RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013050
(450 letters)
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 197 bits (501), Expect = 4e-60
Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 19/336 (5%)
Query: 42 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 99
G IDVH H++ + F + T AAA GG TT++D D E +
Sbjct: 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGM 59
Query: 100 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 159
A + +D G+ ++ LE L + G+ K FM M + + +
Sbjct: 60 AGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFM---AYRGMNMIDDVTLLKT 116
Query: 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 219
L + ++VHAE + +++ + + + +RPP E A L +A
Sbjct: 117 LDKAVKTGSLVMVHAENGDAA-DYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALA 175
Query: 220 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF---SAEEIPD 276
+ A ++IVH++ S + +M AK+ G ETC HYL E
Sbjct: 176 EIV-------NAPIYIVHVTCEESL-EEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF 227
Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGIS 335
++ PP R + + LW AL +G + +SSDH K +F G
Sbjct: 228 EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAP 287
Query: 336 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 371
++ L + + + ++L Q + RPAK+ G
Sbjct: 288 GVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFG 323
>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2
{Dictyostelium discoideum [TaxId: 44689]}
Length = 334
Score = 192 bits (489), Expect = 2e-58
Identities = 63/339 (18%), Positives = 114/339 (33%), Gaps = 20/339 (5%)
Query: 41 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
PG ID H H P G + F GT+AA AGG T +ID E
Sbjct: 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKK 59
Query: 99 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
A++++ D + + + +E L+ G+ SF C + M +
Sbjct: 60 WADEKVNCDYSLHVAITWWSEQVSREMEILVKER--GVNSFKCFMAYKNSFMVTDQEMYH 117
Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
VHAE + + + + +RP + E A + +
Sbjct: 118 IFKRCKELGAIAQVHAENGDMV-FEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVI 176
Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
A + + + D++ + + G + E L + + D
Sbjct: 177 ADSVC--------TPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHD 228
Query: 279 TRF-----KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 333
R P D K L + L G +D + +D+ + K + + +F K G
Sbjct: 229 WRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNG 288
Query: 334 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
++ ++ + + W G G +T Q S A++
Sbjct: 289 VNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFN 327
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 189 bits (481), Expect = 4e-57
Identities = 86/347 (24%), Positives = 141/347 (40%), Gaps = 20/347 (5%)
Query: 43 LIDVHAHLDDPGRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 100
ID H H+ P + + +G+KAA GG TT I+M + + E +L A
Sbjct: 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKA 59
Query: 101 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160
E Y D F + + L ++ G+ K F+ F + + + L
Sbjct: 60 EGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTL 116
Query: 161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 220
+ + H E + R + T + +RP + E T +
Sbjct: 117 RLAKELGVIVTAHCENAELVGRLQQKLLSEGKT-GPEWHEPSRPEAVEAEGTARFATFLE 175
Query: 221 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 278
T GA ++VHLS + D M AK G I +E+ + G
Sbjct: 176 TT-------GATGYVVHLSCKPAL-DAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE 227
Query: 279 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 337
++ +PP+RD N++ LW+AL G ID + +DH P E KLL + F GI ++
Sbjct: 228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAI 287
Query: 338 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGN 382
+ + + ++YG G + + + S + AKL G KG IA+G+
Sbjct: 288 EDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGS 334
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
{Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Length = 384
Score = 190 bits (483), Expect = 6e-57
Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 66/393 (16%)
Query: 42 GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNS---DPSTISTETLKL 95
G ID H H+D+P + + T++A AGG TT++ + E++KL
Sbjct: 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60
Query: 96 KVD-AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPM 150
VD +E+ +Y D G L + A E L + S
Sbjct: 61 DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQ 120
Query: 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 210
+ I + + ++HAE + ++ ++ T + +RP E
Sbjct: 121 ISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLT-DAYYHGVSRPSIVEGE 179
Query: 211 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 270
