Query 013053
Match_columns 450
No_of_seqs 117 out of 238
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 23:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2291 Oligosaccharyltransfer 100.0 1E-128 2E-133 995.3 35.8 412 21-447 23-436 (602)
2 PF04597 Ribophorin_I: Ribopho 100.0 1E-122 2E-127 967.0 46.6 404 28-447 1-411 (432)
3 PF08487 VIT: Vault protein in 93.9 0.86 1.9E-05 39.7 10.8 101 29-135 3-117 (118)
4 smart00609 VIT Vault protein I 90.1 8.1 0.00018 34.5 12.6 105 26-135 12-129 (130)
5 TIGR03788 marine_srt_targ mari 75.5 10 0.00022 42.0 8.2 92 37-135 6-111 (596)
6 TIGR03079 CH4_NH3mon_ox_B meth 64.9 31 0.00067 36.2 8.3 21 115-135 333-353 (399)
7 PF09972 DUF2207: Predicted me 62.1 2.1E+02 0.0046 30.1 17.9 182 228-428 4-188 (511)
8 PF10989 DUF2808: Protein of u 59.1 88 0.0019 28.3 9.5 27 111-137 88-114 (146)
9 PF06483 ChiC: Chitinase C; I 54.8 93 0.002 29.6 8.9 82 45-137 52-143 (180)
10 PF09972 DUF2207: Predicted me 53.5 2.9E+02 0.0064 29.0 19.8 128 30-179 3-141 (511)
11 PF05753 TRAP_beta: Translocon 47.6 73 0.0016 30.1 7.2 21 46-66 39-59 (181)
12 PF15240 Pro-rich: Proline-ric 44.9 12 0.00026 35.4 1.5 28 8-35 1-29 (179)
13 PF07610 DUF1573: Protein of u 42.3 35 0.00076 24.6 3.3 21 114-134 24-45 (45)
14 PF04744 Monooxygenase_B: Mono 41.2 1.8E+02 0.0038 30.8 9.3 116 35-178 255-374 (381)
15 PF08441 Integrin_alpha2: Inte 39.4 4.9E+02 0.011 27.5 17.2 86 38-138 185-271 (457)
16 PF04314 DUF461: Protein of un 38.6 1.8E+02 0.0039 24.9 7.7 82 49-134 18-101 (110)
17 PF09478 CBM49: Carbohydrate b 36.0 2.3E+02 0.005 22.8 7.8 25 45-69 17-41 (80)
18 TIGR02411 leuko_A4_hydro leuko 32.1 7.6E+02 0.017 27.6 14.2 91 30-137 14-104 (601)
19 PF13757 VIT_2: Vault protein 31.5 2.9E+02 0.0064 22.7 8.4 55 29-85 12-67 (78)
20 PF02102 Peptidase_M35: Deuter 31.3 16 0.00034 38.3 0.0 22 121-142 101-122 (359)
21 PRK09918 putative fimbrial cha 28.1 1.2E+02 0.0025 29.7 5.4 50 7-60 4-53 (230)
22 PF01433 Peptidase_M1: Peptida 28.0 6.5E+02 0.014 25.5 11.4 84 38-136 17-100 (390)
23 cd00916 Npc2_like Niemann-Pick 25.9 3.8E+02 0.0081 23.4 7.8 65 114-179 34-109 (123)
24 PF12969 DUF3857: Domain of Un 24.2 5.1E+02 0.011 23.0 13.6 135 37-186 1-142 (177)
25 PRK13839 conjugal transfer pro 23.8 7.3E+02 0.016 25.2 10.3 54 389-448 203-262 (277)
26 TIGR01451 B_ant_repeat conserv 22.4 2E+02 0.0044 21.4 4.6 35 46-82 13-47 (53)
27 PF13141 DUF3979: Protein of u 22.4 78 0.0017 27.0 2.5 89 325-444 13-102 (114)
28 PRK11901 hypothetical protein; 21.0 70 0.0015 33.1 2.4 11 34-44 75-85 (327)
29 PRK10905 cell division protein 20.6 51 0.0011 34.0 1.3 37 7-43 1-43 (328)
30 PF07172 GRP: Glycine rich pro 20.5 51 0.0011 28.0 1.1 13 12-24 11-23 (95)
31 PHA02090 hypothetical protein 20.1 50 0.0011 26.2 0.9 20 315-338 41-61 (79)
No 1
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-128 Score=995.34 Aligned_cols=412 Identities=50% Similarity=0.810 Sum_probs=392.4
Q ss_pred ccCccCCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCcccccccccccee
Q 013053 21 FASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVE 100 (450)
Q Consensus 21 ~~~~~~~~~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~ 100 (450)
|++.+.++|+|.|++|||||++++||++++++++|+|++|+++|.++++..+..+||+++|...+++++ +...+++.
T Consensus 23 ~a~~a~~~w~n~nv~RTIDlsS~ivK~tt~l~i~N~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~---~~l~~s~~ 99 (602)
T KOG2291|consen 23 AASSAEQDWVNVNVERTIDLSSQIVKVTTELSIENIGSEPATEYLLAFEKELGASLAFLSVAFTEGKKK---TLLKLSVN 99 (602)
T ss_pred cccCCccccccccceEEEehhhhhhhheeEEEEEecCCCchheEEEeccCccccceeEEEEeeccCccc---cccccccC
Confidence 367778999999999999999999999999999999999999999999999999999999988777654 23456666
Q ss_pred eecCCCCCCcceEEEEEcCCcCCCCCeEEEEEEEEecccccccCcccccCcceEEEEEecceeeCcceeeEEEEEEEecC
Q 013053 101 NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPE 180 (450)
Q Consensus 101 ~~~~~~~~~~~~~~~I~Lp~pl~p~~~v~l~v~~~~~~~l~P~P~~I~q~e~Q~l~f~~n~y~~SpY~t~~q~t~v~l~s 180 (450)
+.+.++.++ ++|.|+||.||.||++++|.|++++++.++|+|++|+|+|+|+|+|.+|+|++|||.|++|+|+|++||
T Consensus 100 ~~~~~~~~~--~~y~v~lp~pl~pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~~SpY~Tk~Q~t~ikl~S 177 (602)
T KOG2291|consen 100 PPKKDGASE--RVYTVTLPNPLSPGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYLLSPYDTKSQSTTIKLPS 177 (602)
T ss_pred CcccCCCcc--ceEEEeCCCCCCCCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccccCcccccceeEEEEccc
Confidence 666554322 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccCCceeecCeEEecccccCCCCCccCEEEEEEeccceeEEEEEEEEEEEeeceEEEEEEEEEEEEcCCCCCC
Q 013053 181 SRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKG 260 (450)
Q Consensus 181 ~~i~s~t~~~~~~~~~~~i~YGP~~~v~p~s~~~i~vhye~n~P~~~v~~L~R~IeVSHWGnI~vEE~y~l~N~GA~Lkg 260 (450)
++|++||+.++.+++|+.++||||+|+|+|+.+|+.||||||.||+++++|+|+|||||||||+|||+|+|+|+||+|||
T Consensus 178 s~ies~T~~~~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~gAkLkg 257 (602)
T KOG2291|consen 178 SKIESYTTVEPSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKGAKLKG 257 (602)
T ss_pred ccceeccccCcccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhccCcCccccceeeEeeeccCCcccCeEEEeccceeeeeeeecCCCeeEEEEcccCcccCCcceeEEEeecCCc
