Query 013052
Match_columns 450
No_of_seqs 241 out of 878
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 23:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2E-115 4E-120 902.7 38.4 417 26-450 1-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 3.8E-64 8.2E-69 525.9 20.4 347 84-448 81-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 1.6E-52 3.5E-57 405.7 17.4 238 106-366 1-244 (244)
4 TIGR03469 HonB hopene-associat 90.7 17 0.00037 37.8 17.6 115 101-223 37-155 (384)
5 TIGR03472 HpnI hopanoid biosyn 86.6 25 0.00054 36.4 15.4 106 103-225 40-150 (373)
6 cd02525 Succinoglycan_BP_ExoA 83.8 18 0.00038 33.8 11.8 100 105-224 1-104 (249)
7 PRK11204 N-glycosyltransferase 82.3 31 0.00067 35.9 14.0 101 101-221 51-154 (420)
8 cd06439 CESA_like_1 CESA_like_ 80.6 33 0.00071 32.4 12.5 105 100-226 25-134 (251)
9 PRK14716 bacteriophage N4 adso 80.0 23 0.0005 38.7 12.4 102 102-214 64-173 (504)
10 PTZ00260 dolichyl-phosphate be 79.6 45 0.00098 34.2 13.8 112 100-224 66-188 (333)
11 TIGR03111 glyc2_xrt_Gpos1 puta 78.7 75 0.0016 33.7 15.6 106 102-224 47-157 (439)
12 cd06421 CESA_CelA_like CESA_Ce 74.9 35 0.00076 31.6 10.7 103 104-225 1-108 (234)
13 PF13641 Glyco_tranf_2_3: Glyc 72.6 11 0.00023 35.1 6.6 113 104-234 1-120 (228)
14 cd06437 CESA_CaSu_A2 Cellulose 70.2 27 0.00059 32.7 8.8 103 104-221 1-107 (232)
15 PRK10063 putative glycosyl tra 68.0 98 0.0021 30.1 12.4 101 104-223 1-106 (248)
16 cd02511 Beta4Glucosyltransfera 67.6 61 0.0013 30.7 10.7 97 105-225 1-98 (229)
17 cd04187 DPM1_like_bac Bacteria 66.9 67 0.0014 28.6 10.3 96 109-224 2-103 (181)
18 COG1216 Predicted glycosyltran 66.8 40 0.00088 33.7 9.7 90 104-210 3-94 (305)
19 PRK14583 hmsR N-glycosyltransf 66.4 50 0.0011 35.0 10.7 99 102-220 73-174 (444)
20 PRK07132 DNA polymerase III su 65.7 43 0.00093 34.1 9.6 94 103-208 16-128 (299)
21 cd06434 GT2_HAS Hyaluronan syn 65.3 86 0.0019 29.0 11.1 92 106-215 2-93 (235)
22 PF08660 Alg14: Oligosaccharid 64.9 55 0.0012 30.5 9.4 125 109-237 3-131 (170)
23 cd04184 GT2_RfbC_Mx_like Myxoc 64.6 81 0.0017 28.4 10.5 93 104-213 1-97 (202)
24 PF00535 Glycos_transf_2: Glyc 64.2 41 0.00088 28.6 8.1 100 109-226 3-106 (169)
25 PF07521 RMMBL: RNA-metabolisi 63.2 4.2 9E-05 29.2 1.3 29 110-140 14-42 (43)
26 cd02520 Glucosylceramide_synth 60.2 1.4E+02 0.003 27.3 11.3 104 104-224 1-109 (196)
27 TIGR01556 rhamnosyltran L-rham 59.9 85 0.0018 30.5 10.4 85 113-213 3-87 (281)
28 cd04179 DPM_DPG-synthase_like 57.0 95 0.0021 27.4 9.4 107 109-234 2-113 (185)
29 PRK11234 nfrB bacteriophage N4 55.6 72 0.0016 36.6 10.1 102 101-213 60-169 (727)
30 PRK10073 putative glycosyl tra 53.7 1.2E+02 0.0025 31.0 10.4 93 103-213 5-99 (328)
31 PLN02726 dolichyl-phosphate be 51.3 2.2E+02 0.0048 27.0 11.8 106 102-224 7-116 (243)
32 cd02526 GT2_RfbF_like RfbF is 51.0 1.6E+02 0.0035 27.2 10.3 96 109-223 2-97 (237)
33 cd06427 CESA_like_2 CESA_like_ 46.5 1.8E+02 0.004 27.4 10.1 94 104-213 1-98 (241)
34 PRK07276 DNA polymerase III su 44.6 1.3E+02 0.0027 30.7 8.8 26 103-128 22-47 (290)
35 TIGR03030 CelA cellulose synth 40.7 6E+02 0.013 29.0 14.5 115 102-233 129-262 (713)
36 cd02510 pp-GalNAc-T pp-GalNAc- 40.5 2E+02 0.0042 28.4 9.5 100 108-224 2-106 (299)
37 PRK05917 DNA polymerase III su 40.4 1.3E+02 0.0029 30.5 8.3 34 176-209 101-134 (290)
38 PF07747 MTH865: MTH865-like f 40.3 15 0.00033 29.9 1.2 18 206-223 11-28 (75)
39 PRK05818 DNA polymerase III su 37.9 1.8E+02 0.004 29.2 8.6 34 175-208 93-126 (261)
40 PRK15489 nfrB bacteriophage N4 37.8 2.1E+02 0.0046 32.8 10.1 106 102-221 69-185 (703)
41 cd06913 beta3GnTL1_like Beta 1 37.3 2.6E+02 0.0056 25.8 9.3 105 109-224 2-110 (219)
42 cd04185 GT_2_like_b Subfamily 37.1 3.1E+02 0.0068 24.6 10.4 89 109-213 2-93 (202)
43 PF12273 RCR: Chitin synthesis 37.0 27 0.00058 30.9 2.4 18 34-51 1-18 (130)
44 PRK10714 undecaprenyl phosphat 36.5 4.7E+02 0.01 26.5 11.9 108 101-226 3-115 (325)
45 cd06420 GT2_Chondriotin_Pol_N 35.8 3E+02 0.0065 24.1 10.9 98 109-224 2-102 (182)
46 PRK05454 glucosyltransferase M 33.6 4.1E+02 0.0088 30.4 11.6 124 99-234 119-255 (691)
47 cd04196 GT_2_like_d Subfamily 33.5 3.5E+02 0.0077 24.2 10.5 98 108-224 2-102 (214)
48 PRK07414 cob(I)yrinic acid a,c 31.5 4.5E+02 0.0099 24.8 10.7 106 117-233 36-152 (178)
49 cd00761 Glyco_tranf_GTA_type G 30.9 2.9E+02 0.0063 22.4 9.5 89 109-214 2-92 (156)
50 PF11051 Mannosyl_trans3: Mann 30.7 1.9E+02 0.004 28.8 7.5 94 108-219 4-110 (271)
51 cd04192 GT_2_like_e Subfamily 30.0 4.2E+02 0.0091 24.0 10.9 99 109-224 2-105 (229)
52 cd02537 GT8_Glycogenin Glycoge 29.5 3.7E+02 0.008 25.9 9.2 108 106-221 1-111 (240)
53 cd04186 GT_2_like_c Subfamily 29.3 3.5E+02 0.0076 22.9 11.2 92 109-223 2-96 (166)
54 COG4746 Uncharacterized protei 29.2 32 0.00069 28.1 1.4 19 206-224 16-34 (80)
55 PRK07993 DNA polymerase III su 28.8 3.1E+02 0.0066 28.3 8.9 98 103-209 22-147 (334)
56 PRK06581 DNA polymerase III su 28.7 4.6E+02 0.0099 26.5 9.6 34 176-209 95-128 (263)
57 PF02572 CobA_CobO_BtuR: ATP:c 28.6 3.5E+02 0.0076 25.4 8.5 106 118-233 19-133 (172)
58 cd06423 CESA_like CESA_like is 28.6 3.5E+02 0.0075 22.6 9.3 95 109-222 2-99 (180)
59 PRK08058 DNA polymerase III su 28.4 4.2E+02 0.0091 27.0 9.8 26 103-128 26-53 (329)
60 TIGR02803 ExbD_1 TonB system t 28.2 3.9E+02 0.0084 23.0 10.7 50 116-169 68-119 (122)
61 cd06442 DPM1_like DPM1_like re 28.0 4.3E+02 0.0093 24.0 9.1 97 109-224 2-101 (224)
62 TIGR00824 EIIA-man PTS system, 27.7 3.7E+02 0.008 23.1 8.0 94 106-214 2-97 (116)
63 cd00006 PTS_IIA_man PTS_IIA, P 26.7 3.4E+02 0.0074 23.3 7.6 93 107-214 2-96 (122)
64 KOG3339 Predicted glycosyltran 24.7 5.6E+02 0.012 24.8 8.9 113 106-224 40-158 (211)
65 cd04188 DPG_synthase DPG_synth 24.0 3.9E+02 0.0084 24.4 8.0 97 109-224 2-105 (211)
66 PRK05986 cob(I)alamin adenolsy 23.0 6.7E+02 0.015 23.9 11.4 105 118-233 38-152 (191)
67 cd04195 GT2_AmsE_like GT2_AmsE 22.2 5.6E+02 0.012 22.8 9.6 90 108-214 2-95 (201)
68 PRK05707 DNA polymerase III su 21.0 6.8E+02 0.015 25.7 9.7 99 103-209 20-145 (328)
69 cd06435 CESA_NdvC_like NdvC_li 20.9 6.6E+02 0.014 23.1 11.2 104 108-226 2-109 (236)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.6e-115 Score=902.70 Aligned_cols=417 Identities=56% Similarity=1.029 Sum_probs=377.5
Q ss_pred CCCccCCccchHHHHHHHHHHHHHHHHHhh-cCcCCCCCC-CCCCccccccccCCCCCCcccccccccccccCCCCCCCC
Q 013052 26 SGRMFSDRKWMVPFFASLLVSIMLLLSATF-GLFTSSFSG-DPLPFDIISFAKSDDSSGYFVESDINKSFVTNGTARTEP 103 (450)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 103 (450)
||..++++||++|++++++++++|+++++. +..++++.. ..+.+.+. ...+++.+.|+|+++.+.+.. .+..+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (421)
T PLN03183 1 MGSVNVEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPL--SRTNQTRLEFAESKVNQSPHP-PPVQDKL 77 (421)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccc--cccccccccccccccCCCCCC-CCCCCCC
Confidence 567789999999999999999888665542 222222211 11211111 123455667999998865421 1234568
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHH
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMI 183 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V 183 (450)
|||||||++|+||.+|++|||++||||+|+||||+|+||+..++.+++..++.++++.+++||+|+++++.|+|||+|||
T Consensus 78 ~r~AYLI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V 157 (421)
T PLN03183 78 PRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMV 157 (421)
T ss_pred CeEEEEEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHH
Confidence 99999999998899999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcccCCCCceeeccccCCceeeeeccceeeCCCcccccCcc
Q 013052 184 ACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSD 263 (450)
Q Consensus 184 ~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~~r~~NFIe~~~~~gwk~~~R~~~ii~dpgly~~~k~~ 263 (450)
+|||+||+.|++...+|||||||||+||||+|||||++.|+++|+|+|||+++++.+|++.+|++++++|||+|..++..
