Query 013056
Match_columns 450
No_of_seqs 376 out of 2938
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 99.9 1.3E-21 2.8E-26 189.2 24.2 246 177-442 73-319 (319)
2 cd00116 LRR_RI Leucine-rich re 99.9 2.2E-21 4.8E-26 187.6 23.4 261 164-446 25-294 (319)
3 KOG1909 Ran GTPase-activating 99.9 1.3E-20 2.8E-25 172.8 16.9 262 165-443 33-311 (382)
4 KOG1909 Ran GTPase-activating 99.8 1.1E-20 2.3E-25 173.4 13.8 251 179-445 86-344 (382)
5 PLN00113 leucine-rich repeat r 99.8 1.4E-20 3E-25 208.3 11.2 245 148-445 118-371 (968)
6 PLN00113 leucine-rich repeat r 99.8 2E-20 4.4E-25 207.0 11.1 232 163-448 119-350 (968)
7 KOG4194 Membrane glycoprotein 99.8 6.1E-21 1.3E-25 185.0 -3.5 228 166-444 201-430 (873)
8 KOG4194 Membrane glycoprotein 99.8 1.4E-20 3E-25 182.5 -2.6 240 163-444 150-406 (873)
9 KOG0444 Cytoskeletal regulator 99.7 9.6E-20 2.1E-24 177.9 -1.7 228 165-450 81-311 (1255)
10 KOG0444 Cytoskeletal regulator 99.7 6.3E-19 1.4E-23 172.3 -4.0 218 166-441 130-373 (1255)
11 KOG4341 F-box protein containi 99.7 3.4E-17 7.3E-22 153.7 7.0 50 15-99 67-116 (483)
12 COG5238 RNA1 Ran GTPase-activa 99.6 2.2E-14 4.8E-19 127.8 17.3 252 178-445 23-287 (388)
13 COG5238 RNA1 Ran GTPase-activa 99.6 5.7E-14 1.2E-18 125.2 15.6 233 201-448 19-260 (388)
14 KOG0472 Leucine-rich repeat pr 99.6 3.1E-16 6.7E-21 146.4 1.0 94 339-443 433-541 (565)
15 PRK15370 E3 ubiquitin-protein 99.6 1.4E-15 3.1E-20 159.7 4.5 105 306-444 325-429 (754)
16 KOG0472 Leucine-rich repeat pr 99.5 2.2E-17 4.9E-22 153.9 -10.1 216 168-442 74-309 (565)
17 KOG4237 Extracellular matrix p 99.5 1E-15 2.2E-20 142.7 -0.2 239 163-443 68-359 (498)
18 KOG2120 SCF ubiquitin ligase, 99.5 1.2E-14 2.6E-19 131.0 5.5 200 185-427 185-388 (419)
19 PRK15387 E3 ubiquitin-protein 99.5 1.2E-14 2.5E-19 152.2 5.7 210 163-447 243-462 (788)
20 KOG0618 Serine/threonine phosp 99.5 1.9E-15 4E-20 154.4 -1.7 236 163-441 220-487 (1081)
21 KOG0618 Serine/threonine phosp 99.5 4.3E-15 9.2E-20 151.8 0.2 211 163-412 242-487 (1081)
22 KOG4308 LRR-containing protein 99.5 5.7E-15 1.2E-19 147.7 1.1 241 187-446 89-334 (478)
23 PRK15370 E3 ubiquitin-protein 99.5 4.1E-14 8.8E-19 148.8 7.0 203 163-444 200-402 (754)
24 PRK15387 E3 ubiquitin-protein 99.4 1.8E-13 3.9E-18 143.4 7.2 94 163-291 223-316 (788)
25 KOG4308 LRR-containing protein 99.4 5.3E-14 1.2E-18 140.8 -0.1 215 215-447 89-307 (478)
26 KOG3207 Beta-tubulin folding c 99.4 1.6E-13 3.4E-18 129.9 2.4 191 182-415 143-340 (505)
27 KOG0617 Ras suppressor protein 99.4 2.6E-15 5.6E-20 124.9 -9.4 157 211-415 31-187 (264)
28 KOG4237 Extracellular matrix p 99.3 2.6E-13 5.7E-18 126.8 1.1 214 185-447 67-339 (498)
29 PLN03210 Resistant to P. syrin 99.3 2.6E-12 5.6E-17 143.7 8.7 102 163-287 590-691 (1153)
30 KOG3207 Beta-tubulin folding c 99.3 1.3E-12 2.8E-17 123.8 4.2 232 173-445 109-341 (505)
31 KOG0617 Ras suppressor protein 99.3 7.2E-15 1.6E-19 122.3 -10.2 184 179-413 27-211 (264)
32 PLN03210 Resistant to P. syrin 99.2 2.7E-11 5.8E-16 135.7 10.6 81 163-256 612-692 (1153)
33 KOG2120 SCF ubiquitin ligase, 99.2 1.4E-11 3.1E-16 111.4 5.5 160 214-412 186-349 (419)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-11 3.9E-16 106.0 2.4 129 276-437 18-147 (175)
35 PF14580 LRR_9: Leucine-rich r 99.1 8E-11 1.7E-15 101.9 3.4 131 211-376 17-147 (175)
36 KOG1259 Nischarin, modulator o 99.0 2.9E-11 6.2E-16 109.6 -2.3 131 277-445 284-414 (490)
37 KOG0532 Leucine-rich repeat (L 98.9 1.7E-11 3.8E-16 119.7 -6.0 137 269-445 113-249 (722)
38 KOG1259 Nischarin, modulator o 98.9 2.6E-10 5.6E-15 103.5 1.7 191 179-415 208-413 (490)
39 KOG4341 F-box protein containi 98.9 2.1E-09 4.5E-14 101.8 7.0 229 163-427 191-453 (483)
40 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.3E-14 107.3 4.9 60 341-415 232-291 (394)
41 COG4886 Leucine-rich repeat (L 98.8 3.2E-09 6.9E-14 105.9 4.5 197 189-447 97-294 (394)
42 PLN03150 hypothetical protein; 98.7 3.9E-08 8.4E-13 103.2 7.8 108 308-442 420-527 (623)
43 KOG0532 Leucine-rich repeat (L 98.6 8.6E-10 1.9E-14 108.1 -5.7 193 165-411 78-270 (722)
44 PLN03150 hypothetical protein; 98.5 2.4E-07 5.3E-12 97.2 8.2 85 247-355 420-504 (623)
45 KOG1859 Leucine-rich repeat pr 98.5 1.2E-08 2.6E-13 102.8 -2.4 129 246-415 165-293 (1096)
46 KOG2982 Uncharacterized conser 98.5 2.5E-07 5.3E-12 84.4 5.6 65 341-415 199-263 (418)
47 KOG0531 Protein phosphatase 1, 98.5 3.3E-08 7.1E-13 99.1 -0.1 234 167-446 77-321 (414)
48 KOG2982 Uncharacterized conser 98.4 1.9E-07 4E-12 85.1 4.4 40 341-383 224-263 (418)
49 PF13855 LRR_8: Leucine rich r 98.4 4.7E-08 1E-12 69.5 0.3 59 342-413 2-61 (61)
50 KOG3665 ZYG-1-like serine/thre 98.4 1.4E-06 3E-11 91.6 10.3 151 245-423 122-272 (699)
51 KOG1859 Leucine-rich repeat pr 98.4 3.1E-08 6.8E-13 99.9 -2.0 128 278-443 165-292 (1096)
