P + D A++ PG ID+
Sbjct: 20 AVVIADGLIEAVCPVAELPPGIEQ---RDLNGAILSPGFIDL 58
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a
cytoplasmic protein, shown to have magnesium dependent
DNase activity.
Length = 251
Score = 29.1 bits (66), Expect = 4.6
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 102
LID H HLD P A G+ +I + + S + E K
Sbjct: 1 LIDTHCHLDFP--QFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAK-----KYD 53
Query: 103 RIYVDVGF 110
+Y VG
Sbjct: 54 NVYAAVGL 61
>gnl|CDD|239318 cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily;
V-shaped homodimeric proteins containing a redox active
CXXC motif imbedded in a TRX fold. They function as
protein disulfide isomerases and chaperones in the
bacterial periplasm to correct non-native disulfide
bonds formed by DsbA and prevent aggregation of
incorrectly folded proteins. DsbC and DsbG are kept in
their reduced state by the cytoplasmic membrane protein
DsbD, which utilizes the TRX/TRX reductase system in the
cytosol as a source of reducing equivalents. DsbG differ
from DsbC in that it has a more limited substrate
specificity, and it may preferentially act later in the
folding process to catalyze disulfide rearrangements in
folded or partially folded proteins. Also included in
the alignment is the predicted protein TrbB, whose gene
was sequenced from the enterohemorrhagic E. coli type IV
pilus gene cluster, which is required for efficient
plasmid transfer.
Length = 197
Score = 28.8 bits (65), Expect = 4.9
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 250 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 307
E K N D +TV +PD + A I A ++ K W M G
Sbjct: 98 ELKPNADGVTVR----IFPVPILGLPDSTAK---AAAIWCAKDRAKAWTDAMSGGKVP 148
>gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional.
Length = 382
Score = 28.8 bits (65), Expect = 6.5
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 32 VDYGEAVIMPGLIDVHAHLDDPG-RT-EWEGFPSGTKAAAAGGITTLID 78
VD G ++PG +D H+HL G R+ E+ +G + +AGGI T +
Sbjct: 54 VDAGGRAVLPGFVDSHSHLVFAGDRSAEFAARMAG-EPYSAGGIRTTVA 101
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor
[Central intermediary metabolism, Nitrogen metabolism].
Length = 567
Score = 28.6 bits (64), Expect = 7.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 376 GAIAIGNHADLVVWEPE 392
G+I +G ADLV+WEP
Sbjct: 422 GSIEVGKLADLVLWEPA 438
Score = 28.6 bits (64), Expect = 8.2
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 27/148 (18%)
Query: 35 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET- 92
GE I+ G ID H H P + + AA GITTLI T +T
Sbjct: 121 GEGKIVTAGGIDTHVHYISPQQVQ---------AALDNGITTLIGGGTGPADGTNATTCT 171
Query: 93 -----LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 147
L + AA+ + ++ GF G + +AL + AG GLK D
Sbjct: 172 PGPWYLHRMLQAADG-LPINFGFTG---KGSGSGPAALIEQIEAGACGLKVH------ED 221
Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAE 175
+ T + I LSV Y + VH +
Sbjct: 222 WGAT-PAAIDNALSVADEYDVQVAVHTD 248
>gnl|CDD|223006 PHA03179, PHA03179, UL43 envelope protein; Provisional.
Length = 387
Score = 28.3 bits (63), Expect = 7.8
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 108 VGFWGGLV-PENAYNASALEALLNAGVLGL 136
+GF G +V P +AY AS L LL AGV GL
Sbjct: 43 LGFVGSVVLPRDAYAASPLPGLLLAGVAGL 72
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 28.4 bits (64), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 30 QVVDYGEAVIMPGLIDVHAHL 50
+VVD ++MPGL+D H H
Sbjct: 46 EVVDARGMIVMPGLVDTHRHT 66
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 28.3 bits (63), Expect = 8.5
Identities = 22/138 (15%), Positives = 35/138 (25%), Gaps = 10/138 (7%)
Query: 44 IDVHAHLDDPGRTEWEGFPSGTKA--------AAAGGITTLIDMPLNSDPSTISTETLKL 95
ID HAHL P + + + S
Sbjct: 1 IDAHAHLPGGSI-PDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANN 59
Query: 96 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 155
+V A + L P + +A+A E LG + P+ +
Sbjct: 60 RVLAEALKRPGRFVGGAALPPPDPEDAAA-ELERRLAELGFRGVRLNPHPGGGPLLDPRL 118
Query: 156 IKEGLSVLARYKRPLLVH 173
LA P+ +H
Sbjct: 119 DDPIFEALAELGLPVDLH 136
>gnl|CDD|219670 pfam07967, zf-C3HC, C3HC zinc finger-like. This zinc-finger like
domain is distributed throughout the eukaryotic kingdom
in NIPA (Nuclear interacting partner of ALK) proteins.
NIPA is implicate to perform some sort of antiapoptotic
role in nucleophosmin-anaplastic lymphoma kinase (ALK)
mediated signaling events. The domain is often repeated,
with the second domain usually containing a large insert
(approximately 90 residues) after the first three
cysteine residues. The Schizosaccharomyces pombe the
protein containing this domain is involved in mRNA
export from the nucleus.
Length = 132
Score = 27.4 bits (61), Expect = 9.6
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
D + E+C L + I D + E+ + L+ GH
Sbjct: 42 DMLKCESCGARLCYKLPNIVKLD------ESVYKKLV-EEYSKLLVTGH 83
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 28.2 bits (63), Expect = 9.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 8 IKEGNII--SIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
+K+G I+ S VSE +V+D ++MPG +D H+H
Sbjct: 28 VKDGKIVEESEVSESK-------AKVIDASGKLVMPGGVDSHSH 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,221,819
Number of extensions: 2276739
Number of successful extensions: 1752
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1608
Number of HSP's successfully gapped: 146
Length of query: 450
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 350
Effective length of database: 6,502,202
Effective search space: 2275770700
Effective search space used: 2275770700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.3 bits)