Query 013054
Match_columns 450
No_of_seqs 154 out of 191
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iej_A DNA methyltransferase 1 100.0 2.3E-42 7.9E-47 290.0 5.2 86 99-184 2-91 (93)
2 3hm5_A DNA methyltransferase 1 100.0 4.4E-39 1.5E-43 270.8 5.0 84 99-182 2-89 (93)
3 1x58_A Hypothetical protein 49 97.4 4.2E-05 1.4E-09 59.9 1.7 47 128-174 9-57 (62)
4 3osg_A MYB21; transcription-DN 97.2 0.00026 8.9E-09 61.5 4.0 56 121-177 52-111 (126)
5 2cu7_A KIAA1915 protein; nucle 97.0 0.00031 1.1E-08 55.5 2.4 54 125-179 7-60 (72)
6 2k9n_A MYB24; R2R3 domain, DNA 96.7 0.00064 2.2E-08 57.3 2.4 52 127-179 53-104 (107)
7 3sjm_A Telomeric repeat-bindin 96.7 0.00066 2.3E-08 52.9 2.1 47 128-174 12-60 (64)
8 1guu_A C-MYB, MYB proto-oncoge 96.6 0.00094 3.2E-08 49.2 2.7 47 126-173 2-49 (52)
9 2din_A Cell division cycle 5-l 96.6 0.001 3.6E-08 51.4 3.0 54 126-181 8-61 (66)
10 1gv2_A C-MYB, MYB proto-oncoge 96.6 0.00089 3.1E-08 55.9 2.5 48 127-175 56-103 (105)
11 1w0t_A Telomeric repeat bindin 96.5 0.00075 2.6E-08 50.1 1.6 47 128-174 3-51 (53)
12 2llk_A Cyclin-D-binding MYB-li 96.2 0.00079 2.7E-08 54.1 0.2 44 127-172 23-66 (73)
13 2ltp_A Nuclear receptor corepr 95.2 0.00074 2.5E-08 55.7 0.0 51 125-176 14-64 (89)
14 2aje_A Telomere repeat-binding 96.2 0.0022 7.6E-08 54.9 2.9 48 127-174 13-64 (105)
15 1ity_A TRF1; helix-turn-helix, 96.2 0.0019 6.4E-08 50.5 2.1 47 128-174 11-59 (69)
16 2ckx_A NGTRF1, telomere bindin 96.2 0.002 6.9E-08 52.8 2.3 49 129-177 2-54 (83)
17 1gvd_A MYB proto-oncogene prot 96.1 0.0024 8.1E-08 47.1 2.4 46 126-172 2-48 (52)
18 1x41_A Transcriptional adaptor 96.1 0.0017 5.8E-08 49.5 1.5 47 125-172 6-53 (60)
19 2d9a_A B-MYB, MYB-related prot 96.1 0.0021 7E-08 48.8 1.7 46 126-172 7-53 (60)
20 2elk_A SPCC24B10.08C protein; 96.1 0.0021 7.2E-08 48.8 1.8 47 126-172 8-55 (58)
21 2cqr_A RSGI RUH-043, DNAJ homo 95.9 0.0034 1.2E-07 50.3 2.6 47 127-174 18-68 (73)
22 3zqc_A MYB3; transcription-DNA 95.9 0.0034 1.1E-07 54.7 2.7 56 121-177 44-103 (131)
23 1h8a_C AMV V-MYB, MYB transfor 95.9 0.002 6.8E-08 55.8 1.0 53 121-174 69-125 (128)
24 2yum_A ZZZ3 protein, zinc fing 95.9 0.0016 5.5E-08 51.5 0.4 53 126-179 7-65 (75)
25 2juh_A Telomere binding protei 95.5 0.0032 1.1E-07 55.1 1.0 49 128-176 18-70 (121)
26 2cjj_A Radialis; plant develop 95.5 0.0069 2.4E-07 50.7 2.8 52 127-179 8-63 (93)
27 2roh_A RTBP1, telomere binding 95.5 0.0034 1.2E-07 55.1 1.0 49 127-175 31-83 (122)
28 2dim_A Cell division cycle 5-l 95.2 0.0068 2.3E-07 47.3 1.8 48 125-173 7-55 (70)
29 2yus_A SWI/SNF-related matrix- 95.0 0.006 2.1E-07 49.4 1.1 45 127-172 18-62 (79)
30 1h89_C C-MYB, MYB proto-oncoge 94.9 0.0069 2.4E-07 54.1 1.1 53 121-174 100-156 (159)
31 1wgx_A KIAA1903 protein; MYB D 94.6 0.011 3.6E-07 47.6 1.5 45 127-172 8-56 (73)
32 2eqr_A N-COR1, N-COR, nuclear 94.2 0.015 5E-07 44.6 1.4 43 128-171 13-55 (61)
33 2cqq_A RSGI RUH-037, DNAJ homo 93.5 0.019 6.4E-07 45.8 0.9 44 127-172 8-55 (72)
34 3osg_A MYB21; transcription-DN 93.2 0.035 1.2E-06 47.9 2.3 46 127-173 11-56 (126)
35 1gv2_A C-MYB, MYB proto-oncoge 92.6 0.054 1.9E-06 44.9 2.4 47 125-172 2-49 (105)
