RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013050
(450 letters)
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 492 bits (1270), Expect = e-173
Identities = 157/439 (35%), Positives = 227/439 (51%), Gaps = 26/439 (5%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
+ V I+ G + +I + +D + PG++DVH H ++PGRTEWEGF
Sbjct: 23 RADVAIRNGIVSAITEPGSISSDDG--PAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFA 80
Query: 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
SG+K+ AAGG+TT DMPLNS+P TI+ E L K A ++ VD FWGGLVP N
Sbjct: 81 SGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NI 137
Query: 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KG 179
L+ L + GV+G K+FM G +DF ++ + +G+ +A L VHAE
Sbjct: 138 DHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNA 197
Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
E + Y + RP E A+ +L A+ T +HI H+S
Sbjct: 198 LTTIAIEEQRL----TVKDYSEARPIVSELEAVERILRFAQLT-------CCPIHICHVS 246
Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 299
L + +AK G +++VETCPHYL FS +E + KCAPP+R+ E LW+
Sbjct: 247 SR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDG 305
Query: 300 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQL 358
LM G ID++SSDHSP++P++K + WGGI+ Q L V + G K + L Q+
Sbjct: 306 LMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQI 363
Query: 359 ASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 417
S PAK G KG I +G A + + + L+ ++ +HP IS Y+G+R
Sbjct: 364 VQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASD-LYYRHP-ISPYVGQR 421
Query: 418 LSGKVLATISRGNLVYKEG 436
GKV TI +G VY++
Sbjct: 422 FRGKVKHTICQGKHVYQDH 440
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 484 bits (1249), Expect = e-170
Identities = 155/448 (34%), Positives = 229/448 (51%), Gaps = 33/448 (7%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
+ +K G I +I + +V+D V+ PG++D H H+ +PGR+ WEG+
Sbjct: 40 VVDIAVKGGKIAAIGQDL-----GDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYE 94
Query: 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
+GT+AAA GGITT+I+MPLN P+T+ +++LK DAA+ ++ +D GGLV N
Sbjct: 95 TGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NI 151
Query: 123 SALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEME- 177
L L GV+G K F+ G NDF N +G L +P+LVH E
Sbjct: 152 DRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENAL 211
Query: 178 --KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 235
K E + Y+ +RP E AIR +L +AK G LH+
Sbjct: 212 ICDELGEEAKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHV 260
Query: 236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 295
H+S ++ + A+ G IT E+CPHY ++ + T KC+PPIRD N++
Sbjct: 261 CHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKG 319
Query: 296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVT 354
+WE L +G ID L SDHSP PE+K GN +KAWGGI+ LQ + V + +K G++
Sbjct: 320 MWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMS 376
Query: 355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
L + A + G KG IA G AD V +P + + L ND + +H +S Y+
Sbjct: 377 LPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDD-LEYRHK-VSPYV 434
Query: 415 GRRLSGKVLATISRGNLVYKEGNHAPAA 442
GR + ++ TI RG+++Y P A
Sbjct: 435 GRTIGARITKTILRGDVIYDIEQGFPVA 462
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 426 bits (1098), Expect = e-147
Identities = 123/449 (27%), Positives = 212/449 (47%), Gaps = 28/449 (6%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-EWEGFPSG 64
+ +K+G + +I ++ S+ +D G +MPG++D H H+ D + F
Sbjct: 22 ILVKDGKVAAISADTSDVEASR---TIDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELD 78
Query: 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
+++AA GGITT+I+MP + P T + + K A +R+ VD +GG VP N
Sbjct: 79 SESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNL---PE 134
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KGSE 181
+ + +AG +G KS M S F + + E +A ++VHAE E + +
Sbjct: 135 IRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQ 194
Query: 182 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241
+ +K + Y ++P E AI+ L + K+ G L ++H+S+
Sbjct: 195 KQIKAAGGK----DMAAYEASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNP 243
Query: 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 301
++L+ +A++ G + E+ P YL + ++ K APP+R A +LWE L
Sbjct: 244 DG-VELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLE 302
Query: 302 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 360
+G ID L SDH E K + KA G L+ LP+ + G G ++LE+L
Sbjct: 303 NGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVE 362
Query: 361 WWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 419
E+PAKL G KG + +G+ ADL++ + + + ++D H S + G ++
Sbjct: 363 VMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQ-FRSLHK-YSPFDGMPVT 420
Query: 420 GKVLATISRGNLVYKEGN-HAPAACGSPI 447
G + T+ RG +V ++G G +
Sbjct: 421 GAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 393 bits (1013), Expect = e-134
Identities = 114/443 (25%), Positives = 189/443 (42%), Gaps = 35/443 (7%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPS 63
+ IK+G I I + +D + PG IDVH H++ + F +
Sbjct: 21 LGIKDGKITQIGGAL-----GPAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFAT 75
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
T AAA GG TT++D E + A + +D G+ ++
Sbjct: 76 ATVAAACGGTTTIVDFCQQD-RGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIE 134
Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKG 179
LE L + G+ K FM G M + + + L + ++VHAE +
Sbjct: 135 ELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYL 191
Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
++ V E T + + +RPP E A L +A+ A ++IVH++
Sbjct: 192 RDKFVA-EGKT----APIYHALSRPPRVEAEATARALALAEIV-------NAPIYIVHVT 239
Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKCAPPIRDAANKEKL 296
SL+ +M AK+ G ETC HYL + E++ D ++ PP R + + L
Sbjct: 240 -CEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVL 298
Query: 297 WEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355
W AL +G + +SSDH K +F G ++ L + + + ++L
Sbjct: 299 WNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISL 358
Query: 356 EQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
Q + RPAK+ G KG IA+G+ AD+V+W+PEAE ++ +H S+Y
Sbjct: 359 TQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTA-MHNAMD-YSSYE 416
Query: 415 GRRLSGKVLATISRGNLVYKEGN 437
G ++ G + RG ++ EG+
Sbjct: 417 GHKVKGVPKTVLLRGKVIVDEGS 439
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 380 bits (978), Expect = e-129
Identities = 118/445 (26%), Positives = 202/445 (45%), Gaps = 36/445 (8%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
V I +++I S+ +V+D ++PG ID H HLD P G + F +
Sbjct: 21 VLIDGEKVVAIGSDLQAT----DAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFT 76
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
GTKAAA GG T+++D L S + + A + +D GF + N +
Sbjct: 77 GTKAAAFGGTTSIVDFCLTS-KGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLE 135
Query: 124 ALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEK 178
LE+++N G+ LK FM M + + + L + VHAE ++
Sbjct: 136 ELESVVNNEGITSLKVFMAYKN---VLMADDETLFKTLIRAKELGALVQVHAENGDVLDY 192
Query: 179 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238
+++ + E +T + TRPP E A + + A L++VH+
Sbjct: 193 LTKQALA-EGNT----DPIYHAYTRPPEAEGEATGRAIALTALA-------DAQLYVVHV 240
Query: 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKCAPPIRDAANKEK 295
S + ++ + EA+ G ++ ETCP YL + D ++ +PP+R+ N++
Sbjct: 241 S-CADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDV 299
Query: 296 LWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 353
LW AL +G + + SDH P K L +F K G ++ + + +S G RK +
Sbjct: 300 LWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKI 359
Query: 354 TLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
+L Q S + AKL G KG IA+G+ AD+V+++P + + + HM +
Sbjct: 360 SLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVET-HHMNVD-YNP 417
Query: 413 YLGRRLSGKVLATISRGNLVYKEGN 437
+ G ++ G V++ +SRG V +
Sbjct: 418 FEGMQVHGDVISVLSRGAFVVRNKQ 442
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 378 bits (973), Expect = e-128
Identities = 111/437 (25%), Positives = 182/437 (41%), Gaps = 30/437 (6%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
V I I I+ E ++ + +V++ + PG ID H +PG T S
Sbjct: 24 VMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASE 83
Query: 65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
++AA AGG+T+ +DMP N++P T E L K + + GF+ G +N
Sbjct: 84 SRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDNI---DE 139
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGS 180
++ + V GLK F+ S N + + + + H E +
Sbjct: 140 IKRVDKHLVPGLKLFLGSSTGN----MLVDNKETLEKIFGECDLLIATHCEKEEIIRANK 195
Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240
E + + LD + R + E + +A+ A LHI+HLS
Sbjct: 196 EHYKAKYGNDLDIHFHPLI---RSEEACYRSSAEAVELAERM-------NARLHILHLST 245
Query: 241 ASSSLDLL-MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 299
L L + T IT E C H+L FS + R K P I+ +++E L A
Sbjct: 246 EKE-LSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAA 304
Query: 300 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 359
+ +G ID++++DH+P + K EG+ L+A G +Q L + ++E++
Sbjct: 305 VRNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIV 361
Query: 360 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 419
S + PA L +G I G +ADLV+ +P + + D+ + S + G S
Sbjct: 362 SKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADN-ILSLC-GWSPFEGFTFS 419
Query: 420 GKVLATISRGNLVYKEG 436
V T G L Y +G
Sbjct: 420 HSVAYTFVNGCLAYAKG 436
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 371 bits (956), Expect = e-126
Identities = 105/443 (23%), Positives = 184/443 (41%), Gaps = 33/443 (7%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW--EGFPS 63
+ + I I + P ++ V+D + PG ID H H+ P + + +
Sbjct: 20 IYAEGETITRIGQNLEAPPGTE---VIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHET 76
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
G+KAA GG TT I+M + + E +L AE Y D F + +
Sbjct: 77 GSKAALMGGTTTYIEMCCP-SRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEG 135
Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKG 179
L ++ G+ K F+ F + + + L + + H E + +
Sbjct: 136 QLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRL 192
Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
++ + E T + +RP + E T + T GA ++VHLS
Sbjct: 193 QQKLLS-EGKT----GPEWHEPSRPEAVEAEGTARFATFLETT-------GATGYVVHLS 240
Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCAPPIRDAANKEKL 296
+LD M AK G I +E+ + G ++ +PP+RD N++ L
Sbjct: 241 -CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVL 299
Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 355
W+AL G ID + +DH P E KLL + F GI +++ + + ++YG + + +
Sbjct: 300 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDI 359
Query: 356 EQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
+ S + AKL G KG IA+G+ ADLVV++P+ + H+ + + +
Sbjct: 360 HRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKT-QHVNND-YNGFE 417
Query: 415 GRRLSGKVLATISRGNLVYKEGN 437
G + G+ RG + ++G
Sbjct: 418 GFEIDGRPSVVTVRGKVAVRDGQ 440
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 374 bits (963), Expect = e-126
Identities = 100/443 (22%), Positives = 176/443 (39%), Gaps = 26/443 (5%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFP 62
V +++G + ++ + P + G +V+D +++PG ID H H+ P G + F
Sbjct: 47 VLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFH 106
Query: 63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
GTKAA +GG T +ID + ++ E + A+ ++ D + +
Sbjct: 107 QGTKAALSGGTTMIIDFAIPQKGGSL-IEAFETWRSWADPKVCCDYSLHVAVTWWSDQVK 165
Query: 123 SALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 181
++ L+ + GV K FM D M + E S VHAE
Sbjct: 166 EEMKILVQDKGVNSFKMFMAYK---DLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIA 222
Query: 182 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241
K T + RP + E A +T+A L+IVH+ +
Sbjct: 223 EGAKKMLALGIT-GPEGHELCRPEAVEAEATLRAITIASAV-------NCPLYIVHVM-S 273
Query: 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKL 296
S+ ++ +A+ +G + E L + + PP+R D + + L
Sbjct: 274 KSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFL 333
Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTL 355
L + + +D+ K L + +F K G++ ++ + V W G G +
Sbjct: 334 MNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDE 393
Query: 356 EQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
+ + S AK+ KG IA+G+ AD+V+W+P+ + H + +
Sbjct: 394 NRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKT-HHQAVN-FNIFE 451
Query: 415 GRRLSGKVLATISRGNLVYKEGN 437
G G L TISRG +VY+ G
Sbjct: 452 GMVCHGVPLVTISRGKVVYEAGV 474
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 369 bits (950), Expect = e-124
Identities = 110/456 (24%), Positives = 188/456 (41%), Gaps = 40/456 (8%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
V+++ G I+ I N + +D +MPG ID H HL+ P G + F S
Sbjct: 21 VKVEGGRIVEIGP------NLSGAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFES 74
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
GT+AA AGG T ++D L S P E L + + + + D F + +
Sbjct: 75 GTRAALAGGTTMVVDFALPS-PGQSLLEALTMWDNKSTRA-NCDYSFHMAITWWGEQVFN 132
Query: 124 ALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEK 178
+E ++ + G+ K FM G M + + A LVHAE + +
Sbjct: 133 EMETIVKDKGINTFKHFMAYKGA---LMVDDDEMFSSFQRCAALGALPLVHAENGDVVAQ 189
Query: 179 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238
+ + E ++ + +RP E A + +A G ++IVH
Sbjct: 190 LQAKLLA-EGNS----GPEAHAYSRPAEVEGEAANRAIMIADMA-------GCPVYIVHT 237
Query: 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIRDAANKE 294
S + + + A+ G + E +L E D D R +PP R+ +++
Sbjct: 238 S-CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQD 296
Query: 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-V 353
LW L G + ++++DH E K G+F + G L+ +P+ W+YG G +
Sbjct: 297 SLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRI 356
Query: 354 TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
T+ + + S AK+ KGAI +G ADLVVW+P+ + +
Sbjct: 357 TMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKT-QQSAID-YNV 414
Query: 413 YLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 447
+ G+ ++G T++RG + +EG G +
Sbjct: 415 FEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 364 bits (936), Expect = e-122
Identities = 102/446 (22%), Positives = 172/446 (38%), Gaps = 36/446 (8%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD--DPGRTEWEGFPS 63
+ +++G I I P K ++ +++PG IDVH D G T + F
Sbjct: 46 IYMEDGLIKQIGENLIVPGGVK---TIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQ 102
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
GTKAA AGG T +ID + +P T + A+ + D + +
Sbjct: 103 GTKAALAGGTTMIIDHVVP-EPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQE 161
Query: 124 ALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEK 178
+EAL+ + GV +M D I E LSV+ VHAE + +
Sbjct: 162 EMEALVKDHGVNSFLVYMAFK---DRFQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAE 218
Query: 179 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238
+R + L ++ +RP E A+ +T+A T L+I +
Sbjct: 219 EQQRILDLGIT-----GPEGHVLSRPEEVEAEAVNRAITIANQT-------NCPLYITKV 266
Query: 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANK 293
+ SS +++ +A+ G + E L + F +PP+ D
Sbjct: 267 M-SKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTP 325
Query: 294 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG- 352
+ L L G + + S H K + + NF G + + + V W G
Sbjct: 326 DFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGK 385
Query: 353 VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 411
+ Q + S AK+ KG IA+G+ ADLV+W+P++ + + +
Sbjct: 386 MDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKT-HNSSLE-YN 443
Query: 412 AYLGRRLSGKVLATISRGNLVYKEGN 437
+ G G L IS+G +V ++G
Sbjct: 444 IFEGMECRGSPLVVISQGKIVLEDGT 469
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 362 bits (930), Expect = e-121
Identities = 95/445 (21%), Positives = 170/445 (38%), Gaps = 34/445 (7%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
V ++ G I I + + +VVD + +++PG ID H H P G + F
Sbjct: 28 VLVENGIIKEISKNIEPK---EGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDI 84
Query: 64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
GT+AA AGG T +ID + E A++++ D + + +
Sbjct: 85 GTQAAVAGGTTFIIDFVIP-TRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSR 143
Query: 124 ALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKG 179
+E L+ GV K FM M + VHAE M
Sbjct: 144 EMEILVKERGVNSFKCFMAYKNSF---MVTDQEMYHIFKRCKELGAIAQVHAENGDMVFE 200
Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
++ + T + +RP + E A + +A ++IVH+
Sbjct: 201 GQKKMLEMGIT----GPEGHELSRPEALEAEATNRAIVIADSV-------CTPVYIVHVQ 249
Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKE 294
+ + D++ + + G + E L + + D F PPIR D K
Sbjct: 250 -SIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKG 308
Query: 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 353
L + L G +D + +D+ + K + + +F K G++ ++ + + W G +
Sbjct: 309 VLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKL 368
Query: 354 TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
T Q S A++ KG I +G D+V+W+P + D H +
Sbjct: 369 TWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDT-HHHAVD-FNI 426
Query: 413 YLGRRLSGKVLATISRGNLVYKEGN 437
+ G +++G + TI GN+V+ +
Sbjct: 427 FEGIKVTGIAVTTIVAGNIVWSDNK 451