Q 013053 261 EFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPL 340 (450)
Q Consensus 261 ~FSR~d~~~~~~~~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~~r~~~~~~~l~l~PRfPLfGGWk~~FtiGyn~pl 340 (450)
+|||+|||++...++.++++++.+.||++|+|+||||+||||||||+|.+.++++|+|+|||||||||||+|++|||+|+
T Consensus 258 ~FSR~d~q~~~~~~g~sai~~l~~~LP~~A~dvYYrDeiGNISTShmr~~~~~~eleirPRfPlFGGWkt~ftiGy~lP~ 337 (602)
T KOG2291|consen 258 PFSRLDYQKQRRTRGASAINSLKTVLPARAKDVYYRDEIGNISTSHMRIDPDKTELEIRPRFPLFGGWKTNFTIGYNLPL 337 (602)
T ss_pred CcchHhhhhcCCcCcchHHHHHHhhCCCccCceeeecccCcEehhhhcccCccceEEeccCCccccCceeeEEEecCCcH
Confidence 99999999997668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEecCCeEEEEEeecC-CCCceEEEEEEEEEEcCCCCccceeeCCccee-eeceeEEEeccCCCCcEEEEEecCCCc
Q 013053 341 KDFLFELEGNRFLNITFGS-PMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVP 418 (450)
Q Consensus 341 ~~~L~~~~~~yiL~vp~~~-~~~d~~~d~~~l~IiLPEGA~~i~v~~P~~v~-~~~~~~~tyLDt~GRpvv~l~~~Nlv~ 418 (450)
++||++.|++|.|+++|.. ++++++||+++++|+|||||+||++.+||+++ .++++++|||||.||||++++++|+++
T Consensus 338 ~eyl~~~g~ry~L~~~~~~~~~d~~V~dkl~ikvvLPEGak~i~i~tP~~is~~p~e~~~syLDt~GR~Vvv~ek~Nvv~ 417 (602)
T KOG2291|consen 338 EEYLFSKGRRYALKIILIDHIFDDTVYDKLTIKVVLPEGAKDIEIDTPYEISRSPIELKYSYLDTNGRPVVVLEKNNVVP 417 (602)
T ss_pred HHHhhccCceeEEccccccCCCccceeeeEEEEEEccCCCcccccccceeeccCchhhhhhhhhccCcEEEEEEccccCC
Confidence 9999998999999999955 68888999999999999999999999999999 679999999999999999999999999
Q ss_pred CCcceEEEEeeccccCcccccccccccce
Q 013053 419 EHNQFFQLIWQDCSGMKFKQQFNKLKMLS 447 (450)
Q Consensus 419 ~h~~~~~v~Y~~~~~~~~~~~~~~~~~l~ 447 (450)
.|+++|+|+| +|++..||+
T Consensus 418 ~h~~~i~v~Y----------~f~~~sml~ 436 (602)
T KOG2291|consen 418 DHNQDIVVHY----------TFSKSSMLQ 436 (602)
T ss_pred CCCccEEEEE----------EechhHhhh
Confidence 9999999999 999999997
No 2
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=1.2e-122 Score=966.97 Aligned_cols=404 Identities=45% Similarity=0.761 Sum_probs=378.9
Q ss_pred ceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecCCCC
Q 013053 28 DLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGM 107 (450)
Q Consensus 28 ~~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~~~~ 107 (450)
.|+|+++.|+|||+++||||+++++++|+|++|+++|+|++|.++++++|+++|.+.+++.+... ..+..+.. .
T Consensus 1 ~~~n~~~~R~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~-----~~~~~~~~-~ 74 (432)
T PF04597_consen 1 VWENTNVERTIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKV-----SKEITEVN-S 74 (432)
T ss_pred CeEEeeEEEEEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCcccccc-----cccccccc-C
Confidence 48999999999999999999999999999999999999999999999999999999765443311 11212221 1
Q ss_pred CCcceEEEEEcCCcCCCCCeEEEEEEEEecccccccCcccccCcceEEEEEecceeeCcceeeEEEEEEEecCCCcceee
Q 013053 108 PAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYT 187 (450)
Q Consensus 108 ~~~~~~~~I~Lp~pl~p~~~v~l~v~~~~~~~l~P~P~~I~q~e~Q~l~f~~n~y~~SpY~t~~q~t~v~l~s~~i~s~t 187 (450)
..+..+|+|+||.||+||++++|.|+|++++++.|+|++|+|+|+|+|+|++|+|++|||+|++|+|+|++|++++++||
T Consensus 75 ~~~~~~~~i~L~~pl~~~~~~~l~v~~~~~~~~~P~P~~I~q~e~Q~v~~~~~~~~~SpY~t~~q~t~i~~~~~~i~s~t 154 (432)
T PF04597_consen 75 GSEIKYYEITLPKPLAPGEKVTLTVEYVLTHALKPYPAEITQGEKQLVLFTGNAYPLSPYPTKKQKTKIKLPSSKIESYT 154 (432)
T ss_pred CCCcceEEEECCCCCCCCCEEEEEEEEEecccceEcCCcccCCCceEEEEEcCEEecCCccccEEEEEEEecCCceeccc
Confidence 23457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC---CceeecCeEEecccccCCCCCccCEEEEEEeccceeEEEEEEEEEEEeeceEEEEEEEEEEEEcCCCCCCCcch
Q 013053 188 KLE---NTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSR 264 (450)
Q Consensus 188 ~~~---~~~~~~~~i~YGP~~~v~p~s~~~i~vhye~n~P~~~v~~L~R~IeVSHWGnI~vEE~y~l~N~GA~Lkg~FSR 264 (450)
+.. +.+++|++|+||||+|++||+.+++.||||||.||++|++|+|+|||||||||+|||+|+|+|+||+|||+|||
T Consensus 155 ~~~~~~~~~~~~~~i~yGP~~~v~p~~~~~~~vhye~n~P~~~v~~l~R~IeVSHWgni~veE~y~l~N~GA~Lkg~FSR 234 (432)
T PF04597_consen 155 KVEFEKPPKKKGNTITYGPYENVPPFSSQPLSVHYENNAPFLTVTSLERDIEVSHWGNIAVEEYYELRNDGAKLKGGFSR 234 (432)
T ss_pred CccccCCceecCCeEEeccccccCCCCcccEEEEEECCCCceEEEEEEEEEEEcCCccEEEEEEEEEEEcCcccCCCcCH
Confidence 998 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcCc-cccceeeEeeeccCCcccCeEEEeccceeeeeeeecCCCeeEEEEcccCcccCCcceeEEEeecCCcccc
Q 013053 265 LDYQARPTI-RGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDF 343 (450)
Q Consensus 265 ~d~~~~~~~-~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~~r~~~~~~~l~l~PRfPLfGGWk~~FtiGyn~pl~~~ 343 (450)
+|||++++. ++++++++|+++||++|+|+||||+|||||||++|.+.++++|+|+|||||||||||+|++|||+|+++|
T Consensus 235 ~d~~~~~~~~~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~~~~~~~~~~l~l~PRfPLfGGWk~~FtiGyn~p~~~~ 314 (432)
T PF04597_consen 235 LDYQKSQNSNRGSSALKSLETILPASASDVYYRDEIGNISTSHVRPNKDSVELELKPRFPLFGGWKYNFTIGYNLPLSNF 314 (432)
T ss_pred HHHHhhccCCCcChhheEEeccCCCccCCeEEEcCCccEEEEEEEeCCCceEEEEEcCCcccCCcceeEEEEccCChHHh
Confidence 999999754 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCC-eEEEEEeecCCCCceEEEEEEEEEEcCCCCccceeeCCccee-eeceeEEEeccCCCCcEEEEEecCCCcCCc