36 2k9n_A MYB24; R2R3 domain, DNA 91.3 0.068 2.3E-06 44.8 1.6 43 129-172 3-46 (107)
37 1h89_C C-MYB, MYB proto-oncoge 89.6 0.18 6.2E-06 44.8 3.0 45 127-172 58-103 (159)
38 1h8a_C AMV V-MYB, MYB transfor 89.6 0.12 4.1E-06 44.4 1.8 45 127-172 27-72 (128)
39 1ug2_A 2610100B20RIK gene prod 89.3 0.2 6.8E-06 42.0 2.7 49 129-179 35-86 (95)
40 4eef_G F-HB80.4, designed hema 89.3 0.081 2.8E-06 42.7 0.3 41 128-169 21-65 (74)
41 3zqc_A MYB3; transcription-DNA 89.1 0.21 7.2E-06 43.2 2.9 45 128-173 3-48 (131)
42 2yqk_A Arginine-glutamic acid 80.2 0.79 2.7E-05 35.2 2.1 45 126-170 8-52 (63)
43 2lr8_A CAsp8-associated protei 80.9 0.37 1.3E-05 38.4 0.0 44 129-174 16-62 (70)
44 2iw5_B Protein corest, REST co 75.2 0.85 2.9E-05 43.9 1.1 44 127-171 133-176 (235)
45 2crg_A Metastasis associated p 68.2 2.7 9.4E-05 32.9 2.4 46 128-174 9-54 (70)
46 1ign_A Protein (RAP1); RAP1,ye 63.6 3.6 0.00012 39.9 2.7 46 128-174 9-60 (246)
47 2ebi_A DNA binding protein GT- 60.6 2.3 8E-05 33.9 0.7 56 127-182 4-72 (86)
48 4b4c_A Chromodomain-helicase-D 60.4 5.2 0.00018 36.6 3.1 44 128-172 8-55 (211)
49 2gm2_A Conserved hypothetical 52.5 7.2 0.00024 34.0 2.5 32 328-360 81-112 (132)
50 2fvt_A Conserved hypothetical 49.2 7.2 0.00025 34.2 2.0 32 328-360 84-115 (135)
51 2ab1_A Hypothetical protein; H 48.9 7.4 0.00025 33.5 2.0 32 328-360 79-110 (122)
52 2fi9_A Outer membrane protein; 47.4 8 0.00027 33.4 2.0 32 328-360 85-116 (128)
53 1ofc_X ISWI protein; nuclear p 44.6 19 0.00066 35.8 4.4 60 113-174 91-156 (304)
54 3trt_A Vimentin; cytoskeleton, 44.2 36 0.0012 26.4 5.2 36 347-382 41-76 (77)
55 4a69_C Nuclear receptor corepr 42.5 13 0.00043 30.7 2.3 44 127-171 43-86 (94)
56 4dzn_A Coiled-coil peptide CC- 35.8 24 0.00081 23.6 2.3 28 356-386 6-33 (33)
57 2yf2_A C4B binding protein; im 32.4 83 0.0028 24.0 5.2 12 329-340 15-26 (65)
58 4d9a_A 2-pyrone-4,6-dicarbaxyl 27.2 74 0.0025 30.4 5.4 63 101-165 40-112 (303)
59 2y9y_A Imitation switch protei 27.0 36 0.0012 34.8 3.2 61 113-174 104-170 (374)
60 3cpk_A Uncharacterized protein 24.8 24 0.00083 31.7 1.3 32 328-360 105-136 (150)
61 3ku7_A MINE, cell division top 21.5 1.2E+02 0.0041 24.4 4.6 32 147-178 23-54 (80)
62 2akf_A Coronin-1A; coiled coil 21.5 1.4E+02 0.0046 20.1 4.0 27 353-379 4-30 (32)
63 2es9_A Putative cytoplasmic pr 20.4 78 0.0027 26.7 3.4 32 318-353 29-60 (115)
No 1
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=100.00 E-value=2.3e-42 Score=290.02 Aligned_cols=86 Identities=50% Similarity=0.914 Sum_probs=69.6
Q ss_pred CCCCCcccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 013054 99 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 174 (450)
Q Consensus 99 ~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~----~~RtvEDLK~RYY~V~~ 174 (450)
+++|+|||||++|+||+||+|||++||++++||+|||||||+||++|||||+||+|||+ ..|||||||+|||+||+
T Consensus 2 ~~~y~FakfN~~v~ip~yt~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp ------------CCCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCcCCCcccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999997 37999999999999999
Q ss_pred HHHHhcCCCC
Q 013054 175 AILIARAPSP 184 (450)
Q Consensus 175 ~l~~~R~~~~ 184 (450)
+|+++|+++.