T Consensus 158 ~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~ 237 (421)
T PLN03183 158 ANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSD 237 (421)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccch
Confidence 99999999999988999999999999999999999888888889999999999889999999999999999999988888
Q ss_pred chhccccCCCCCcceeeecceeEEecHHHHHHhHhccCCchHHHHhhhccCCCCCCcchhhhcccccccccccccCCeeE
Q 013052 264 IAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHY 343 (450)
Q Consensus 264 ~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~nt~~pDE~yFqTvl~Ns~~f~~t~vn~nLRy 343 (450)
++|.+++|..|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+||||
T Consensus 238 ~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRy 317 (421)
T PLN03183 238 IYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHY 317 (421)
T ss_pred hhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EecCCCCCCCCcccCHHHHHHHhcCCCcEEeccCCChhHHHHHHHHHhcCC-CCCCCCccccCCCCCCCCCCcccCCCCC
Q 013052 344 IAWDNPPKQHPVKLTMKDFDKMVKSNAPFARKFAKDDPVLDKIDKELLGRT-NRFAPGAWCIGSSEGGADPCTLRGNDSM 422 (450)
Q Consensus 344 I~W~~~~~~~P~~l~~~D~~~l~~S~a~FARKF~~dd~vLd~Id~~ll~r~-~~~~~g~w~~~~~~~~~~~c~~~g~~~~ 422 (450)
|+|++++++||++|+.+|+++|++|+++|||||+.|++|+|+||+++++|. ++++|||||.| +||||+|||+++
T Consensus 318 I~W~~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~-----~~~c~~~~~~~~ 392 (421)
T PLN03183 318 ISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG-----KPKCSRVGDPAK 392 (421)
T ss_pred EecCCCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC-----CCcccccCCcCc
Confidence 999999889999999999999999999999999999999999999999999 99999999987 489999999999
Q ss_pred ccCCchHHHHHHHHHHHhh-hhhccCCCC
Q 013052 423 FRPGPGAERLQALLQTLLS-EDFRKKQCS 450 (450)
Q Consensus 423 ~~pg~~~~~l~~~~~~~~~-~~~~~~~c~ 450 (450)
+||||||+||++||++||+ ++||++||+
T Consensus 393 ~~p~~~~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 393 IKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred cCCCcHHHHHHHHHHHHhchhccccccCC
Confidence 9999999999999999999 999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-64 Score=525.89 Aligned_cols=347 Identities=44% Similarity=0.739 Sum_probs=312.6
Q ss_pred ccccccccccccC-CCCCCCCCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccc
Q 013052 84 FVESDINKSFVTN-GTARTEPPRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFE 162 (450)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~p~kiAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~ 162 (450)
+.++.+....... ....+.+++.||++++..+|.++++|+|+|+|||+|.||||||++|+++++..+.. +..|
T Consensus 81 ~~c~~i~~r~~~~~~~s~~~~~~~~a~~~~v~kd~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~c 154 (439)
T KOG0799|consen 81 MSCSSIKSRIYPITPLSKELKPFPAAFLRVVYKDYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASC 154 (439)
T ss_pred cchHHHHhhcccCCcccccccccceEEEEeecccHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhc
Confidence 5555554443211 12345666566666655569999999999999999999999999999999876654 4689
Q ss_pred cCCeEEecccceeeecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcccCCCCceeeccccCCce
Q 013052 163 VENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWK 242 (450)
Q Consensus 163 ~~NV~vv~kr~~V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~~r~~NFIe~~~~~gwk 242 (450)
++||+|+++++.|+|||+|+++|+|+||+.|++...+|||||||||+|||||||+||+++|+.+ +|.|||++++..+|+
T Consensus 155 f~NV~v~~k~~~v~~~G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~ 233 (439)
T KOG0799|consen 155 FPNVIVLPKRESVTYGGHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWK 233 (439)
T ss_pred CCceEEeccccceecCCchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHH
Confidence 9999999999999999999999999999999999889999999999999999999999999988 599999999999999
Q ss_pred eeeeccceeeCCCcccccCccchhccccCCCCCcceeeecceeEEecHHHHHHhHhccCCchHHHHhhhccCCCCCCcch
Q 013052 243 LNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYF 322 (450)
Q Consensus 243 ~~~R~~~ii~dpgly~~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~nt~~pDE~yF 322 (450)
+.++.++.+.+++ |+.+++.++|.. +|.++++|+||.|++|||+||+||++ +++|+++++||+++++|||+||
T Consensus 234 ~~~~~k~~~~~~~-~~~~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~--~~~~~~ll~~~~~t~~~dE~f~ 306 (439)
T KOG0799|consen 234 LNRKAKWDIIDLK-YFRNKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLIS--GNLPRTLLMYYNNTYSPDEGFF 306 (439)
T ss_pred HhcccCCcccccc-hheecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhc--CccHHHHHHHHhCccCcchhhh
Confidence 9989988888888 778888888854 89999999999999999999999998 4999999999999999999999
Q ss_pred hhhcccccccccccccCC--eeEEecCC----CCCCCCcccCHHHHHHHhcCCC-cEEeccC--CChhHHHHHHHHHhcC
Q 013052 323 HTVICNTEEFRNTAISND--LHYIAWDN----PPKQHPVKLTMKDFDKMVKSNA-PFARKFA--KDDPVLDKIDKELLGR 393 (450)
Q Consensus 323 qTvl~Ns~~f~~t~vn~n--LRyI~W~~----~~~~~P~~l~~~D~~~l~~S~a-~FARKF~--~dd~vLd~Id~~ll~r 393 (450)
||++||+ |..+.+++| +||+.|+. ++++||+.++..|...|..++. .|||||. .++++++++|.+++++
T Consensus 307 ~Tl~~n~--~~~~g~~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c 384 (439)
T KOG0799|consen 307 HTLQCNP--FGMPGVFNDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGC 384 (439)
T ss_pred Hhhhccc--cCCCCcccchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhh
Confidence 9999998 888889999 99999998 6788999999999999999999 9999999 5899999999999999
Q ss_pred C-CCCCCCccccCCCCCCCCCCcccCCCCCccCCchHHHHHHHHHHHhh-hhhccCC
Q 013052 394 T-NRFAPGAWCIGSSEGGADPCTLRGNDSMFRPGPGAERLQALLQTLLS-EDFRKKQ 448 (450)
Q Consensus 394 ~-~~~~~g~w~~~~~~~~~~~c~~~g~~~~~~pg~~~~~l~~~~~~~~~-~~~~~~~ 448 (450)
. +..++|+|| ..++.+++|+..++...+.|||++.|++.++..++. ++|+..|
T Consensus 385 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 385 LAEFNRTGGWC--DHSLRTLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred hhhccCccccc--ccccccccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 9 878999999 666778999999999999999999999999999999 8998876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.6e-52 Score=405.67 Aligned_cols=238 Identities=30% Similarity=0.509 Sum_probs=158.8
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 106 LAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 106 iAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
|||||++|+++++++++|++++|+|+|.||||||+|++...++++... ..+++||++++++..|.|||+|+|+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~------~~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKL------ISCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHH------HCT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHh------cccCCceeecccccccccCCccHHHH
Confidence 799999999899999999999999999999999999998888777754 35789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcccCCCCceeeccccCCceeeeeccceeeCCCcccccCccch
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIA 265 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~~r~~NFIe~~~~~gwk~~~R~~~ii~dpgly~~~k~~~~ 265 (450)
||.|++.|++.+.+|||||||||+||||+|+++|.++|+..+.+.+|+++....++....|+.+...++..+..
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~------ 148 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFF------ 148 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEE------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccc------
Confidence 99999999997779999999999999999999999999987667899988765544222343332222211110
Q ss_pred hccccCCCCCcceeeecceeEEecHHHHHHhHhccCCchHHHHh-hhccCCCCCCcchhhhcccccccccccccCCeeEE
Q 013052 266 WTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLM-YYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYI 344 (450)
Q Consensus 266 ~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dnlpr~ll~-yf~nt~~pDE~yFqTvl~Ns~~f~~t~vn~nLRyI 344 (450)
.++ ++|+|||||+|||++|+||+. +..+....+ |++++++|||.||||+++|++.|+++++|+++|||
T Consensus 149 ---~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 149 ---RKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp ---EEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred ---ccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 011 899999999999999999995 444444444 45599999999999999999889999999999999
Q ss_pred ecCCCCCCCCcc-----cCHHHHHHHh
Q 013052 345 AWDNPPKQHPVK-----LTMKDFDKMV 366 (450)
Q Consensus 345 ~W~~~~~~~P~~-----l~~~D~~~l~ 366 (450)
+|++..++||++ ++++|+++|+
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 999444666654 5778888774
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=90.67 E-value=17 Score=37.77 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEeccc-ceee
Q 013052 101 TEPPRLAYLISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQS-NLVT 176 (450)
Q Consensus 101 ~~p~kiAYLI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr-~~V~ 176 (450)
+..|++..+|-+++ ..+.+.++|+.|.. |.+.=+|-+|..|++.-.+.++++.+..+ ..++++++... ....
T Consensus 37 ~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~g 112 (384)
T TIGR03469 37 EAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPPG 112 (384)
T ss_pred CCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCCC
Confidence 45678999999988 67899999999853 43445677787777654444444332111 12378887632 2345
Q ss_pred ecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHh
Q 013052 177 YKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVF 223 (450)
Q Consensus 177 Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~l 223 (450)
|+|- ..|.-.+++.+-+...+-||++++.+.+.+ +.+.|.+..
T Consensus 113 ~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~--~p~~l~~lv 155 (384)
T TIGR03469 113 WSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAH--GPDNLARLV 155 (384)
T ss_pred Ccch--HHHHHHHHHHHhccCCCCCEEEEECCCCCC--ChhHHHHHH
Confidence 5553 344444555554333347899999999886 334444333
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=86.58 E-value=25 Score=36.37 Aligned_cols=106 Identities=8% Similarity=0.037 Sum_probs=62.1
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCC--eEEecccceeee
Q 013052 103 PPRLAYLISGTKGDSHRMMRTLQAVY---HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVEN--VRVMLQSNLVTY 177 (450)
Q Consensus 103 p~kiAYLI~~hk~d~~~l~RLL~aLy---hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~N--V~vv~kr~~V~W 177 (450)
.|++..+|-+++ ..+.+++.|+++- .|+..++| +|..+++...+.++++. ..+++ |+++.......|
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~------~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLR------ADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHH------HhCCCCceEEEECCCCCCC
Confidence 467899999988 4568888888874 36656666 66666554344444332 23454 555643333333
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcc
Q 013052 178 KGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSN 225 (450)
Q Consensus 178 gg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~ 225 (450)
.+ .+.+..++ ++. .+.||++.+.+.+.| +.+-|.+....
T Consensus 112 ~~--K~~~l~~~----~~~-a~ge~i~~~DaD~~~--~p~~L~~lv~~ 150 (373)
T TIGR03472 112 NR--KVSNLINM----LPH-ARHDILVIADSDISV--GPDYLRQVVAP 150 (373)
T ss_pred Ch--HHHHHHHH----HHh-ccCCEEEEECCCCCc--ChhHHHHHHHH
Confidence 22 33333333 232 457899999998877 56666555433
No 6
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=83.76 E-value=18 Score=33.78 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=58.9
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcC---C-CCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCc
Q 013052 105 RLAYLISGTKGDSHRMMRTLQAVYH---P-RNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGP 180 (450)
Q Consensus 105 kiAYLI~~hk~d~~~l~RLL~aLyh---P-~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~ 180 (450)
+++.+|.+++ +.+.+.++|+.+.. | .+.=+|=+|-.+++.....++.+. ...++|+++..... |.