Q 013053 344 LFELEG-NRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVPEHN 421 (450)
Q Consensus 344 L~~~~~-~yiL~vp~~~~~~d~~~d~~~l~IiLPEGA~~i~v~~P~~v~-~~~~~~~tyLDt~GRpvv~l~~~Nlv~~h~ 421 (450)
|+.+++ +|+|+|||++++.|++||+++++|+|||||+||+|.+|++++ .+++.++||||+.|||+|+++++||+|+|+
T Consensus 315 l~~~~~~~y~L~vp~~~~~~d~~~d~~~l~i~LPEGA~~i~v~~P~~~~~~~~~~~~tyLDt~GR~vv~l~~~nlvd~~~ 394 (432)
T PF04597_consen 315 LRKSGDGRYVLKVPFLPGIKDIVYDNVELRIILPEGAKNIKVSSPFPVDSVSVSTHKTYLDTTGRPVVVLEKKNLVDEHN 394 (432)
T ss_pred EEECCCCcEEEEEECcCCcCceEEEEEEEEEECCCCceeeeEeCCccceeeeccceeeeeeccCceEEEEEeccCCHhHC
Confidence 995444 999999999999999999999999999999999999999987 788999999999999999999999999998
Q ss_pred -ceEEEEeeccccCcccccccccccce
Q 013053 422 -QFFQLIWQDCSGMKFKQQFNKLKMLS 447 (450)
Q Consensus 422 -~~~~v~Y~~~~~~~~~~~~~~~~~l~ 447 (450)
++|+|+| +|+.++||+
T Consensus 395 ~~~~~v~Y----------~~~~~~~~~ 411 (432)
T PF04597_consen 395 DQDFQVTY----------TYPSSAMLR 411 (432)
T ss_pred CeeEEEEE----------EcCHHHHHH
Confidence 9999999 999999886
No 3
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=93.87 E-value=0.86 Score=39.73 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=61.9
Q ss_pred eEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEEecCCC------ccccccccc-----
Q 013053 29 LILSKVDRRIDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGK------GKVKSLSAS----- 96 (450)
Q Consensus 29 ~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p-~~~y~~~l~~~~~~~ls~isa~~~~~k------~k~~~~~~~----- 96 (450)
+....+.=...+...+.+.+++-++.|..+.+ .-.|.|.||.+ .-++-+++.+++.. +|.+.....
T Consensus 3 ~~l~s~~v~~~I~~~~a~t~v~q~f~N~~~~~~E~~y~fpLp~~--A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~~a~~ 80 (118)
T PF08487_consen 3 VPLKSVHVKVTIIDRFARTTVTQTFENPSSEPLEAVYSFPLPEG--AAISGFSMWIGGRTIEGEVKEKEEAKQEYEEAVA 80 (118)
T ss_pred ceEEEEEEEEEEEccEEEEEEEEEEECCCCCcEEEEEEeECCCC--eEEEEEEEEECCEEEEEEEecHHHHHHHHHHHHH
Confidence 34555566677889999999999999988877 55677888876 34555555553210 000000000
Q ss_pred --cceeeecCCCCCCcceEEEEEcCCcCCCCCeEEEEEEEE
Q 013053 97 --LPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAV 135 (450)
Q Consensus 97 --l~~~~~~~~~~~~~~~~~~I~Lp~pl~p~~~v~l~v~~~ 135 (450)
-+...++. ...+...|.+.+ ||.||+++++.+.|.
T Consensus 81 ~g~~a~lle~--~~~~~~~F~~~v--ni~p~~~v~i~l~Y~ 117 (118)
T PF08487_consen 81 QGKSAALLEQ--SDPNVEVFTVSV--NIPPNEEVTIELTYV 117 (118)
T ss_pred cCCCchhhcc--cCCCCcEEEEEE--EeCCCCEEEEEEEEE
Confidence 00000000 112345699999 899999999999985
No 4
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=90.08 E-value=8.1 Score=34.53 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=61.3
Q ss_pred CCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCC------Cccccccc-----
Q 013053 26 LSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEG------KGKVKSLS----- 94 (450)
Q Consensus 26 ~~~~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~------k~k~~~~~----- 94 (450)
...+-...+.=...+.+.+++.+++.+..|.++.+..-|||...++ ..-++.+...+++. ++|.+..+
T Consensus 12 ~~~~pL~s~~v~~~I~~~~a~t~vtq~f~N~~~~~~e~~~~~~lp~-~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~Ye~A 90 (130)
T smart00609 12 VNGVPLYSLKVNSKVTSRFAHTVVTSRVVNRAVPAQEVTFDVELPK-TAFISNFAMTIDGKTYVGEIKEKEVAQKQYEKA 90 (130)
T ss_pred CCccceEEEEEEEEEECCEEEEEEEEEEECCCCCceEEEEEcCCCC-CcEEEeEEEEECCEEEEEEEeeHHHHHHHHHHH
Confidence 4567777777888899999999999999999866666555543322 22333333333210 11110000
Q ss_pred --cccceeeecCCCCCCcceEEEEEcCCcCCCCCeEEEEEEEE
Q 013053 95 --ASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAV 135 (450)
Q Consensus 95 --~~l~~~~~~~~~~~~~~~~~~I~Lp~pl~p~~~v~l~v~~~ 135 (450)
..-...-++.. ..+...|.+.+ +|.||+++++.+.|.
T Consensus 91 ~~~G~~a~L~eq~--~~~~~~F~~~V--NIppg~~v~v~l~Y~ 129 (130)
T smart00609 91 VSQGKTAGLVRAS--GRSMEQFTVSV--NVAPGSKVTFELTYE 129 (130)
T ss_pred HHcCCCeEEEEec--CCccCcEEEEE--EeCCCCEEEEEEEEE
Confidence 00000011111 11124689999 899999999999885
No 5
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=75.48 E-value=10 Score=42.04 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=57.4
Q ss_pred EEEcCCCeEEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEEecCC------Cccccccc-------cccceeee
Q 013053 37 RIDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEG------KGKVKSLS-------ASLPVENV 102 (450)
Q Consensus 37 ~Idl~~~~vk~~~~i~ikN~g~~p-~~~y~~~l~~~~~~~ls~isa~~~~~------k~k~~~~~-------~~l~~~~~ 102 (450)
.+++++.+.+++++.+..|..+.+ .-.|.|.||.+ .-++-+++.+++. ++|.+..+ ..-+.--+
T Consensus 6 ~~~V~g~~A~v~v~q~f~N~~~~~~E~~y~fPLp~~--aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~G~~a~Ll 83 (596)
T TIGR03788 6 NITVTGLIARTEVTQTFRNPSQFWVEGRYVFPLPEN--AAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAEGKKAALV 83 (596)
T ss_pred EEEEEcceEEEEEEEEEECCCCCcEEEEEEeeCCCC--cEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHhccceeee
Confidence 567889999999999999999888 55677777765 3555566655321 01100000 00000000
Q ss_pred cCCCCCCcceEEEEEcCCcCCCCCeEEEEEEEE
Q 013053 103 KPNGMPAALTFYAVKLPKALGKGDSYTFDVLAV 135 (450)
Q Consensus 103 ~~~~~~~~~~~~~I~Lp~pl~p~~~v~l~v~~~ 135 (450)
+. ..-..|++.+. ++.||++++|.++|.