T Consensus 82 ~l~~~r~~~~ 91 (93)
T 4iej_A 82 KLANVRAVPG 91 (93)
T ss_dssp HHHHHTC---
T ss_pred HHHHhhCCCC
Confidence 9999998763
No 2
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=270.79 Aligned_cols=84 Identities=51% Similarity=0.940 Sum_probs=68.4
Q ss_pred CCCCCcccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 013054 99 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 174 (450)
Q Consensus 99 ~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~----~~RtvEDLK~RYY~V~~ 174 (450)
+++|+|||||++++||+||+|||+.||++++||+|||||||+||++|||||+||+|||+ ..|||||||+|||+||+
T Consensus 2 ~~~y~fakfN~~~~i~~yt~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp -------------CCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCchhccccCCCCccCHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999996 47999999999999999
Q ss_pred HHHHhcCC
Q 013054 175 AILIARAP 182 (450)
Q Consensus 175 ~l~~~R~~ 182 (450)
+|+++|+.
T Consensus 82 ~l~~~r~~ 89 (93)
T 3hm5_A 82 KLANVRAV 89 (93)
T ss_dssp HHHHHTC-
T ss_pred HHHHhcCC
Confidence 99999964
No 3
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.42 E-value=4.2e-05 Score=59.87 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCC--CCCCHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDLRFIVIADRFP--SSRTVEELKDRYYGVSR 174 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDLRw~VI~DRy~--~~RtvEDLK~RYY~V~~ 174 (450)
..||.||+.+|++.+++|+-.|--|..-|. ..||-=|||+||+.+++
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 469999999999999999999999998655 58999999999998876
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.16 E-value=0.00026 Score=61.45 Aligned_cols=56 Identities=29% Similarity=0.551 Sum_probs=48.1
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 013054 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (450)
Q Consensus 121 Y~~~L~----d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~ 177 (450)
|..+|. ...||.||...|++++..|+-+|-.|+..++ .||-.++|.||+.+.+++-
T Consensus 52 w~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 52 WKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFP-GRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHHHHHHTT
T ss_pred HhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 445543 3479999999999999999999999998764 7999999999999998764
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.96 E-value=0.00031 Score=55.47 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=47.4
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 013054 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (450)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~~ 179 (450)
+....||.||-..|+++++.|+-+|-.|+..+ ..||-.+.|.||+...++++..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999865 4699999999999998887654
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.69 E-value=0.00064 Score=57.29 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~~ 179 (450)
...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.+++...