A +T+A + VH+S ++ +++ +A+T G + ETCP Y S
Sbjct: 180 ATNRAITLATTM-------DTPILFVHVSSPQAA-EVIKQAQTKGLKVYAETCPQYALLS 231
Query: 271 AEEIPDGD------------------------------TRFKCAPPIRDAANKEKLWEAL 300
+++ C+PPIR ++ +W+ +
Sbjct: 232 DAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGM 291
Query: 301 MDGHIDMLSSDHSPTVPELKLL-------------DEGNFLKAWGGISSLQFVLPVTWSY 347
+G ++ SDH K G F G+ + +P+ + Y
Sbjct: 292 NNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDY 351
Query: 348 GRKYG--VTLEQLASWWSERPAKLAG-QVSKGA 377
G G ++ +L PAK+ G KG+
Sbjct: 352 GYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384
>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 334
Score = 189 bits (480), Expect = 6e-57
Identities = 70/339 (20%), Positives = 117/339 (34%), Gaps = 20/339 (5%)
Query: 41 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
PG IDV+ +L P G T + F GTKAA AGG T +ID +P + + + +
Sbjct: 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHE 59
Query: 99 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
AA+ + D + LE L+ G+ SF D + S + E
Sbjct: 60 AADTKSCCDYSLHVDITSWYDGVREELEVLVQDK--GVNSFQVYMAYKDLYQMSDSQLYE 117
Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
+ L +LVHA + + + +RP E A+ + +
Sbjct: 118 AFTFLKGLGAVILVHA-ENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAI 176
Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE----- 273
A ++I + S++ D++ A+ G + E L
Sbjct: 177 AGRI-------NCPVYITKVMSKSAA-DIIALARKKGPLVFGEPIAASLGTDGTHYWSKN 228
Query: 274 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 333
P D + L L G + + S H P K + + NF G
Sbjct: 229 WAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEG 288
Query: 334 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
++ ++ + V W G + Q + S AK+
Sbjct: 289 VNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFN 327
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 179 bits (455), Expect = 2e-53
Identities = 90/338 (26%), Positives = 147/338 (43%), Gaps = 21/338 (6%)
Query: 42 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 99
G ID H HLD P G + F +GT+AAA GG T+++D + + +
Sbjct: 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEK 59
Query: 100 AEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKE 158
A + +D GF + N LE+++++ G+ LK FM + + + +
Sbjct: 60 ARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNV---FQADDETLFK 116
Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
L + VHAE ++ + + TRPP E A + +
Sbjct: 117 TLVKAKELGALVQVHAENGDVL-DYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIAL 175
Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
+ L++VH+S AS+ + EA+ G ++ ETCP YLA + D
Sbjct: 176 TALAG-------SQLYVVHVSCASAV-QRIAEAREKGWNVYGETCPQYLALDVSIMDQPD 227
Query: 279 ---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGI 334
++ +PP+R+ N+E LW AL +G + + SDH P K L G+F K G
Sbjct: 228 FEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGG 287
Query: 335 SSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
++ L + +S G + G ++L Q S + AKL G
Sbjct: 288 PLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFG 325
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 172 bits (437), Expect = 6e-51
Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 24/330 (7%)
Query: 42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
G ID+H HL DPG+T E SG++ A AGG TT++ MP N++P +T + + ++
Sbjct: 1 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSK 59
Query: 102 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161
V G + + + G +F + P+ ++S +++ L
Sbjct: 60 SVGLCRVLPTGTITKGR--KGKEIADFYSLKEAGCVAFTD----DGSPVMDSSVMRKALE 113
Query: 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 221
+ ++ P++ H E +K + + + + L +R P EE I +A+
Sbjct: 114 LASQLGVPIMDHCEDDKLAYGVINEGEVS-----ALLGLSSRAPEAEEIQIARDGILAQR 168
Query: 222 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 281
T + SL+++ K G IT E P++L F+ E+ +
Sbjct: 169 TG--------GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANA 220
Query: 282 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 341
+ PP+R ++ L E + G ID ++DH+P K L A GI LQ L
Sbjct: 221 RVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGIIGLQTAL 276
Query: 342 PVTWSYGRKYGVTLEQLASWWSERPAKLAG 371
P RK ++L++L ++ PA++ G
Sbjct: 277 PSALELYRKGIISLKKLIEMFTINPARIIG 306
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
[TaxId: 43663]}
Length = 325
Score = 161 bits (406), Expect = 3e-46
Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 21/335 (6%)
Query: 42 GLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 100
G++D H H+ D G F +++AA GGITT+I+MP + P T + + K A
Sbjct: 1 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQA 59
Query: 101 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160