52 KOG1947 Leucine rich repeat pr 98.4 1.2E-06 2.6E-11 89.5 9.4 92 182-287 211-305 (482)
53 PF13855 LRR_8: Leucine rich r 98.3 1.6E-07 3.5E-12 66.7 1.4 61 306-381 1-61 (61)
54 KOG1947 Leucine rich repeat pr 98.3 1.5E-06 3.2E-11 88.8 9.0 220 183-442 186-439 (482)
55 KOG0531 Protein phosphatase 1, 98.3 3.7E-08 8E-13 98.7 -4.4 36 403-444 234-269 (414)
56 KOG3665 ZYG-1-like serine/thre 98.2 3.4E-06 7.4E-11 88.7 8.3 143 276-446 121-266 (699)
57 KOG4579 Leucine-rich repeat (L 98.1 5.7E-07 1.2E-11 72.9 -0.0 137 277-447 27-163 (177)
58 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 54.1 3.3 37 342-383 2-38 (44)
59 KOG4579 Leucine-rich repeat (L 98.0 1.2E-06 2.5E-11 71.1 -0.7 111 245-383 27-137 (177)
60 KOG4658 Apoptotic ATPase [Sign 97.9 7.8E-06 1.7E-10 88.3 3.2 111 183-317 543-653 (889)
61 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.3E-10 51.6 3.8 38 369-415 1-38 (44)
62 PRK15386 type III secretion pr 97.6 0.00012 2.6E-09 71.5 6.6 139 209-412 48-188 (426)
63 KOG4658 Apoptotic ATPase [Sign 97.6 4.5E-05 9.8E-10 82.5 3.6 152 185-377 523-676 (889)
64 KOG2123 Uncharacterized conser 97.4 1.8E-05 4E-10 71.7 -1.2 106 276-407 18-123 (388)
65 KOG1644 U2-associated snRNP A' 97.3 0.00029 6.2E-09 61.2 4.8 108 278-411 43-150 (233)
66 PRK15386 type III secretion pr 97.3 0.00043 9.4E-09 67.7 5.9 141 179-380 46-188 (426)
67 KOG2739 Leucine-rich acidic nu 97.2 8.8E-05 1.9E-09 67.0 0.6 88 306-415 43-130 (260)
68 KOG2123 Uncharacterized conser 97.1 5.6E-05 1.2E-09 68.7 -2.5 105 305-436 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00035 7.5E-09 63.2 0.9 65 275-354 63-129 (260)
70 KOG1644 U2-associated snRNP A' 96.8 0.00084 1.8E-08 58.4 2.9 128 279-439 21-149 (233)
71 KOG4242 Predicted myosin-I-bin 96.8 0.0019 4.1E-08 63.0 5.5 234 185-444 214-482 (553)
72 KOG3864 Uncharacterized conser 96.8 0.00048 1E-08 59.9 1.0 53 334-389 118-172 (221)
73 smart00368 LRR_RI Leucine rich 96.7 0.0024 5.3E-08 37.1 3.5 22 369-390 2-23 (28)
74 smart00368 LRR_RI Leucine rich 96.6 0.0038 8.1E-08 36.3 3.5 26 401-426 2-27 (28)
75 PF13516 LRR_6: Leucine Rich r 96.4 0.002 4.3E-08 35.9 1.7 21 369-389 2-22 (24)
76 PF12937 F-box-like: F-box-lik 96.1 0.0051 1.1E-07 40.7 2.7 36 20-80 1-36 (47)
77 PF13516 LRR_6: Leucine Rich r 95.9 0.0054 1.2E-07 34.1 1.7 23 400-422 1-23 (24)
78 KOG3864 Uncharacterized conser 95.7 0.016 3.6E-07 50.6 4.5 83 186-287 102-186 (221)
79 KOG3735 Tropomodulin and leiom 95.3 0.025 5.4E-07 53.1 4.8 50 341-390 227-276 (353)
80 KOG4242 Predicted myosin-I-bin 94.2 0.051 1.1E-06 53.4 3.9 209 210-450 162-374 (553)
81 KOG3735 Tropomodulin and leiom 93.9 0.18 3.8E-06 47.6 6.8 101 203-312 188-289 (353)
82 smart00367 LRR_CC Leucine-rich 93.7 0.074 1.6E-06 30.1 2.6 21 401-421 2-23 (26)
83 smart00367 LRR_CC Leucine-rich 93.7 0.062 1.4E-06 30.4 2.2 21 369-389 2-23 (26)
84 PF00646 F-box: F-box domain; 93.5 0.068 1.5E-06 35.3 2.5 38 18-80 1-38 (48)
85 PF13504 LRR_7: Leucine rich r 91.8 0.087 1.9E-06 26.5 0.9 11 371-381 3-13 (17)
86 PF00560 LRR_1: Leucine Rich R 90.2 0.12 2.5E-06 28.0 0.5 15 432-447 2-16 (22)
87 PF13306 LRR_5: Leucine rich r 88.1 0.42 9.2E-06 38.8 2.8 13 366-378 78-90 (129)
88 smart00256 FBOX A Receptor for 87.3 0.36 7.9E-06 30.3 1.5 18 23-40 1-18 (41)
89 PF13306 LRR_5: Leucine rich r 85.1 0.94 2E-05 36.7 3.3 101 244-378 11-112 (129)
90 KOG3763 mRNA export factor TAP 84.6 1.4 3.1E-05 44.5 4.8 65 341-415 218-284 (585)
91 smart00369 LRR_TYP Leucine-ric 79.5 1.7 3.7E-05 24.3 1.9 15 369-383 2-16 (26)
92 smart00370 LRR Leucine-rich re 79.5 1.7 3.7E-05 24.3 1.9 15 369-383 2-16 (26)
93 KOG3763 mRNA export factor TAP 78.7 5.4 0.00012 40.6 6.3 92 206-312 211-307 (585)
94 smart00365 LRR_SD22 Leucine-ri 75.9 2.5 5.4E-05 23.9 1.9 15 369-383 2-16 (26)
95 KOG0473 Leucine-rich repeat pr 69.2 0.086 1.9E-06 47.2 -7.7 86 274-382 39-124 (326)
96 PF06881 Elongin_A: RNA polyme 65.7 15 0.00032 29.1 5.0 65 19-100 3-70 (109)
97 KOG0473 Leucine-rich repeat pr 63.1 0.12 2.7E-06 46.3 -8.0 86 305-416 41-126 (326)
98 smart00364 LRR_BAC Leucine-ric 56.6 4.6 0.0001 22.8 0.4 14 402-415 3-16 (26)
99 KOG2997 F-box protein FBX9 [Ge 49.4 6.5 0.00014 37.1 0.4 71 17-99 104-184 (366)
100 PF13013 F-box-like_2: F-box-l 31.4 36 0.00077 27.0 2.0 21 20-40 22-42 (109)
101 KOG0281 Beta-TrCP (transducin 26.5 47 0.001 31.8 2.2 21 20-40 75-99 (499)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.89 E-value=1.3e-21 Score=189.24 Aligned_cols=246 Identities=25% Similarity=0.251 Sum_probs=193.0
Q ss_pred hhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCC
Q 013056 177 ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 256 (450)
Q Consensus 177 ~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~ 256 (450)
++..+..+++|+.|++++|.+.......+..+... ++|++|++++|.+++.+...+...+... .++|+.|++++|.