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~~----~~ 69 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPKR----IQ 69 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCCC----Cc
Confidence 4677888887 67889998888842 2 233344446555554444444332 23567888864421 21
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 181 TMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 181 S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
-.|--.+++.+ +.||++.|.+.|.+ +.+.|...+.
T Consensus 70 --~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 70 --SAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred --hHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 12333333322 57999999999986 5555655553
No 7
>PRK11204 N-glycosyltransferase; Provisional
Probab=82.29 E-value=31 Score=35.91 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeee
Q 013052 101 TEPPRLAYLISGTKGDSHRMMRTLQAVY---HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTY 177 (450)
Q Consensus 101 ~~p~kiAYLI~~hk~d~~~l~RLL~aLy---hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 177 (450)
+..|+++.+|-+|+ ..+.+.+.++++. .|+..++| +|-.+++...+.+++.. ...+++.++.... .
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEILDRLA------AQIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHHH------HhCCcEEEEEcCC---C
Confidence 34578999999998 5688888888874 35445555 56555555444444332 3467888876222 1
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHH
Q 013052 178 KGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLY 221 (450)
Q Consensus 178 gg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~ 221 (450)
+| ...| +..+++. .+.||++.+.+.+.| +.+-|.+
T Consensus 120 ~G--ka~a----ln~g~~~-a~~d~i~~lDaD~~~--~~d~L~~ 154 (420)
T PRK11204 120 QG--KANA----LNTGAAA-ARSEYLVCIDGDALL--DPDAAAY 154 (420)
T ss_pred CC--HHHH----HHHHHHH-cCCCEEEEECCCCCC--ChhHHHH
Confidence 23 2222 2233332 357999999999987 3444433
No 8
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=80.62 E-value=33 Score=32.43 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC---CC--CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccce
Q 013052 100 RTEPPRLAYLISGTKGDSHRMMRTLQAVYH---PR--NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNL 174 (450)
Q Consensus 100 ~~~p~kiAYLI~~hk~d~~~l~RLL~aLyh---P~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~ 174 (450)
...+|+++.+|.+++ +.+.+.++|+.+.. |. ..++|..|...+ ...+.+..+. .. +|.++....
T Consensus 25 ~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d-~t~~~~~~~~-------~~-~v~~i~~~~- 93 (251)
T cd06439 25 PAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD-GTAEIAREYA-------DK-GVKLLRFPE- 93 (251)
T ss_pred CCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCc-cHHHHHHHHh-------hC-cEEEEEcCC-
Confidence 355689999999998 67889888888743 33 357777666543 3333333321 11 677765322
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhccc
Q 013052 175 VTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNM 226 (450)
Q Consensus 175 V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~ 226 (450)
..| ...|--.+++.+ .-||++++.+.+.|- .+.|.+.+...
T Consensus 94 --~~g--~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~~~~ 134 (251)
T cd06439 94 --RRG--KAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLVRHF 134 (251)
T ss_pred --CCC--hHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHHHHh
Confidence 222 344444444433 239999999999995 56565555443
No 9
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=79.97 E-value=23 Score=38.72 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=61.8
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeee
Q 013052 102 EPPRLAYLISGTKGDSHRMMRTLQA----VYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTY 177 (450)
Q Consensus 102 ~p~kiAYLI~~hk~d~~~l~RLL~a----LyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 177 (450)
+.|+++.+|-+|+ ..+.+.++|+. ++.|+-.++|=.|... +.-.+.+++. ...++|++++.... -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~nd-d~T~~~v~~l------~~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYPND-PATLREVDRL------AARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECCCC-hhHHHHHHHH------HHHCCCeEEEEeCC---C
Confidence 4788999999998 66777777764 3346656666665433 3323333332 23578887654221 2
Q ss_pred cCccHHHHHHHHHHHHHh----cCCCCceEEeccCCccccc
Q 013052 178 KGPTMIACTLQAIAILLK----ESLEWDWFINLSASDYPLV 214 (450)
Q Consensus 178 gg~S~V~AtL~~~a~LL~----~~~~wdyfinLSgsDyPLk 214 (450)
|+.+-..|--.+++.+.. .+.++|+++.+-+.|.|=.
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~P 173 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHP 173 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCc
Confidence 334555555555554432 2346899999999888543
No 10
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=79.60 E-value=45 Score=34.15 Aligned_cols=112 Identities=10% Similarity=0.067 Sum_probs=60.6
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC---------C-CCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEe
Q 013052 100 RTEPPRLAYLISGTKGDSHRMMRTLQAVYH---------P-RNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVM 169 (450)
Q Consensus 100 ~~~p~kiAYLI~~hk~d~~~l~RLL~aLyh---------P-~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv 169 (450)
..+.+.+..+|-+++ ..+.+.++++.+.. + .+.=+|=||-.|++.-.+.+.++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 467789999999998 66788888877642 2 2344666677666554444444322100 011357776
Q ss_pred cccceeeecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcc-cccchhHHHHHhc
Q 013052 170 LQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDY-PLVTQDDMLYVFS 224 (450)
Q Consensus 170 ~kr~~V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDy-PLkt~ddi~~~ls 224 (450)
..... .| .-.|.-.+++.+ .-||++++-+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G--~~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KG--KGGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CC--hHHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53221 12 223333333332 2378888887764 3334444555554
No 11
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=78.66 E-value=75 Score=33.72 Aligned_cols=106 Identities=10% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeE-EEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeee
Q 013052 102 EPPRLAYLISGTKGDSHRMMRTLQAVY---HPRNHY-ILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTY 177 (450)
Q Consensus 102 ~p~kiAYLI~~hk~d~~~l~RLL~aLy---hP~n~y-~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 177 (450)
..|+++.+|-+|+ ..+.+.++++++. .|...+ +|=+|-.++++..+.+++.. ..++++.++.... .
T Consensus 47 ~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~- 116 (439)
T TIGR03111 47 KLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D- 116 (439)
T ss_pred CCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C-
Confidence 4578999999998 6689999998884 344433 56667777665444443321 2356676642111 1
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccc-hhHHHHHhc
Q 013052 178 KGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVT-QDDMLYVFS 224 (450)
Q Consensus 178 gg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt-~ddi~~~ls 224 (450)
+|.+ .|+..+++. .+-||++.+.+.+.|-.. ..++...|.
T Consensus 117 ~Gka------~AlN~gl~~-s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 117 QGKA------KALNAAIYN-SIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred CCHH------HHHHHHHHH-ccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 3422 122223332 235789999999998332 233444443
No 12
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=74.92 E-value=35 Score=31.56 Aligned_cols=103 Identities=20% Similarity=0.149 Sum_probs=57.1
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC--CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeec
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYH---PR--NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYK 178 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyh---P~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wg 178 (450)
|++..+|-+++.+.+.+++.|++|-. |+ -.++| +|-.+++.-.+.++.+. .. .++.++... ..+|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~~~~------~~-~~~~~~~~~--~~~~ 70 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYV-LDDGRRPELRALAAELG------VE-YGYRYLTRP--DNRH 70 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEE-EcCCCchhHHHHHHHhh------cc-cCceEEEeC--CCCC
Confidence 46788888888556778888888843 33 24444 67666655444443321 11 144444322 2344
Q ss_pred CccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcc
Q 013052 179 GPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSN 225 (450)
Q Consensus 179 g~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~ 225 (450)
+.. .+.-.|++. .+.||++.|.+.|++ +.+.|.+.+..
T Consensus 71 ~~~--~~~n~~~~~-----a~~d~i~~lD~D~~~--~~~~l~~l~~~ 108 (234)
T cd06421 71 AKA--GNLNNALAH-----TTGDFVAILDADHVP--TPDFLRRTLGY 108 (234)
T ss_pred CcH--HHHHHHHHh-----CCCCEEEEEccccCc--CccHHHHHHHH
Confidence 322 111222222 257999999999998 44566555543
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=72.58 E-value=11 Score=35.13 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccC--CeEEecccceeeec
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVE--NVRVMLQSNLVTYK 178 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~--NV~vv~kr~~V~Wg 178 (450)
|+++.+|.+++ ..+.+.+.|+++-+ |+-.++| +|-.+++...+.+++..+ .++ .|+++.... -.
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~---~~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPR---NP 69 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCC---CC
Confidence 56899999987 67899999999964 5545555 454343332223333222 233 356654321 11
Q ss_pred Cc-cHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhccc-CCCCceee
Q 013052 179 GP-TMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNM-SKNLNFIE 234 (450)
Q Consensus 179 g~-S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~-~r~~NFIe 234 (450)
|. +...|.-++++. .+.||+++|.+.+.| ..+-|...+... ..+..++.
T Consensus 70 g~~~k~~a~n~~~~~-----~~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALAA-----ARGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHHh-----cCCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 22 333444444443 237899999999998 444444433322 34566664
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=70.15 E-value=27 Score=32.74 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=56.6
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecC
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYH---PR-NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKG 179 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyh---P~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg 179 (450)
|++..+|.+|+ ..+.+.++|++|.. |. ..-+|=+|. +++.....+++..+..+ ....+|.++...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 36888999998 68899999999853 33 233445786 66554444443321100 112455554432221 2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHH
Q 013052 180 PTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLY 221 (450)
Q Consensus 180 ~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~ 221 (450)
+. ..| +...++. .+.||++++-+.+++ ..+-|.+
T Consensus 74 ~k-~~a----~n~g~~~-a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 YK-AGA----LAEGMKV-AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred Cc-hHH----HHHHHHh-CCCCEEEEEcCCCCC--ChHHHHH
Confidence 21 111 1222222 357999999999987 4444544
No 15
>PRK10063 putative glycosyl transferase; Provisional
Probab=67.96 E-value=98 Score=30.10 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC-----CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeec
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYH-----PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYK 178 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyh-----P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wg 178 (450)
|++..+|.+++ ..+.+.+.|+.|.. ..+.=+|=+|..|++.-.+.++.+. ...+++++...+ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 57888999988 68889998888841 2345577788888776544444321 112577765432 2
Q ss_pred CccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHh
Q 013052 179 GPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVF 223 (450)
Q Consensus 179 g~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~l 223 (450)
|.. .|--.+++.+ .-||++.|.+.|...-...++...+
T Consensus 69 G~~--~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 322 2333344433 2489999999999876443444444
No 16
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=67.62 E-value=61 Score=30.66 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=57.4
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHH
Q 013052 105 RLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIA 184 (450)
Q Consensus 105 kiAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~ 184 (450)
++..+|.+++ ..+.+.++|++|..--.. +|=+|..|++... ++++ ..++.++.. .|+|++.-.
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~~~e-iivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~~ 63 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWAVDE-IIVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQR 63 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcccCE-EEEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHHH
Confidence 3677888887 688999999999632134 4457877766533 3322 235666542 567764222
Q ss_pred HHHHHHHHHHhcCCCCceEEeccCCcccccc-hhHHHHHhcc
Q 013052 185 CTLQAIAILLKESLEWDWFINLSASDYPLVT-QDDMLYVFSN 225 (450)
Q Consensus 185 AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt-~ddi~~~ls~ 225 (450)
+ .+++. ..-||++.|.+.+.+-.. .+++.+.+..