+R+ VD +GG VP N + + +AG +G KS M S F + + E
Sbjct: 60 GQRLKVDFALYGGGVP---GNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIF 116
Query: 161 SVLARYKRPLLVHA---EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 217
+A ++VHA + + ++ +K + Y ++P E
Sbjct: 117 QEIAACGSVIVVHAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQE--------N 164
Query: 218 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 277
A E IV ++L+ +A++ G + E+ P YL + ++
Sbjct: 165 EAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI 224
Query: 278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 337
K APP+R A +LWE L +G ID L SDH E K + KA G L
Sbjct: 225 GPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGL 284
Query: 338 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
+ LP+ + G G ++LE+L E+PAKL G
Sbjct: 285 ETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFG 319
>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
562]}
Length = 343
Score = 102 bits (254), Expect = 9e-25
Identities = 32/329 (9%), Positives = 73/329 (22%), Gaps = 40/329 (12%)
Query: 45 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 104
D H HL D + I MP N P + E +
Sbjct: 11 DWHLHLRD------GDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAV 63
Query: 105 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 164
F + ++ L G+ + N ++
Sbjct: 64 PAGHDFTPLMTCYL-TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVT-------- 114
Query: 165 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 224
+ +E + + + T
Sbjct: 115 ---SVDAIMPVLE---RMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLT-- 166
Query: 225 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGDTRFK 282
+ H++ ++ + + + P +L F+ +
Sbjct: 167 -----ALKVVFEHITTKDAA----DYVRDGNERLAATITPQHLMFNRNHMLVGGVRPHLY 217
Query: 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 342
C P ++ +++ L E + G + S + + ++L
Sbjct: 218 CLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYAT 277
Query: 343 VTWSYGRKYGVTLEQLASWWSERPAKLAG 371
V L+ ++ S + G
Sbjct: 278 VFEEMN-----ALQHFEAFCSVNGPQFYG 301
>d2vhla2 c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Bacillus subtilis
[TaxId: 1423]}
Length = 301
Score = 91.8 bits (226), Expect = 3e-21
Identities = 31/334 (9%), Positives = 74/334 (22%), Gaps = 43/334 (12%)
Query: 42 GLIDVHAHL---DDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
G+ID+H H D + + G T+ + + ++ L +
Sbjct: 1 GMIDIHIHGGYGADTMDASFSTLDIMSSRLPEEGTTSFLATT-ITQEHGNISQALVNARE 59
Query: 99 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
+G + + ++ K+
Sbjct: 60 WKAAEESSLLGAELLGIHLE------GPFVSPKRAGAQPKEWI-------RPSDVELFKK 106
Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
+ + + E ++ E L+D+ + + +AA +
Sbjct: 107 WQQEAGGLIKIVTLAPEEDQHFELIRHLKDE--SIIASMGHTDADSALLSDAAKAGASHM 164
Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
A H ++ D E +
Sbjct: 165 THLY-------NAMSPFHHREPG------VIGTALAHDGFVTELIADGIHSH-PLAAKLA 210
Query: 279 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 338
K + + + + + S L + G ++
Sbjct: 211 FLAKGSSKLILITDSMRAKGLKDGVYEFGGQSVTV---------RGRTALLSDGTLAGSI 261
Query: 339 FVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG 371
+ + + +A+ SE AK G
Sbjct: 262 LKMNEGARHMREFTNCSWTDIANITSENAAKQLG 295
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
{Pseudomonas diminuta [TaxId: 293]}
Length = 331
Score = 89.4 bits (220), Expect = 3e-20
Identities = 51/350 (14%), Positives = 95/350 (27%), Gaps = 48/350 (13%)
Query: 42 GLIDVHAHLDDPGRTEWEGFP--------------SGTKAAAAGGITTLIDMPLNSDPST 87
G H H+ +P G + A A G+ T++D+ ++
Sbjct: 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDV--STFDIG 73
Query: 88 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 147
L AA+ I G W ++E L + ++ + +GI
Sbjct: 74 RDVSLLAEVSRAADVHIVAATGLWFDPPLS--MRLRSVEELTQFFLREIQYGIEDTGIRA 131
Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 207
+ A+ K + L A + V
Sbjct: 132 GIIKVATTGKA----TPFQELVLKAAARASLATGVPVTT--------------------H 167
Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 267
A+ R+ A ++G + SD + L L G I ++ PH
Sbjct: 168 TAASQRDGEQQAAIFESEGL--SPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSA 225
Query: 268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 327
+ + R K + + M ++S+D
Sbjct: 226 IGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQ--ILVSNDWLFGFSSYV--TNIMD 281
Query: 328 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGA 377
+ + F+ + R+ GV E LA PA+ + +
Sbjct: 282 VMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLRAS 331
>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 86.0 bits (211), Expect = 2e-19
Identities = 37/338 (10%), Positives = 78/338 (23%), Gaps = 57/338 (16%)
Query: 42 GLIDVHAHLDDPGRTE---WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