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 327 bits (839), Expect = e-107
Identities = 108/516 (20%), Positives = 186/516 (36%), Gaps = 95/516 (18%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG---FP 62
+ + G + I + D S+ V+D A I PG ID H H+D+P + +
Sbjct: 23 IAVNNGKVQLIAASIDPSLGSE---VIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTME 79
Query: 63 SGTKAAAAGGITTLIDMPLN----SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 118
T++A AGG TT++ PS ++ + +E+ +Y D G L
Sbjct: 80 HATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIE 139
Query: 119 AYNASALE--------ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 170
+ A E A + GV +K FM G+ + I + +
Sbjct: 140 KPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL----QISDYDIMSAMYATRKNGFTT 195
Query: 171 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226
++HAE ++ E + + +RP E A +T+A
Sbjct: 196 MLHAENGDMVKWMIEALEE-----QGLTDAYYHGVSRPSIVEGEATNRAITLATTM---- 246
Query: 227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-------------- 272
+ VH+S + + +++ +A+T G + ETCP Y S
Sbjct: 247 ---DTPILFVHVS-SPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYG 302
Query: 273 ----------------EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 316
+ +++ C+PPIR ++ +W+ + +G ++ SDH
Sbjct: 303 VGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYN 362
Query: 317 PELK-------------LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASW 361
K G F G+ + +P+ + YG G ++ +L
Sbjct: 363 YYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEI 422
Query: 362 WSERPAKLAG-QVSKGAIAIGN-HADLVVWEPEAEFELDNDHPV-------HMKHPSISA 412
PAK+ G KG+I G ADLV+W P+ + N P +
Sbjct: 423 QCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCD-YTP 481
Query: 413 YLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 447
+ G + TI +G +VYKEG A G +
Sbjct: 482 FEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 517
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 240 bits (616), Expect = 3e-75
Identities = 107/453 (23%), Positives = 189/453 (41%), Gaps = 71/453 (15%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ I I I + ++D + PG +DVH HL +PG E +GT
Sbjct: 20 ILIDGKVIKQIAPAIEPSNGV---DIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGT 76
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
KAAA GG TT+ MP N+ P S E + + V V G + +
Sbjct: 77 KAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVD 135
Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
AL+ G +D + AS + EG+ A+ + ++ H E
Sbjct: 136 -------FPALVKEGAFAFT--------DDGVGVQTASMMYEGMIEAAKVNKAIVAHCE- 179
Query: 177 EKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEEAAI-RELLTVAKDTRTDGP 227
D++L RS + P E I R++L +A+
Sbjct: 180 -----------DNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVL-LAEAA----- 222
Query: 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287
G H H+ H+S S + ++ +AK G +T E PH+L + ++IP + +K PP+
Sbjct: 223 --GCHYHVCHVSTKES-VRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPL 279
Query: 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347
R ++E L E L+DG ID +++DH+P + K KA GI + P+ +++
Sbjct: 280 RSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQP---MEKAPFGIVGSETAFPLLYTH 336
Query: 348 -GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 406
+ TL+QL + + +P + + G + +ADL + + ++E E+ +
Sbjct: 337 FVKNGDWTLQQLVDYLTIKPCETFN-LEYGTLKENGYADLTIIDLDSEQEIKGE-----D 390
Query: 407 HPSISA---YLGRRLSGKVLATISRGNLVYKEG 436
S + ++G ++ G + T+ G + ++
Sbjct: 391 FLSKADNTPFIGYKVYGNPILTMVEGEVKFEGD 423
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 241 bits (618), Expect = 5e-75
Identities = 120/450 (26%), Positives = 203/450 (45%), Gaps = 71/450 (15%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ ++ G I I +++D ++ PG ID+H HL DPG+T E SG+
Sbjct: 69 ILVENGKIKKIDKNIL----VPEAEIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGS 124
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
+ A AGG TT++ MP N++P +T + + ++ V G G + +
Sbjct: 125 RCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIAD 183
Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
+L AG + +D P+ ++S +++ L + ++ P++ H E
Sbjct: 184 -------FYSLKEAGCVAFT--------DDGSPVMDSSVMRKALELASQLGVPIMDHCE- 227
Query: 177 EKGSERHVKLEDDTL-------DTRSYSTYLKTRPPSWEEAAI-RELLTVAKDTRTDGPA 228
DD L S L +R P EE I R+ + +A+ T
Sbjct: 228 -----------DDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGI-LAQRT------ 269
Query: 229 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 288
G H+HI H+S S L+++ K G IT E P++L F+ E+ + + PP+R
Sbjct: 270 -GGHVHIQHVSTKLS-LEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLR 327
Query: 289 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 348
++ L E + G ID ++DH+P K L A GI LQ LP
Sbjct: 328 KKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGIIGLQTALPSALELY 383
Query: 349 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 408
RK ++L++L ++ PA++ G V G + +G+ AD+ +++P E+ L+ + +
Sbjct: 384 RKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADITIFDPNKEWILNEE-----TNL 437
Query: 409 SISA---YLGRRLSGKVLATISRGNLVYKE 435
S S G+ L GKV+ TI G +VYK+
Sbjct: 438 SKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 240 bits (614), Expect = 7e-75
Identities = 115/454 (25%), Positives = 195/454 (42%), Gaps = 72/454 (15%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ +++G I + + +V+D +I PGL+DVH HL +PG E +GT
Sbjct: 22 LLVQDGKIAKVAENIT----ADNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGT 77
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
AAA GG TT+ MP N+ P E ++ + +++ +V+V G + +
Sbjct: 78 LAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTD 136
Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
E L G +D + +AS + + A+ ++ H E
Sbjct: 137 -------FETLKELGAFAFT--------DDGVGVQDASMMLAAMKRAAKLNMAVVAHCE- 180
Query: 177 EKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEEAAI-RELLTVAKDTRTDGP 227
++TL S L P E I R++L +A+
Sbjct: 181 -----------ENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDIL-LAEAA----- 223
Query: 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287
H H+ H+S S + ++ +AK G +T E PH+L ++IP D FK PP+
Sbjct: 224 --DCHYHVCHVSTKGS-VRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPL 280
Query: 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347
R + E L E L+DG IDM+++DH+P E K +A GI+ + P+ ++
Sbjct: 281 RGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQG---IERAPFGITGFETAFPLLYTN 337
Query: 348 -GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 406
+K +TLEQL + +E+PA G + G + G AD+ + + E E E+D
Sbjct: 338 LVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRTADITIIDLEQEEEIDPT-----T 391
Query: 407 HPSISA---YLGRRLSGKVLATISRGNLVYKEGN 437
S + G + G + TI G + +++ +
Sbjct: 392 FLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 230 bits (590), Expect = 2e-71
Identities = 124/453 (27%), Positives = 188/453 (41%), Gaps = 70/453 (15%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V I EG I+S+ E QVVD + PG +D+HAHL +PG E SG
Sbjct: 21 VLIGEGRILSLEGGEA-------KQVVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGL 73
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
AA GG T L+ MP N+ P + E ++ + A+ + G +
Sbjct: 74 LAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTP 132
Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
L AG + L +D +A + GL + A P+ VHAE
Sbjct: 133 -------AGLLREAGAVLLT--------DDGRTNEDAGVLAAGLLMAAPLGLPVAVHAE- 176
Query: 177 EKGSERHVKLEDDTLDTR------SYSTY--LKTRPPSWEEAAI-RELLTVAKDTRTDGP 227
D L + L PP E A I R+L + R
Sbjct: 177 -----------DAGLRRNGVMNDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRR--S 223
Query: 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287
LH+ HLS L+L+ EAK G +T E PH+L + E + D FK APP+
Sbjct: 224 PATPRLHVQHLSTKRG-LELVREAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPL 282
Query: 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347
R ++E L E L+DG +D +++DH+P K D L+A GI SL+ P+ ++
Sbjct: 283 RGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKD---LLRAPFGIPSLEVAFPLLYTE 339
Query: 348 -GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 406
K G L++L +++ P ++ G + + G A LV+ P+ E +D
Sbjct: 340 LHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEEGAEASLVLLSPK-ERPVDPS-----A 392
Query: 407 HPSISA---YLGRRLSGKVLATISRGNLVYKEG 436
S + + G L G + T+ G +V++
Sbjct: 393 FASKARYSPWAGWVLGGWPVLTLVAGRIVHEAL 425
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 110 bits (277), Expect = 7e-27
Identities = 60/439 (13%), Positives = 124/439 (28%), Gaps = 87/439 (19%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
V + G II++ S VVD ++ PG ID H HL G
Sbjct: 25 ICDVLVANGKIIAVASNIPSD-IVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTR 83