T Consensus 64 ---n---~~~~~-a~~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 64 ---N---FALEL-ATNDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred ---H---HHHHh-CCCCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 1 22221 234699999999986433 3345555543
No 17
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=66.94 E-value=67 Score=28.65 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=50.3
Q ss_pred EEEecCCCHHHHHHHHHHHc------CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccH
Q 013052 109 LISGTKGDSHRMMRTLQAVY------HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTM 182 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLy------hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~ 182 (450)
+|.+++ ..+.+.++++.|. .+.-.++| +|-.+++...+.+..+. ...+||.++.... ..| .
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~------~~~~~i~~i~~~~--n~G---~ 68 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEIIF-VDDGSTDRTLEILRELA------ARDPRVKVIRLSR--NFG---Q 68 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEE-EeCCCCccHHHHHHHHH------hhCCCEEEEEecC--CCC---c
Confidence 466776 5678887776653 23334555 56666654443343332 2356888765321 222 2
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 183 IACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 183 V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
..|.-.+++.+ .-||++.+.+.+. + +.+.+...++
T Consensus 69 ~~a~n~g~~~a-----~~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 69 QAALLAGLDHA-----RGDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHHhc-----CCCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 23333333332 2288888887555 4 4445554444
No 18
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=66.83 E-value=40 Score=33.67 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCCCC--eEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCcc
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYHPRN--HYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPT 181 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyhP~n--~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S 181 (450)
++++-+|..|. ..+.+...|..|..-.. .++|=+|-.+++...+.++.. .+++|.++.......|+|--
T Consensus 3 ~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg~ 73 (305)
T COG1216 3 PKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGGF 73 (305)
T ss_pred cceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhhh
Confidence 67888888888 68888888888864333 333356887777766555431 17899999877666666544
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEeccCCc
Q 013052 182 MIACTLQAIAILLKESLEWDWFINLSASD 210 (450)
Q Consensus 182 ~V~AtL~~~a~LL~~~~~wdyfinLSgsD 210 (450)
. .+++.++.... +|++ +-..|
T Consensus 74 n-----~g~~~a~~~~~--~~~l-~LN~D 94 (305)
T COG1216 74 N-----RGIKYALAKGD--DYVL-LLNPD 94 (305)
T ss_pred h-----HHHHHHhcCCC--cEEE-EEcCC
Confidence 3 56777776432 2444 44555
No 19
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=66.37 E-value=50 Score=35.02 Aligned_cols=99 Identities=11% Similarity=0.144 Sum_probs=60.5
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeec
Q 013052 102 EPPRLAYLISGTKGDSHRMMRTLQAVY---HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYK 178 (450)
Q Consensus 102 ~p~kiAYLI~~hk~d~~~l~RLL~aLy---hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wg 178 (450)
..|+++.+|-+|+ +.+.+.++++++- .|+.. +|-+|-.+++...+.+.+.. ...++++++... ..+
T Consensus 73 ~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~------~~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALL------AEDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHH------HhCCCEEEEEeC---CCC
Confidence 4578999999998 6678888888874 35545 45566555554444444432 245678776521 233
Q ss_pred CccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHH
Q 013052 179 GPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDML 220 (450)
Q Consensus 179 g~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~ 220 (450)
| . . .++...++. .+.||++.+.+.+.| ..+.+.
T Consensus 142 G--k-a---~AlN~gl~~-a~~d~iv~lDAD~~~--~~d~L~ 174 (444)
T PRK14583 142 G--K-A---IALRMGAAA-ARSEYLVCIDGDALL--DKNAVP 174 (444)
T ss_pred C--H-H---HHHHHHHHh-CCCCEEEEECCCCCc--CHHHHH
Confidence 3 1 1 222333332 467999999999987 444443
No 20
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=65.68 E-value=43 Score=34.10 Aligned_cols=94 Identities=10% Similarity=0.145 Sum_probs=52.5
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHH-----------cCCCCeEEEEEc--CC-CChhHHHHHHhhhcCCCccc---cc
Q 013052 103 PPRLAYLISGTKGDS--HRMMRTLQAV-----------YHPRNHYILHLD--LE-APPRERLDLALSVKNDPIFF---EV 163 (450)
Q Consensus 103 p~kiAYLI~~hk~d~--~~l~RLL~aL-----------yhP~n~y~IHlD--~k-s~~~~~~~L~~~v~~~~~~~---~~ 163 (450)
...+|||+.|..|-. .....+.+++ .||.|.++ +| .+ .+.+ ++....+..+... .-
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~i~vd---~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKDLSKS---EFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCcCCHH---HHHHHHHHhccCCcccCC
Confidence 478999999987542 2345555665 25655444 47 32 2222 3333333222222 23
Q ss_pred CCeEEecccceeeecCccHHHHHHHHHHHHHhcCCCCceEEeccC
Q 013052 164 ENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSA 208 (450)
Q Consensus 164 ~NV~vv~kr~~V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSg 208 (450)
..|.++.+. -.|-.+..+++--.+++.++.-+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 456666543 33444445555566677888999999886
No 21
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=65.27 E-value=86 Score=29.05 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=54.7
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 106 LAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 106 iAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+..+|.+|++..+.+.++|+.+......=+|=+|-.+++.....+... ...+.+.++.. .++|. ..|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~----~~~g~--~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITV----PHPGK--RRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEec----CCCCh--HHH
Confidence 567888998544899999999976323334444555554443333211 23456666543 23443 333
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccc
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVT 215 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt 215 (450)
--.+++.+ +-||++.|.+.+.|-..
T Consensus 69 ~n~g~~~a-----~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 69 LAEGIRHV-----TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHHHHh-----CCCEEEEECCCceeChh
Confidence 33344332 56999999999998754
No 22
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=64.85 E-value=55 Score=30.46 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=74.2
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHH
Q 013052 109 LISGTKGDSHRMMRTLQAV----YHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIA 184 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aL----yhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~ 184 (450)
+++++.|-..||.+|++.+ ++++.+++=.-|..+ ...-.++.+.......+.+.+..+-+.+. -.+.-++.+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S-~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQS-RSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCccc-HHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 4566667788999999999 654444443434333 22122233221111112234455544432 1234478888
Q ss_pred HHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcccCCCCceeeccc
Q 013052 185 CTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTL 237 (450)
Q Consensus 185 AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~~r~~NFIe~~~ 237 (450)
+.+.++..+.+..++ =-+-|=.|.++|+.=..-+.+.|.-.....-|||...
T Consensus 80 ~~~~~~~il~r~rPd-vii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRERPD-VIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhCCC-EEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999999999885432 2334567889999988888887765444567888653
No 23
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.57 E-value=81 Score=28.40 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHH-HhhhcCCCcccccCCeEEecccceeeecC
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDL-ALSVKNDPIFFEVENVRVMLQSNLVTYKG 179 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L-~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg 179 (450)
|++..+|.+++++.+.++++|+.|.. +...+ |=+|..+++..-..+ +.+. ...+++.++.... -.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~ei-ivvd~gs~d~~~~~~~~~~~------~~~~~~~~~~~~~---~~g 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWEL-CIADDASTDPEVKRVLKKYA------AQDPRIKVVFREE---NGG 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEE-EEEeCCCCChHHHHHHHHHH------hcCCCEEEEEccc---CCC
Confidence 46788899998443899999999863 22234 445555544322222 2221 1235666653221 122
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEeccCCcccc
Q 013052 180 PTMIACTLQAIAILLKESLEWDWFINLSASDYPL 213 (450)
Q Consensus 180 ~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPL 213 (450)
...|--.+++.+ .-||+..+.+.|.+-
T Consensus 71 --~~~a~n~g~~~a-----~~d~i~~ld~D~~~~ 97 (202)
T cd04184 71 --ISAATNSALELA-----TGEFVALLDHDDELA 97 (202)
T ss_pred --HHHHHHHHHHhh-----cCCEEEEECCCCcCC
Confidence 333433444432 348999999999763
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=64.18 E-value=41 Score=28.57 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=60.7
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVY---HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLy---hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.+.++|.+|- ++...++| +|-.+++...+.+..+.+ ...++.++...... ..-.+
T Consensus 3 vip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n~-----g~~~~ 69 (169)
T PF00535_consen 3 VIPTYN-EAEYLERTLESLLKQTDPDFEIIV-VDDGSTDETEEILEEYAE------SDPNIRYIRNPENL-----GFSAA 69 (169)
T ss_dssp EEEESS--TTTHHHHHHHHHHHSGCEEEEEE-EECS-SSSHHHHHHHHHC------CSTTEEEEEHCCCS-----HHHHH
T ss_pred EEEeeC-CHHHHHHHHHHHhhccCCCEEEEE-eccccccccccccccccc------cccccccccccccc-----ccccc
Confidence 566666 5778888887764 24455655 555555555555665432 35688887644321 34445
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccc-hhHHHHHhccc
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVT-QDDMLYVFSNM 226 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt-~ddi~~~ls~~ 226 (450)
.-.+++.+. -+|+..+.+.|++... .+++.+.+.+.
T Consensus 70 ~n~~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 70 RNRGIKHAK-----GEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp HHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred ccccccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 554555543 2499999999999887 77777777653
No 25
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=63.18 E-value=4.2 Score=29.21 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=24.4
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCeEEEEEcC
Q 013052 110 ISGTKGDSHRMMRTLQAVYHPRNHYILHLDL 140 (450)
Q Consensus 110 I~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ 140 (450)
.++|. |.++|..+++.+ .|++.++||=|.
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCCC
Confidence 45777 999999999999 799999999663
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=60.20 E-value=1.4e+02 Score=27.27 Aligned_cols=104 Identities=9% Similarity=0.094 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccC--CeEEecccceeeec
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVY---HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVE--NVRVMLQSNLVTYK 178 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLy---hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~--NV~vv~kr~~V~Wg 178 (450)
|++..+|-+++ ..+.+.++|+.|. .|...++| ||-.+++...+.++++.+ .++ +++++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~eiiv-Vdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYEILF-CVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeEEEE-EeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 45788899988 4567888888885 24444444 555555544444444322 233 34444332222 2
Q ss_pred CccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 179 GPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 179 g~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
+.....+ +..+++. ...||++++.+.+.+ +.+-|.+.+.
T Consensus 71 ~~~~~~~----~n~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 71 INPKVNN----LIKGYEE-ARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred CCHhHHH----HHHHHHh-CCCCEEEEECCCceE--ChhHHHHHHH
Confidence 2222222 2223332 346899999887764 5666655443
No 27
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=59.93 E-value=85 Score=30.54 Aligned_cols=85 Identities=8% Similarity=0.055 Sum_probs=54.4
Q ss_pred cCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHHHHHHHHH
Q 013052 113 TKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAI 192 (450)
Q Consensus 113 hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~AtL~~~a~ 192 (450)
++.+.+.+++++++|.. ++.-+|=||-.++.. ..+...+ ...++|+++...... | .-.|-=.+++.