G ID H HL G G+T+++ + +D + E+L K
Sbjct: 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTR 59
Query: 99 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
A + G + +
Sbjct: 60 ALNEEGISAWMLTGAYHVPSRTITG----------------SVEKDVAIIDRVIGVKCAI 103
Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
A L + E + + + A++ + +
Sbjct: 104 SDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSK----------KALQPIYDL 153
Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
++ + + + + V L F+ + D
Sbjct: 154 LENC-------DVPISKLLPT---------------HVNRNVPLFEQALEFARKGGTI-D 190
Query: 279 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 338
P+ A + +A + LSSD + + P G++ +
Sbjct: 191 ITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFD----DEGNLTHIGVAGFE 246
Query: 339 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 376
+L + Y ++ + A KG
Sbjct: 247 TLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKG 284
>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase
{Aquifex aeolicus [TaxId: 63363]}
Length = 112
Score = 52.3 bits (125), Expect = 3e-09
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 335 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 394
+L+ + G+ +++ G + + +G+ AD+ +++P E
Sbjct: 16 QNLEGEFDILVENGKI--KKIDKNILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKE 73
Query: 395 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
+ L+ + K + G+ L GKV+ TI G +VYK+
Sbjct: 74 WILNEET-NLSKS-RNTPLWGKVLKGKVIYTIKDGKMVYKD 112
>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related
protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 46.0 bits (109), Expect = 8e-07
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
IA+G+ AD+V+W+P+ + + + G G L IS+G +V++
Sbjct: 50 MVIIAVGSDADVVIWDPDKMKTITAKSH-KSTVEY-NIFEGMECHGSPLVVISQGKIVFE 107
Query: 435 EGN 437
+GN
Sbjct: 108 DGN 110
>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease
{Klebsiella aerogenes [TaxId: 28451]}
Length = 181
Score = 45.2 bits (107), Expect = 3e-06
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 6 VEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW 58
+ +K+G I +I + +V+ ++ G I+V D
Sbjct: 85 IGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLV-VWSP 143
Query: 59 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTE 91
F GG+ + M + + S + +
Sbjct: 144 AFFGVKPATVIKGGMIAIAPMG-DINASIPTPQ 175
>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia
pickettii [TaxId: 329]}
Length = 127
Score = 43.4 bits (102), Expect = 5e-06
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
IA+G+ AD+V+W+PEAE ++ S+Y G ++ G + RG ++ E
Sbjct: 50 FPIAVGSDADIVLWDPEAEMVIEQTA--MHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDE 107
Query: 436 GN 437
G+
Sbjct: 108 GS 109
>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter
aurescens [TaxId: 43663]}
Length = 126
Score = 43.5 bits (102), Expect = 6e-06
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
+ + R G+ + +G+ ADL++ + + + ++D + S + G
Sbjct: 34 ADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDLDIDTKVDASQFRSLHK--YSPFDG 91
Query: 416 RRLSGKVLATISRGNLVYKEGN 437
++G + T+ RG +V ++G
Sbjct: 92 MPVTGAPVLTMVRGTVVAEKGE 113
>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936
{Thermotoga maritima [TaxId: 2336]}
Length = 123
Score = 42.6 bits (100), Expect = 1e-05
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 353 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
T++++ + L+G++ I G +ADLVV + + + +
Sbjct: 26 GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNH------- 78
Query: 413 YLGRRLSGKVLATISRGNLVYKEGNH 438
L SG+V AT+ G +Y +G +
Sbjct: 79 -LVHAFSGEVFATMVAGKWIYFDGEY 103
>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 41.9 bits (98), Expect = 1e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD---DPGRTEWE 59
V + G II++ S VVD ++ P ++ + P +
Sbjct: 25 ICDVLVANGKIIAVASNIPSDIVPNC-TVVDLSGQILCPEILPGNDADLLVMTPELRIEQ 83
Query: 60 GFPSGT------KAAAAGGITT 75
+ G KA G T
Sbjct: 84 VYARGKLMVKDGKACVKGTFET 105
>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Thermotoga maritima
[TaxId: 2336]}
Length = 288
Score = 43.7 bits (101), Expect = 2e-05
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
G +D H H T F + + G+TT + S E L+ D
Sbjct: 1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLAT-TVSTSLEKMKEILRKARDYIL 59
Query: 102 K 102
+
Sbjct: 60 E 60
>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837
{Enterococcus faecalis [TaxId: 1351]}
Length = 267
Score = 43.0 bits (99), Expect = 4e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
G ID H H + ++ + G+TT+ID T E + D A+
Sbjct: 1 GWIDDHVHCFEKMALYYDYPD---EIGVKKGVTTVIDAG------TTGAENIHEFYDLAQ 51
Query: 102 KRIYVDVGFWGGLVP 116
+ G
Sbjct: 52 QAKTNVFGLVNISKW 66
>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp.