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFL-KNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHC-CCCCHHHHHHHHHHHHhhHHHh
Confidence 457999999999999999999999999765 5799999999999999987654
No 7
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.66 E-value=0.00066 Score=52.88 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCC-CCCCHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDL-RFIVIADRFP-SSRTVEELKDRYYGVSR 174 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~-~~RtvEDLK~RYY~V~~ 174 (450)
..||.||.+.|.+++++|+- .|-.|+.-|+ ..||--++++||..+.+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 46999999999999999995 8999998876 57999999999988764
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.64 E-value=0.00094 Score=49.20 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 013054 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V~ 173 (450)
....||.||-..|.+++..|+- +|-.|+..++ .||-.+.++||+.+-
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4467999999999999999998 9999998875 699999999998864
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.001 Score=51.44 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 013054 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 181 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~~R~ 181 (450)
....||.||-..|+++.+.|+-+|-.|+. +.. ||-.+.++||+...+..+..-.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 34579999999999999999999999999 764 9999999999999888776543
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.58 E-value=0.00089 Score=55.90 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 175 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~ 175 (450)
...||.||-..|++++..|+-+|-.|+..+ +.||-.++|.||+.+.++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTC-TTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHc-CCCCHHHHHHHHHHHHhc
Confidence 467999999999999999999999999766 469999999999987654
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.54 E-value=0.00075 Score=50.14 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCCC-CCCHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 174 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~-~RtvEDLK~RYY~V~~ 174 (450)
..||.||...|.+++..|+. +|-.|+..++. .||--++++||..+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46999999999999999995 99999998874 6999999999998865
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.24 E-value=0.00079 Score=54.05 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
-..||.||-+.|++|..+|+-+|-.|+..+ .||--++|+||+.+
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~l--gRt~~q~knRw~~L 66 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAAL--GRSASSVKDRCRLM 66 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHh--CCCHHHHHHHHHHH
Confidence 457999999999999999999999999998 89999999999975
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.23 E-value=0.00074 Score=55.71 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 013054 125 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 176 (450)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~l 176 (450)
+....||.||-..|+++...|+-+|-.|+..++ .||..++|.|||...+++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~-gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVG-SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 345679999999999999999999999998764 799999999999887764
No 14
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.21 E-value=0.0022 Score=54.86 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSR 174 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~---~~RtvEDLK~RYY~V~~ 174 (450)
-..||.||+..|.+.+++|+- +|--|...|. ..||--|||+||..+++
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 346999999999999999998 9999998774 58999999999998876
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.19 E-value=0.0019 Score=50.50 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCCC-CCCHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 174 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~-~RtvEDLK~RYY~V~~ 174 (450)
..||.||...|.++++.|+. +|-.|+..++. .||--++++||..+.+
T Consensus 11 ~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 11 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 46999999999999999995 99999998864 7999999999998766
No 16
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.16 E-value=0.002 Score=52.84 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHHHH
Q 013054 129 MWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAIL 177 (450)
Q Consensus 129 ~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~---~~RtvEDLK~RYY~V~~~l~ 177 (450)
.||.||.+.|.+++++|+. +|-.|...|. ..||--|||+||.+.+++-.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 5999999999999999999 9999987632 58999999999999887543
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.15 E-value=0.0024 Score=47.08 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
.-..||.||...|.+++..|+- +|-.|+..+ ..||-.+.++||+.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 4567999999999999999997 699999887 479999999999864
No 18
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.11 E-value=0.0017 Score=49.53 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
|....||.||-..|.++++.|+. +|-.|+..++ .||-.+.++||..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34567999999999999999995 9999998875 59999999999865
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.06 E-value=0.0021 Score=48.78 Aligned_cols=46 Identities=33% Similarity=0.562 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 126 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
....||.||...|.+++..|+. +|-.|+..++ .||--+.++||+.+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 4457999999999999999995 9999998875 69999999999875
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.06 E-value=0.0021 Score=48.81 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 126 TDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
....||.||-..|++++++|+ -+|-.|+...+..||-.+.++||..+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 356799999999999999999 69999998877689999999999764
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.95 E-value=0.0034 Score=50.31 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fD----LRw~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
...||.+|...|..++..|+ -||-.|+...+ .||.++.+.||..++.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45799999999999999999 69999998876 5999999999987754
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.92 E-value=0.0034 Score=54.69 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=47.1
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 013054 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (450)
Q Consensus 121 Y~~~L~----d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~ 177 (450)
|..||. ...||.||-..|++++..|+-+|-.|+..++ .||--++|.|||+..++-+
T Consensus 44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIP-GRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTST-TCCHHHHHHHHHHTTGGGC
T ss_pred HhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 555553 3579999999999999999999999997654 7999999999998876544
No 23
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.88 E-value=0.002 Score=55.77 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=45.2
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 121 Y~~~L~----d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
|..+|. ...||.||-..|+++...|+-+|-.|+..+ +.||-.++|.||+.+.+
T Consensus 69 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 69 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp HHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGS-TTCCHHHHHHHHHTTTT
T ss_pred HHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 555553 457999999999999999999999999776 47999999999998754
No 24
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.87 E-value=0.0016 Score=51.53 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHhhhcC------cceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 013054 126 TDPMWTKEETDQLFELCERFD------LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fD------LRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~~ 179 (450)
....||.||-..|.++...|+ -+|-.|+.-++ .||..+.++||.....++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999999 79999998765 599999999998777666543
No 25
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.53 E-value=0.0032 Score=55.15 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 176 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~---~~RtvEDLK~RYY~V~~~l 176 (450)
..||.||.+.|.+++++|+- +|-.|...|. ..||--|||+||...++.-
T Consensus 18 ~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 46999999999999999998 9999988764 5899999999999998753
No 26
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=95.48 E-value=0.0069 Score=50.68 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 013054 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fD----LRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~~ 179 (450)
...||.||-..|..++..|+ -||-.|+...+ .||.++.+.||-.....+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999996 68999998887 499999999999998876443
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.47 E-value=0.0034 Score=55.06 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 175 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~---~~RtvEDLK~RYY~V~~~ 175 (450)
-..||.||.+.|.+++++|+- +|-.|...+. ..||--|||+||....+.