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~ 148 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC---CCCceEEEcCCCc
Confidence 44556678899999999998765555555555555 7799999999999988888777766653 2789999999999
Q ss_pred CCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056 257 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336 (450)
Q Consensus 257 i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 336 (450)
++..+. ..+...+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++. +...++..+.
T Consensus 149 l~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~----~~~~l~~~~~- 218 (319)
T cd00116 149 LEGASC----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDE----GASALAETLA- 218 (319)
T ss_pred CCchHH----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChH----HHHHHHHHhc-
Confidence 986322 2566677788899999999999998777777766644 48999999999998752 1222333333
Q ss_pred CCCCCceeEEEccCCCCChhhHHHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 337 GKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
.+++|+.|++++|.+++.++..++..+. ..+.|++|++++|.+++.|...+.. .+..+++|+++++++|.+++
T Consensus 219 --~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 219 --SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred --ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCCCCcH
Confidence 5689999999999999888777776654 3678999999999999988887764 45556899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056 416 RGVSQLLDTLSTLRRPPTSLSIADNNL 442 (450)
Q Consensus 416 ~g~~~l~~~l~~l~~~L~~L~L~~N~l 442 (450)
.|+..+++.+......|++|++.+|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999887536699999999875
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.89 E-value=2.2e-21 Score=187.58 Aligned_cols=261 Identities=21% Similarity=0.238 Sum_probs=200.6
Q ss_pred hhhcccccCcc-----hhhhHhhhcCCCccEEEeecccCh---HHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHH
Q 013056 164 ARCLRLQNALC-----VEETCQLLRESKLQSLVLRWIRFE---EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 235 (450)
Q Consensus 164 l~~l~L~~~~~-----~~~~~~l~~~~~L~~L~Ls~n~~~---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 235 (450)
++.+.+.++.+ ..+...+...+++++|+++++... ..+..+ ...+..+++|+.|++++|.+....+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL-LQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH-HHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 33444555544 334455667788999999998855 223333 333456899999999999998766666654
Q ss_pred HHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc
Q 013056 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 314 (450)
Q Consensus 236 ~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls 314 (450)
... .++|++|++++|.+++.+.. .+...+..+ ++|++|++++|.+++.++..+...+ ..+.+|++|+++
T Consensus 104 l~~-----~~~L~~L~ls~~~~~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~ 173 (319)
T cd00116 104 LLR-----SSSLQELKLNNNGLGDRGLR----LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLA 173 (319)
T ss_pred Hhc-----cCcccEEEeeCCccchHHHH----HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECc
Confidence 311 14599999999999863332 556667777 8999999999999987777666654 346899999999
Q ss_pred CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHH
Q 013056 315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 394 (450)
Q Consensus 315 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~ 394 (450)
+|.+++. +...++..+. .+++|+.|++++|.+++.++..++..+..+++|++|++++|.+++.++..++..+
T Consensus 174 ~n~l~~~----~~~~l~~~l~---~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~- 245 (319)
T cd00116 174 NNGIGDA----GIRALAEGLK---ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL- 245 (319)
T ss_pred CCCCchH----HHHHHHHHHH---hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH-
Confidence 9998852 1122334444 4589999999999999999989999999999999999999999998888887532
Q ss_pred hhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 395 QASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 395 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
....+.|++|++++|.+++.|...+++.+..+ .+|+++++++|.+++.+
T Consensus 246 --~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 246 --LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEG 294 (319)
T ss_pred --hccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHH
Confidence 22458999999999999999999999999885 56999999999999764
No 3
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-20 Score=172.82 Aligned_cols=262 Identities=19% Similarity=0.213 Sum_probs=207.1
Q ss_pred hhcccccCcchhh-----hHhhhcCCCccEEEeecccCh---HHHH----HHHHHHHhcCCCccEEEccCCCCChhHHHH
Q 013056 165 RCLRLQNALCVEE-----TCQLLRESKLQSLVLRWIRFE---EHVQ----ALCKLLIQNSETLASLEFLHCKLSPSFVEG 232 (450)
Q Consensus 165 ~~l~L~~~~~~~~-----~~~l~~~~~L~~L~Ls~n~~~---~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 232 (450)
..++|+++.+... ...+.+.+.|+..++|+-... ..++ .+.++ ...+++|+.||||.|-|...+++.
T Consensus 33 ~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a-L~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 33 TKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKA-LLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred EEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHH-HhcCCceeEeeccccccCccchHH
Confidence 4456666666553 234456688999888876522 2222 22223 346679999999999999999999
Q ss_pred HHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHH-----HHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCC
Q 013056 233 ICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVEL-----VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS 307 (450)
Q Consensus 233 l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l-----~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~ 307 (450)
+...+.+ +..|++|.|.+|.+...+...+..++ .+..++-+.|+++..+.|.+.+.+...++..+.. .+.