Query: 63 SGTKAAAA---GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 119
+ A + G+T+++ + +D + E+L K A + G +
Sbjct: 84 TPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSR 142
Query: 120 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 179
++E + + + + A + ++ A + L+ K
Sbjct: 143 TITGSVEKDVAI----IDRVIGVKCAISDHRSAAPDVYHLANMAAESRVGGLLG---GKP 195
Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
+ D + A++ + + ++ + L H++
Sbjct: 196 GVTVFHMGD-------------------SKKALQPIYDLLENCDV----PISKLLPTHVN 232
Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA-ANKEKLWE 298
+ +E G +I + + P+ A +
Sbjct: 233 RNVPLFEQALEFARKGGTIDITS-------------------SIDEPVAPAEGIARAVQA 273
Query: 299 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 358
+ + + S + + G++ + +L + Y ++
Sbjct: 274 GIPLARVTLSSDGNGSQP-----FFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDA 328
Query: 359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 418
+ A KG I GN ADL+V PE
Sbjct: 329 LRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELR------------------------ 364
Query: 419 SGKVLATISRGNLVYKEGN 437
+ +RG L+ K+G
Sbjct: 365 ---IEQVYARGKLMVKDGK 380
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 98.5 bits (245), Expect = 1e-22
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 102/453 (22%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
+ +++G I +I EE ++D + + PGL+D H H+ +
Sbjct: 26 TIVVEDGLIAAIGGEELMKDAGDA-TIIDAAGSTVTPGLLDTHVHVSGGDYAPRQKTMDF 84
Query: 65 TKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEKRIYVDV-----GFWGGLV 115
+A GG+TT+I P K K Y G ++
Sbjct: 85 ISSALHGGVTTMISAG---SPHFPGRPKDAAGTKALAITLSKSYYNARPAGVKVHGGAVI 141
Query: 116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175
E + GV + I + + ++ + +H
Sbjct: 142 LEKGLTEEDFIEMKKEGVWIVGEVG-LGTIKNPED-----AAPMVEWAHKHGFKVQMHTG 195
Query: 176 MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 235
DD + T+ P +++E+ + +T + I
Sbjct: 196 GTSIPGSSTVTADDVIKTKPDVVSHINGGP--TAISVQEVDRIMDET-------DFAMEI 246
Query: 236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 295
V + + + A G + F +
Sbjct: 247 VQCGNPKIADYVARRAAEKG-------QLGRVIFGNDAPSGTG----------------- 282
Query: 296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355
+ G + ++ +
Sbjct: 283 ---LIPLGILRN----------MCQIA--------------------------SMSDIDP 303
Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
E + + G ++ G IA G ADL++ +D + + G
Sbjct: 304 EVAVCMATGNSTAVYG-LNTGVIAPGKEADLII--------MDTPLGSVAEDAMGAIAAG 354
Query: 416 RRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448
+ + G V + + P A + +
Sbjct: 355 DIPG--ISVVLIDGEAVVTKSRNTPPAKRAAKI 385
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 92.8 bits (230), Expect = 2e-20
Identities = 77/430 (17%), Positives = 133/430 (30%), Gaps = 77/430 (17%)
Query: 8 IKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------MPGLIDVHAHLDDPGRTEW 58
+K+G I+ I D +V VI G ID H H +
Sbjct: 89 VKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFIN------ 142
Query: 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETLKLKVDAAEKRIYVDVGFWG 112
P A A GITTL + +T ++ + + E + ++VG G
Sbjct: 143 ---PDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILG 198
Query: 113 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 172
+ + + + ++AG GLK D+ T A I L+V + +
Sbjct: 199 KG---HGSSIAPIMEQIDAGAAGLKIHE------DWGATPA-SIDRSLTVADEADVQVAI 248
Query: 173 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232
H++ + +DTL + E A + G
Sbjct: 249 HSD----TLNEAGFLEDTLRAINGRV---IHSFHVEGAGGGHAPDIMAMA-------GHP 294
Query: 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGDTRFKCAPPIRDA 290
+ ++ + + E + IP+ D F + +
Sbjct: 295 NVLPSSTNP---------TRPFTVNTIDEHLDMLMVCHHLKQNIPE-DVAFADSRIRPET 344
Query: 291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 350
E + L G I M+S+D L+ W ++
Sbjct: 345 IAAEDILHDL--GIISMMSTDALAMGR-----AGEMVLRTWQTADKMKKQRGPLAEEKNG 397
Query: 351 YG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPE-----AEFELDNDHPV 403
L++ S ++ PA G G+I G ADLV+WEP+ A+ +
Sbjct: 398 SDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIA 457
Query: 404 H--MKHPSIS 411
+ + PS S
Sbjct: 458 YAQIGDPSAS 467
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 89.4 bits (221), Expect = 9e-20
Identities = 73/446 (16%), Positives = 129/446 (28%), Gaps = 103/446 (23%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ IKE I ++ + + + G ID H H + ++
Sbjct: 22 IAIKEKKIAAVAATISGSAKE---TIHLEPGTYVSAGWIDDHVHCFEKMALYYD---YPD 75
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
+ G+TT+ID + I + V++ WG + + + S +
Sbjct: 76 EIGVKKGVTTVIDAG-TTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKV 134
Query: 126 EALLNA--------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 177
+A L V+G+K+ M + I D +T K+ + PL+VH
Sbjct: 135 QASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQI--QQENQEIPLMVHIG-- 190
Query: 178 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 237
+ PP +E I L+ K G I+
Sbjct: 191 ------------------------SAPPHLDE--ILALM--EKGDVLTHCFNGKENGILD 222
Query: 238 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLW 297
+ D +A G + + +F+
Sbjct: 223 QATD-KIKDFAWQAYNKG--VVFDIGHGTDSFNFHVA----------------------E 257
Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
AL +G D + G + L T R G +
Sbjct: 258 TALREG-----------MKAASISTDIYIRNRENGPVYD----LATTMEKLRVVGYDWPE 302
Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 417
+ ++ PA+ KG + IG ADL ++ +AE + D G
Sbjct: 303 IIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTD------------SNGLT 350
Query: 418 LSG----KVLATISRGNLVYKEGNHA 439
+ + TI G + EG+H
Sbjct: 351 RVAKEQIRPIKTIIGGQIYDNEGHHH 376
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 82.7 bits (204), Expect = 3e-17
Identities = 82/415 (19%), Positives = 128/415 (30%), Gaps = 88/415 (21%)
Query: 6 VEIKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------MPGLIDVHAHLDDPGRT 56
+ IK+G I I D K V + G ID H H
Sbjct: 86 IGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFIS---- 141
Query: 57 EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETLKLKVDAAEKRIYVDVGF 110
P A A G+TT+I T +T LK + AAE+ +++GF
Sbjct: 142 -----PQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGF 195
Query: 111 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 170
NA N ++L + AG +G K D+ T S I L V +Y +
Sbjct: 196 LA---KGNASNDASLADQIEAGAIGFKIHE------DWG-TTPSAINHALDVADKYDVQV 245
Query: 171 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR------T 224
+H DTL+ EA E A R T
Sbjct: 246 AIH--------------TDTLN----------------EAGCVEDTMAAIAGRTMHTFHT 275
Query: 225 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE----EIPDGDTR 280
+G G I+ ++ + L T ++ E + I + D +
Sbjct: 276 EGAGGGHAPDIIKVAGEHNILPAS-TNPTIPFTVNTEAEHMDMLMVCHHKDKSIKE-DVQ 333
Query: 281 FKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 339
F + A ++ L + G + SSD + W +
Sbjct: 334 FADSRIRPQTIAAEDTLHD---MGAFSITSSDSQA-----MGRVGEVITRTWQTADKNKK 385
Query: 340 VLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVS-KGAIAIGNHADLVVWEPE 392
+++ S ++ PA G G++ +G ADLV+W P
Sbjct: 386 EFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPA 440
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 69.7 bits (170), Expect = 6e-13
Identities = 77/408 (18%), Positives = 129/408 (31%), Gaps = 70/408 (17%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI-------MPGLIDVHAHLDDPGR 55
K + +K+G I +I + + VI G ID H H P +
Sbjct: 83 KADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICPQQ 142
Query: 56 TEWEGFPSGTKAAAAGGITTLID---MPLNSDPSTISTE--TLKLKVDAAEKRIYVDVGF 110
E A G+TT++ P +T T ++ A + V++G
Sbjct: 143 AEE---------ALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGL 193
Query: 111 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 170
G N AL + AGV+GLK + I L+V +
Sbjct: 194 LGKG---NVSQPDALREQVAAGVIGLKIHEDWGATP-------AAIDCALTVADEMDIQV 243
Query: 171 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230
+H++ + +DTL T +++T P
Sbjct: 244 ALHSD----TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAH-----PNIL 294
Query: 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 290
L +++D ++ C H AE++ ++R +
Sbjct: 295 PSSTNPTLPYTLNTIDEHLDMLM--------VCHHLDPDIAEDVAFAESRIRRETIAA-- 344
Query: 291 ANKEKLWEALMD-GHIDMLSSDHSP--TVPELKL--LDEGNFLKAWGGISSLQFVLPVTW 345
+ L D G + SSD V E+ L + +K G L
Sbjct: 345 ------EDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGA------LAEE- 391
Query: 346 SYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPE 392
G +++ + ++ PA G G+I +G ADLVVW P
Sbjct: 392 -TGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSPA 438
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 68.6 bits (167), Expect = 8e-13