T Consensus 84 eq----~~~~~F~~~V~-nIpp~~~v~i~l~Y~ 111 (596)
T TIGR03788 84 EQ----QRPNLFTNKVA-NIGPGETVVVTIEYQ 111 (596)
T ss_pred ec----ccCCceeEEee-ccCCCCEEEEEEEEE
Confidence 00 11246888886 799999999999987
No 6
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=64.88 E-value=31 Score=36.22 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.0
Q ss_pred EEEcCCcCCCCCeEEEEEEEE
Q 013053 115 AVKLPKALGKGDSYTFDVLAV 135 (450)
Q Consensus 115 ~I~Lp~pl~p~~~v~l~v~~~ 135 (450)
.|.=+.|++|||+.++.|+..
T Consensus 333 ~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 333 EVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred eeCCCCCcCCCcceEEEEEEe
Confidence 445567999999999999854
No 7
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=62.05 E-value=2.1e+02 Score=30.11 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=96.7
Q ss_pred EEEEEEEEEEeeceEEEEEEEEEEEEcCCCCCCCcch-hhhccCcC-ccccceeeEeeeccCCcccCeEEEeccceeeee
Q 013053 228 GQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSR-LDYQARPT-IRGASAFKYLIAKMPPRVHSVYYRDEIGNISTS 305 (450)
Q Consensus 228 v~~L~R~IeVSHWGnI~vEE~y~l~N~GA~Lkg~FSR-~d~~~~~~-~~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS 305 (450)
++++.=+++|..=|.+.|+|.+...=+|. ..+.-| ++-..... ......++.+...-.. .-|.-.+-
T Consensus 4 I~~~~v~~~v~~dG~~~V~E~ity~f~~~--~~giyr~i~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~~~~~ 72 (511)
T PF09972_consen 4 IDSYDVDATVQEDGSLDVTETITYDFDGS--FHGIYRTIPLKGTGQLGDDKQSIKNFSVSDDG---------SSGKPGTY 72 (511)
T ss_pred ceeeEEEEEECCCCcEEEEEEEEEEeccC--CceEEEEeccCCCCCCCcccccceeEEEEeCC---------CcCCCcce
Confidence 56778888888889999999999886665 223222 22221100 0000112222211111 12222233
Q ss_pred eeecCCCeeEEEEcccCcccCCcceeEEEeecCCccccEEecCCeEEEEEeecCCCCceEEEEEEEEEEcCCCCccceee
Q 013053 306 NLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVS 385 (450)
Q Consensus 306 ~~r~~~~~~~l~l~PRfPLfGGWk~~FtiGyn~pl~~~L~~~~~~yiL~vp~~~~~~d~~~d~~~l~IiLPEGA~~i~v~ 385 (450)
++....+..++.+.-=.|--.|=...|++-|++.- .+..-++.--|.-.+...--++-+++++++|.||++...+++.
T Consensus 73 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~Y~v~~--~v~~~~D~~el~w~~~g~~~~~~i~~v~v~i~~P~~~~~~~~~ 150 (511)
T PF09972_consen 73 GIEETDDGYEIRIGIYDPSKNGGTHTYTISYTVKN--AVTNYSDVAELYWNFIGSGWDVPIENVTVTITLPKPVDNSKAW 150 (511)
T ss_pred EEEecCCcceEEEEecCccccCCeEEEEEEEEEEC--ceEEcCCeeEEEEEEecCCCCCccceEEEEEECCCCCcceEEE
Confidence 33333334456666666666545667888887753 3443333333556665444678999999999999877776553
Q ss_pred CC-cceeeeceeEEEeccCCCCcEEEEEecCCCcCCcceEEEEe
Q 013053 386 AP-FPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIW 428 (450)
Q Consensus 386 ~P-~~v~~~~~~~~tyLDt~GRpvv~l~~~Nlv~~h~~~~~v~Y 428 (450)
.= -+...... ++ .....|+++..++-+.....+.+.+
T Consensus 151 ~~~g~~~~~~~-----~~-~~~~~v~~~~~~l~~~~~~~v~~~f 188 (511)
T PF09972_consen 151 GHPGPYGGTVE-----ID-DDDGTVTFTTDNLPPNEGVEVRVSF 188 (511)
T ss_pred EeccCCCccce-----ee-ecCCEEEEEEeccCCCCeEEEEEEc
Confidence 21 11111111 11 2455677777775333344555544
No 8
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=59.12 E-value=88 Score=28.27 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.0
Q ss_pred ceEEEEEcCCcCCCCCeEEEEEEEEec
Q 013053 111 LTFYAVKLPKALGKGDSYTFDVLAVFA 137 (450)
Q Consensus 111 ~~~~~I~Lp~pl~p~~~v~l~v~~~~~ 137 (450)
.+...|.+..|++||++++|.++-+.+
T Consensus 88 ~~~i~I~f~~PV~pG~tv~V~l~~v~N 114 (146)
T PF10989_consen 88 GRTITITFDEPVPPGTTVTVVLSPVRN 114 (146)
T ss_pred CCEEEEEeCCCCCCCCEEEEEEEeeeC
Confidence 467899999999999999999875543
No 9
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=54.85 E-value=93 Score=29.55 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=49.0
Q ss_pred EEEEEEEEEEeCCCCC---eeEEEEEeCCcccccee---E--EEEEecCCCccccccccccceeeecCCCCCCcceEEEE
Q 013053 45 VRITSTLKVENEGSEP---VSEVLLAFPDLQVKDLA---L--LKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAV 116 (450)
Q Consensus 45 vk~~~~i~ikN~g~~p---~~~y~~~l~~~~~~~ls---~--isa~~~~~k~k~~~~~~~l~~~~~~~~~~~~~~~~~~I 116 (450)
--++=++++.|..+.. -.++.|-+|..--+++. . +++..++.. ..--++.+.+.+++-..+
T Consensus 52 YPI~Pkl~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght-----------~~g~NiGGL~gdfHrvs~ 120 (180)
T PF06483_consen 52 YPINPKLTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHT-----------AAGNNIGGLKGDFHRVSF 120 (180)
T ss_pred CCcCCcEEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCc-----------ccCCcccccCCceEEEEE
Confidence 3456788888876544 46777877755422111 1 111111000 000112234566788999
Q ss_pred EcCC--cCCCCCeEEEEEEEEec
Q 013053 117 KLPK--ALGKGDSYTFDVLAVFA 137 (450)
Q Consensus 117 ~Lp~--pl~p~~~v~l~v~~~~~ 137 (450)
+||. .|+||+++++.+.|.+-
T Consensus 121 tlp~wqslapG~s~~~~~~YyLP 143 (180)
T PF06483_consen 121 TLPAWQSLAPGASVELDMVYYLP 143 (180)