T Consensus 112 l~~ll~s----~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~-~~~ 186 (382)
T KOG1909|consen 112 LEELLSS----CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS-HPT 186 (382)
T ss_pred HHHHHHh----ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh-ccc
Confidence 8888777 69999999999999887666544433 2334556789999999999998888888887655 489
Q ss_pred CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHH
Q 013056 308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR 387 (450)
Q Consensus 308 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~ 387 (450)
|+.+.++.|.|.. .+...+..++. +|++|++|||+.|-++..|...+++.+..+++|++|++++|.+.+.|+.
T Consensus 187 leevr~~qN~I~~----eG~~al~eal~---~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 187 LEEVRLSQNGIRP----EGVTALAEALE---HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred cceEEEecccccC----chhHHHHHHHH---hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 9999999999873 34444555666 7799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056 388 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443 (450)
Q Consensus 388 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~ 443 (450)
++..++.. ..++|+.|.+.+|.|+..++..++.++.. .+.|..|+|++|.++
T Consensus 260 a~~~al~~---~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AFVDALKE---SAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhc---cCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccccc
Confidence 99986533 35899999999999999999999999988 556999999999994
No 4
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-20 Score=173.36 Aligned_cols=251 Identities=21% Similarity=0.203 Sum_probs=163.5
Q ss_pred HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc-----ccCCCCeeEEEcC
Q 013056 179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK-----RKRIHKIENLSID 253 (450)
Q Consensus 179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-----~~~~~~L~~L~L~ 253 (450)
..+..+++|++|+||.|-+.......+..++.++..|++|.|.+|.++..+-..+..+|... .....+|+.+..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34456667777777777755555555556666677777777777777777666665533221 1124567777777
Q ss_pred CCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHh
Q 013056 254 ISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS 333 (450)
Q Consensus 254 ~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 333 (450)
+|++.+.+.. .++..+...+.|+.+.++.|.|...++..++.++.. +++|+.|||..|.++ ..+...++.+
T Consensus 166 rNrlen~ga~----~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft----~egs~~Laka 236 (382)
T KOG1909|consen 166 RNRLENGGAT----ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFT----LEGSVALAKA 236 (382)
T ss_pred ccccccccHH----HHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhh----hHHHHHHHHH
Confidence 7777775555 566666667777777777777777777666666654 577777777777766 3344445666
Q ss_pred hhCCCCCCceeEEEccCCCCChhhHHHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056 334 LGAGKSLQSLRLLNLRGNNLCKADARDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 412 (450)
Q Consensus 334 l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 412 (450)
++.+ ++|+.|+++.|.+...|+.++..++. ..|+|+.|.+++|.|+.+|+..+.-. ....+.|..|+|++|.
T Consensus 237 L~s~---~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~----~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSW---PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC----MAEKPDLEKLNLNGNR 309 (382)
T ss_pred hccc---chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH----HhcchhhHHhcCCccc
Confidence 6643 67777777777777777777777665 45777777777777777777666532 3335777777777777
Q ss_pred C--ChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 413 L--SGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 413 l--~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+ .+.++..+...+.....-+...+.+.|.+.++
T Consensus 310 l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~e 344 (382)
T KOG1909|consen 310 LGEKDEGIDEIASKFDTAHVLLEDIDDSEEELERE 344 (382)
T ss_pred ccccchhHHHHHHhcccccccchhhchhHHHHHhh
Confidence 7 66677777666633222255555555555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=1.4e-20 Score=208.29 Aligned_cols=245 Identities=22% Similarity=0.212 Sum_probs=128.6
Q ss_pred hccccccceecccc--------cchhhcccccCcch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEE
Q 013056 148 CDYSKLSYHCQQFG--------HYARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASL 218 (450)
Q Consensus 148 ~~l~~L~l~~~~~~--------~~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L 218 (450)
.+|+.|+++.+.+. ..++.+++++|.+. .++..+.++++|++|++++|.+....+.. +.++++|++|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L 193 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFL 193 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh----hhhCcCCCee
Confidence 45555555544221 14566666666654 34455666777777777777643332222 3456677777
Q ss_pred EccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHH
Q 013056 219 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 298 (450)
Q Consensus 219 ~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 298 (450)
++++|.++...+..+.. +.+|++|++++|.+++ .++..++.+++|++|++++|.+++..+..+
T Consensus 194 ~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l- 256 (968)
T PLN00113 194 TLASNQLVGQIPRELGQ--------MKSLKWIYLGYNNLSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL- 256 (968)
T ss_pred eccCCCCcCcCChHHcC--------cCCccEEECcCCccCC--------cCChhHhcCCCCCEEECcCceeccccChhH-
Confidence 77777666554444433 4666666666666655 344455566666666666666655444433
Q ss_pred HHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCC
Q 013056 299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD 378 (450)
Q Consensus 299 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 378 (450)
..+++|++|++++|.+.+..| ..+. .+++|+.|++++|.++. .+|..+..+++|+.|++++
T Consensus 257 ----~~l~~L~~L~L~~n~l~~~~p--------~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 257 ----GNLKNLQYLFLYQNKLSGPIP--------PSIF---SLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFS 317 (968)
T ss_pred ----hCCCCCCEEECcCCeeeccCc--------hhHh---hccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCC
Confidence 235566666666666554333 3333 33455555555555543 2444455555555555555
Q ss_pred CCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 379 NTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 379 N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
|.++.. .| ..+..+++|+.|++++|.++.. ++..+..+ .+|+.|++++|.+++.
T Consensus 318 n~~~~~-----~~---~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~-~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 318 NNFTGK-----IP---VALTSLPRLQVLQLWSNKFSGE----IPKNLGKH-NNLTVLDLSTNNLTGE 371 (968)
T ss_pred CccCCc-----CC---hhHhcCCCCCEEECcCCCCcCc----CChHHhCC-CCCcEEECCCCeeEee
Confidence 555432 22 2233444555555555554432 33333332 2245555555444433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=2e-20 Score=207.02 Aligned_cols=232 Identities=22% Similarity=0.241 Sum_probs=174.5
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.+++++|.+..... ...+++|++|+|++|.+....+.. +.++++|+.|++++|.+....+..+..
T Consensus 119 ~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~~~~------- 186 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTN------- 186 (968)
T ss_pred CCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChH----HhcCCCCCEEECccCcccccCChhhhh-------
Confidence 55667777776643222 134677888888888754333322 467788888888888887666666654
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+.+|++|++++|.++. .++..++.+++|++|+|++|.+++..+..+ ..+++|++|++++|.+.+..