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~--G---~a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ--G---IAGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc--c---hHHHHHHHHHH
Confidence 44357899999999974 566788899876433 2222221 245788888643221 2 22233445666
Q ss_pred HHhcCCCCceEEeccCCcccc
Q 013052 193 LLKESLEWDWFINLSASDYPL 213 (450)
Q Consensus 193 LL~~~~~wdyfinLSgsDyPL 213 (450)
|++ .+.||+++|-+.+.|-
T Consensus 69 a~~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFR--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred HHH--CCCCEEEEECCCCCCC
Confidence 654 3579999999999986
No 28
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=57.04 E-value=95 Score=27.41 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=57.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYHP----RNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIA 184 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyhP----~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~ 184 (450)
+|.+|+ ..+.+.++|+.+..- .+.=+|=+|..+++...+.+..+. ...+.++++..... .+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~------~~~~~~~~~~~~~n-----~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA------ARVPRVRVIRLSRN-----FGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH------HhCCCeEEEEccCC-----CCccH
Confidence 455666 677888888877532 234455566555555455554432 22344444432211 12334
Q ss_pred HHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcc-cCCCCceee
Q 013052 185 CTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSN-MSKNLNFIE 234 (450)
Q Consensus 185 AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~-~~r~~NFIe 234 (450)
|.-.+++.+ .. ||++.|.+.|.+ +.+.|...+.. ...+.+++-
T Consensus 70 a~n~g~~~a----~g-d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAA----RG-DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHh----cC-CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 444444443 22 899999999875 56666665553 233445543
No 29
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=55.64 E-value=72 Score=36.59 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=59.5
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHH----HHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceee
Q 013052 101 TEPPRLAYLISGTKGDSHRMMRTLQ----AVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVT 176 (450)
Q Consensus 101 ~~p~kiAYLI~~hk~d~~~l~RLL~----aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~ 176 (450)
..+++++.+|=+|+ ....+.++++ +++.|+-.+++=.|.. ++.-.+.+... ...+|+++++-....
T Consensus 60 ~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l------~~~~p~~~~v~~~~~-- 129 (727)
T PRK11234 60 PDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAV------CARFPNVHKVVCARP-- 129 (727)
T ss_pred CCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHH------HHHCCCcEEEEeCCC--
Confidence 45689999999998 6666666666 4577887777766633 22212333322 235688875432221
Q ss_pred ecCccHHHHHHHHHHHHHhc----CCCCceEEeccCCcccc
Q 013052 177 YKGPTMIACTLQAIAILLKE----SLEWDWFINLSASDYPL 213 (450)
Q Consensus 177 Wgg~S~V~AtL~~~a~LL~~----~~~wdyfinLSgsDyPL 213 (450)
|.-+-..|--.+++.+.+. ..+++.++.+-+.|.|=
T Consensus 130 -g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~ 169 (727)
T PRK11234 130 -GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVIS 169 (727)
T ss_pred -CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCC
Confidence 2224444444444444332 34678888888888753
No 30
>PRK10073 putative glycosyl transferase; Provisional
Probab=53.69 E-value=1.2e+02 Score=31.00 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=57.5
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCc
Q 013052 103 PPRLAYLISGTKGDSHRMMRTLQAVYHP--RNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGP 180 (450)
Q Consensus 103 p~kiAYLI~~hk~d~~~l~RLL~aLyhP--~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~ 180 (450)
.|.+..+|-+++ ..+.+.+.|+.|..- .+.=+|=||-.|++...+-+..+. ...++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~------~~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA------ENYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH------hhCCCEEEEECCC----CCh
Confidence 467899999988 568899999998632 233344455555555444444442 2457888876432 343
Q ss_pred cHHHHHHHHHHHHHhcCCCCceEEeccCCcccc
Q 013052 181 TMIACTLQAIAILLKESLEWDWFINLSASDYPL 213 (450)
Q Consensus 181 S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPL 213 (450)
..|--.+++.+ .=||+.++.+.|+..
T Consensus 74 --~~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 --SVARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred --HHHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 33333333332 238999999999954
No 31
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=51.28 E-value=2.2e+02 Score=26.97 Aligned_cols=106 Identities=7% Similarity=0.039 Sum_probs=58.5
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeee
Q 013052 102 EPPRLAYLISGTKGDSHRMMRTLQAV----YHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTY 177 (450)
Q Consensus 102 ~p~kiAYLI~~hk~d~~~l~RLL~aL----yhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W 177 (450)
..|++..+|-+++ ..+.+..++..| ....+.=+|-+|-.|++.-.+.++++.+.. ...+|.++.... -
T Consensus 7 ~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~---n 78 (243)
T PLN02726 7 GAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG---K 78 (243)
T ss_pred CCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC---C
Confidence 4578999999987 677777766555 223344567777777665444444332110 123565554211 1
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 178 KGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 178 gg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
.|.+ .|-..+++.+ .-||++.+.+.+.+ +.+.|...+.
T Consensus 79 ~G~~--~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 79 LGLG--TAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred CCHH--HHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 2322 2333333322 34899999998874 5555655553
No 32
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=51.01 E-value=1.6e+02 Score=27.22 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=58.7
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQ 188 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~AtL~ 188 (450)
+|.++++..+.+.++|+.+... +.-+|=+|..+++... ....+ ..+++.++.... .. | ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~-~~~~~--------~~~~i~~i~~~~--n~-G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIE-LRLRL--------NSEKIELIHLGE--NL-G--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHH-HHhhc--------cCCcEEEEECCC--ce-e--hHHhhhH
Confidence 5667775448999999999865 5555668877655432 22111 246777765322 22 2 2333334
Q ss_pred HHHHHHhcCCCCceEEeccCCcccccchhHHHHHh
Q 013052 189 AIAILLKESLEWDWFINLSASDYPLVTQDDMLYVF 223 (450)
Q Consensus 189 ~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~l 223 (450)
+++.+.. .+.||++++.+.+++ +.+.|.+.+
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVP--PPDMVEKLL 97 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCc--CHhHHHHHH
Confidence 4444432 368999999999996 477776653
No 33
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=46.53 E-value=1.8e+02 Score=27.36 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecC
Q 013052 104 PRLAYLISGTKGDSHRMMRTLQAVYH---PR-NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKG 179 (450)
Q Consensus 104 ~kiAYLI~~hk~d~~~l~RLL~aLyh---P~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg 179 (450)
|.+..+|-+++ ..+.+.++|+.+.. |. +.=+|-||-.+++...+.++.+.. ....+|.++.. ....|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~---~~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPP---SQPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecC---CCCCc
Confidence 46788899988 67899999999853 32 223555666666554444433210 01123333332 12233
Q ss_pred ccHHHHHHHHHHHHHhcCCCCceEEeccCCcccc
Q 013052 180 PTMIACTLQAIAILLKESLEWDWFINLSASDYPL 213 (450)
Q Consensus 180 ~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPL 213 (450)
.+ .|-- ..++. ..-||++.+.+.|.+-
T Consensus 72 ~~--~a~n----~g~~~-a~gd~i~~~DaD~~~~ 98 (241)
T cd06427 72 KP--KACN----YALAF-ARGEYVVIYDAEDAPD 98 (241)
T ss_pred hH--HHHH----HHHHh-cCCCEEEEEcCCCCCC
Confidence 33 2222 23332 2358999999998854
No 34
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=44.56 E-value=1.3e+02 Score=30.69 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=16.7
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc
Q 013052 103 PPRLAYLISGTKGDSHRMMRTLQAVY 128 (450)
Q Consensus 103 p~kiAYLI~~hk~d~~~l~RLL~aLy 128 (450)
.+.+|||+.|..|.......+.++|-
T Consensus 22 rl~hAyLf~G~~G~~~~A~~~A~~ll 47 (290)
T PRK07276 22 RLNHAYLFSGDFASFEMALFLAQSLF 47 (290)
T ss_pred CcceeeeeeCCccHHHHHHHHHHHHc
Confidence 47789999987765444444555553
No 35
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=40.66 E-value=6e+02 Score=28.97 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=61.6
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH---cCCC-CeEEEEEcCCCChh--------------HHHHHHhhhcCCCccccc
Q 013052 102 EPPRLAYLISGTKGDSHRMMRTLQAV---YHPR-NHYILHLDLEAPPR--------------ERLDLALSVKNDPIFFEV 163 (450)
Q Consensus 102 ~p~kiAYLI~~hk~d~~~l~RLL~aL---yhP~-n~y~IHlD~ks~~~--------------~~~~L~~~v~~~~~~~~~ 163 (450)
..|+++.+|-+|+.+.+.++++++++ +.|. +.=++=+|-.+++. .+.++++..+ .
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~-------~ 201 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR-------K 201 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-------H
Confidence 44789999999986666667777665 3453 32233445444321 2344444322 2
Q ss_pred CCeEEecccceeeecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccch-hHHHHHhcccCCCCcee
Q 013052 164 ENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQ-DDMLYVFSNMSKNLNFI 233 (450)
Q Consensus 164 ~NV~vv~kr~~V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~-ddi~~~ls~~~r~~NFI 233 (450)
.+|+++.... ..++-. .++..+++. .+-||++.+.+.+.|-... .++..+|.+. .+..++
T Consensus 202 ~~v~yi~r~~--n~~~KA------gnLN~al~~-a~gd~Il~lDAD~v~~pd~L~~~v~~f~~d-p~v~~V 262 (713)
T TIGR03030 202 LGVNYITRPR--NVHAKA------GNINNALKH-TDGELILIFDADHVPTRDFLQRTVGWFVED-PKLFLV 262 (713)
T ss_pred cCcEEEECCC--CCCCCh------HHHHHHHHh-cCCCEEEEECCCCCcChhHHHHHHHHHHhC-CCEEEE
Confidence 3677665322 222211 122333443 3459999999999995432 3444555432 244444
No 36
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=40.46 E-value=2e+02 Score=28.36 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=59.1
Q ss_pred EEEEecCCCH-HHHHHHHHHHcC---CC-CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccH
Q 013052 108 YLISGTKGDS-HRMMRTLQAVYH---PR-NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTM 182 (450)
Q Consensus 108 YLI~~hk~d~-~~l~RLL~aLyh---P~-n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~ 182 (450)
.+|.+++ .. +.+.++|.+|.. +. ..=+|-||-.|++.....+.+... ....++|+++..... .|++
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~- 72 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI- 72 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH-
Confidence 3566776 55 899999999863 11 235889998887665444432110 134578888753221 2333
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 183 IACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 183 V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
.|--.+++.+ .-||+++|.+.+.+ +.+-|...+.
T Consensus 73 -~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll~ 106 (299)
T cd02510 73 -RARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLLA 106 (299)
T ss_pred -HHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHHH
Confidence 3333333332 24899999999997 4554544443
No 37
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=40.36 E-value=1.3e+02 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=19.8
Q ss_pred eecCccHHHHHHHHHHHHHhcCCCCceEEeccCC
Q 013052 176 TYKGPTMIACTLQAIAILLKESLEWDWFINLSAS 209 (450)
Q Consensus 176 ~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgs 209 (450)
-|..-.|-...-+++--.|++.++.-+||+++.+
T Consensus 101 i~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 101 IHEADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred EechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 3444455554455554555666777777777754
No 38
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=40.35 E-value=15 Score=29.90 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=15.2
Q ss_pred ccCCcccccchhHHHHHh
Q 013052 206 LSASDYPLVTQDDMLYVF 223 (450)
Q Consensus 206 LSgsDyPLkt~ddi~~~l 223 (450)
+.|.|||++|+.||...|
T Consensus 11 ~~~a~FPI~s~~eL~~al 28 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPAL 28 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-
T ss_pred HhcCCCCCCCHHHHHHhC
Confidence 468899999999998887
No 39
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=37.86 E-value=1.8e+02 Score=29.17 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=20.2
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCceEEeccC
Q 013052 175 VTYKGPTMIACTLQAIAILLKESLEWDWFINLSA 208 (450)
Q Consensus 175 V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSg 208 (450)
+-|..-.|-.+.-+++=-.|++.++.-+||++|.