[TaxId: 275]}
Length = 123
Score = 40.3 bits (94), Expect = 6e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 384 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
ADLVV++P+ + + + + G + G+ RG + ++G
Sbjct: 54 ADLVVYDPQYRGTISVKT--QHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQ 105
>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine
amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId:
44689]}
Length = 150
Score = 40.4 bits (94), Expect = 8e-05
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 374 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433
I +G D+V+W+P + D H + + G +++G + TI GN+V+
Sbjct: 50 KLLLIDVGCDGDIVIWDPNQSKTISKDT--HHHAVDFNIFEGIKVTGIAVTTIVAGNIVW 107
Query: 434 KEGN 437
+
Sbjct: 108 SDNK 111
>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 128
Score = 38.9 bits (90), Expect = 2e-04
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
I +G+ ADLV+++P E + + +A+ G +++G+ ++ + RG V +
Sbjct: 50 VFPIVVGSDADLVIFDPNIERVISAETHHMAVD--YNAFEGMKVTGEPVSVLCRGEFVVR 107
Query: 435 EGN 437
+
Sbjct: 108 DKQ 110
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase
{Alcaligenes faecalis [TaxId: 511]}
Length = 61
Score = 36.3 bits (84), Expect = 4e-04
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 378 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
+ G +ADLVV++P S + + + + G V+++ +
Sbjct: 2 VQPGYYADLVVFDPA------------TVADSATFEHPTERAAGIHSVYVNGAAVWEDQS 49
Query: 438 HAPAACGSPI 447
G +
Sbjct: 50 FTGQHAGRVL 59
>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp.
AR9 [TaxId: 301298]}
Length = 127
Score = 38.0 bits (88), Expect = 4e-04
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 436
IA+G+ AD+V+++P + L + + + G + G+V++ +SRG+ V ++
Sbjct: 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVD--YNPFEGMEVYGEVVSVLSRGSFVVRDK 108
Query: 437 N 437
Sbjct: 109 Q 109
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 38.2 bits (89), Expect = 0.002
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------L 93
G ID H H +P + + A A GITTL P+ S T +
Sbjct: 1 GGIDTHVHFINPDQVD---------VALANGITTLFGGGTG--PAEGSKATTVTPGPWNI 49
Query: 94 KLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 152
+ + + E + ++VG G G + + + + ++AG GLK I++
Sbjct: 50 EKMLKSTE-GLPINVGILGKG----HGSSIAPIMEQIDAGAAGLK-------IHEDWGAT 97
Query: 153 ASHIKEGLSVLARYKRPLLVHAE 175
+ I L+V + +H++
Sbjct: 98 PASIDRSLTVADEADVQVAIHSD 120
>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein
BL1453 {Bifidobacterium longum [TaxId: 216816]}
Length = 118
Score = 36.0 bits (82), Expect = 0.002
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 2/46 (4%)
Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGI 73
+D ++M + L + AAG
Sbjct: 52 HYLDGTGKIVMLEVGKSADLLVLNANPLDDLRALEHPALVIAAGHP 97
>d1yrra1 b.92.1.5 (A:1-53,A:351-382)
N-acetylglucosamine-6-phosphate deacetylase, NagA
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 34.3 bits (78), Expect = 0.004
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 1 MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 59
+ AV I +G I S+ + P + A++ P L +++
Sbjct: 16 LDDHAVVIADGLIKSVCPVAELPPEI---EQRSLNGAILSPTLAAGKVANLTAFTPDFK 71
>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate
deacetylase, NagA, catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 297
Score = 36.0 bits (81), Expect = 0.008
Identities = 30/215 (13%), Positives = 52/215 (24%), Gaps = 12/215 (5%)
Query: 42 GLIDVHAHL-------DDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 94
G IDV + D E KA G T + + T S E +K
Sbjct: 1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLI-----TTSDELMK 55
Query: 95 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 154
V + + GL E + + N + + +
Sbjct: 56 QGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVITK 115
Query: 155 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 214
V A L + + L++ R+ T+ + RE
Sbjct: 116 VTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGRE 175
Query: 215 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 249