T Consensus 187 -l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 187 -LTSLEFLTLASNQLVG--------QIPRELGQMKSLKWIYLGYNNLSGEIPYEI-----GGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred -CcCCCeeeccCCCCcC--------cCChHHcCcCCccEEECcCCccCCcCChhH-----hcCCCCCEEECcCceecccc
Confidence 6888888888888877 566777888889999999888887666665 34788999999999887654
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
| ..++ .+++|+.|++++|.++. .+|..+..+++|++|++++|.++.. .| ..+..+++
T Consensus 253 p--------~~l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p---~~~~~l~~ 309 (968)
T PLN00113 253 P--------SSLG---NLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSGE-----IP---ELVIQLQN 309 (968)
T ss_pred C--------hhHh---CCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeeccC-----CC---hhHcCCCC
Confidence 4 5555 56889999999998876 4777888889999999999988754 44 45677789
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
|++|++++|.++.. ++..+..+.. |+.|++++|.+++.+|.
T Consensus 310 L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 310 LEILHLFSNNFTGK----IPVALTSLPR-LQVLQLWSNKFSGEIPK 350 (968)
T ss_pred CcEEECCCCccCCc----CChhHhcCCC-CCEEECcCCCCcCcCCh
Confidence 99999999998875 5666777544 99999999999877663
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=6.1e-21 Score=184.96 Aligned_cols=228 Identities=24% Similarity=0.211 Sum_probs=148.7
Q ss_pred hcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056 166 CLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 244 (450)
Q Consensus 166 ~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~ 244 (450)
.++|++|.++.+|...+ ++++|+.|+|..|.+...-... |+++++|+.|.|..|+|....-..+.. +
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt----FqgL~Sl~nlklqrN~I~kL~DG~Fy~--------l 268 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT----FQGLPSLQNLKLQRNDISKLDDGAFYG--------L 268 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh----hcCchhhhhhhhhhcCcccccCcceee--------e
Confidence 34455555555555444 2555555555555532211111 445555555555555554322222222 6
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
.++++|+|+.|++.. .-...+-++++|+.|+||+|.|...-++.+ +-+++|++|+|+.|+|+..-+
T Consensus 269 ~kme~l~L~~N~l~~--------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-----sftqkL~~LdLs~N~i~~l~~- 334 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQA--------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-----SFTQKLKELDLSSNRITRLDE- 334 (873)
T ss_pred cccceeecccchhhh--------hhcccccccchhhhhccchhhhheeecchh-----hhcccceeEeccccccccCCh-
Confidence 788888888888776 333445578899999999998877666665 236889999999999886433
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
+++..+..|++|+|+.|.|+. +.+ ++..+++|++|||++|.|+-. +.. +. .++..++.|
T Consensus 335 ----------~sf~~L~~Le~LnLs~Nsi~~-----l~e~af~~lssL~~LdLr~N~ls~~-IED-aa---~~f~gl~~L 394 (873)
T KOG4194|consen 335 ----------GSFRVLSQLEELNLSHNSIDH-----LAEGAFVGLSSLHKLDLRSNELSWC-IED-AA---VAFNGLPSL 394 (873)
T ss_pred ----------hHHHHHHHhhhhcccccchHH-----HHhhHHHHhhhhhhhcCcCCeEEEE-Eec-ch---hhhccchhh
Confidence 333356788999999998885 555 566888999999999986321 000 11 346778999
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+.|.+.+|+|... -..++..++. |++|||.+|.|-+
T Consensus 395 rkL~l~gNqlk~I----~krAfsgl~~-LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 395 RKLRLTGNQLKSI----PKRAFSGLEA-LEHLDLGDNAIAS 430 (873)
T ss_pred hheeecCceeeec----chhhhccCcc-cceecCCCCccee
Confidence 9999999998885 3455666554 9999999998854
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-20 Score=182.47 Aligned_cols=240 Identities=20% Similarity=0.154 Sum_probs=142.3
Q ss_pred chhhcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++|+.|.+.+++..-+ ...++++|+|++|.+...-.+ .|..+.+|..|.|+.|+|+...+..+..
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~------ 219 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKR------ 219 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhh------
Confidence 45778888888887775544 557888888888885443222 2556668888888888888666666654
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHH----------------HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCC
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVV----------------ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS 305 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~----------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 305 (450)
+++|+.|+|..|+|......++.+ .--..|..+.++++|+|+.|+++...-. +|+ .+
T Consensus 220 --L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----~lf-gL 292 (873)
T KOG4194|consen 220 --LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG----WLF-GL 292 (873)
T ss_pred --cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc----ccc-cc
Confidence 577777777777765421100000 0001223344555555555555431111 111 24
Q ss_pred CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhh
Q 013056 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 385 (450)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g 385 (450)
++|+.|+||+|.|..... .....+++|+.|+|+.|+|+. .-+.++..+..|++|+|++|+|+.
T Consensus 293 t~L~~L~lS~NaI~rih~-----------d~WsftqkL~~LdLs~N~i~~----l~~~sf~~L~~Le~LnLs~Nsi~~-- 355 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHI-----------DSWSFTQKLKELDLSSNRITR----LDEGSFRVLSQLEELNLSHNSIDH-- 355 (873)
T ss_pred chhhhhccchhhhheeec-----------chhhhcccceeEecccccccc----CChhHHHHHHHhhhhcccccchHH--
Confidence 566666666666554333 223355677777777777765 223455666677777777777655
Q ss_pred HHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 386 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 386 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+.. .+|..+++|++|||++|.|+. .+++-+..+..+.. |+.|++.+|+|..
T Consensus 356 ---l~e---~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~-LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 356 ---LAE---GAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPS-LRKLRLTGNQLKS 406 (873)
T ss_pred ---HHh---hHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchh-hhheeecCceeee
Confidence 233 456667888888888887654 23334445555433 8888888888754
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=9.6e-20 Score=177.89 Aligned_cols=228 Identities=22% Similarity=0.203 Sum_probs=163.0
Q ss_pred hhcccccCcchh--hhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 165 RCLRLQNALCVE--ETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 165 ~~l~L~~~~~~~--~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
+.+.+..|.+.. +|..++++..|..||||+|.+...+..+ ...+++-.|+||+|+|... +..++-.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-----E~AKn~iVLNLS~N~IetI-Pn~lfin------ 148 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-----EYAKNSIVLNLSYNNIETI-PNSLFIN------ 148 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-----hhhcCcEEEEcccCccccC-CchHHHh------
Confidence 334444444433 6788888888999999998865554443 4556788899999988743 3333322
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC-Cc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG-GW 321 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~ 321 (450)
+..|-.|+||+|++.. ++..+..+..|++|+|++|.+.......+ ..+++|++|.+++.+-+ +.