T Consensus 93 II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~ 126 (261)
T PRK05818 93 IIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTR 126 (261)
T ss_pred EeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEEC
Confidence 4444445555555555455566677777777774
No 40
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=37.81 E-value=2.1e+02 Score=32.79 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=59.7
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCeEEEEE--cCCCChhHHHHHHhhhcCCCcccccCCeEEeccccee
Q 013052 102 EPPRLAYLISGTKGDSHRMMRTLQA----VYHPRNHYILHL--DLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLV 175 (450)
Q Consensus 102 ~p~kiAYLI~~hk~d~~~l~RLL~a----LyhP~n~y~IHl--D~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V 175 (450)
++++++.+|=+|+ ..+.+.+++++ |+.|+-.++|=. |-..+.. .++.. ...+|++++|...+
T Consensus 69 ~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~---~~~~~------~~~~p~~~~v~~~~-- 136 (703)
T PRK15489 69 DEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETIT---EVERM------RRRYKRLVRVEVPH-- 136 (703)
T ss_pred CCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHH---HHHHH------hccCCcEEEEEcCC--
Confidence 4568999999998 78888888776 366865444432 2222222 23322 13467888765332
Q ss_pred eecC-ccHHHHHHHHHHHHHh----cCCCCceEEeccCCcccccchhHHHH
Q 013052 176 TYKG-PTMIACTLQAIAILLK----ESLEWDWFINLSASDYPLVTQDDMLY 221 (450)
Q Consensus 176 ~Wgg-~S~V~AtL~~~a~LL~----~~~~wdyfinLSgsDyPLkt~ddi~~ 221 (450)
+| -+--.|-=.+++.+++ ....++.++..-+.|.|=-.+-....
T Consensus 137 --~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~ 185 (703)
T PRK15489 137 --DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFN 185 (703)
T ss_pred --CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHH
Confidence 33 2333333333333322 13457779999999987544443333
No 41
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=37.32 E-value=2.6e+02 Score=25.77 Aligned_cols=105 Identities=12% Similarity=-0.015 Sum_probs=56.1
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.|.++|+.|.. |+..=+|-+|-.|++...+.+.++.+.. ...+++++.....-.+ +-+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~~-~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSPS-PKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCCC-CccHHHH
Confidence 566776 67899999999964 3345577778877765444444432211 1235555421110011 1223333
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccc-hhHHHHHhc
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVT-QDDMLYVFS 224 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt-~ddi~~~ls 224 (450)
.-.+++. ..-||++.|.+.|++.-. .+.+...+.
T Consensus 76 ~N~g~~~-----a~gd~i~~lD~D~~~~~~~l~~~~~~~~ 110 (219)
T cd06913 76 KNQAIAQ-----SSGRYLCFLDSDDVMMPQRIRLQYEAAL 110 (219)
T ss_pred HHHHHHh-----cCCCEEEEECCCccCChhHHHHHHHHHH
Confidence 3333332 234899999999985443 233444443
No 42
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.09 E-value=3.1e+02 Score=24.64 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=50.1
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.+.++|++|.. |... +|=+|..+++.-.+.+.+.. ...++.++... -.-|....+.
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~e-iiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~--~n~g~~~~~n- 69 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDH-IIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLP--ENLGGAGGFY- 69 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCce-EEEEECCCCcchHHHHHHhc-------CCCceEEEECc--cccchhhHHH-
Confidence 566776 57889999999963 2233 55567666655444444321 12235554322 1223322222
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccc
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPL 213 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPL 213 (450)
.++..+. ..+.||++.+.+.|.+-
T Consensus 70 --~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 70 --EGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred --HHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 2333333 24579999999999874
No 43
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.95 E-value=27 Score=30.90 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=9.8
Q ss_pred cchHHHHHHHHHHHHHHH
Q 013052 34 KWMVPFFASLLVSIMLLL 51 (450)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (450)
||++.+++.+++.++|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687655555444444444
No 44
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=36.55 E-value=4.7e+02 Score=26.54 Aligned_cols=108 Identities=9% Similarity=0.074 Sum_probs=61.3
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc-----CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEeccccee
Q 013052 101 TEPPRLAYLISGTKGDSHRMMRTLQAVY-----HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLV 175 (450)
Q Consensus 101 ~~p~kiAYLI~~hk~d~~~l~RLL~aLy-----hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V 175 (450)
++.+++..+|-+++ +.+.+.++++.+. .+.+.=+|=+|-.|++.-.+.+.+..+ ....+|..+..
T Consensus 3 ~~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~-----~~~~~v~~i~~---- 72 (325)
T PRK10714 3 HPIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQ-----APDSHIVAILL---- 72 (325)
T ss_pred CCCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHh-----hcCCcEEEEEe----
Confidence 34567899999988 6677777776653 123334566677666655444443321 11234543321
Q ss_pred eecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhccc
Q 013052 176 TYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNM 226 (450)
Q Consensus 176 ~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~ 226 (450)
-.++..-.|...+++.+ +-||++.+.+.+- .+.++|...+...
T Consensus 73 -~~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 73 -NRNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred -CCCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 12334444444444433 3589999988776 4667776666554
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=35.82 E-value=3e+02 Score=24.09 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=51.1
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.++++|.++.. +...++| +|-.+++...+.+..+.+. .....+++.... . |+....+
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~t~~~~~~~~~~----~~~~~~~~~~~~----~-~~~~~~~ 70 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFEVII-ADDGSTEETKELIEEFKSQ----FPIPIKHVWQED----E-GFRKAKI 70 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCEEEE-EeCCCchhHHHHHHHHHhh----cCCceEEEEcCC----c-chhHHHH
Confidence 566776 67899999999953 3334444 5665655444444333211 112334433221 1 2222222
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
--.+++. ..-+|++.|.+.|.| +.+-|...+.
T Consensus 71 ~n~g~~~-----a~g~~i~~lD~D~~~--~~~~l~~~~~ 102 (182)
T cd06420 71 RNKAIAA-----AKGDYLIFIDGDCIP--HPDFIADHIE 102 (182)
T ss_pred HHHHHHH-----hcCCEEEEEcCCccc--CHHHHHHHHH
Confidence 2223332 235899999999988 4455554443
No 46
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=33.56 E-value=4.1e+02 Score=30.44 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=64.3
Q ss_pred CCCCCCcEEEEEEecCCCHH----HHHHHHHHHc---CCCCeEEEEEcCCCChh----HHHHHHhhhcCCCcccccCCeE
Q 013052 99 ARTEPPRLAYLISGTKGDSH----RMMRTLQAVY---HPRNHYILHLDLEAPPR----ERLDLALSVKNDPIFFEVENVR 167 (450)
Q Consensus 99 ~~~~p~kiAYLI~~hk~d~~----~l~RLL~aLy---hP~n~y~IHlD~ks~~~----~~~~L~~~v~~~~~~~~~~NV~ 167 (450)
+.+..++.+.+|-+|+.|++ .++..++.+. .+++..++=+|-.+++. +.+.+....+.. ...++|+
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~---~~~~~i~ 195 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAEL---GGEGRIF 195 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhc---CCCCcEE
Confidence 34566899999999997765 4555555543 34444445555444432 222222222211 1245777
Q ss_pred EecccceeeecCccHHHHHHHHHHHHHh-cCCCCceEEeccCCcccccc-hhHHHHHhcccCCCCceee
Q 013052 168 VMLQSNLVTYKGPTMIACTLQAIAILLK-ESLEWDWFINLSASDYPLVT-QDDMLYVFSNMSKNLNFIE 234 (450)
Q Consensus 168 vv~kr~~V~Wgg~S~V~AtL~~~a~LL~-~~~~wdyfinLSgsDyPLkt-~ddi~~~ls~~~r~~NFIe 234 (450)
+...... .|.. .- + +..+++ ...++||++.|.++..|-.. ...+...+... .+.-.|.
T Consensus 196 yr~R~~n---~~~K-aG---N-l~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~d-P~vGlVQ 255 (691)
T PRK05454 196 YRRRRRN---VGRK-AG---N-IADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEAN-PRAGLIQ 255 (691)
T ss_pred EEECCcC---CCcc-HH---H-HHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhC-cCEEEEe
Confidence 7543222 2221 11 1 112233 24679999999999887543 34455555432 2445554
No 47
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.49 E-value=3.5e+02 Score=24.18 Aligned_cols=98 Identities=10% Similarity=0.042 Sum_probs=54.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCChhHHHHHHhhhcCCCccccc-CCeEEecccceeeecCccHHH
Q 013052 108 YLISGTKGDSHRMMRTLQAVYHPR--NHYILHLDLEAPPRERLDLALSVKNDPIFFEV-ENVRVMLQSNLVTYKGPTMIA 184 (450)
Q Consensus 108 YLI~~hk~d~~~l~RLL~aLyhP~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~-~NV~vv~kr~~V~Wgg~S~V~ 184 (450)
.+|-+++ ..+.|.+.|+.+.... ..=+|=+|-.+++...+.++.+.+ .. .++.++.. -++.+...
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~------~~~~~~~~~~~-----~~~~G~~~ 69 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID------KDPFIIILIRN-----GKNLGVAR 69 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh------cCCceEEEEeC-----CCCccHHH
Confidence 3566776 5688999998886421 233555666666655555554432 22 23443322 23334444
Q ss_pred HHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 185 CTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 185 AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
+.-.+ ++ ..+.+|+++|.+.|+.. .+.|.+.+.
T Consensus 70 ~~n~g----~~-~~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 70 NFESL----LQ-AADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHHH----HH-hCCCCEEEEECCCcccC--hhHHHHHHH
Confidence 43333 22 24579999999999875 444544443
No 48
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=31.52 E-value=4.5e+02 Score=24.84 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCC-ChhHHHHHHhhhcCCCcccccCCeEEecccceeee--cCcc--HHHH---HHH
Q 013052 117 SHRMMRTLQAVYHPRNHYILHLDLEA-PPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTY--KGPT--MIAC---TLQ 188 (450)
Q Consensus 117 ~~~l~RLL~aLyhP~n~y~IHlD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~W--gg~S--~V~A---tL~ 188 (450)
...+-..++|+=|....++|..=+.. ...|...+. ..+||.+..-.....| .... ..++ .+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 45788889999999999999998865 345554443 3456766542222222 2222 2222 223
Q ss_pred HHHHHHhcCCCCceEEe---ccCCcccccchhHHHHHhcccCCCCcee
Q 013052 189 AIAILLKESLEWDWFIN---LSASDYPLVTQDDMLYVFSNMSKNLNFI 233 (450)
Q Consensus 189 ~~a~LL~~~~~wdyfin---LSgsDyPLkt~ddi~~~ls~~~r~~NFI 233 (450)
-++.++. ..+||-+|+ +.+-+|=|.+-+++.+++...|.+.+-|
T Consensus 106 ~a~~~l~-~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVD-EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 3333343 578999986 6778888999999999998877776666
No 49
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=30.92 E-value=2.9e+02 Score=22.39 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=48.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYHPR--NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACT 186 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyhP~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~At 186 (450)
+|.+++ ..+.+..+++++..-. +.-++-+|-.+++.....+....+. ..++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEE-----EecCCCChHHHH
Confidence 455655 6789999999886443 4445557776665544444433210 1122211 223333444444
Q ss_pred HHHHHHHHhcCCCCceEEeccCCccccc
Q 013052 187 LQAIAILLKESLEWDWFINLSASDYPLV 214 (450)
Q Consensus 187 L~~~a~LL~~~~~wdyfinLSgsDyPLk 214 (450)
-.+++.+ +.||++.+.+.+.+-.