T ss_pred ECCCccccCCCCEEEEeEEEEec
Confidence 9998 99999999999998874
No 10
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=53.46 E-value=2.9e+02 Score=29.05 Aligned_cols=128 Identities=12% Similarity=0.164 Sum_probs=80.3
Q ss_pred EEeEEEEEEEcCCC---eEEEEEEEEEEeCCCCCeeEEEEEeCCccc-------cceeEEEEEecCCCccccccccccce
Q 013053 30 ILSKVDRRIDLTSQ---IVRITSTLKVENEGSEPVSEVLLAFPDLQV-------KDLALLKASPHEGKGKVKSLSASLPV 99 (450)
Q Consensus 30 ~n~~v~R~Idl~~~---~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~-------~~ls~isa~~~~~k~k~~~~~~~l~~ 99 (450)
.+++++=+++|... .|.|+.+++++.. -+..+..+|.... ..+..+++..++...+ .....+
T Consensus 3 ~I~~~~v~~~v~~dG~~~V~E~ity~f~~~----~~giyr~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~ 74 (511)
T PF09972_consen 3 SIDSYDVDATVQEDGSLDVTETITYDFDGS----FHGIYRTIPLKGTGQLGDDKQSIKNFSVSDDGSSGK----PGTYGI 74 (511)
T ss_pred cceeeEEEEEECCCCcEEEEEEEEEEeccC----CceEEEEeccCCCCCCCcccccceeEEEEeCCCcCC----CcceEE
Confidence 34455555565443 4667666666552 4666777777665 5566666665431001 112222
Q ss_pred eeecCCCCCCcceEEEEEcCCcCCCCCeEEEEEEEEecccccccCcccccCcceEEEEEec-ceeeCcceeeEEEEEEEe
Q 013053 100 ENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQES-AFYLTPYVVKVQSLSVKL 178 (450)
Q Consensus 100 ~~~~~~~~~~~~~~~~I~Lp~pl~p~~~v~l~v~~~~~~~l~P~P~~I~q~e~Q~l~f~~n-~y~~SpY~t~~q~t~v~l 178 (450)
+. ..+..-++|....+...+++.+++++|.+.+....+ +|.+.+.|+.- ...- .+.++-+++|.+
T Consensus 75 ~~------~~~~~~~~i~~~~~~~~~~~~~~~~~Y~v~~~v~~~------~D~~el~w~~~g~~~~--~~i~~v~v~i~~ 140 (511)
T PF09972_consen 75 EE------TDDGYEIRIGIYDPSKNGGTHTYTISYTVKNAVTNY------SDVAELYWNFIGSGWD--VPIENVTVTITL 140 (511)
T ss_pred Ee------cCCcceEEEEecCccccCCeEEEEEEEEEECceEEc------CCeeEEEEEEecCCCC--CccceEEEEEEC
Confidence 22 112234788888998888999999999999999977 56677777632 3333 345677888999
Q ss_pred c
Q 013053 179 P 179 (450)
Q Consensus 179 ~ 179 (450)
|
T Consensus 141 P 141 (511)
T PF09972_consen 141 P 141 (511)
T ss_pred C
Confidence 8
No 11
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.55 E-value=73 Score=30.13 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=16.4
Q ss_pred EEEEEEEEEeCCCCCeeEEEE
Q 013053 46 RITSTLKVENEGSEPVSEVLL 66 (450)
Q Consensus 46 k~~~~i~ikN~g~~p~~~y~~ 66 (450)
..+++++|.|.|++++.+.-+
T Consensus 39 ~v~V~~~iyN~G~~~A~dV~l 59 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDVKL 59 (181)
T ss_pred EEEEEEEEEECCCCeEEEEEE
Confidence 578889999999988765544
No 12
>PF15240 Pro-rich: Proline-rich
Probab=44.86 E-value=12 Score=35.40 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhccCc-cCCceEEeEEE
Q 013053 8 ALRFDLIIFTILLFASP-VLSDLILSKVD 35 (450)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~n~~v~ 35 (450)
||++||.++||||.++. ..+++.+++..
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~~e~~~ 29 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVSQEESP 29 (179)
T ss_pred ChhHHHHHHHHHhhhccccccccccccCc
Confidence 57788888888885544 45666666543
No 13
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=42.28 E-value=35 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=15.6
Q ss_pred EEEEcC-CcCCCCCeEEEEEEE
Q 013053 114 YAVKLP-KALGKGDSYTFDVLA 134 (450)
Q Consensus 114 ~~I~Lp-~pl~p~~~v~l~v~~ 134 (450)
..++++ .+++||++..|.|.|
T Consensus 24 t~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 24 TTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEeeCCcceECCCCEEEEEEEC
Confidence 344444 379999999999875
No 14
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=41.20 E-value=1.8e+02 Score=30.84 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=52.3
Q ss_pred EEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecCCCCCCcceEE
Q 013053 35 DRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFY 114 (450)
Q Consensus 35 ~R~Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (450)
.-++++-..-+ +.+++++|.|++|+.-=-| ...++.++.+.....+. ...-+... .. =.
T Consensus 255 ~A~Y~vpgR~l--~~~l~VtN~g~~pv~LgeF-----~tA~vrFln~~v~~~~~-------~~P~~l~A----~~---gL 313 (381)
T PF04744_consen 255 DATYRVPGRTL--TMTLTVTNNGDSPVRLGEF-----NTANVRFLNPDVPTDDP-------DYPDELLA----ER---GL 313 (381)
T ss_dssp EEEEESSSSEE--EEEEEEEEESSS-BEEEEE-----ESSS-EEE-TTT-SS-S----------TTTEE----TT----E
T ss_pred ccEEecCCcEE--EEEEEEEcCCCCceEeeeE-----EeccEEEeCcccccCCC-------CCchhhhc----cC---cc
Confidence 45677777644 4567888999999641111 23567776432211100 00000000 01 14
Q ss_pred EEEcCCcCCCCCeEEEEEEEEec----ccccccCcccccCcceEEEEEecceeeCcceeeEEEEEEEe
Q 013053 115 AVKLPKALGKGDSYTFDVLAVFA----HALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKL 178 (450)
Q Consensus 115 ~I~Lp~pl~p~~~v~l~v~~~~~----~~l~P~P~~I~q~e~Q~l~f~~n~y~~SpY~t~~q~t~v~l 178 (450)
.|+=+.|++|||+.+++|+..=. +.|.+. |.-.| -.|.+-.++.++ .-+.|-..|..