T Consensus 149 -LtDLLfLDLS~NrLe~---------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 149 -LTDLLFLDLSNNRLEM---------LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred -hHhHhhhccccchhhh---------cCHHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhhc
Confidence 4667788889888755 67777788888999999988766554444 33677888888887643 22
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
+|.++. .+.+|..+|++.|++.. +|+.+..+++|+.|+||+|.|+.- . ...+...
T Consensus 214 --------~Ptsld---~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL------~---~~~~~W~ 268 (1255)
T KOG0444|consen 214 --------IPTSLD---DLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITEL------N---MTEGEWE 268 (1255)
T ss_pred --------CCCchh---hhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeee------e---ccHHHHh
Confidence 334444 56788888999998885 888888888999999999988762 1 1123336
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccccCC
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANSG 450 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 450 (450)
+|+.|+||.|+++. ++++++++.+ |+.|.+.+|+++=+|--||
T Consensus 269 ~lEtLNlSrNQLt~-----LP~avcKL~k-L~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTV-----LPDAVCKLTK-LTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred hhhhhccccchhcc-----chHHHhhhHH-HHHHHhccCcccccCCccc
Confidence 88888889888888 7888888766 8888888888876665554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=6.3e-19 Score=172.27 Aligned_cols=218 Identities=20% Similarity=0.178 Sum_probs=134.5
Q ss_pred hcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056 166 CLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 244 (450)
Q Consensus 166 ~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~ 244 (450)
.|.|++|.+.++|..++ ++..|-.||||+|+++..++.+ ..+.+|+.|+|++|.+.-.....+.. +
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-----RRL~~LqtL~Ls~NPL~hfQLrQLPs--------m 196 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-----RRLSMLQTLKLSNNPLNHFQLRQLPS--------M 196 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-----HHHhhhhhhhcCCChhhHHHHhcCcc--------c
Confidence 36777888887777776 7777788888888866654442 45567777788877665443333322 3
Q ss_pred CCeeEEEcC-------------------------CCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH
Q 013056 245 HKIENLSID-------------------------ISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 299 (450)
Q Consensus 245 ~~L~~L~L~-------------------------~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 299 (450)
++|+.|.++ .|.+.. +++.+..+++|+.|+||+|+|+.-.. .+..
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~---------vPecly~l~~LrrLNLS~N~iteL~~-~~~~ 266 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI---------VPECLYKLRNLRRLNLSGNKITELNM-TEGE 266 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc---------chHHHhhhhhhheeccCcCceeeeec-cHHH
Confidence 444444444 444433 44444455555555555555544111 1111
Q ss_pred HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056 300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379 (450)
Q Consensus 300 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 379 (450)
..+|++|+||.|+++. +|.++. .++.|+.|.+.+|+++-+| ||..++++.+|+.+..++|
T Consensus 267 -----W~~lEtLNlSrNQLt~---------LP~avc---KL~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 267 -----WENLETLNLSRNQLTV---------LPDAVC---KLTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred -----Hhhhhhhccccchhcc---------chHHHh---hhHHHHHHHhccCcccccC---CccchhhhhhhHHHHhhcc
Confidence 2445555555555553 445555 3355666666666666555 5666666666666666666
Q ss_pred CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056 380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 441 (450)
Q Consensus 380 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~ 441 (450)
.+.- +| +.+..|..|+.|.|++|.+-. +++++.-+.. |+.||+..|+
T Consensus 327 ~LEl------VP---EglcRC~kL~kL~L~~NrLiT-----LPeaIHlL~~-l~vLDlreNp 373 (1255)
T KOG0444|consen 327 KLEL------VP---EGLCRCVKLQKLKLDHNRLIT-----LPEAIHLLPD-LKVLDLRENP 373 (1255)
T ss_pred cccc------Cc---hhhhhhHHHHHhcccccceee-----chhhhhhcCC-cceeeccCCc
Confidence 6543 55 678888999999999998766 7888777555 9999998885
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.69 E-value=3.4e-17 Score=153.66 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=39.0
Q ss_pred CcchhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHhcccCCCCCCCCCcc
Q 013056 15 DVIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVD 94 (450)
Q Consensus 15 ~~~~~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~~~w~~~~~~~~~~~ 94 (450)
+.-.+...||||++.++||.|+...+ +|+++..++|.. ...++..
T Consensus 67 ~~~~~~~~LPpEl~lkvFS~LDtksl-------------------------~r~a~~c~~~n~----------~AlD~~~ 111 (483)
T KOG4341|consen 67 DNNSISRSLPPELLLKVFSMLDTKSL-------------------------CRAAQCCTMWNK----------LALDGSC 111 (483)
T ss_pred hcccccccCCHHHHHHHHHHHhHHHH-------------------------HHHHHHHHHhhh----------hhhcccc
Confidence 44567788999999999999986666 577888889944 4446788
Q ss_pred hHHHH
Q 013056 95 WQQRY 99 (450)
Q Consensus 95 ~~~~~ 99 (450)
|++..
T Consensus 112 ~q~id 116 (483)
T KOG4341|consen 112 WQHID 116 (483)
T ss_pred ceeee
Confidence 88877
No 12
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.62 E-value=2.2e-14 Score=127.76 Aligned_cols=252 Identities=21% Similarity=0.195 Sum_probs=190.1
Q ss_pred hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC---CCChhHHHHHHHHHhccccCCCCeeEEEcCC
Q 013056 178 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC---KLSPSFVEGICRSLCSKRKRIHKIENLSIDI 254 (450)
Q Consensus 178 ~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n---~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~ 254 (450)
...+.....+.+++||+|.+.......+...+.+-++|+..+++.- ...+..+..+.- |.....+|+.|+..+||.
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~-Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM-LLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH-HHHHHhcCCcceeeeccc
Confidence 3445557889999999999666655555555566789999998865 333444444321 112222389999999999
Q ss_pred CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhh--------CCCCCcEEeccCCCCCCcccccC
Q 013056 255 SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE--------ASSSLSILDLSGNSIGGWLSKYD 326 (450)
Q Consensus 255 n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~--------~~~~L~~L~Ls~n~l~~~~~~~~ 326 (450)
|.+.. ..++.+..++++-+.|.+|.|++|.++...-..|..+|++ .-+.|++.+...|++.. ..