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 346999999999999999998 9999987642 689999999999988764
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.21 E-value=0.0068 Score=47.31 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=42.6
Q ss_pred cCCCCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 013054 125 LTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (450)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RYY~V~ 173 (450)
++...||.||-..|.+++..|+ -+|-.|+..++ .||-.+.++||+.+-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHc
Confidence 4456799999999999999999 79999998876 799999999998753
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.05 E-value=0.006 Score=49.41 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
...||.||...|.++++.|+-+|--|+...+ .||.++.++||..+
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYKDDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSSSCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4679999999999999999999999988765 59999999999643
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.87 E-value=0.0069 Score=54.13 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=45.9
Q ss_pred HHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 121 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 121 Y~~~L~----d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
|..+|. ...||.||-.-|+++...|+-+|-.|+..+ +.||-.++|.||++..+
T Consensus 100 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 100 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL-PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp HHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTS-TTCCHHHHHHHHHTTTC
T ss_pred HHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 666663 457999999999999999999999999766 47999999999998654
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.63 E-value=0.011 Score=47.64 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCc----ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDL----Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
+..||.+|-.-|-.-+..||. ||-.|++..+. ||+||.+.||-..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 467999999999999999997 88888887765 9999999999754
No 32
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.21 E-value=0.015 Score=44.59 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~ 171 (450)
..||.||-..+.+....|+=+|-.|+ .+-+.||+.|+..+||.
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia-~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIA-SYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHH-HHCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHH-HHcCCCCHHHHHHHHHH
Confidence 46999999999999999999999999 55568999999999986
No 33
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.52 E-value=0.019 Score=45.82 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fD----LRw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
...||.||-..|-.++..|+ =||-.|+.-. .||++|++.+|=..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 45799999999999999997 6999998876 59999999987443
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=93.25 E-value=0.035 Score=47.91 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVS 173 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~ 173 (450)
-..||.||.+.|..++..|+.+|-.|+..++ .||-.+..+||+.+.
T Consensus 11 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-NRNARQCRDRWKNYL 56 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCHHHHHHTCT-TCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHhhhc
Confidence 4579999999999999999999999998875 699999999999764
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=92.55 E-value=0.054 Score=44.93 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
|.-..||.||...|..++..|+- +|-.|+..+ +.||..+.++||..+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 49 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhc
Confidence 34467999999999999999997 699999776 479999999999875
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=91.27 E-value=0.068 Score=44.77 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 129 MWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 129 ~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
.||.||-+.|..++..|+- +|..|+...+ .||-.+..+||..+
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNY 46 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHH
Confidence 5999999999999999996 8999988764 79999999999865
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=89.63 E-value=0.18 Score=44.84 Aligned_cols=45 Identities=27% Similarity=0.547 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
...||.||...|.+++..|+- +|-.|+.-+ +.||-.+.++||+..