T Consensus 314 ~vs~~~pI~PGETrtl~V~a~dA~WeveRL~~l---~~D~d---srfgGLLff~d~-~G~r~i~~I~g 374 (381)
T PF04744_consen 314 SVSDNSPIAPGETRTLTVEAQDAAWEVERLSDL---IYDPD---SRFGGLLFFFDA-SGNRYISEIAG 374 (381)
T ss_dssp EES--S-B-TT-EEEEEEEEE-HHHHHTTGGGG---GGSSS----EEEEEEEEEET-TS-EEEEEEEE
T ss_pred eeCCCCCcCCCceEEEEEEeehhHHHHhhhhhh---hcCcc---cceeEEEEEEcC-CCCEEEEeccC
Confidence 55556799999999999987532 333321 22222 345555666665 33444455544
No 15
>PF08441 Integrin_alpha2: Integrin alpha; InterPro: IPR013649 This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of IPR013517 from INTERPRO repeats and to the N terminus of the IPR013513 from INTERPRO cytoplasmic region. ; PDB: 1M1X_A 1U8C_A 1L5G_A 3IJE_A 1JV2_A 2VDN_A 2VC2_A 3NIF_A 3NIG_C 2VDM_A ....
Probab=39.38 E-value=4.9e+02 Score=27.51 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=54.4
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecCCCCCCcceEEEE
Q 013053 38 IDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAV 116 (450)
Q Consensus 38 Idl~~~~vk~~~~i~ikN~g~~p-~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~~~~~~~~~~~~I 116 (450)
+-|+ +--...++++|+|.|..+ ....++.+|.. |.+..+...... ...+.+....... .....-
T Consensus 185 l~lg-~~~~l~l~v~v~N~GE~AY~a~l~v~~P~~----l~~~~v~~~~~~------~~~~~C~~~~~~~----~~~~~C 249 (457)
T PF08441_consen 185 LVLG-SDNTLNLNVTVTNKGEDAYEAKLTVTYPSG----LSYSKVEKKQNS------DSPISCSQPESNS----SSTVSC 249 (457)
T ss_dssp EECS-S-EEEEEEEEEEESSS-BSSEEEEEEEETT----EEEEEEE-SSSS------SC--EEEEEESSS----SCEEEE
T ss_pred EEEC-CCCEEEEEEEEEECCCCCCceeEEEECCCC----cccccccccccc------ccceecccCCCCC----ceEEEE
Confidence 5666 447888999999998766 66777888765 666665521111 1234555543321 115677
Q ss_pred EcCCcCCCCCeEEEEEEEEecc
Q 013053 117 KLPKALGKGDSYTFDVLAVFAH 138 (450)
Q Consensus 117 ~Lp~pl~p~~~v~l~v~~~~~~ 138 (450)
.|..|+.+|+++++.+.+-...
T Consensus 250 ~lgnPl~~~~~~~~~l~f~~~~ 271 (457)
T PF08441_consen 250 SLGNPLKRGSQVTFSLRFDVSS 271 (457)
T ss_dssp EEETSBBTTEEEEEEEEEEE-T
T ss_pred ECChhhhcCCcceEEEEeeccc
Confidence 8889999999999998877543
No 16
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=38.57 E-value=1.8e+02 Score=24.88 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeec--CCCCCCcceEEEEEcCCcCCCCC
Q 013053 49 STLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVK--PNGMPAALTFYAVKLPKALGKGD 126 (450)
Q Consensus 49 ~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~--~~~~~~~~~~~~I~Lp~pl~p~~ 126 (450)
.-.+|+|.|+++.. +..+....+.+.-+-.....++.-+-+. -..+.+..-. .. .+++.+.-...+..++.+|+
T Consensus 18 ~y~ti~N~g~~~~~--L~~v~s~~a~~v~lh~~~~~~g~~~m~~-v~~i~ipa~~~v~l-~pgg~HlmL~g~~~~l~~G~ 93 (110)
T PF04314_consen 18 AYFTITNNGDQDDR--LVGVSSPAAARVELHETVMEDGVMKMRP-VDSIPIPAGSTVEL-KPGGYHLMLMGLKRPLKPGD 93 (110)
T ss_dssp EEEEEE-CSSSEEE--EEEEE-TTCCEEEEEEECCCCCEEEECC-SS-EEEETT-EEEE--CCCCEEEEECESS-B-TTE
T ss_pred EEEEEEeCCCCCeE--EEEEEcCCCceEEEEEEEccCCeEEEEE-CCCEEECCCCeEEe-cCCCEEEEEeCCcccCCCCC
Confidence 34788898876654 6666666566555544333222111100 0111111100 00 23344555667778999999
Q ss_pred eEEEEEEE
Q 013053 127 SYTFDVLA 134 (450)
Q Consensus 127 ~v~l~v~~ 134 (450)
++.+++.+
T Consensus 94 ~v~ltL~f 101 (110)
T PF04314_consen 94 TVPLTLTF 101 (110)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 98888764
No 17
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=35.96 E-value=2.3e+02 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEEEEEEeCCCCCeeEEEEEeC
Q 013053 45 VRITSTLKVENEGSEPVSEVLLAFP 69 (450)
Q Consensus 45 vk~~~~i~ikN~g~~p~~~y~~~l~ 69 (450)
.-....++|+|.|+.|+....|.+.
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~ 41 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISID 41 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEC
Confidence 4466788999999999999888876
No 18
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=32.14 E-value=7.6e+02 Score=27.64 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=55.2
Q ss_pred EEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecCCCCCC
Q 013053 30 ILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPA 109 (450)
Q Consensus 30 ~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~~~~~~ 109 (450)
..-++.=++|+.+..+.-+++|+++...+ +.++..+-. ..|..-+|.+++. .+..+..... +.
T Consensus 14 ~hy~L~L~vd~~~~~~~G~v~i~l~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g~---------~~~~~~~~~~--~~ 76 (601)
T TIGR02411 14 SHTDLNLSVDFTKRKLSGSVTFTLQSLTD-NLNSLVLDT-----SYLDIQKVTINGL---------PADFAIGERK--EP 76 (601)
T ss_pred EEEEEEEEEeecCCEEEEEEEEEEEECCC-CCcEEEEEC-----CCCEEEEEEECCc---------ccceEecccc--CC
Confidence 34455567888888888899999887532 234444443 2344445555332 1112111110 11
Q ss_pred cceEEEEEcCCcCCCCCeEEEEEEEEec
Q 013053 110 ALTFYAVKLPKALGKGDSYTFDVLAVFA 137 (450)
Q Consensus 110 ~~~~~~I~Lp~pl~p~~~v~l~v~~~~~ 137 (450)
.-..+.|.||.++++|+..+|.|.|.-.
