Query 013051
Match_columns 450
No_of_seqs 122 out of 168
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr6_A Presenilin-1; protease, 100.0 1.6E-42 5.4E-47 317.0 9.5 91 360-450 83-176 (176)
2 4hyg_A Putative uncharacterize 98.7 5E-08 1.7E-12 96.2 9.9 134 71-216 43-178 (301)
3 1vf5_F Protein PET M; photosyn 26.4 73 0.0025 21.9 3.6 24 387-410 6-29 (35)
4 2h3o_A MERF; membrane protein, 21.9 90 0.0031 24.0 3.7 37 395-433 16-53 (61)
5 1q90_M Cytochrome B6F complex 21.3 1E+02 0.0035 21.7 3.6 25 387-411 7-31 (39)
6 2knc_A Integrin alpha-IIB; tra 20.1 94 0.0032 23.2 3.5 17 83-99 24-40 (54)
7 3aqp_A Probable secdf protein- 18.9 4.6E+02 0.016 28.5 10.2 29 386-414 590-618 (741)
8 2l8s_A Integrin alpha-1; trans 18.6 1.1E+02 0.0037 23.0 3.5 17 83-99 21-37 (54)
9 3aqp_A Probable secdf protein- 18.2 3.9E+02 0.013 29.1 9.4 67 66-141 560-628 (741)
10 2k1a_A Integrin alpha-IIB; sin 16.5 1.4E+02 0.0047 21.2 3.5 16 84-99 23-38 (42)
No 1
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=316.95 Aligned_cols=91 Identities=52% Similarity=0.922 Sum_probs=87.6
Q ss_pred ccCCceeeccchhhHHHHHhhhhh--hc-ChhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHhhhhH
Q 013051 360 ITDRGIRLGLGDFIFYSVLVGRAA--MY-DLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLM 436 (450)
Q Consensus 360 ~~~~gIKLGLGDFIFYSVLVGrAA--~~-d~~t~~aCfvAIL~GL~~TLlLLav~~kALPALPISI~lGliFYF~T~~~v 436 (450)
++++|||||||||||||||||||| +| ||+|+++||+|||+|||+||++|++||||||||||||+||++|||+|++++
T Consensus 83 ~~~~gikLGLGDFIFYSvLVgkAa~~~~~d~~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPiSI~lG~~fyf~t~~~v 162 (176)
T 2kr6_A 83 PEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPALPISITFGLVFYFATDYLV 162 (176)
T ss_dssp CCSSCCSSCTTTHHHHHHHHHHHHHHSCCTTTTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSSSCCCCHHHHHHHHTTTT
T ss_pred cccccccccccCeeehHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999 74 999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhhcccC
Q 013051 437 EPFVVGTTTNLLMF 450 (450)
Q Consensus 437 ~PF~~~~s~~l~~f 450 (450)
+||+++++.|.+++
T Consensus 163 ~pf~~~l~~~~~~~ 176 (176)
T 2kr6_A 163 QPFMDQLAFHQFYI 176 (176)
T ss_dssp CCGGGTSSCSCCCC
T ss_pred HHHHHHHHhceeeC
Confidence 99999999998763
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=98.69 E-value=5e-08 Score=96.25 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCcchh-hHHHHhhhhhhhee
Q 013051 71 AVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAF-TCFVLLFNFTIVGV 149 (450)
Q Consensus 71 sl~Nali~v~vI~vmTf~lVlLYkyrc~k~i~gwL~~Ss~~lL~~~g~~~~~~vl~~~nip~D~i-T~~~~l~NfgvvG~ 149 (450)
+..|++..++.|.++|.+|+++.||++.|+|++-+.+++++..+..-+.++.. +....... .++++. -.++..
T Consensus 43 ~~sNs~~YI~~ILvfT~~mL~l~k~~~~~ii~~ii~~~i~~~~~YVf~~l~~~----~~~~~~~~~~~a~~~-a~~~~~- 116 (301)
T 4hyg_A 43 SVANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLL----ALGPTTAAAAGTLIG-AVAVTA- 116 (301)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHH----TTCSCHHHHHHHHHH-HHHHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccchhhHHHHHHH-HHHHHH-
Confidence 35799999999999999999999999999999999999998776665544433 22221100 011111 111111
Q ss_pred eeeeecCcchhhHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhh
Q 013051 150 LSLFSGGIPILLRQAYMVCMGIIMAAWFTN-LPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASS 216 (450)
Q Consensus 150 i~If~~k~Pl~lqQ~YLI~iSalmA~~f~~-LPeWTtW~lL~~iaiyDL~AVL~P~GPLr~LVE~Aqe 216 (450)
..+.+-.-++....=+++|+=.|-.|.- |--|++=++|+.+++||.++|--- |-.+.+|+.