G +H+ A+ +
Sbjct: 176 PGLAGAILDEADIYCGIIADGLHVDYANIRNAKRL 210
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 35.4 bits (82), Expect = 0.011
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 32/141 (22%)
Query: 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------LKL 95
ID H H P + A A G+TT+I + P+ + T LK
Sbjct: 2 IDTHIHFISPQQIP---------TAFASGVTTMIGG--GTGPADGTNATTITPGRRNLKW 50
Query: 96 KVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 154
+ AAE+ +++GF G NA N ++L + AG +G K T S
Sbjct: 51 MLRAAEE-YSMNLGFLAKG----NASNDASLADQIEAGAIGFKIHEDWG-------TTPS 98
Query: 155 HIKEGLSVLARYKRPLLVHAE 175
I L V +Y + +H +
Sbjct: 99 AINHALDVADKYDVQVAIHTD 119
>d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine
amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri)
[TaxId: 4934]}
Length = 156
Score = 32.7 bits (74), Expect = 0.038
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 370 AGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPV------HMKHPSISAYLGRRLSGKVL 423
G + + ADLV+W P+ + N P + + + G +
Sbjct: 49 EGAFITPILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPR 108
Query: 424 ATISRGNLVYKEGN 437
TI +G +VYKEG
Sbjct: 109 YTIVKGKIVYKEGE 122
>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus
subtilis [TaxId: 1423]}
Length = 300
Score = 33.0 bits (73), Expect = 0.059
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 41 PGLIDVHAHLDDPGRTEWE------GFPSGTKAAAAGGITTLIDMPLNSDPSTI 88
PGL+D H HL G E E G A GGI + + + +
Sbjct: 1 PGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEEL 54
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 301
Score = 32.6 bits (72), Expect = 0.072
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 41 PGLIDVHAHLDDPGRTEWE------GFPSGTKAAAAGGITTLIDMPLNSDPSTI 88
P LID H HL G E G A A GGI + + +
Sbjct: 1 PALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVL 54
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 32.0 bits (73), Expect = 0.15
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------LKL 95
ID H H P + E A G+TT++ P+ + T +
Sbjct: 2 IDTHIHWICPQQAE---------EALVSGVTTMVGGGTG--PAAGTHATTCTPGPWYISR 50
Query: 96 KVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 137
+ AA+ + V++G G G N AL + AGV+GLK
Sbjct: 51 MLQAAD-SLPVNIGLLGKG----NVSQPDALREQVAAGVIGLK 88
>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate
amidohydrolase GOS_1928421 {Environmental samples}
Length = 301
Score = 31.0 bits (68), Expect = 0.25
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 41 PGLIDVHAHLDDPGRTEWE------GFPSGTKAAAAGGITTLIDMPLNSDPSTI 88
PGLID H HL G E G P A GGI + + + +
Sbjct: 1 PGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIISTVRATRAASEDQL 54
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 28.1 bits (63), Expect = 0.58
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 287 IRDAANKEKLWEALMD------GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 337
I D + + + I ++S + D G +K +GG + +
Sbjct: 44 ITDEMFRTEDGRRSLSIAQTVGTRIHIVSVSN----------DPGQIVKKFGGFAGI 90
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase
D, MltD {Escherichia coli [TaxId: 562]}
Length = 48
Score = 26.9 bits (60), Expect = 0.69
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 345 WSYGRKYGVTLEQLASW 361
S +++GV ++ + W
Sbjct: 14 SSIAKRHGVNIKDVMRW 30
>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179
{Unidentified organism [TaxId: 32644]}
Length = 311
Score = 29.7 bits (64), Expect = 0.74
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 42 GLIDVHAHL----DDPGRTEWEGFPSGTKAAA-------AGGITTLIDM 79
GLID+H H+ + R T A G TT+ D
Sbjct: 1 GLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDA 49
>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine
carboxypeptidase {Unidentified organism [TaxId: 32644]}
Length = 303
Score = 29.2 bits (63), Expect = 0.89
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 42 GLIDVHAHLDDPG--------RTEWEGFPSGTKAAA---AGGITTLIDMP 80
GL+D H H+ + G G A G TT+ ++