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~ 92 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLP 92 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCc
Confidence 4344443 4789999988877544
No 50
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=30.74 E-value=1.9e+02 Score=28.82 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=54.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCe--E-EEEEc-CCCChhHHHHHHhhhcCCCcccccCCeEEec-------ccce--
Q 013052 108 YLISGTKGDSHRMMRTLQAVYHPRNH--Y-ILHLD-LEAPPRERLDLALSVKNDPIFFEVENVRVML-------QSNL-- 174 (450)
Q Consensus 108 YLI~~hk~d~~~l~RLL~aLyhP~n~--y-~IHlD-~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~-------kr~~-- 174 (450)
.+|+++.....+..++|+.|.+=+|. | ++|-. .+-+...+++|.. ..+|.++. +...
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 56777665677777888888776663 2 33332 3445555555543 12222221 1111
Q ss_pred eeecCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHH
Q 013052 175 VTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDM 219 (450)
Q Consensus 175 V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi 219 (450)
+...|+. +..+|.+. ..++-+++|.+..+|+++.+.+
T Consensus 74 ~~~~~~~-----~K~lA~l~---ssFeevllLDaD~vpl~~p~~l 110 (271)
T PF11051_consen 74 FSKKGFQ-----NKWLALLF---SSFEEVLLLDADNVPLVDPEKL 110 (271)
T ss_pred cccCCch-----hhhhhhhh---CCcceEEEEcCCcccccCHHHH
Confidence 1111332 33444443 4688999999999999999887
No 51
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.00 E-value=4.2e+02 Score=23.97 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=52.7
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHH
Q 013052 109 LISGTKGDSHRMMRTLQAVY---HPR--NHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMI 183 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLy---hP~--n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V 183 (450)
+|.+++ +.+.++++|++|. +|. ..++|--|. +++...+.++ +.. ....++|.++.... ...+|. .
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~eiivvdd~-s~d~t~~~~~-~~~----~~~~~~v~~~~~~~-~~~~g~--~ 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEVILVDDH-STDGTVQILE-FAA----AKPNFQLKILNNSR-VSISGK--K 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEEEEEcCC-CCcChHHHHH-HHH----hCCCcceEEeeccC-cccchh--H
Confidence 455655 7889999999884 344 455555554 4433333332 111 12345777665332 112222 2
Q ss_pred HHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 184 ACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 184 ~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
.|-- .+++. ..-||++++.+.|.+ ..+.|...+.
T Consensus 72 ~a~n----~g~~~-~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NALT----TAIKA-AKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HHHH----HHHHH-hcCCEEEEECCCccc--CHHHHHHHHH
Confidence 2222 22222 235999999999977 4556655554
No 52
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=29.54 E-value=3.7e+02 Score=25.94 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=57.4
Q ss_pred EEEEEEecCC-CHHHHHHHHHHHc--CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccH
Q 013052 106 LAYLISGTKG-DSHRMMRTLQAVY--HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTM 182 (450)
Q Consensus 106 iAYLI~~hk~-d~~~l~RLL~aLy--hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~ 182 (450)
.||+-++... -...+.-++..|- +++..++|+++...+.+.++.|++.. ...-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcchhhhccchH
Confidence 3777776541 2345555555553 45667788888877777777776531 1111111122111110011122
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHH
Q 013052 183 IACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLY 221 (450)
Q Consensus 183 V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~ 221 (450)
..++.. +..+-.-.++|.++.|.+.-+.+.+.++|.+
T Consensus 75 ~~~~~~--kl~~~~l~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 75 FKDTYT--KLRLWNLTEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHHhH--HHHhccccccceEEEEeCCeeEccCHHHHhC
Confidence 222221 1111111479999999999999999999844
No 53
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.34 E-value=3.5e+02 Score=22.86 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=51.8
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.+.++++.|.. +...++| +|-.+.+...+.+... ..++.++.... .. +...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~---------~~~~~~~~~~~--~~---g~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLREL---------FPEVRLIRNGE--NL---GFGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHh---------CCCeEEEecCC--Cc---ChHHH
Confidence 456666 68899999999953 3345666 5545555544444432 22566654321 12 22333
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHh
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVF 223 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~l 223 (450)
--.+++.+ +.+|++.+.+.+++- .+.+....
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC--ccHHHHHH
Confidence 33333332 579999999988874 34444433
No 54
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.19 E-value=32 Score=28.12 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=16.1
Q ss_pred ccCCcccccchhHHHHHhc
Q 013052 206 LSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 206 LSgsDyPLkt~ddi~~~ls 224 (450)
+-|.|||++++.+|...|-
T Consensus 16 ~k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 16 LKGADFPINNPEELVAALP 34 (80)
T ss_pred HccCCCCCCCHHHHHHhcc
Confidence 3478999999999998773
No 55
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=28.81 E-value=3.1e+02 Score=28.31 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCcEEEEEEecCCCHH-------------------------HHHHHHHHHcCCCCeEEEEEcCC-C--ChhHHHHHHhhh
Q 013052 103 PPRLAYLISGTKGDSH-------------------------RMMRTLQAVYHPRNHYILHLDLE-A--PPRERLDLALSV 154 (450)
Q Consensus 103 p~kiAYLI~~hk~d~~-------------------------~l~RLL~aLyhP~n~y~IHlD~k-s--~~~~~~~L~~~v 154 (450)
.+.||||+.|-.|-+. .-.|++.+-.|||-.++- -+.+ . +.++-.++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-PEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-cccccccCCHHHHHHHHHHH
Confidence 4778999987766322 123555566788754432 2321 2 344444454443
Q ss_pred cCCCcccccCCeEEecccceeeecCccHHHHHHHHHHHHHhcCCCCceEEeccCC
Q 013052 155 KNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSAS 209 (450)
Q Consensus 155 ~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgs 209 (450)
...+ ....-.|.++.. --.|-.+.-+++=-.|++.++.-+||+++.+
T Consensus 101 ~~~~-~~g~~kV~iI~~-------ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 101 YEHA-RLGGAKVVWLPD-------AALLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred hhcc-ccCCceEEEEcc-------hHhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3222 111223444443 3355555555555566778888999999865
No 56
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=28.66 E-value=4.6e+02 Score=26.46 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=20.3
Q ss_pred eecCccHHHHHHHHHHHHHhcCCCCceEEeccCC
Q 013052 176 TYKGPTMIACTLQAIAILLKESLEWDWFINLSAS 209 (450)
Q Consensus 176 ~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgs 209 (450)
-++.-.|-.+.-+++=-.|++.++.-+|++++.+
T Consensus 95 I~~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 95 IYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred EechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 3444444444444444455667788888888865
No 57
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=28.64 E-value=3.5e+02 Score=25.37 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCC-CChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCcc-H--HHHHHHHHHHH
Q 013052 118 HRMMRTLQAVYHPRNHYILHLDLE-APPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPT-M--IACTLQAIAIL 193 (450)
Q Consensus 118 ~~l~RLL~aLyhP~n~y~IHlD~k-s~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S-~--V~AtL~~~a~L 193 (450)
..+--.++|+=|....+++..=+. ....|...+ ...+||.+..-.....|..-. . .++.-++++.+
T Consensus 19 AAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----------~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~a 88 (172)
T PF02572_consen 19 AALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----------KKLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEEA 88 (172)
T ss_dssp HHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----------GGGT--EEEE--TT----GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----------HhCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHHH
Confidence 467778899999999999999887 334555444 346777765544445555432 2 23333344333
Q ss_pred Hhc--CCCCceEEe---ccCCcccccchhHHHHHhcccCCCCcee
Q 013052 194 LKE--SLEWDWFIN---LSASDYPLVTQDDMLYVFSNMSKNLNFI 233 (450)
Q Consensus 194 L~~--~~~wdyfin---LSgsDyPLkt~ddi~~~ls~~~r~~NFI 233 (450)
.+. +..||-+|+ +-+-++=|.+.+++.+++...|...+-|
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 332 578999997 6677888899999999998777666665
No 58
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=28.61 E-value=3.5e+02 Score=22.56 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYHP---RNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyhP---~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.+.++|+.|... ...++| +|-.+++...+.+...... ...++.++.. ....| ...|
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iiv-vdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~---~~~~g--~~~~ 69 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIV-VDDGSTDDTLEILEELAAL-----YIRRVLVVRD---KENGG--KAGA 69 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEE-EeCCCccchHHHHHHHhcc-----ccceEEEEEe---cccCC--chHH
Confidence 455666 678999999988643 345555 4555554444444432111 0123433321 11222 2233
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHH
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYV 222 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ 222 (450)
--.+++.+ .-||++++.+.|++ +.+.|...
T Consensus 70 ~n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 70 LNAGLRHA-----KGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHHHhc-----CCCEEEEECCCCCc--ChHHHHHH
Confidence 33333332 56899999999987 44555544
No 59
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=28.35 E-value=4.2e+02 Score=27.02 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=16.4
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHHc
Q 013052 103 PPRLAYLISGTKGDS--HRMMRTLQAVY 128 (450)
Q Consensus 103 p~kiAYLI~~hk~d~--~~l~RLL~aLy 128 (450)
.+.+|||+.|..|-+ .....+.+++.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 477899999887643 23344555554
No 60
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=28.16 E-value=3.9e+02 Score=23.00 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHc--CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEe
Q 013052 116 DSHRMMRTLQAVY--HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVM 169 (450)
Q Consensus 116 d~~~l~RLL~aLy--hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv 169 (450)
+.+++...++.+. +|+..++|..|++++.+.-..+...++. ..+.+|.++
T Consensus 68 ~~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~----aG~~~v~l~ 119 (122)
T TIGR02803 68 ARETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQ----AGYLKIGLV 119 (122)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHH----cCCCEEEEE
Confidence 3467777776654 6888999999999988776666555442 234456554
No 61
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=28.03 E-value=4.3e+02 Score=23.99 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=52.7
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHHH
Q 013052 109 LISGTKGDSHRMMRTLQAVYHP---RNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIAC 185 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyhP---~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~A 185 (450)
+|.+++ ..+.+.++|+.|..- .+.=+|=||-.|++.-.+.++.+. ...++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~------~~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA------KEYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH------HhCCceEEEecC---CCCChH--HH
Confidence 466666 577888988888641 233355567666554433344332 234566655421 234433 23
Q ss_pred HHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 186 TLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 186 tL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
--.+++.+ . -||+++|.+.|.+ +.+.|...+.