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 457999999999999999996 799998766 579999999999875
No 38
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=89.63 E-value=0.12 Score=44.43 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V 172 (450)
-..||.||...|.+++..|+- +|-.|+..++ .||-.+.++||..+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHh
Confidence 357999999999999999996 6999987664 79999999999864
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=89.30 E-value=0.2 Score=42.01 Aligned_cols=49 Identities=20% Similarity=0.547 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHhhhcCc---ceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 013054 129 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSRAILIA 179 (450)
Q Consensus 129 ~WT~eETdyLfdLc~~fDL---Rw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~~ 179 (450)
-||+||-.-++.-|++=+- .|.+|+-.. .+||-+++++|||...+ |++.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-~Nks~nqV~~RFq~Lm~-Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFRELMQ-LFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHHHH-HHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHH-ccCCHHHHHHHHHHHHH-HHHH
Confidence 4999999999999999765 666665332 37999999999999987 4444
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=89.26 E-value=0.081 Score=42.67 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHhhhcCc----ceEEEecCCCCCCCHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRY 169 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDL----Rw~VI~DRy~~~RtvEDLK~RY 169 (450)
..||++|-..|=.....|+- ||-.|+...+ .||+||++.+|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY 65 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHY 65 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHH
Confidence 46999999999899999998 7777776665 49999999887
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=89.08 E-value=0.21 Score=43.19 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RYY~V~ 173 (450)
..||.||-+.|.+++..|+ -.|-.|+... +.||-.+..+||+.+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhcc
Confidence 3599999999999999999 5799998776 4799999999998764
No 42
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.24 E-value=0.79 Score=35.16 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHH
Q 013054 126 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 170 (450)
Q Consensus 126 ~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY 170 (450)
..+.||.||.....+-+..|+=.|.-|+--+-+.||+.|+..=||
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 457899999999889999999999999753556899999998887
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=80.89 E-value=0.37 Score=38.40 Aligned_cols=44 Identities=14% Similarity=0.512 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhhcCc---ceEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 129 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 129 ~WT~eETdyLfdLc~~fDL---Rw~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
-||+||-.-++.-|++=+- .|.+|+-.. +||-+++++||-...+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 4999999999999999888 999998776 6999999999966543
No 44
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=75.16 E-value=0.85 Score=43.92 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~ 171 (450)
...||.||...+.+..+.|+=.|.-|++- -..||+.+.|..||.
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~-VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDV-IGNKSVVQVKNFFVN 176 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHH-HSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHH-cCCCCHHHHHHHHHH
Confidence 46799999999999999999999999876 457999999999984
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=68.23 E-value=2.7 Score=32.86 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
+.||.||.....+-+..|+=-|.-|+--+-+.+|+.|+..=|| .-+
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wK 54 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWK 54 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhc
Confidence 5799999998888899999999999854667899999998888 444
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=63.62 E-value=3.6 Score=39.93 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHhhhcCcc------eEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDLR------FIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDLR------w~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
..||.||-..|+++.++|+-+ |-.|+ .+-..||--.+|+||..--+
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence 479999999999999999987 99999 45668999999999998433
No 47
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=60.63 E-value=2.3 Score=33.95 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCcce----------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 013054 127 DPMWTKEETDQLFELCERFDLRF----------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 182 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw----------~VI~DRy---~~~RtvEDLK~RYY~V~~~l~~~R~~ 182 (450)