T Consensus 77 ~g~~L~I~l~~~l~~g~~~~l~I~Y~~~ 104 (601)
T TIGR02411 77 LGSPLTISLPIATSKNKELVLNISFSTT 104 (601)
T ss_pred CCCeEEEEeCCccCCCceEEEEEEEeec
Confidence 1246899999999999999999988754
No 19
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=31.49 E-value=2.9e+02 Score=22.65 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=40.1
Q ss_pred eEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEEecC
Q 013053 29 LILSKVDRRIDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHE 85 (450)
Q Consensus 29 ~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p-~~~y~~~l~~~~~~~ls~isa~~~~ 85 (450)
+.-+.+.=+.-+.+...+.+..++.+|..+.| ...|+|.|+++ ..++.++|.+.+
T Consensus 12 LpL~~~~v~a~v~G~~~~~ta~lty~N~~~~plEg~f~fPL~e~--~~V~gfea~i~g 67 (78)
T PF13757_consen 12 LPLQSSRVTACVNGYSAGTTASLTYENPEDRPLEGVFVFPLDEG--ATVVGFEADIGG 67 (78)
T ss_pred ceEEEeEEEEEEEcccccEEEEEEEECCCCCcEEEEEEEecCCC--cEEEEEEEEeCC
Confidence 34444444555667778999999999999988 55667777655 678888888754
No 20
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=31.34 E-value=16 Score=38.32 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred cCCCCCeEEEEEEEEecccccc
Q 013053 121 ALGKGDSYTFDVLAVFAHALRP 142 (450)
Q Consensus 121 pl~p~~~v~l~v~~~~~~~l~P 142 (450)
+|+||++++..+...-++-|.+
T Consensus 101 ~L~pG~sve~~fDiA~~~dLs~ 122 (359)
T PF02102_consen 101 TLAPGESVEVEFDIAETHDLSS 122 (359)
T ss_dssp ----------------------
T ss_pred ecCCCCeEEEEEcchheeecCC
Confidence 7999999999988888887765
No 21
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.08 E-value=1.2e+02 Score=29.68 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhccCccCCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCC
Q 013053 7 MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEP 60 (450)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p 60 (450)
|+++...+++||+.++.+..+++... -+|.|--.++ -...++++|.++.|
T Consensus 4 ~~~~~~~~~~l~~~~~~~a~a~v~l~-~tRvi~~~~~---~~~si~v~N~~~~p 53 (230)
T PRK09918 4 NLFFLFTALVLLSSSSAVHAAGMVPE-TSVVIVEESD---GEGSINVKNTDSNP 53 (230)
T ss_pred hhHHHHHHHHHHHhhhHhhEeeEEEc-cEEEEEECCC---CeEEEEEEcCCCCc
Confidence 33333333333333333334555554 3666655543 45677889988765
No 22
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=27.99 E-value=6.5e+02 Score=25.54 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=52.0
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecCCCCCCcceEEEEE
Q 013053 38 IDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVK 117 (450)
Q Consensus 38 Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~~~~~~~~~~~~I~ 117 (450)
+|+.+....=++.|+++... +.+...+... ++..-++.+.+...... ......... .+.....|.
T Consensus 17 ~~~~~~~f~G~v~I~~~~~~--~~~~I~L~~~-----~l~I~~v~~~~~~~~~~-----~~~~~~~~~---~~~~~l~I~ 81 (390)
T PF01433_consen 17 PDFEKRTFSGTVTITFEVTE--PTNSIVLHAK-----DLSISSVSLNGNDSSSE-----YKSSPFEYD---DENEKLTIT 81 (390)
T ss_dssp EETTTTEEEEEEEEEEEESS--TECEEEEEES-----SEEEEEEEETTEECSCT-----ECCEEEEEE---CCBTEEEEE
T ss_pred EeCCCCEEEEEEEEEEEEec--CCCEEEEEee-----ccEEEEEeecCcccccc-----ccccceeec---cccceeehh
Confidence 77888888888888888854 6776666532 34444555543211110 000111111 112468999
Q ss_pred cCCcCCCCCeEEEEEEEEe
Q 013053 118 LPKALGKGDSYTFDVLAVF 136 (450)
Q Consensus 118 Lp~pl~p~~~v~l~v~~~~ 136 (450)
|+.++.+|+..+|.|.|.-
T Consensus 82 l~~~l~~g~~~~L~I~y~g 100 (390)
T PF01433_consen 82 LPKPLPPGSNYTLRIEYSG 100 (390)
T ss_dssp EEEECSTTEEEEEEEEEEE
T ss_pred hhhhcccCcEEEEEEEEee
Confidence 9999999999999988764
No 23
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.93 E-value=3.8e+02 Score=23.39 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=42.1
Q ss_pred EEEEcCCcCCCCCeEEEEEEEEecccccccCcc-----------cccCcceEEEEEecceeeCcceeeEEEEEEEec
Q 013053 114 YAVKLPKALGKGDSYTFDVLAVFAHALRPFPEK-----------ITQADIQLVVFQESAFYLTPYVVKVQSLSVKLP 179 (450)
Q Consensus 114 ~~I~Lp~pl~p~~~v~l~v~~~~~~~l~P~P~~-----------I~q~e~Q~l~f~~n~y~~SpY~t~~q~t~v~l~ 179 (450)
..|.+ .+-..-++++..|...+.+.-.|+|-- =....-|.+.|+.+..+.+.|+.-+.+++++|-
T Consensus 34 ~~i~F-~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~v~~~~P~i~~~v~~~L~ 109 (123)
T cd00916 34 VSIDF-TPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLPVLAPYPGISVTVEWELT 109 (123)
T ss_pred EEEEE-EcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeeeccccCCCeEEEEEEEEE
Confidence 44444 233344556666777777666676621 123335778888888888899988888888773
No 24
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=24.15 E-value=5.1e+02 Score=23.02 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=59.7
Q ss_pred EEEcCCCe-EEEEEEEEEEeC-CCCCeeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecC---C--CCCC
Q 013053 37 RIDLTSQI-VRITSTLKVENE-GSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKP---N--GMPA 109 (450)
Q Consensus 37 ~Idl~~~~-vk~~~~i~ikN~-g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~---~--~~~~ 109 (450)
||+-.++. ..+...++|-|. |-+..+++.+.+.+. .+.+..+.|.+-....+...... -++..... . ..-.
T Consensus 1 tv~~dg~~~~~~~~~iki~~~~g~~~~~~~~i~y~~~-~~~~~~~~a~v~~~dg~i~~~~~-~~i~~~~~~~~~~~~~y~ 78 (177)
T PF12969_consen 1 TVDPDGSVEYYIRQVIKILNEEGVEDYSEISISYDPD-YEKLKIHKARVIRPDGKIDKLDK-SDIKDRSAESASEAPIYS 78 (177)
T ss_dssp EE-TTS-EEEEEEEEEEE-SHHHHTSGGEEEEEE-TT-TEEEEEEEEEEE-TTS-EEE--G-GGEEEE--GGGTT-GGGT
T ss_pred CCCCCCcEEEEEEEEEEEcCHHHhhhcceEEEEeCCC-CcEEEEEEEEEEcCCCeEEecCh-HHeEEeeccccccccccc
Confidence 34555553 355666666663 334446777766443 45688887766554443211110 01111111 0 1113
Q ss_pred cceEEEEEcCCcCCCCCeEEEEEEEEecccccccCcccccCcceEEEEEecceeeCcceeeEEEEEEEecCCCccee
Q 013053 110 ALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESY 186 (450)
Q Consensus 110 ~~~~~~I~Lp~pl~p~~~v~l~v~~~~~~~l~P~P~~I~q~e~Q~l~f~~n~y~~SpY~t~~q~t~v~l~s~~i~s~ 186 (450)
+.+...+.||. |++|+.+.+..+....+.+. |. .|-...++..-+++.....+|..|.+.-..+
T Consensus 79 ~~~~~~~~~p~-v~~GdiIe~~y~~~~~~p~~--~~----------~~~~~~~f~~~~pv~~~~~~v~~P~~~~l~~ 142 (177)
T PF12969_consen 79 DSRTKVFAFPD-VRVGDIIEYSYTIKSKNPYF--PG----------YFSDSFYFQSSIPVRRSRFTVIVPKDLPLNY 142 (177)
T ss_dssp T-EEEEEE--S---TT-EEEEEEEEEE-TTS---SS-----------EEEEE---SS--EEEEEEEEEEETTS--EE
T ss_pred CcEEEEEEcCC-CCCCcEEEEEEEEEecCCcc--CC----------ccccEEEeccCCceeeEEEEEEeCCCCeEEE
Confidence 34566799986 99999766665554443221 11 2333445556678999999999987643333
No 25
>PRK13839 conjugal transfer protein TrbG; Provisional
Probab=23.77 E-value=7.3e+02 Score=25.17 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=30.9
Q ss_pred ceeeeceeEEEeccCC------CCcEEEEEecCCCcCCcceEEEEeeccccCccccccccccccee
Q 013053 389 PVNQWEETKLSHLDLT------GRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSI 448 (450)
Q Consensus 389 ~v~~~~~~~~tyLDt~------GRpvv~l~~~Nlv~~h~~~~~v~Y~~~~~~~~~~~~~~~~~l~~ 448 (450)
|+..-++-.+|||-.- ..|+|-... + .+.-.|.|+..-..=+.+...+-++|+.