T Consensus 70 ~n~g~~~a----~-gd~i~~lD~D~~~--~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKAA----R-GDVIVVMDADLSH--PPEYIPELLE 101 (224)
T ss_pred HHHHHHHc----C-CCEEEEEECCCCC--CHHHHHHHHH
Confidence 33344433 2 2899999998875 4554544443
No 62
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=27.68 E-value=3.7e+02 Score=23.11 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=60.8
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCC-CeEEEEEcCCCCh-hHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHH
Q 013052 106 LAYLISGTKGDSHRMMRTLQAVYHPR-NHYILHLDLEAPP-RERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMI 183 (450)
Q Consensus 106 iAYLI~~hk~d~~~l~RLL~aLyhP~-n~y~IHlD~ks~~-~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V 183 (450)
+.++|.+|.+=.+-+...++.+..+. +.+.|-+....+. ...+++.+.++.. ..-..|-|+.+ ...|.+..+
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~---~~~~~vivltD---l~GGSp~n~ 75 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADL---DTEEEVLFLVD---IFGGSPYNA 75 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhc---CCCCCEEEEEe---CCCCCHHHH
Confidence 35788888855667888888888654 4667777665554 4566677666532 23356776653 667777766
Q ss_pred HHHHHHHHHHHhcCCCCceEEeccCCccccc
Q 013052 184 ACTLQAIAILLKESLEWDWFINLSASDYPLV 214 (450)
Q Consensus 184 ~AtL~~~a~LL~~~~~wdyfinLSgsDyPLk 214 (450)
++.+ +.+ . .-+..+||--+|+.
T Consensus 76 a~~~-----~~~-~---~~~~vIsG~NLpml 97 (116)
T TIGR00824 76 AARI-----IVD-K---PHMDVIAGVNLPLL 97 (116)
T ss_pred HHHH-----Hhh-c---CCEEEEEecCHHHH
Confidence 5433 222 1 23679999999984
No 63
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=26.67 E-value=3.4e+02 Score=23.26 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=58.2
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCCC-CeEEEEEcCCCCh-hHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHHH
Q 013052 107 AYLISGTKGDSHRMMRTLQAVYHPR-NHYILHLDLEAPP-RERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIA 184 (450)
Q Consensus 107 AYLI~~hk~d~~~l~RLL~aLyhP~-n~y~IHlD~ks~~-~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~ 184 (450)
-++|.+|..=.+-+...++.+...+ +.+.+-+....+. ...+++.+.++.. .....|-|+.+ ...|.+..+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~---~~~~~viil~D---l~GGSp~n~~ 75 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAEL---DSGEGVLILTD---LFGGSPNNAA 75 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCCcEEEEEe---CCCCCHHHHH
Confidence 3678888744668888999997655 6778888776554 3456666665432 22356666543 4455555443
Q ss_pred HHHHHHHHHHhcCCCCceEEeccCCccccc
Q 013052 185 CTLQAIAILLKESLEWDWFINLSASDYPLV 214 (450)
Q Consensus 185 AtL~~~a~LL~~~~~wdyfinLSgsDyPLk 214 (450)
..+ +... .-+..++|-+.|+.
T Consensus 76 ~~~------~~~~---~~~~visG~nlpml 96 (122)
T cd00006 76 ARL------SMEH---PPVEVIAGVNLPML 96 (122)
T ss_pred HHH------HhcC---CCEEEEEccCHHHH
Confidence 332 2211 34678999999984
No 64
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=24.67 E-value=5.6e+02 Score=24.80 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=62.7
Q ss_pred EEEEEEecCCCHHHHHHHHHHH---cCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccH
Q 013052 106 LAYLISGTKGDSHRMMRTLQAV---YHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTM 182 (450)
Q Consensus 106 iAYLI~~hk~d~~~l~RLL~aL---yhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~ 182 (450)
.-++++|+.|-...+.||++++ |.|+.++ +--+.+.+. +..+.+....+ -....|..+...| .|.=.=.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~---~k~~~F~~~~a-~~~a~~~~ipRsR-eVgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSE---QKARSFELSLA-HCKAKNYEIPRSR-EVGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhH---HHHHhhhcccc-ccchhheecchhh-hhhhhhhhh
Confidence 4688888888888899999887 5566655 222222222 22222221111 1223455544333 354333466
Q ss_pred HHHHHHHHHHHHhc--CCCCceEEecc-CCcccccchhHHHHHhc
Q 013052 183 IACTLQAIAILLKE--SLEWDWFINLS-ASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 183 V~AtL~~~a~LL~~--~~~wdyfinLS-gsDyPLkt~ddi~~~ls 224 (450)
|-.|++++...+.. ...-|-+...- |.|.|+-=-..|.+++.
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 66677666555432 12345555555 79999987777777764
No 65
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=23.98 E-value=3.9e+02 Score=24.37 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=51.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC------CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCC-eEEecccceeeecCcc
Q 013052 109 LISGTKGDSHRMMRTLQAVYH------PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVEN-VRVMLQSNLVTYKGPT 181 (450)
Q Consensus 109 LI~~hk~d~~~l~RLL~aLyh------P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~N-V~vv~kr~~V~Wgg~S 181 (450)
+|.+++ ..+.+.++|+.+.. +.+.=+|-+|-.|++.-.+.++.+.+ ..++ |+++... ...|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~---~n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLP---KNRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEcc---cCCCcH
Confidence 345555 45556555555532 13444666888777665555554422 2333 3555422 123433
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhc
Q 013052 182 MIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFS 224 (450)
Q Consensus 182 ~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls 224 (450)
.|-..+++.+. -||++++.+.+. .+.+.|...+.
T Consensus 72 --~a~~~g~~~a~-----gd~i~~ld~D~~--~~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAAR-----GDYILFADADLA--TPFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHhc-----CCEEEEEeCCCC--CCHHHHHHHHH
Confidence 34444444442 289999999887 34555555444
No 66
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.98 E-value=6.7e+02 Score=23.95 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCC-ChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCc------cHHHHHHHHH
Q 013052 118 HRMMRTLQAVYHPRNHYILHLDLEA-PPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGP------TMIACTLQAI 190 (450)
Q Consensus 118 ~~l~RLL~aLyhP~n~y~IHlD~ks-~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~------S~V~AtL~~~ 190 (450)
..+-.-++|+-+.....+|..=+.. ...|...|+ ..+||.+..-.....|..- -..+..+.-+
T Consensus 38 ~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a 107 (191)
T PRK05986 38 AAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEA 107 (191)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHH
Confidence 4677788888888899999998865 445655543 2457777653333344331 2223334444
Q ss_pred HHHHhcCCCCceEEe---ccCCcccccchhHHHHHhcccCCCCcee
Q 013052 191 AILLKESLEWDWFIN---LSASDYPLVTQDDMLYVFSNMSKNLNFI 233 (450)
Q Consensus 191 a~LL~~~~~wdyfin---LSgsDyPLkt~ddi~~~ls~~~r~~NFI 233 (450)
+.++. +.+||-+|+ +-+-+|=|.+.+++.+++...|.+.+-|
T Consensus 108 ~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 108 KRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 44444 578999986 6778889999999999998877776665
No 67
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=22.19 E-value=5.6e+02 Score=22.78 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=47.0
Q ss_pred EEEEecCCC-HHHHHHHHHHHcC---CCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHH
Q 013052 108 YLISGTKGD-SHRMMRTLQAVYH---PRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMI 183 (450)
Q Consensus 108 YLI~~hk~d-~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V 183 (450)
.+|-+++++ .+.+.++|+++.. ++..++|=.|..+++.-.+.+..+.+ .. ++.++..... .|. .
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~------~~-~i~~i~~~~n---~G~--~ 69 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR------KL-PLKVVPLEKN---RGL--G 69 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh------cC-CeEEEEcCcc---ccH--H
Confidence 356666543 4689999999863 43455444454444443333333321 22 3665542211 222 2
Q ss_pred HHHHHHHHHHHhcCCCCceEEeccCCccccc
Q 013052 184 ACTLQAIAILLKESLEWDWFINLSASDYPLV 214 (450)
Q Consensus 184 ~AtL~~~a~LL~~~~~wdyfinLSgsDyPLk 214 (450)
.|--.|++. .+-||++++.+.|++..
T Consensus 70 ~a~N~g~~~-----a~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 70 KALNEGLKH-----CTYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHHHHHh-----cCCCEEEEeCCccccCc
Confidence 232223322 24689999999998653
No 68
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=21.03 E-value=6.8e+02 Score=25.68 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCcEEEEEEecCCCHH--HHHHHHHHH-----------------------cCCCCeEEEEEcCC--CChhHHHHHHhhhc
Q 013052 103 PPRLAYLISGTKGDSH--RMMRTLQAV-----------------------YHPRNHYILHLDLE--APPRERLDLALSVK 155 (450)
Q Consensus 103 p~kiAYLI~~hk~d~~--~l~RLL~aL-----------------------yhP~n~y~IHlD~k--s~~~~~~~L~~~v~ 155 (450)
.+.+|||+.|..|-+. ....+.++| .||+..++-.-+++ -+.++-.++...+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 4678999998776432 223333333 36665544443322 13333333443332
Q ss_pred CCCcccccCCeEEecccceeeecCccHHHHHHHHHHHHHhcCCCCceEEeccCC
Q 013052 156 NDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSAS 209 (450)
Q Consensus 156 ~~~~~~~~~NV~vv~kr~~V~Wgg~S~V~AtL~~~a~LL~~~~~wdyfinLSgs 209 (450)
..+. .....|.++...+. |-.+.-+++-..|++.++.-+||+++.+
T Consensus 100 ~~~~-~~~~kv~iI~~a~~-------m~~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 100 QTAQ-LGGRKVVLIEPAEA-------MNRNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred hccc-cCCCeEEEECChhh-------CCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 2221 12345555554432 2233333333445556667778877754
No 69
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=20.86 E-value=6.6e+02 Score=23.10 Aligned_cols=104 Identities=10% Similarity=0.018 Sum_probs=54.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCChhH-HHHHHhhhcCCCcccccCCeEEecccceeeecCccHH
Q 013052 108 YLISGTKGDSHRMMRTLQAVYH---PRNHYILHLDLEAPPRE-RLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMI 183 (450)
Q Consensus 108 YLI~~hk~d~~~l~RLL~aLyh---P~n~y~IHlD~ks~~~~-~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V 183 (450)
.+|-+|+.+++.|.++|+.|.. |+.. +|=+|-.+++.. .+.++.+.+. ...++.++.... ..|+ ..
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~e-iiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~--~~ 71 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFE-VIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGA--KA 71 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCC--ch
Confidence 3566777545789999888853 3333 455565554432 2333333221 123566654221 2343 11
Q ss_pred HHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhccc
Q 013052 184 ACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNM 226 (450)
Q Consensus 184 ~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~ 226 (450)
.|.-.+++.+ ..+.||++.+-+.+. .+.+.|.+.+...
T Consensus 72 ~a~n~g~~~a---~~~~d~i~~lD~D~~--~~~~~l~~l~~~~ 109 (236)
T cd06435 72 GALNYALERT---APDAEIIAVIDADYQ--VEPDWLKRLVPIF 109 (236)
T ss_pred HHHHHHHHhc---CCCCCEEEEEcCCCC--cCHHHHHHHHHHh
Confidence 2222233332 134799999998886 4667776665443
Done!