Identities = 62/434 (14%), Positives = 121/434 (27%), Gaps = 91/434 (20%)
Query: 16 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITT 75
I + + Q +D A I PG +D+H H+ G + ++ A G+TT
Sbjct: 46 IAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGT---DISIRPSECGAERGVTT 102
Query: 76 LIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 135
L+D + + + ++ + +RI A LN G +G
Sbjct: 103 LVDAGSAGEANF--HGFREYIIEPSRERIK---------------------AFLNLGSIG 139
Query: 136 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195
L + + D + I E + + + L V A
Sbjct: 140 LVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRAS-------------------- 179
Query: 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 255
SW ++ +AK + VH+ + + D ++E G
Sbjct: 180 -----HVITGSWGVTPVKLGKKIAKIL-------KVPMM-VHVGEPPALYDEVLEILGPG 226
Query: 256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSP 314
D +T H + D +G +D+ S
Sbjct: 227 DVVT-----HCFNGKSGSSIMEDEDLFNL-----------AERCAGEGIRLDIGHGGASF 270
Query: 315 TVPELKLLDEGNFL-------KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
+ + L ++ + L T S + E + + PA
Sbjct: 271 SFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPA 330
Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427
+ + + +G AD V++ D + + +RL + +
Sbjct: 331 SVIRLDMENRLDVGQRADFTVFDLV-------DADLEATDSNGDVSRLKRL-FEPRYAVI 382
Query: 428 RGNLVYKEGNHAPA 441
+ A
Sbjct: 383 GAEAIAASRYIPRA 396
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 59.7 bits (144), Expect = 6e-10
Identities = 52/336 (15%), Positives = 98/336 (29%), Gaps = 60/336 (17%)
Query: 45 DVHAHLDDPGRTEWEGFP-SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 103
D H HL R +G + I MP N P + E A +R
Sbjct: 14 DWHLHL----R---DGDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVE----AAVAYRQR 61
Query: 104 I------YVDVGFWGGLVPENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASH 155
I D ++ + + LE N G K + + + +T+
Sbjct: 62 ILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDA 121
Query: 156 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 215
I L + + PLLVH E+ E ++ +
Sbjct: 122 IMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIE--------------------SVM 161
Query: 216 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275
+ + + H++ + D + + + P +L F+ +
Sbjct: 162 EPLRQR------LTALKVVFEHITTKDA-ADYVRDGNER---LAATITPQHLMFNRNHML 211
Query: 276 DGDTR--FKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWG 332
G R C P ++ +++ L E + G L +D +P K G
Sbjct: 212 VGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCA----- 266
Query: 333 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 368
G + L + + L+ ++ S +
Sbjct: 267 GCFNAPTALGSYATVFEEMN-ALQHFEAFCSVNGPQ 301
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 54.3 bits (130), Expect = 4e-08
Identities = 78/461 (16%), Positives = 134/461 (29%), Gaps = 121/461 (26%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V + G + + + P ++VD + PG +D H+H+ G E +
Sbjct: 26 VLVSNGKVEKVGENIEDP----DAEIVDLTGKFLFPGFVDAHSHI---GLFEEGVGYYYS 78
Query: 66 --------------------------KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 99
+ A AGG+T+++ +P +++P +K +
Sbjct: 79 DGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSII 138
Query: 100 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 159
E+ I V GL G + + M A I++
Sbjct: 139 VEECI---VKDPAGLKM-------------AFGENPKRVYGERKQTPSTRMGTAGVIRDY 182
Query: 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 219
+ + Y + + ++G E + + R + I + +A
Sbjct: 183 FTKVKNYMKKKELA--QKEGKEFTETDLKMEVGEMVLRKKIPARMHAHRADDILTAIRIA 240
Query: 220 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 279
++ G +L I H ++A +L E K P
Sbjct: 241 EEF-------GFNLVIEHGTEAYKISKVLAEKKIP----------------VVVGPLLTF 277
Query: 280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 339
R K KL + G + L DH E + +
Sbjct: 278 RTKLELKDLTMETIAKLLKD---GVLIALMCDHPVIPLEFATVQAATAM----------- 323
Query: 340 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELD 398
+YG E L + PAK+ G + G+I G ADLVVW
Sbjct: 324 ----------RYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVW--------- 364
Query: 399 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
+ HP MK V G V++ H
Sbjct: 365 SGHPFDMKS-------------VVERVYIDGVEVFRREGHH 392
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 53.0 bits (128), Expect = 1e-07
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 19/107 (17%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH-------LDDPGRTE 57
AV I +G I S+ + P + A++ PG IDV + D
Sbjct: 20 AVVIADGLIKSVCPVAELPPE---IEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVS 76
Query: 58 WEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKVDAAEK 102
E KA G T + P+ I S E +K V +
Sbjct: 77 VETLEIMQKANEKSGCTNYL-------PTLITTSDELMKQGVRVMRE 116
Score = 35.6 bits (83), Expect = 0.028
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 28/85 (32%)
Query: 352 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 410
G+ L+++ + PA+ G + G +A G A+L D
Sbjct: 325 GIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTA--------FTPD---------- 366
Query: 411 SAYLGRRLSGKVLATISRGNLVYKE 435
K+ TI GN V +
Sbjct: 367 ---------FKITKTIVNGNEVVTQ 382
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 52.0 bits (125), Expect = 2e-07
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFP 62
+ I++G I + + N V+D IMPGLID+H H+ + P
Sbjct: 26 EILIEDGFIREVSDKPIKSSN---AHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP 82
Query: 63 SGTKAAAA---------GGITTLIDM 79
+ A G TT+ D
Sbjct: 83 NVLVTLRAVPIMRAMLRRGFTTVRDA 108
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 50.4 bits (121), Expect = 5e-07
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFP 62
V I I+ + N Q +D +MPG ID H H+ + P
Sbjct: 26 HVVIDGERIVEVTDRPVDLPN---AQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQP 82
Query: 63 SGTKAAAA---------GGITTLIDM 79
+ A + G T++ D
Sbjct: 83 NILAAIRSLPILDAMLSRGFTSVRDA 108
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 50.4 bits (120), Expect = 7e-07
Identities = 72/518 (13%), Positives = 132/518 (25%), Gaps = 145/518 (27%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
V ++ I ++ + +D V+ PG ID H H D
Sbjct: 43 VGVRGDRIAAVGDLSASS----ARRRIDVAGKVVSPGFIDSHTHDD--NYLLKHR---DM 93
Query: 66 KAAAAGGITTLID------------------MPLNSDPSTISTETLKLKVDAAEKRIYVD 107
+ G+TT++ + L + + ++A
Sbjct: 94 TPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPA- 152
Query: 108 VGFWGGLVPENAYNASA-------------------LEALLNAGVLGLKSFMCPSGINDF 148
+V + A+ + L +G +G +G
Sbjct: 153 -VNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIG-----ISTGAFYP 206
Query: 149 PMTNASH--IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206
P +AS I E L + H E
Sbjct: 207 PAAHASTEEIIEVCRPLITHGGVYATHMRDE---------------------------GE 239
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGDSI 258
A+ E + ++ + I H L L+ A + D +
Sbjct: 240 HIVQALEETFRIGREL-------DVPVVISHHKVMGKLNFGRSKETLALIEAAMASQD-V 291
Query: 259 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG------HIDMLSSDH 312
+++ P Y+A S D E L + + +
Sbjct: 292 SLDAYP-YVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPEL 350
Query: 313 SPTVPELKLLDEGNFLKAWG---------GISSLQFVLPVTWS--------YGRKYGV-T 354
P ++DE + + G+ + P W Y R G+
Sbjct: 351 QPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGTFPRVLGHYSRDLGLFP 410
Query: 355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE-----AEFELDNDHPVHMKHPS 409
LE + A G +G + G +ADLVV++P A FE + +
Sbjct: 411 LETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSATFEHPTERAAGIHS-- 468
Query: 410 ISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
G V+++ + G +
Sbjct: 469 ---------------VYVNGAAVWEDQSFTGQHAGRVL 491
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 49.3 bits (118), Expect = 1e-06
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 33/126 (26%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDP-- 53
+ + +G I + E ++ + +I+PG ID H HL +
Sbjct: 37 LMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYGEQLL 96
Query: 54 ----GRT--EWEGFPS------GTKAAAA----GGITTLIDMPLNSDPSTISTETLKLKV 97
E + G K G TT ++ S +
Sbjct: 97 PWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAF------TSSSPVATEELF 150
Query: 98 DAAEKR 103
+ A +R
Sbjct: 151 EEASRR 156
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 49.3 bits (118), Expect = 2e-06
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFPSGTKA 67
I+ + N+K V+ + +++PGL+D H H+ +D E S
Sbjct: 31 RNGKIAEIG----KINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGT 86
Query: 68 AAA---------GGITTLIDM 79
G TT+ ++
Sbjct: 87 VWGVVNAEKTLMAGFTTVRNV 107
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 49.2 bits (117), Expect = 2e-06