T Consensus 102 NAfg~----~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen----gs 173 (388)
T COG5238 102 NAFGS----EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN----GS 173 (388)
T ss_pred cccCc----ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc----Cc
Confidence 99987 4455888999999999999999998877666666655543 24789999999999873 22
Q ss_pred cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 405 (450)
Q Consensus 327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~ 405 (450)
....+..+. +...|+++.+..|.|..+|+..+. ..+..+.+|+.|||..|.++..|-..++ .++...+.|+.
T Consensus 174 ~~~~a~~l~---sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La----~al~~W~~lrE 246 (388)
T COG5238 174 KELSAALLE---SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA----DALCEWNLLRE 246 (388)
T ss_pred HHHHHHHHH---hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH----HHhcccchhhh
Confidence 222333343 447899999999999999987754 4677889999999999999999999887 45777788999
Q ss_pred EEccCCCCChhHHHHHHHHHhcC-CCCCcEEECcCCCCCcc
Q 013056 406 LYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLGRF 445 (450)
Q Consensus 406 L~L~~n~l~~~g~~~l~~~l~~l-~~~L~~L~L~~N~l~~~ 445 (450)
|.+.+|-++..|+..+...+... ..+|..|-..+|.+.+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 99999999999999988887653 34578888888876543
No 13
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.58 E-value=5.7e-14 Score=125.15 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=188.1
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHH---HHHHhhcCCC
Q 013056 201 VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLSSGR 277 (450)
Q Consensus 201 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~---~l~~~l~~~~ 277 (450)
.+.....+.. +..++.++||+|.|+...+..+++.+... .+|+..+++.-.. +.....+++ .+...+.+||
T Consensus 19 vk~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~----~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp 92 (388)
T COG5238 19 VKGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANV----RNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCP 92 (388)
T ss_pred hhHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhh----cceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCC
Confidence 4444444444 68899999999999999999999988874 7788888876432 222223332 3456678899
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCC------CCCCceeEEEccCC
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG------KSLQSLRLLNLRGN 351 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~------~~l~~L~~L~L~~n 351 (450)
.|+..+||+|-++...+..+...+.+ ...|++|.+++|.++ +.++..+..++..+ .+-+.|++.....|
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~-~t~l~HL~l~NnGlG----p~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISS-STDLVHLKLNNNGLG----PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhc-CCCceeEEeecCCCC----ccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 99999999999998888888777655 599999999999988 56666666444332 35588999999999
Q ss_pred CCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCC
Q 013056 352 NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRP 431 (450)
Q Consensus 352 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~ 431 (450)
++........+..+..-.+|+++.+..|.|..+|+.+++- ..+..+.+|+.|||.+|-+|-.|...++.+++..+.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~- 243 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL- 243 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH---HHHHHhCcceeeeccccchhhhhHHHHHHHhcccch-
Confidence 9988777777777877789999999999999999999975 456778999999999999999999999999999554
Q ss_pred CcEEECcCCCCCccccc
Q 013056 432 PTSLSIADNNLGRFCAN 448 (450)
Q Consensus 432 L~~L~L~~N~l~~~~~~ 448 (450)
|+.|.+.+|-++..|.+
T Consensus 244 lrEL~lnDClls~~G~~ 260 (388)
T COG5238 244 LRELRLNDCLLSNEGVK 260 (388)
T ss_pred hhhccccchhhccccHH
Confidence 99999999988877654
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=3.1e-16 Score=146.40 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChh--------hHHHHHHH------H-HhhcCCCCCc
Q 013056 339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD--------GIRSLIPY------F-VQASERCNPL 403 (450)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~--------g~~~l~~~------l-~~~l~~~~~L 403 (450)
.+++|..|+|++|-+.+ +|..++.+..|++||+|.|++... +...+..+ + ...+..+.+|
T Consensus 433 ~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hhhcceeeecccchhhh-----cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 45788899999998886 888888888899999999976441 11111100 0 0236777899
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443 (450)
Q Consensus 404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~ 443 (450)
..|||.+|.|.. ++..+.++ .+|++|++++|+|.
T Consensus 508 ~tLDL~nNdlq~-----IPp~Lgnm-tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQQ-----IPPILGNM-TNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchhh-----CChhhccc-cceeEEEecCCccC
Confidence 999999999887 78899985 55999999999997
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.4e-15 Score=159.72 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=63.3
Q ss_pred CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhh
Q 013056 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 385 (450)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g 385 (450)
++|+.|++++|.++. +|..+. ++|+.|++++|+|+. +|..+. ++|++|+|++|.|+.
T Consensus 325 ~sL~~L~Ls~N~Lt~---------LP~~l~-----~sL~~L~Ls~N~L~~-----LP~~lp--~~L~~LdLs~N~Lt~-- 381 (754)
T PRK15370 325 PGLKTLEAGENALTS---------LPASLP-----PELQVLDVSKNQITV-----LPETLP--PTITTLDVSRNALTN-- 381 (754)
T ss_pred ccceeccccCCcccc---------CChhhc-----CcccEEECCCCCCCc-----CChhhc--CCcCEEECCCCcCCC--
Confidence 456666666666654 223332 577788888887774 555442 578888888887775
Q ss_pred HHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 386 IRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 386 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+| ..+. ..|+.|++++|+|+.. ...++..... ..++..|++.+|+|+.
T Consensus 382 ----LP---~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 382 ----LP---ENLP--AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEYNPFSE 429 (754)
T ss_pred ----CC---HhHH--HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeCCCccH
Confidence 33 1222 3577788888887651 1112222222 2347888888888864
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=2.2e-17 Score=153.95 Aligned_cols=216 Identities=21% Similarity=0.219 Sum_probs=98.4
Q ss_pred ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056 168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI 247 (450)
Q Consensus 168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L 247 (450)
.+..+...+.|+++..+..++.|+.++|++...+.. .....+|..|+.++|.+.. .+..+.+ +..+
T Consensus 74 ~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-----i~s~~~l~~l~~s~n~~~e-l~~~i~~--------~~~l 139 (565)
T KOG0472|consen 74 NVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-----IGSLISLVKLDCSSNELKE-LPDSIGR--------LLDL 139 (565)
T ss_pred EeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-----Hhhhhhhhhhhccccceee-cCchHHH--------Hhhh
Confidence 334444455555555555555555555553333222 1233455555555554431 1222222 3445
Q ss_pred eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056 248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 327 (450)
Q Consensus 248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~ 327 (450)
+.++..+|+++. ++..+.++.+|..+++.+|++....+..+. ++.|++||...|.++.
