Query 013051
Match_columns 450
No_of_seqs 122 out of 168
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 03:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013051.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013051hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 38.8 13 0.00095 23.2 3.0 15 102-116 14-28 (34)
2 d1q90l_ f.23.24.1 (L:) PetL su 16.7 50 0.0037 20.2 2.7 17 389-405 2-19 (32)
3 d1v54d_ f.23.1.1 (D:) Mitochon 16.0 53 0.0038 27.1 3.6 34 386-422 74-108 (144)
4 d1m56c_ f.25.1.1 (C:) Bacteria 14.9 2.4E+02 0.017 24.4 8.3 55 69-123 131-185 (265)
5 d2r6gf2 f.58.1.1 (F:261-504) M 9.9 2.1E+02 0.015 23.7 6.0 46 63-108 12-64 (244)
6 d1wuea2 d.54.1.1 (A:1001-1126) 9.6 48 0.0035 24.8 1.3 11 189-199 103-113 (126)
7 d2gdqa2 d.54.1.1 (A:4-118) Hyp 8.9 53 0.0039 24.6 1.3 14 189-202 92-105 (115)
8 d1muca2 d.54.1.1 (A:4-130) Muc 8.8 54 0.004 24.3 1.3 10 190-199 105-114 (127)
9 d1tzza2 d.54.1.1 (A:1006-1145) 8.2 59 0.0043 25.4 1.3 9 192-200 116-124 (140)
10 d1r0ma2 d.54.1.1 (A:6-132) N-a 8.0 61 0.0044 24.3 1.3 9 191-199 106-114 (127)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=38.84 E-value=13 Score=23.17 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHh
Q 013051 102 KNYVRFSAFFVLGTM 116 (450)
Q Consensus 102 ~gwL~~Ss~~lL~~~ 116 (450)
+|||.||-.|++.+.
T Consensus 14 kgwlafslamlfvfi 28 (34)
T d1xmeb2 14 KGWLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 799999887765443
No 2
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.74 E-value=50 Score=20.19 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHH-HHHHH
Q 013051 389 TVYACYLAIISG-LGCTL 405 (450)
Q Consensus 389 t~~aCfvAIL~G-L~~TL 405 (450)
-++..||+.|+| |++||
T Consensus 2 lti~syvglligal~~tl 19 (32)
T d1q90l_ 2 LTITSYVGLLIGALVFTL 19 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 467789999988 44454
No 3
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.01 E-value=53 Score=27.12 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCchHH
Q 013051 386 DLMTVYACYLAIISGLGCTLILLSVCRR-ALPALPISI 422 (450)
Q Consensus 386 d~~t~~aCfvAIL~GL~~TLlLLav~~k-ALPALPISI 422 (450)
+|-++++ ++++|+++|+++....|+ +-|.+|-++
T Consensus 74 ewK~v~g---~~~~~i~~s~~i~~~~r~~v~p~~P~T~ 108 (144)
T d1v54d_ 74 EWKTVVG---AAMFFIGFTALLLIWEKHYVYGPIPHTF 108 (144)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHTCCCCCGGG
T ss_pred chhHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 5666654 577888888888777776 668888754
No 4
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.86 E-value=2.4e+02 Score=24.39 Aligned_cols=55 Identities=9% Similarity=-0.124 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 013051 69 EGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLS 123 (450)
Q Consensus 69 ~~sl~Nali~v~vI~vmTf~lVlLYkyrc~k~i~gwL~~Ss~~lL~~~g~~~~~~ 123 (450)
.-.++|.++.+.--..+|...-.+.|-+..|..+-||..+.++-+.+.+.|+.+-
T Consensus 131 ~l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey 185 (265)
T d1m56c_ 131 HLPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEY 185 (265)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998888888888888888888888887777777766543
No 5
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.89 E-value=2.1e+02 Score=23.75 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhchHhHHHHHHHHH
Q 013051 63 SSTQKLEGAVLNALVFVILIAIVTFLLVLL-------YYYNFTNFLKNYVRFS 108 (450)
Q Consensus 63 s~g~k~~~sl~Nali~v~vI~vmTf~lVlL-------Ykyrc~k~i~gwL~~S 108 (450)
..+..+++++.|++++..+.++.+..+-++ +|+|-.|+++..+++-
T Consensus 12 ~~~~~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p 64 (244)
T d2r6gf2 12 GIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILP 64 (244)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 345668889988887766655555544322 2455555666555443
No 6
>d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}
Probab=9.63 E-value=48 Score=24.77 Aligned_cols=11 Identities=45% Similarity=0.818 Sum_probs=8.3
Q ss_pred HHHHHHHHHHh
Q 013051 189 LLALALYDLFA 199 (450)
Q Consensus 189 L~~iaiyDL~A 199 (450)
-+=+|+||+.|
T Consensus 103 aid~AlwDl~a 113 (126)
T d1wuea2 103 ALETAIWDLYA 113 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34579999976
No 7
>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Probab=8.94 E-value=53 Score=24.61 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhcC
Q 013051 189 LLALALYDLFAVLA 202 (450)
Q Consensus 189 L~~iaiyDL~AVL~ 202 (450)
-+=+|+|||.|=..
T Consensus 92 aid~AlwDl~~K~~ 105 (115)
T d2gdqa2 92 AVSMALTEIAAKAA 105 (115)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 35589999987543
No 8
>d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]}
Probab=8.76 E-value=54 Score=24.33 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q 013051 190 LALALYDLFA 199 (450)
Q Consensus 190 ~~iaiyDL~A 199 (450)
+=+|+||+.|
T Consensus 105 id~AlwDl~~ 114 (127)
T d1muca2 105 IESALLDAQG 114 (127)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4578999876
No 9
>d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=8.19 E-value=59 Score=25.36 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=7.5
Q ss_pred HHHHHHHhh
Q 013051 192 LALYDLFAV 200 (450)
Q Consensus 192 iaiyDL~AV 200 (450)
+|+|||.|=
T Consensus 116 iAlWDl~gK 124 (140)
T d1tzza2 116 MAVWDAVAK 124 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999873
No 10
>d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.02 E-value=61 Score=24.28 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.3
Q ss_pred HHHHHHHHh
Q 013051 191 ALALYDLFA 199 (450)
Q Consensus 191 ~iaiyDL~A 199 (450)
=+|+||++|
T Consensus 106 d~AlwDl~a 114 (127)
T d1r0ma2 106 EMAAWDLWA 114 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 388999986
Done!