Query 013055
Match_columns 450
No_of_seqs 289 out of 1050
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:22:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.3E-29 4.3E-34 206.4 4.8 63 247-309 12-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.4E-29 4.6E-34 207.1 4.5 62 247-308 15-77 (78)
3 2ayd_A WRKY transcription fact 99.9 2.9E-23 1E-27 169.1 2.7 43 407-449 1-43 (76)
4 1wj2_A Probable WRKY transcrip 99.9 3E-23 1E-27 169.7 1.9 43 407-449 4-46 (78)
5 2rpr_A Flywch-type zinc finger 62.2 3.2 0.00011 33.3 1.8 49 248-308 23-74 (87)
6 1cz6_A Protein (androctonin); 41.1 7.3 0.00025 25.2 0.5 7 442-448 16-22 (26)
7 1qxn_A SUD, sulfide dehydrogen 30.4 16 0.00053 31.0 1.0 25 416-440 109-134 (137)
8 1xiw_B T-cell surface glycopro 30.1 6.2 0.00021 31.5 -1.4 27 421-447 17-53 (79)
9 1odh_A MGCM1; transcription fa 19.9 59 0.002 30.0 2.8 20 291-310 140-159 (174)
10 3ed7_A Tsase, TS, thymidylate 16.3 26 0.00088 34.8 -0.5 11 422-432 117-127 (295)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1.3e-29 Score=206.45 Aligned_cols=63 Identities=56% Similarity=1.088 Sum_probs=59.5
Q ss_pred CCCCCCccccccCcccCCCCCCCCCcccccCCCCccccceeecc-CCCEEEEeeCCCCCCCCCC
Q 013055 247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPPQ 309 (450)
Q Consensus 247 ~~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~ 309 (450)
.+.+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 45789999999999999999999999999999999999999986 7899999999999999985
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.4e-29 Score=207.14 Aligned_cols=62 Identities=56% Similarity=1.061 Sum_probs=58.8
Q ss_pred CCCCCCccccccCcccCCCCCCCCCcccccCCCCccccceeecc-CCCEEEEeeCCCCCCCCC
Q 013055 247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP 308 (450)
Q Consensus 247 ~~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p 308 (450)
.+.+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|
T Consensus 15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 45789999999999999999999999999999999999999975 789999999999999988
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.86 E-value=2.9e-23 Score=169.07 Aligned_cols=43 Identities=58% Similarity=1.068 Sum_probs=41.2
Q ss_pred CeEEeeeccccccCCCcchhhhccccccCCCCCCcceeecccc
Q 013055 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVV 449 (450)
Q Consensus 407 prvvVqT~sevdildDGyrWRKYGQK~VKGnp~PRSYYrCT~~ 449 (450)
.||+|+|.++++++||||+|||||||.||||+|||+|||||++
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~ 43 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP 43 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECST
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCC
Confidence 3899999999999999999999999999999999999999974
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.86 E-value=3e-23 Score=169.69 Aligned_cols=43 Identities=77% Similarity=1.137 Sum_probs=38.2
Q ss_pred CeEEeeeccccccCCCcchhhhccccccCCCCCCcceeecccc
Q 013055 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVV 449 (450)
Q Consensus 407 prvvVqT~sevdildDGyrWRKYGQK~VKGnp~PRSYYrCT~~ 449 (450)
.+|+|+|.+|++++||||+|||||||.||||+|||+|||||++
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~ 46 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP 46 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcC
Confidence 4799999999999999999999999999999999999999974
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=62.23 E-value=3.2 Score=33.26 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCCCccccccCcccCCCCCCCCCcccccC---CCCccccceeeccCCCEEEEeeCCCCCCCCC
Q 013055 248 PADDPYNWRKYGQKHVKGSEFPRSYYKCTH---PNCPVKKKVERSLDGQVTEIIYKGQHNHPPP 308 (450)
Q Consensus 248 ~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~---~~C~akK~Ver~~dg~i~~i~Y~G~HnH~~p 308 (450)
...|||...+--+ . ..+.|.+|+. .+|.|+=... .++ |+..+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~--~~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQ--GHR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEE--TTE----EEECSCCSSCCC
T ss_pred EEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEc--CCC----EECCCCcCCCCc
Confidence 4568987765321 1 2368999996 4799974333 222 446789999754
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=41.06 E-value=7.3 Score=25.20 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=5.8
Q ss_pred ceeeccc
Q 013055 442 SYIFSLV 448 (450)
Q Consensus 442 SYYrCT~ 448 (450)
-|||||+
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 4999986
No 7
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=30.44 E-value=16 Score=30.96 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.8
Q ss_pred ccccCCCcch-hhhccccccCCCCCC
Q 013055 416 EVDLLDDGYR-WRKYGQKVVKGNPYP 440 (450)
Q Consensus 416 evdildDGyr-WRKYGQK~VKGnp~P 440 (450)
+|-+++.||. |++.|-.+++++++-
T Consensus 109 ~v~~l~GG~~~W~~~g~p~~~~~~~~ 134 (137)
T 1qxn_A 109 TIYNSEGGMDKWLEEGLPSLDRSHHH 134 (137)
T ss_dssp CEEEESSCHHHHHHTTCCEECCCCCC
T ss_pred ceEEEcCcHHHHHHCCCCcccccccc
Confidence 3456889996 999999999999863
No 8
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=30.14 E-value=6.2 Score=31.52 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=19.5
Q ss_pred CCcchhhhccccc--------cCC--CCCCcceeecc
Q 013055 421 DDGYRWRKYGQKV--------VKG--NPYPRSYIFSL 447 (450)
Q Consensus 421 dDGyrWRKYGQK~--------VKG--np~PRSYYrCT 447 (450)
.++++|-|-|... +.| ..-||.||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 6779999988752 332 23399999994
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=19.93 E-value=59 Score=29.98 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=13.7
Q ss_pred CCCEEEEeeCCCCCCCCCCC
Q 013055 291 DGQVTEIIYKGQHNHPPPQS 310 (450)
Q Consensus 291 dg~i~~i~Y~G~HnH~~p~~ 310 (450)
+|......-||.|+|++|..
T Consensus 140 ~~~~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 140 DGRFIFFQSKGEHDHPRPET 159 (174)
T ss_dssp CSSBEEEEEECCCCSCCCCC
T ss_pred cCCEEEEecccccCCCCCCC
Confidence 44333344579999999964
No 10
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=16.26 E-value=26 Score=34.85 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=9.0
Q ss_pred Ccchhhhcccc
Q 013055 422 DGYRWRKYGQK 432 (450)
Q Consensus 422 DGyrWRKYGQK 432 (450)
=|++||.+|-+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 38899999865
Done!