Identities = 82/437 (18%), Positives = 136/437 (31%), Gaps = 81/437 (18%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ +++G I +I P D ++ PG IDVH H D + +
Sbjct: 29 LGVRDGRIAAIGELGAHP----ARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWK-- 82
Query: 66 KAAAAGGITTLIDM-----------------PLNSDPSTISTETLKLKVDAAEKR-IYVD 107
+ GITT++ L T + A + + ++
Sbjct: 83 ---TSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMIN 139
Query: 108 VGFWGGLVPENAYNASA-------------------LEALLNAGVLGLKSFMCPSGINDF 148
V LV +A L+A L AG +G + +
Sbjct: 140 VAA---LVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAY-----Q 191
Query: 149 PMTNAS--HIKEGLSVLARYKRPLLVHAEMEKGS-----ERHVKLEDDTLDTRSYSTYLK 201
P A ++ V A +R H E E + + T S +
Sbjct: 192 PGAVAQAAELEGLARVAAERRRLHTSHIRNEADGVEAAVEEVLAIGRGTGCATVVSHHKC 251
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 261
P +W R L R G ++ SS L+ E D I +
Sbjct: 252 MMPQNWGR--SRATLANIDRAREQGVEVALDIY----PYPGSSTILIPERAETIDDIRIT 305
Query: 262 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID-----MLSSDHSPTV 316
+ S E + D R+ C AA + A+ + +
Sbjct: 306 WSTPHPECSGEYLADIAARWGCDKT--TAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVG 363
Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSK 375
+ D + WG S VL Y R+ + TLEQ + + PA++ G +
Sbjct: 364 SDGLPNDARPHPRLWG---SFTRVLG---RYVREARLMTLEQAVARMTALPARVFGFAER 417
Query: 376 GAIAIGNHADLVVWEPE 392
G + G AD+VV++P+
Sbjct: 418 GVLQPGAWADVVVFDPD 434
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 49.1 bits (118), Expect = 2e-06
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
AV + G I++++ D + V +A +MPGL++ H H DD
Sbjct: 37 AVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVADDLPL 96
Query: 56 TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
W E GT A A GG T + +
Sbjct: 97 MVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNEN 139
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 48.8 bits (117), Expect = 2e-06
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---DDPGRTEWEGF 61
V + +G I SI + D VD ++PGLID+H HL + G +
Sbjct: 24 LVIVTDGRITSIGKKGDAV--PAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEY 81
Query: 62 PSGTKAAAA---------GGITTLIDM 79
+ G TT+ ++
Sbjct: 82 SDRFWSVVQTANAKKTLEAGFTTVRNV 108
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 48.5 bits (116), Expect = 2e-06
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---DDPGRTEWEGFPSGTK 66
+GNIIS + + ++ +D + ++PGL+D+H H +
Sbjct: 33 DGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPIKVEREMQ 91
Query: 67 AAAA---------GGITTLIDM 79
A A G TT+ +
Sbjct: 92 AILATQHAYVTFKSGFTTVRQV 113
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group.,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus thuringiensis
serovarkonkukian}
Length = 81
Score = 44.1 bits (105), Expect = 3e-06
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
A+ I +G I ++ +E ++ + +D +PGL D H H+
Sbjct: 25 AIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHV 70
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 47.6 bits (114), Expect = 4e-06
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH----LDDPGRTEWEG 60
AV I I ++ E P VVD A + PG ID+ + + E
Sbjct: 23 AVIINGDKIEAVCPIESLPSE---MNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAET 79
Query: 61 FPSGTKAAAAGGITTLIDMPLNSDPSTIS 89
+ KA G T+ + P+ I+
Sbjct: 80 IDTMHKANLKSGCTSFL-------PTLIT 101
Score = 31.4 bits (72), Expect = 0.56
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 28/83 (33%)
Query: 352 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 410
G+ L++ + PAK G G I G A+L V D D
Sbjct: 325 GIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTV--------FDRD---------- 366
Query: 411 SAYLGRRLSGKVLATISRGNLVY 433
V AT+ G
Sbjct: 367 ---------FNVKATVVNGQYEQ 380
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 47.2 bits (112), Expect = 7e-06
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE----- 59
A+ + EG I ++V +D D ++ PGLID H HL G E
Sbjct: 31 ALGVHEGRIHALVPMQDLKG-PYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEEFELRQ 89
Query: 60 -GFPSGTKAAAAGGITTLI 77
G P A GGI + +
Sbjct: 90 KGVPYAEIARKGGGIISTV 108
Score = 32.5 bits (74), Expect = 0.25
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
G + +G AD +VW + HP +S +G +++ + G
Sbjct: 365 GQLRVGMLADFLVW--------NCGHPAE-----LSYLIGVDQ---LVSRVVNGEETLHG 408
Query: 436 GNH 438
H
Sbjct: 409 EGH 411
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 47.1 bits (112), Expect = 8e-06
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 57
+ + I V+ +D ++MPGLI+ H HL G+
Sbjct: 35 TIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPL 87
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 47.0 bits (112), Expect = 8e-06
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD------------- 51
V + + + ++ R + AVI P ++ H HLD
Sbjct: 58 GVVVVGETVAAAGHPDE-LRRQYPHAAEERAGAVIAPPPVNAHTHLDMSAYEFQALPYFQ 116
Query: 52 ------DPGRTEWEGFPSGTKAAAA----GGITTLIDM 79
GR + +A A G + D+
Sbjct: 117 WIPEVVIRGRHLRG--VAAAQAGADTLTRLGAGGVGDI 152
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 46.6 bits (110), Expect = 1e-05
Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 17/149 (11%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
+ I I S+ QV+D G A + PGLID H H++ T +
Sbjct: 57 IGIVGALIASVHEPASRRDA---AQVIDAGGAYVSPGLIDTHMHIESSMIT-PAAY---A 109
Query: 66 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY----- 120
A A G+TT++ P + + ++ A E + VP
Sbjct: 110 AAVVARGVTTIVWDPH-EFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGG 168
Query: 121 ---NASALEALLNAG-VLGLKSFMCPSGI 145
+A+ L LL+ + G+ M G+
Sbjct: 169 ADFDAAILADLLSWPEIGGIAEIMNMRGV 197
Score = 30.8 bits (69), Expect = 1.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
+YG+ E + A+ G+ G IA G AD+VV+E F
Sbjct: 314 RYGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIVVFEDLNGFS 360
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 46.3 bits (110), Expect = 1e-05
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
V I E I+ + + +++D ++ PGL+D H HL
Sbjct: 39 VVGIHEQKIVFAGQKGAEAG-YEADEIIDCSGRLVTPGLVDPHTHL 83
Score = 29.3 bits (66), Expect = 2.4
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVLATISRGNLVYK 434
G + G ADLV+W + +++ Y G V + G +V
Sbjct: 372 GQLKAGRSADLVIW--------QAPNYMYI------PYHYGVNH---VHQVMKNGTIVVN 414
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 45.3 bits (108), Expect = 2e-05
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
+ + +G I S+ + P K ++D+ +I+PG+ D+HAH
Sbjct: 33 YIVVIDGKIASV--SSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHA 76
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 45.3 bits (107), Expect = 3e-05
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWE---- 59
+ ++ G I E D P + T + D G I P LID H HL G E
Sbjct: 41 VIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMR 100
Query: 60 --GFPSGTKAAAAGGITTLID 78
G A A GGI + +
Sbjct: 101 LNGATYEEIAKAGGGIVSSVR 121
Score = 28.0 bits (62), Expect = 8.0
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 432
G + G AD +W D + P + +G + A I +G V
Sbjct: 377 GTLEAGKSADFAIW--------DIERPAE-----LVYRIGFNP---LHARIFKGQKV 417
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 45.3 bits (108), Expect = 3e-05
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 26/96 (27%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGRTEW-- 58
+ I +I + E+ + V ++++PG + H HL W
Sbjct: 24 DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIPWLY 83
Query: 59 -----------EGFPSGTKAAAA----GGITTLIDM 79
+ + + G T + +
Sbjct: 84 SVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAI 119
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 45.2 bits (108), Expect = 3e-05
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 29/103 (28%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
A+ I++G I +I+ D + + ++ + V+MPGLI++H H DD
Sbjct: 29 AIAIRDGKIAAIIPAADAAGL-EADERLELPDHVLMPGLINLHGHSAMSLLRGLADDKAL 87
Query: 56 TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
+W + G+ A GG TT+ DM
Sbjct: 88 MDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDM 130
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 44.9 bits (106), Expect = 4e-05
Identities = 66/447 (14%), Positives = 119/447 (26%), Gaps = 86/447 (19%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-----DPGRTEWEG 60
+ I II I ++ + +D ++ PG +D H H+D R
Sbjct: 23 IGIVGDRIIKIEAKIEGT----VKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFW 78
Query: 61 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYVDVGFWGGLV 115
T+ AA I + N+ I ++ R +VDV
Sbjct: 79 SRPYTRDAA---IEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTK 135
Query: 116 PENAYNASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174