...||.+||..|+++....+.+| -.|++.. +..||.+..++++=++.+.+-..+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~ 72 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH 72 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999877764 3333332 24799999999998888887777654
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=60.36 E-value=5.2 Score=36.61 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhhhcCc---ceEEEecCC-CCCCCHHHHHHHHHHH
Q 013054 128 PMWTKEETDQLFELCERFDL---RFIVIADRF-PSSRTVEELKDRYYGV 172 (450)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDL---Rw~VI~DRy-~~~RtvEDLK~RYY~V 172 (450)
.+||+.|+..|..-|.+|+. ||=.|..-- -..+|.+||++ ||.+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~-y~~~ 55 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR-LGEL 55 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH-HHHH
Confidence 47999999999999999982 443332100 13689999996 5544
No 49
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=52.55 E-value=7.2 Score=34.05 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013054 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (450)
Q Consensus 328 K~Ie~~L~ELgv~~kP~mPT~~vc~~f~eLR~~ 360 (450)
..+...|.+.||.+-. |+|.+-|..||.|..+
T Consensus 81 p~~~~~l~~~GI~vE~-m~T~aAcrTyNiL~~E 112 (132)
T 2gm2_A 81 TDVLAACLTRGIGLEA-MTNAAAARTYNVLASE 112 (132)
T ss_dssp HHHHHHHHHHTCEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4678899999999765 9999999999999864
No 50
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=49.24 E-value=7.2 Score=34.25 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013054 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (450)
Q Consensus 328 K~Ie~~L~ELgv~~kP~mPT~~vc~~f~eLR~~ 360 (450)
..+...|.+.||.+-. |+|.+-|..||.|..+
T Consensus 84 p~l~~~l~~~GI~vE~-M~T~aAcrTyNiL~~E 115 (135)
T 2fvt_A 84 RQLREALRGVNVVLDT-MQTGPAIRTYNIMIGE 115 (135)
T ss_dssp HHHHHHHHTTTCEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4677889999998765 9999999999999864
No 51
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=48.88 E-value=7.4 Score=33.51 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013054 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (450)
Q Consensus 328 K~Ie~~L~ELgv~~kP~mPT~~vc~~f~eLR~~ 360 (450)
..+...|.+.||.+-. |+|.+-|..||.|..+
T Consensus 79 ~~~~~~l~~~gI~ve~-m~T~~A~rtyN~L~~E 110 (122)
T 2ab1_A 79 SSTVEYLKKHGIDVRV-LQTEQAVKEYNALVAQ 110 (122)
T ss_dssp HHHHHHHHHTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 5678899999999765 9999999999999764
No 52
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=47.42 E-value=8 Score=33.43 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013054 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (450)
Q Consensus 328 K~Ie~~L~ELgv~~kP~mPT~~vc~~f~eLR~~ 360 (450)
..+...|.+.||.+-. |+|.+-|..||.|..+
T Consensus 85 p~~~~~l~~~GI~vE~-m~T~aAcrtyNiL~~E 116 (128)
T 2fi9_A 85 EELRVLLWEKRISSDT-MSTGAAVRTFNVLLAE 116 (128)
T ss_dssp HHHHHHHHHTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4677899999998765 9999999999999764
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=44.64 E-value=19 Score=35.80 Aligned_cols=60 Identities=28% Similarity=0.397 Sum_probs=44.4
Q ss_pred cccCCHHH---HHhhcCC--CCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 113 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 113 ip~ytdeE---Y~~~L~d--~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
...+|+|| -+.+|.. .+||+.+-.....-|..|+- .|--|+.=+ ...|+||+ .+||.|.=
T Consensus 91 ~~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev-~~Kt~eEV-~~Y~~vFw 156 (304)
T 1ofc_X 91 AEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV-EGKTPEEV-IEYNAVFW 156 (304)
T ss_dssp CCCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS-TTCCHHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh-cCCCHHHH-HHHHHHHH
Confidence 34589887 5677765 47999999999999999984 232233322 36999999 88998865
No 54
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.24 E-value=36 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013054 347 TKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYR 382 (450)
Q Consensus 347 T~~vc~~f~eLR~~Iv~LleLKK~l~k~E~El~~lr 382 (450)
+..+...-++|+..=..+-+|++.++.++.||+++|
T Consensus 41 ~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 41 SEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555567788888889999999999999999886
No 55
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=42.47 E-value=13 Score=30.69 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 013054 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (450)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY~ 171 (450)
-+.||.||-....+-...|+=.|..|++ +-+.||+.|+-+=||.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhc
Confidence 3579999999999999999999999975 4568999999999985
No 56