Sbjct: 1 GLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVG 50
>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas
macleodii [TaxId: 28108]}
Length = 310
Score = 29.3 bits (63), Expect = 0.96
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 42 GLIDVHAHLDDPGRTEWEG------------FPSGTKAAAAGGITTLIDMP 80
GL+D+H H +++ + G TT+ +
Sbjct: 1 GLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVG 51
>d2vhla1 b.92.1.5 (A:3-57,A:359-394)
N-acetylglucosamine-6-phosphate deacetylase, NagA
{Bacillus subtilis [TaxId: 1423]}
Length = 91
Score = 27.2 bits (60), Expect = 1.2
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 59
IS VS E P+ + ++ ++V++P + ++ E
Sbjct: 25 NDGKISTVSTER-PKEPYSKEIQAPADSVLLPSVTVGKDADLVIVSSDCE 73
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 28.4 bits (63), Expect = 1.7
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 12/105 (11%)
Query: 104 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL 163
I + + + A + S + + V +P N +I G V
Sbjct: 48 IGLILDIGNDQLANIAASTSNAASWVQNNVR-----------PYYPAVNIKYIAAGNEVQ 96
Query: 164 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTR-SYSTYLKTRPPSW 207
+ +L + L + T + + PPS
Sbjct: 97 GGATQSILPAMRNLNAALSAAGLGAIKVSTSIRFDEVANSFPPSA 141
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 28.0 bits (61), Expect = 2.0
Identities = 2/11 (18%), Positives = 5/11 (45%)
Query: 43 LIDVHAHLDDP 53
+ D+ +L
Sbjct: 1 MFDIGVNLTSS 11
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 27.3 bits (59), Expect = 4.0
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 39 IMPGLIDVHAHLDDP 53
++ ID H H D P
Sbjct: 1 MICRFIDTHCHFDFP 15
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 26.8 bits (58), Expect = 5.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 43 LIDVHAHLDDP 53
++D HAHL
Sbjct: 5 MVDTHAHLHFH 15
>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable
4-imidazolone-5-propanoate amidohydrolase GOS_1928421
{Environmental samples}
Length = 103
Score = 25.5 bits (56), Expect = 5.5
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 372 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 405
+ + +G AD +VW + HP +
Sbjct: 57 KGKLVTLRVGMLADFLVW--------NCGHPAEL 82
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 26.4 bits (57), Expect = 7.1
Identities = 38/349 (10%), Positives = 78/349 (22%), Gaps = 86/349 (24%)
Query: 42 GLIDVHAHL----------DDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTE 91
G H HL D ++ G+ +I+M + + +
Sbjct: 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEM--TNRYMGRNAQ 63
Query: 92 TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMT 151
+ + + G++ + + + + +
Sbjct: 64 FMLDVMRETGINVVACTGYY----QDAFFPE----------------HVATRSVQELAQE 103
Query: 152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211
I++G+ L E G+ + EE
Sbjct: 104 MVDEIEQGID-----GTELKAGIIAEIGTSEG-------------------KITPLEEKV 139
Query: 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 271
T G + L + D V L +
Sbjct: 140 FIAAALAHNQT-------GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNL 192
Query: 272 EEIP-----------DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320
+ I D + P + A L + + + MLS D LK
Sbjct: 193 DNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRV-MLSMD-ITRRSHLK 250
Query: 321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 369
+ ++L R+ G + + E P++
Sbjct: 251 ANGGYGYD----------YLLTTFIPQLRQSGFSQADVDVMLRENPSQF 289
>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453
{Bifidobacterium longum [TaxId: 216816]}
Length = 324
Score = 26.6 bits (56), Expect = 7.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 41 PGLIDVHAHL 50
PGLI+ H HL
Sbjct: 1 PGLINAHTHL 10
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,709,198
Number of extensions: 80488
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 60
Length of query: 450
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,199,356
Effective search space: 434166872
Effective search space used: 434166872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)