T Consensus 203 P~~VyDDG~~Tyi~fp~~~~~~e~Palfvv~-----~-G~e~lVNyrv~g~~~VVd~v~~~~~Lr~ 262 (277)
T PRK13839 203 PTRVYSDGLKTYIQFPRSISGQDAPVLFVVS-----G-GQNRIVNYRMKNDMMVVDYNIDRAVLVS 262 (277)
T ss_pred eeEEEECCeEEEEEeCCCCCCCcCCeEEEEc-----C-CcEEeeeeeEECCEEEEeccCCcEEEEe
Confidence 3456778889999653 367776541 1 3455666654433334445555555554
No 26
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.44 E-value=2e+02 Score=21.36 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=23.9
Q ss_pred EEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEE
Q 013053 46 RITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKAS 82 (450)
Q Consensus 46 k~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~ 82 (450)
.++.+|+++|.|..+++...+. ..+=..+.++++.
T Consensus 13 ~v~Yti~v~N~g~~~a~~v~v~--D~lP~g~~~v~~S 47 (53)
T TIGR01451 13 TITYTITVTNNGNVPATNVVVT--DILPSGTTFVSNS 47 (53)
T ss_pred EEEEEEEEEECCCCceEeEEEE--EcCCCCCEEEeCc
Confidence 4678899999999888765542 3333567777543
No 27
>PF13141 DUF3979: Protein of unknown function (DUF3979)
Probab=22.41 E-value=78 Score=26.97 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=45.9
Q ss_pred cCCcceeEEEeecCCccccEEecCCeEEEEEeecCCCCceEEEEEEEEEEcCCCCccceeeCCcceeeeceeEEEeccCC
Q 013053 325 FGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLT 404 (450)
Q Consensus 325 fGGWk~~FtiGyn~pl~~~L~~~~~~yiL~vp~~~~~~d~~~d~~~l~IiLPEGA~~i~v~~P~~v~~~~~~~~tyLDt~ 404 (450)
=|||||- ....+|+|-+ .+++..+++.+..++-|--+ + ..++.+.=.-.+
T Consensus 13 k~gwkyi------------iqe~n~~y~i-------v~~~~~~~msvelyfneyde-~----------ritlyk~g~pit 62 (114)
T PF13141_consen 13 KGGWKYI------------IQEQNGKYSI-------VNEILKEHMSVELYFNEYDE-V----------RITLYKDGNPIT 62 (114)
T ss_pred CCCcEEE------------EEEcCCcEEe-------hHHHhhhceeeEEEecccce-E----------EEEEEeCCCchh
Confidence 4899973 2256777753 35566667777777665332 1 111111100111
Q ss_pred CCcEEEEEecCCCcCCcc-eEEEEeeccccCcccccccccc
Q 013053 405 GRPVVVLQKTNVVPEHNQ-FFQLIWQDCSGMKFKQQFNKLK 444 (450)
Q Consensus 405 GRpvv~l~~~Nlv~~h~~-~~~v~Y~~~~~~~~~~~~~~~~ 444 (450)
.-..|.+.|-.+-++..+ +|.+ =+|++-|--||-.+-++
T Consensus 63 tmqriai~k~el~e~~egiqfvl-ermpsrmirlqlkpyla 102 (114)
T PF13141_consen 63 TMQRIAISKVELEEDEEGIQFVL-ERMPSRMIRLQLKPYLA 102 (114)
T ss_pred heeeeeeEEeeecccchhhhhHH-HhChhhhhhhcccceee
Confidence 223344555555555433 3433 35788887777665554
No 28
>PRK11901 hypothetical protein; Reviewed
Probab=21.00 E-value=70 Score=33.13 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.1
Q ss_pred EEEEEEcCCCe
Q 013053 34 VDRRIDLTSQI 44 (450)
Q Consensus 34 v~R~Idl~~~~ 44 (450)
-+|.|||+++-
T Consensus 75 ~~knIdLS~ss 85 (327)
T PRK11901 75 AEKNIDLSGSS 85 (327)
T ss_pred cccceecCCCC
Confidence 37999998884
No 29
>PRK10905 cell division protein DamX; Validated
Probab=20.64 E-value=51 Score=34.04 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHhcc-----Ccc-CCceEEeEEEEEEEcCCC
Q 013053 7 MALRFDLIIFTILLFA-----SPV-LSDLILSKVDRRIDLTSQ 43 (450)
Q Consensus 7 ~~~~~~~~~~~~~~~~-----~~~-~~~~~n~~v~R~Idl~~~ 43 (450)
|+-..+|+|+||-++. ++. .+.-....-+|.|||+++
T Consensus 1 MiGiGilVLlLLIigIgSALkaP~~~~~~q~~~~eknIdLsgs 43 (328)
T PRK10905 1 MMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGN 43 (328)
T ss_pred CcchhHHHHHHHHHHHhHhhcCCCCCccccccccccceeccCC
Confidence 4444555555554422 222 122335567899999987
No 30
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.54 E-value=51 Score=28.02 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=4.9
Q ss_pred HHHHHHHHhccCc
Q 013053 12 DLIIFTILLFASP 24 (450)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (450)
|+|+++|++++.+
T Consensus 11 l~LA~lLlisSev 23 (95)
T PF07172_consen 11 LLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHhhh
Confidence 3333333334333
No 31
>PHA02090 hypothetical protein
Probab=20.05 E-value=50 Score=26.24 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=13.3
Q ss_pred EEEEcccCcccCCcceeEE-EeecC
Q 013053 315 ELLIEPRYPLFGGWRTAFT-IGYGL 338 (450)
Q Consensus 315 ~l~l~PRfPLfGGWk~~Ft-iGyn~ 338 (450)
.++.-|- ||||++-+ +||+.
T Consensus 41 v~e~m~d----g~~ktna~flgy~i 61 (79)
T PHA02090 41 VIEVMED----GGWKTNAEFLGYAI 61 (79)
T ss_pred EEEeccC----CCccccceeeeeee
Confidence 3455453 99999875 57664
Done!