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=35.81 E-value=24 Score=23.62 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 013054 356 ELRKEILTLLNLQKQLQYKEAEGSSYRDGSY 386 (450)
Q Consensus 356 eLR~~Iv~LleLKK~l~k~E~El~~lr~~~~ 386 (450)
.|.++|.. |||.+..+.+||..|++.|+
T Consensus 6 alkqeiaa---lkkeiaalkfeiaalkqgyy 33 (33)
T 4dzn_A 6 ALKQEIAA---LKKEIAALKFEIAALKQGYY 33 (33)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHcccC
Confidence 45566654 68899999999999987653
No 57
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=32.35 E-value=83 Score=23.98 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=9.3
Q ss_pred HHHHHHHHhCCC
Q 013054 329 RVEQALQELGVN 340 (450)
Q Consensus 329 ~Ie~~L~ELgv~ 340 (450)
-|..+..++|+|
T Consensus 15 yiqsvv~DC~~P 26 (65)
T 2yf2_A 15 YIQSVVSDCHVP 26 (65)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHhcCCc
Confidence 467788899984
No 58
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein structure initiative; HET: 0GY; 1.35A {Sphingomonas paucimobilis} PDB: 4d95_A* 4di8_A* 4di9_A* 4d9d_A 4dia_A 2qah_A 4d8l_A
Probab=27.22 E-value=74 Score=30.39 Aligned_cols=63 Identities=10% Similarity=-0.000 Sum_probs=44.7
Q ss_pred CCCcccccCCCccccCCHHHHHhhcC----------CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHH
Q 013054 101 DYSFAKYNKSVDVVKYTDEEYEKYLT----------DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEEL 165 (450)
Q Consensus 101 ~y~FaKfN~~v~ip~ytdeEY~~~L~----------d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDL 165 (450)
.||+.. +-...-..||-|+|...|. ...|...+++||.+.|+++.=||+-|+ -.+...+.++|
T Consensus 40 ~~p~~~-~~~~~~~~~~~e~l~~~m~~~GI~~~Vlvq~~~~~~dN~~ll~~l~~~~~r~~Gva-~vdp~~~~~eL 112 (303)
T 4d9a_A 40 QFPFSP-KAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDNAATLDAIARAQGKARGIA-VVDPAIDEAEL 112 (303)
T ss_dssp TSCCCT-TCSCCBCCBCHHHHHHHHHHHTCSEEEEECCGGGTTCCHHHHHHHHHTTTSEEEEE-CCCTTCCHHHH
T ss_pred cCCCCC-CCCCcCCCCCHHHHHHHHHHcCCCeEEEeccccccccHHHHHHHHHhCCCcEEEEE-EeCCCCCHHHH
Confidence 477764 2222235899999988874 456888899999998889988887776 33444566666
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=26.98 E-value=36 Score=34.83 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=44.7
Q ss_pred cccCCHHH---HHhhcCC--CCCCHHHHHHHHHHhhhcCcc-eEEEecCCCCCCCHHHHHHHHHHHHH
Q 013054 113 VVKYTDEE---YEKYLTD--PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGVSR 174 (450)
Q Consensus 113 ip~ytdeE---Y~~~L~d--~~WT~eETdyLfdLc~~fDLR-w~VI~DRy~~~RtvEDLK~RYY~V~~ 174 (450)
...+|+|| -+.+|.. .+||+-+-..++..|..|+-- +--|+.=+++..|+||.+ +|+.|.-
T Consensus 104 ~~~LTeEE~~EKe~LL~eGF~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw 170 (374)
T 2y9y_A 104 SQPLTEEEEKMKADWESEGFTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFW 170 (374)
T ss_dssp CSSSCHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHH
Confidence 44688887 4566654 489999999999999999842 222222233479999999 9998865
No 60
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=24.78 E-value=24 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013054 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (450)
Q Consensus 328 K~Ie~~L~ELgv~~kP~mPT~~vc~~f~eLR~~ 360 (450)
..+...|.+.||.+-. |.|.+-|..||.|..+
T Consensus 105 p~~~~~L~~~GIgvE~-M~T~aA~rTyNiL~~E 136 (150)
T 3cpk_A 105 PEQVRPLLAMGVGVEA-MDTQAAARTYNILMAE 136 (150)
T ss_dssp HHHHHHHHTTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4577889999998765 9999999999999764
No 61
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=21.51 E-value=1.2e+02 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.6
Q ss_pred cceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 013054 147 LRFIVIADRFPSSRTVEELKDRYYGVSRAILI 178 (450)
Q Consensus 147 LRw~VI~DRy~~~RtvEDLK~RYY~V~~~l~~ 178 (450)
|+.+++|||-..+-.+|.||.=-+.|..+++.
T Consensus 23 LqliLa~dR~~~p~~l~~lk~eil~VIskYv~ 54 (80)
T 3ku7_A 23 LKLILAKERTLNLPYMEEMRKEIIAVIQKYTK 54 (80)
T ss_dssp EEEEEEEESSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999954567999999999999999996
No 62
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.48 E-value=1.4e+02 Score=20.06 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013054 353 EHLELRKEILTLLNLQKQLQYKEAEGS 379 (450)
Q Consensus 353 ~f~eLR~~Iv~LleLKK~l~k~E~El~ 379 (450)
.-++||+--....+|++.+|++|.-++
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346888888889999999999997765
No 63
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=20.39 E-value=78 Score=26.71 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=23.3
Q ss_pred hhcccchhHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013054 318 ASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAE 353 (450)
Q Consensus 318 ~~~~~G~k~~K~Ie~~L~ELgv~~kP~mPT~~vc~~ 353 (450)
.|.+...+++|-|--+|.|||||.. +..|.+.
T Consensus 29 ~P~sMdESTAKGifKyL~elGvPas----~~dv~aR 60 (115)
T 2es9_A 29 VPHSMDESTAKGILKYLHDLGVPVS----PEVVVAR 60 (115)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCC----HHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHcCCCCC----HHHHHHh
Confidence 4455556789999999999999854 4555443
Done!