T Consensus 117 --ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~paiiLL~~LavYDaISVy~T----kHMvtLAeg 178 (301)
T 4hyg_A 117 --LLYLYPEWYVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRT----KHMITLAEG 178 (301)
T ss_dssp --HHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTT
T ss_pred --HHHhcccHHHhhHHHHHHHhhHHHHHhhccchHHHHHHHHHHHHHHhhhccCc----hHHHHHHHh
Confidence 2222234577888888888877777755 999999999999999999999421 344555543
No 3
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=26.35 E-value=73 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 013051 387 LMTVYACYLAIISGLGCTLILLSV 410 (450)
Q Consensus 387 ~~t~~aCfvAIL~GL~~TLlLLav 410 (450)
+++...||.-+|+||.+-.+||=+
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 456788999999999999988855
No 4
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=21.85 E-value=90 Score=23.98 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhc-ccCCCCchHHHHHHHHHHHhh
Q 013051 395 LAIISGLGCTLILLSVCR-RALPALPISITLGVLFYFLTR 433 (450)
Q Consensus 395 vAIL~GL~~TLlLLav~~-kALPALPISI~lGliFYF~T~ 433 (450)
++|+.|...-=-.++-.+ --+||||+.| |+.+|-.-|
T Consensus 16 Lvil~G~~Glsa~~~wLd~vl~P~l~~fi--gl~~Y~~~r 53 (61)
T 2h3o_A 16 LVILLGVVGLSALTGYLDYVLLPALAIFI--GLTIYAIQR 53 (61)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCCTTHHHHH--HHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 355555544333333333 4679999988 888886655
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=21.31 E-value=1e+02 Score=21.68 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 013051 387 LMTVYACYLAIISGLGCTLILLSVC 411 (450)
Q Consensus 387 ~~t~~aCfvAIL~GL~~TLlLLav~ 411 (450)
+++...||.-+|+||.+-.+||=+-
T Consensus 7 f~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 7 AGTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567889999999999999988653
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.07 E-value=94 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhchHh
Q 013051 83 AIVTFLLVLLYYYNFTN 99 (450)
Q Consensus 83 ~vmTf~lVlLYkyrc~k 99 (450)
.+...+..+|||+.|.|
T Consensus 24 llL~li~~~LwK~GFFk 40 (54)
T 2knc_A 24 LLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCccc
Confidence 34445556788887765
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=18.95 E-value=4.6e+02 Score=28.54 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013051 386 DLMTVYACYLAIISGLGCTLILLSVCRRA 414 (450)
Q Consensus 386 d~~t~~aCfvAIL~GL~~TLlLLav~~kA 414 (450)
+|-..+...++++.++.+++..++++...
T Consensus 590 s~~~~l~~l~~l~~~~~~~~g~l~l~g~~ 618 (741)
T 3aqp_A 590 DWTFGVASILAVAHDVAIVAGMYSLLGLE 618 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56566666777777777777777777643
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=18.58 E-value=1.1e+02 Score=23.00 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhchHh
Q 013051 83 AIVTFLLVLLYYYNFTN 99 (450)
Q Consensus 83 ~vmTf~lVlLYkyrc~k 99 (450)
.+...+..+|||+.|.|
T Consensus 21 LLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCccc
Confidence 34445556789887765
No 9
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=18.20 E-value=3.9e+02 Score=29.08 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHHHHH--HHHhHHHHHHHHHHHcCCCcchhhHHHHh
Q 013051 66 QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFV--LGTMGGSIFLSIIQQFSIPVDAFTCFVLL 141 (450)
Q Consensus 66 ~k~~~sl~Nali~v~vI~vmTf~lVlLYkyrc~k~i~gwL~~Ss~~l--L~~~g~~~~~~vl~~~nip~D~iT~~~~l 141 (450)
....+.+.+.++....+++.-+++++.+.| .+..+.+.+.++.+ ++.+|... -+++++|..++..++
T Consensus 560 ~~~~~~~~~~~~~al~lali~i~l~l~~~F---s~~~~l~~l~~l~~~~~~~~g~l~------l~g~~l~~~~i~~~l 628 (741)
T 3aqp_A 560 PAIGEELRRNAVMAVLVGLGLILLYVAFRF---DWTFGVASILAVAHDVAIVAGMYS------LLGLEFSIPTIAALL 628 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHH------HHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH------HHhcCccHHHHHHHH
Confidence 344444444444433333333334444444 55555555444322 33333322 267899988855544
No 10
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=16.47 E-value=1.4e+02 Score=21.17 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhchHh
Q 013051 84 IVTFLLVLLYYYNFTN 99 (450)
Q Consensus 84 vmTf~lVlLYkyrc~k 99 (450)
+...+...|||+.|.|
T Consensus 23 lL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 23 LLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCccc
Confidence 3445556789988765
Done!