A + E ++ ++ SG + S I++ L + +
Sbjct: 136 AVEAVLEAKEEL---KDLIDIQVVAFAQSGFFVDLES-ESLIRKSLDMGCDLVGGVDPAT 191
Query: 175 EMEKGSERHVKLEDDTLDT-RSYSTYLKTRPPSWEEAAIRELLTVAKDTRT---DGPAEG 230
E E + D + Y + + + +A+ T G
Sbjct: 192 -RENNVEGSL---DLCFKLAKEYDVDIDYHIHDIGTVGVYSINRLAQKTIENGYKGRVTT 247
Query: 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP-IRD 289
+H + + + + K +G ++ + CA IRD
Sbjct: 248 SHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSSTPPTMPVIKLLEAGINLGCASDNIRD 307
Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349
W +G DM+ A L+
Sbjct: 308 F------WVPFGNG--DMVQ-------------------GALIETQRLELKTNRD----- 335
Query: 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 409
L + + A++ G I +G ADLVV + D
Sbjct: 336 -----LGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQWAIIDQA------- 383
Query: 410 ISAYLGRRLSGKVLATISRGNLVYKEG 436
K L I G ++ K+
Sbjct: 384 -----------KRLCVIKNGRIIVKDE 399
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 44.9 bits (107), Expect = 4e-05
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 29/103 (28%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
A+ I++G I + E R+ T ++ + ++ PGL++ H H DD
Sbjct: 31 ALGIRDGQIALVAPREQAMRHGAT-EIRELPGMLLAPGLVNAHGHSAMSLFRGLADDLPL 89
Query: 56 TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
W + GT+ A A GGIT DM
Sbjct: 90 MTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDM 132
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 44.5 bits (106), Expect = 4e-05
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH------LDDPGRTEW 58
V I +G I ++ +E P+ + ++ ++V++PG+ID+H H D +
Sbjct: 23 YVGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDA---SF 77
Query: 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 89
+ G T+ + +TI+
Sbjct: 78 STLDIMSSRLPEEGTTSFL-------ATTIT 101
Score = 35.3 bits (82), Expect = 0.036
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 28/84 (33%)
Query: 352 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 410
+ +A+ SE AK G KG++ +G ADLV+ + +D
Sbjct: 333 NCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVI--------VSSDC--------- 375
Query: 411 SAYLGRRLSGKVLATISRGNLVYK 434
+V+ TI RGN+ +
Sbjct: 376 ----------EVILTICRGNIAFI 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-04
Identities = 50/298 (16%), Positives = 90/298 (30%), Gaps = 98/298 (32%)
Query: 13 IISIV-SEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAG 71
I+ S E + + + +A+ + I V + P + PS + +
Sbjct: 282 AIAETDSWESFFVSVR--------KAITVLFFIGVRCYEAYPNTSLP---PSILEDSLEN 330
Query: 72 GITTLIDMPLNSDPST------ISTETLKLKVDA------AEKRIYVDVGFWGGLVPENA 119
PS ++ E ++ V+ A K++ + LV N
Sbjct: 331 NEGV---------PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI------SLV--NG 373
Query: 120 YN-------ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK----------EGLSV 162
+L L L L+ PSG++ S I L V
Sbjct: 374 AKNLVVSGPPQSLYGL----NLTLRKAKAPSGLD------QSRIPFSERKLKFSNRFLPV 423
Query: 163 LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 222
+ + LLV A + +D L S+ I+ + V DT
Sbjct: 424 ASPFHSHLLVPAS-------DLINKD-----------LVKNNVSFNAKDIQ--IPV-YDT 462
Query: 223 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 280
G+ L ++ S + +D ++ ++ T H L F P G +
Sbjct: 463 FD-----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG----PGGASG 511
Score = 38.5 bits (89), Expect = 0.005
Identities = 46/286 (16%), Positives = 90/286 (31%), Gaps = 96/286 (33%)
Query: 34 YGEAV--IM---PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG--ITTLIDMPLNSDPS 86
YG ++ I+ P + +H + G+ E + + G T I +N +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEK-GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 87 TIS----TETLKLK------VDAAEKRIYVDVGFWGGLVPENAYNA-------SALEALL 129
+ + L + EK + D+ G L+P +A A +AL +L
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-LIPADATFAGHSLGEYAALASL- 1773
Query: 130 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 189
A V+ S + + V+ + R + + + +
Sbjct: 1774 -ADVM---SI-----------------ESLVEVV--FYRGMTMQVAVPRDELGR------ 1804
Query: 190 TLDTRSYSTY--LKTRP----PSWEEAAIRELL-TVAKDTRTDGPAE------------- 229
S Y + P S+ + A++ ++ V K RT E
Sbjct: 1805 -------SNYGMIAINPGRVAASFSQEALQYVVERVGK--RTGWLVEIVNYNVENQQYVA 1855
Query: 230 -GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 274
G + L ++ L+ + K I + + S EE+
Sbjct: 1856 AG---DLRALDTVTNVLNFIKLQK-----IDIIELQK--SLSLEEV 1891
Score = 32.7 bits (74), Expect = 0.30
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 29/139 (20%)
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGD--SI 258
TRP + ++ +L V P + L + + L E D +
Sbjct: 6 TRPLTLSHGSLEHVLLV--------PT-ASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 259 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD--HS--- 313
E +L + + + + L L + L + H+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKV----------GQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 314 --PTVPELKLLDEGNFLKA 330
+ L+ +K
Sbjct: 107 KLLQENDTTLVKTKELIKN 125
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 42.6 bits (101), Expect = 2e-04
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 30/103 (29%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
+ IK+G I++I + + + +D G+ V+MPG ++ H H DD
Sbjct: 52 CLLIKDGIILAIEPQSSCQIPAT--ETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPL 109
Query: 56 TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
W GT+ A A G TT DM
Sbjct: 110 MTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADM 152
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 42.6 bits (101), Expect = 2e-04
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 46/166 (27%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL-----------DDP 53
+ I I+++ + + +D + +PGLI+ H HL +
Sbjct: 24 DILIDGPKIVAVGKDLSDRS---VSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERV 80
Query: 54 GRTEW--------EGFPS-----------GTKAAAA----GGITTLIDMPLNSDPSTIST 90
W G+ +A GGITT+ D P +
Sbjct: 81 TMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQ-HLFFPGATAD 139
Query: 91 ETLKLKVDAAEK--------RIYVDVGFWGGLVPENAYNASALEAL 128
+ ++AA R + +G G ++ + +
Sbjct: 140 SYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRVV 185
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 42.2 bits (100), Expect = 3e-04
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLDDPGRT 56
+ I ++ R ++ +++D +MP D H HLD+ G +
Sbjct: 57 GLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMS 110
Score = 31.1 bits (71), Expect = 0.85
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 20/71 (28%)
Query: 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
A++ G + G A+ ++ + + E+ + T
Sbjct: 474 SAQVTLAEDLGKLERGFRAEYIILDRDPLKEMKGI--------------------ITITT 513
Query: 426 ISRGNLVYKEG 436
+ V K
Sbjct: 514 DPNSSSVDKLA 524
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 41.9 bits (98), Expect = 3e-04
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
+ +++G I +I ++ T +D + +++P ++ H HLD
Sbjct: 26 IHLQDGKISAIDAQSGVM--PITENSLDAEQGLVIPPFVEPHIHLD 69
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 41.8 bits (99), Expect = 3e-04
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 30/103 (29%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL-----------DDP 53
+ I++ I+++ + P +V+D +++PGL++ H H+ +
Sbjct: 53 GLYIEDNRIVAVGPSAELPE--TADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQNA 110
Query: 54 GRTEW-------------EGFPSGTKAAAA----GGITTLIDM 79
W E T A A G TT D
Sbjct: 111 ELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDH 153
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 41.8 bits (99), Expect = 4e-04
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 34/102 (33%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
AVEI+ G I ++ E +D ++MP L + H H +D
Sbjct: 20 AVEIENGTIKRVLQGEV-------KVDLDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSF 72
Query: 56 TEW--------------EGFPSGTKAAAA----GGITTLIDM 79
EW + GT A GI +DM
Sbjct: 73 EEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDM 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 45/343 (13%), Positives = 95/343 (27%), Gaps = 90/343 (26%)
Query: 78 DMPLNSDPSTISTETLK--LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 135
DMP S +S E + + A FW LL+
Sbjct: 40 DMPK----SILSKEEIDHIIMSKDAVSGTLRL--FW---------------TLLSKQEEM 78
Query: 136 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195
++ F+ + N + + ++P + E+ +L +D +
Sbjct: 79 VQKFV-----EEVLRINYKFLMSPIK--TEQRQPSM---MTRMYIEQRDRLYNDN---QV 125
Query: 196 YSTYLKTRPPSWEE--AAIREL------------------LT--VAKDTRT-DGPAEGAH 232
++ Y +R + + A+ EL + V +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 233 -LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY--LAFSAEEIPDGDTRFKCAPP--- 286
L++ + + + L++L + D H + I R + P
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 287 ----IRDAANKEKLWEALMDGHIDML--SSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 340
+ + N K W A + +L + T +FL ++ +
Sbjct: 246 CLLVLLNVQNA-KAWNA-FNLSCKILLTTRFKQVT----------DFLS--AATTTHISL 291
Query: 341 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG---AIAI 380
+ + L + RP L +V ++I
Sbjct: 292 DHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 40.0 bits (94), Expect = 0.001
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 33/104 (31%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL-----------DDP 53
+ I I +I + P +VD + VI P ++ H HL D
Sbjct: 38 DIRIVGDTIDAIGALAPRP----GETIVDATDCVIYPAWVNTHHHLFQSLLKGEPAGLDA 93
Query: 54 GRTEW--------------EGFPSGTKAAAA----GGITTLIDM 79
T W F + G T+ D
Sbjct: 94 TLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADH 137
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 38.7 bits (91), Expect = 0.003
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 352 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 411
G ++ +LA S G +G IA G ADLV+ LD D
Sbjct: 319 GCSITELAKVSSYNSCVELGLDDRGRIAEGTRADLVL--------LDEDL---------- 360
Query: 412 AYLGRRLSGKVLATISRGNLVYK 434
V+ TI G +V++
Sbjct: 361 ---------NVVMTIKEGEVVFR 374
Score = 36.4 bits (85), Expect = 0.015
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
VEI+EG I+ + E V+MPG +D H H
Sbjct: 31 DVEIEEGKIVKVEKREC------------IPRGVLMPGFVDPHIH 63
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 35.4 bits (82), Expect = 0.034
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 5 AVEIKEGNIISIVSEEDWPR------NSKTGQVVDYGE-AVIMPGLIDVHAHL 50
+ + + I + E K ++ + MPGL+D H H
Sbjct: 55 LLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHA 107
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 34.5 bits (79), Expect = 0.075
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 21/115 (18%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 89
+V+ ++ G ID H H P A + GITTL+ T +
Sbjct: 390 EVIAGEGLIVTAGAIDCHVHYICPQLVY---------EAISSGITTLVGGGTGPAAGTRA 440
Query: 90 TET------LKLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 137
T ++L + + + + ++ GF G G ++ L ++ AG +GLK
Sbjct: 441 TTCTPSPTQMRLMLQSTD-DLPLNFGFTGKG----SSSKPDELHEIIKAGAMGLK 490
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 32.6 bits (75), Expect = 0.24
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 38/106 (35%)
Query: 5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
+ I G I SI + D ++V++ G+ ++H+H + G
Sbjct: 30 RIGIAGGVICSIETGVL-------AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGP 82
Query: 56 TEWEGFP------------------SGTKAAAA----GGITTLIDM 79
+ + + G T + +
Sbjct: 83 SADSFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEF 128
Score = 27.6 bits (62), Expect = 8.6
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 14/66 (21%)
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHM-KHPSISA--YLGRRLSGKVLATISRGNLV 432
+ G AD V D + H + + GR V RG
Sbjct: 385 DGLKKGASADFVSL--------DVERLPHAKGDVVLDGWIFAGR---AHVCDVWVRGVKQ 433
Query: 433 YKEGNH 438
+ G H
Sbjct: 434 VEGGRH 439
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 31.1 bits (70), Expect = 0.59
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 42 GLIDVHAHL----DDPGRTEWEGFPSGTKAAAAGGITTLIDMP------LNSDPSTISTE 91
G+ID+H+H+ DD G E + + G+ T++ + I+
Sbjct: 4 GMIDIHSHIVFDVDD-GPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAEN 62
Query: 92 TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL--KSFMCPSGINDFP 149
L+++ A E + + + G E Y L+ L + L + + +F
Sbjct: 63 FLQVREIAKEVASDLVIAY-GA---EIYYTPDVLDKLEKKRIPTLNDSRYA----LIEFS 114
Query: 150 MTNA-SHIKEGL-SVLARYKRPLLVHAEMEKGSERHVKL 186
M I L +L P++ H E E + K
Sbjct: 115 MNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKR 153
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 29.8 bits (67), Expect = 1.6
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 260 VETCPHYLAFSAEEIPDGDTRFKCAPPIRD---AANKEKLWEALMDGHIDMLSSDHSPTV 316
+ L DG+ P+R A +KL + L + ++ H V
Sbjct: 79 DKVDGPKLRREFL-HEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKV 137
Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 361
E +L FL G ++ + ++G YG A++
Sbjct: 138 HEDLMLPFDEFLALNGCEAARDLWINPFTAFG--YGHFDNVPAAY 180
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 8/85 (9%)
Query: 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 102
+ID H H+ P + G+ I + P T +K + +
Sbjct: 4 IIDGHTHVILPVEKHIKIM-------DEAGVDKTILFSTSIHPETAVN-LRDVKKEMKKL 55
Query: 103 RIYVDVGFWGGLVPENAYNASALEA 127
V+ +
Sbjct: 56 NDVVNGKTNSMIDVRRNSIKELTNV 80
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 29.6 bits (67), Expect = 1.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 34 YGEAVIMPGLIDVHAHLDDP 53
G + ID+ A+L D
Sbjct: 19 PGSMSMAQQFIDIGANLTDD 38
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 29.0 bits (66), Expect = 2.9
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 43 LIDVHAHLDDPGRTEW-EGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDA 99
L+D H HLD + AAA + + ++T + D
Sbjct: 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCL---------AVATTLPSYLHMRDL 53
Query: 100 AEKR--IYVDVGFWGGLV-PENAYNASALEALLN 130
+R + G V P N + +E L
Sbjct: 54 VGERDNVVFSCG-----VHPLNQNDPYDVEDLRR 82
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 29.0 bits (66), Expect = 3.1
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 40 MPGLIDVHAHLDDP 53
+ ID H H D P
Sbjct: 2 ICRFIDTHCHFDFP 15
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 28.8 bits (65), Expect = 3.7
Identities = 9/81 (11%), Positives = 19/81 (23%), Gaps = 31/81 (38%)
Query: 30 QVVDYGEAVIMPGLIDVHAHL---------DDPGRT-----EW-------------EGFP 62
+ ++PG+ ++H+H + G W E
Sbjct: 39 DGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIE 98
Query: 63 SGTKAAAA----GGITTLIDM 79
G T + +
Sbjct: 99 VIACQLYIEMLKAGYTAVAEF 119
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo
sapiens}
Length = 272
Score = 28.3 bits (64), Expect = 5.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 42 GLIDVHAHLDDP 53
GL+D H HL P
Sbjct: 5 GLVDCHCHLSAP 16
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 6.1
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 289 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT--WS 346
+ KE + E +++ D P + ++ F G + +
Sbjct: 916 NPEKKEMIQEVIVEE-------DLEPFEASKETAEQ--FKHQHGDKVDIFEIPETGEYSV 966
Query: 347 YGRKYGVTLEQLASWWSERPAKLAGQVSKG 376
K G TL +AGQ+ G
Sbjct: 967 KLLK-GATL--YIPKALRFDRLVAGQIPTG 993
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 28.4 bits (64), Expect = 6.4
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 97 VDAAEKRI----YVDVGFWGGLVPENAYNASALEALLN-------AGV-LGLKSFMCPSG 144
VD EN +A + + G + +K + +G
Sbjct: 44 VDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAG 103
Query: 145 INDFPMTNASHIKEG 159
+ PM N S EG
Sbjct: 104 V---PMMNGSRTVEG 115
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 27.8 bits (62), Expect = 6.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 40 MPGLIDVHAHLDDPG-RTEWEGFPSG 64
M G + + H P + GF G
Sbjct: 1 MQGKVALEEHFAIPETLQDSAGFVPG 26
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo
sapiens}
Length = 301
Score = 28.0 bits (63), Expect = 6.9
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 43 LIDVHAHLDDP 53
ID+ +L DP
Sbjct: 3 FIDIGINLTDP 13
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 27.9 bits (63), Expect = 7.4
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAA 100
++D HAHL + + + I ++ + E K +D +
Sbjct: 13 MVDTHAHLHFH--QFDDDRNAVISSFEENNIEFVV---------NVGVNLEDSKKSLDLS 61
Query: 101 EKR--IYVDVG 109
+ I+ VG
Sbjct: 62 KTSDRIFCSVG 72
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 27.5 bits (62), Expect = 8.8
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAA 100
LID H HL+D + A G+ + + T++ +
Sbjct: 2 LIDTHVHLNDEQ--YDDDLSEVITRAREAGVDRMF---------VVGFNKSTIERAMKLI 50
Query: 101 EKR--IYVDVG 109
++ +Y +G
Sbjct: 51 DEYDFLYGIIG 61
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 27.3 bits (61), Expect = 9.6
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 77
D H H + G +E GI +
Sbjct: 2 YFDSHLHSEGLGFSELV-------KLKENGIKEVC 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,147,669
Number of extensions: 450263
Number of successful extensions: 1136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 119
Length of query: 450
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 353
Effective length of database: 3,993,456
Effective search space: 1409689968
Effective search space used: 1409689968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.9 bits)