T Consensus 140 ~dl~~~~N~i~s---------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~------m~~L~~ld~~~N~L~t------- 197 (565)
T KOG0472|consen 140 EDLDATNNQISS---------LPEDMVNLSKLSKLDLEGNKLKALPENHIA------MKRLKHLDCNSNLLET------- 197 (565)
T ss_pred hhhhcccccccc---------CchHHHHHHHHHHhhccccchhhCCHHHHH------HHHHHhcccchhhhhc-------
Confidence 555555555544 333444445555555555555443333321 3445555555554443
Q ss_pred ccHHHhhh-------------------CCCCCCceeEEEccCCCCChhhHHHHHHHh-hcCCCCCEEecCCCCCChhhHH
Q 013056 328 SGPLFSLG-------------------AGKSLQSLRLLNLRGNNLCKADARDLGSAL-VHIPNLEILDISDNTIEDDGIR 387 (450)
Q Consensus 328 ~~l~~~l~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~ 387 (450)
+|..++ .|.+|+.|++|+++.|.|.- +|... .+++++..|||..|+++.
T Consensus 198 --lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDLRdNklke---- 266 (565)
T KOG0472|consen 198 --LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDLRDNKLKE---- 266 (565)
T ss_pred --CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeecccccccc----
Confidence 334444 22234444444444444442 33322 245555555555555544
Q ss_pred HHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056 388 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442 (450)
Q Consensus 388 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l 442 (450)
+| ..+..+++|++||+|+|.|+. ++-.+.++ +|+.|-+.||++
T Consensus 267 --~P---de~clLrsL~rLDlSNN~is~-----Lp~sLgnl--hL~~L~leGNPl 309 (565)
T KOG0472|consen 267 --VP---DEICLLRSLERLDLSNNDISS-----LPYSLGNL--HLKFLALEGNPL 309 (565)
T ss_pred --Cc---hHHHHhhhhhhhcccCCcccc-----CCcccccc--eeeehhhcCCch
Confidence 33 333333455555555555554 44444443 355555555544
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=1e-15 Score=142.73 Aligned_cols=239 Identities=17% Similarity=0.131 Sum_probs=160.5
Q ss_pred chhhcccccCcchhhhHhhh-cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC-CCCChhHHHHHHHHHhcc
Q 013056 163 YARCLRLQNALCVEETCQLL-RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~-~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~ 240 (450)
..-.++|..|.++.+|...+ .+++|+.||||+|.++.+ .+..|.+++.|.+|.+.+ |+|++.....+..
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g----- 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI----APDAFKGLASLLSLVLYGNNKITDLPKGAFGG----- 138 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhc----ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----
Confidence 44457899999999998877 789999999999995444 444477888888888777 7999776666655
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 320 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 320 (450)
+..++.|.+.-|++.- .....|..+++|..|.+.+|.+.. ++++.+..+..++++.+..|.+..
T Consensus 139 ---L~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 139 ---LSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred ---HHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccc
Confidence 5678888888888877 677888889999999999987644 444445556788888887776221
Q ss_pred -----cccc--------cC------------------------c--ccHHHh------------hhCCCCCCceeEEEcc
Q 013056 321 -----WLSK--------YD------------------------R--SGPLFS------------LGAGKSLQSLRLLNLR 349 (450)
Q Consensus 321 -----~~~~--------~~------------------------~--~~l~~~------------l~~~~~l~~L~~L~L~ 349 (450)
|..+ .+ + +.++.. -..++.+++|++|+|+
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 0000 00 0 011100 0112355677777777
Q ss_pred CCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCC
Q 013056 350 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLR 429 (450)
Q Consensus 350 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~ 429 (450)
+|+|+. .-..+|.....+++|.|..|+|.. +.. ..|..+..|+.|+|.+|+||.. -+.++..+
T Consensus 283 nN~i~~----i~~~aFe~~a~l~eL~L~~N~l~~------v~~--~~f~~ls~L~tL~L~~N~it~~----~~~aF~~~- 345 (498)
T KOG4237|consen 283 NNKITR----IEDGAFEGAAELQELYLTRNKLEF------VSS--GMFQGLSGLKTLSLYDNQITTV----APGAFQTL- 345 (498)
T ss_pred CCccch----hhhhhhcchhhhhhhhcCcchHHH------HHH--HhhhccccceeeeecCCeeEEE----eccccccc-
Confidence 777775 223456667777777777777654 222 4466667777777777777774 34445553
Q ss_pred CCCcEEECcCCCCC
Q 013056 430 RPPTSLSIADNNLG 443 (450)
Q Consensus 430 ~~L~~L~L~~N~l~ 443 (450)
.+|.+|+|-.|++-
T Consensus 346 ~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFN 359 (498)
T ss_pred ceeeeeehccCccc
Confidence 33777777777663
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.2e-14 Score=131.02 Aligned_cols=200 Identities=24% Similarity=0.232 Sum_probs=142.1
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCC-CCCCCCch
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS 263 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~i~~~~~~ 263 (450)
+.|+.||||...++.. ....+..+|..|+.|.|.+++++|..+..+++ +.+|+.|+++.+ .+++.
T Consensus 185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--------N~~L~~lnlsm~sG~t~n--- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK--------NSNLVRLNLSMCSGFTEN--- 250 (419)
T ss_pred hhhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcHHHHHHhc--------cccceeeccccccccchh---
Confidence 5689999988775433 23344778889999999999999998888887 689999999876 45552
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC--CCCcccccCcccHHHhhhCCCCCC
Q 013056 264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS--IGGWLSKYDRSGPLFSLGAGKSLQ 341 (450)
Q Consensus 264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~l~~~~~l~ 341 (450)
++.-.+.+|+.|..|+|++|.+..+.+..++..+ ..+|..|+|+++. +.. +++.... ..|+
T Consensus 251 ----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrnl~~-------sh~~tL~---~rcp 313 (419)
T KOG2120|consen 251 ----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRNLQK-------SHLSTLV---RRCP 313 (419)
T ss_pred ----HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhhhhh-------hHHHHHH---HhCC
Confidence 4556677899999999999988777776665543 4678899999985 222 1122222 3679
Q ss_pred ceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056 342 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 420 (450)
Q Consensus 342 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 420 (450)
+|..|||+.| .+++ .....+.+.+.|++|.++.|-.-+ |.-.-.+...+.|.+|++-+|- ++...+.
T Consensus 314 ~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~-------p~~~~~l~s~psl~yLdv~g~v-sdt~mel 381 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDII-------PETLLELNSKPSLVYLDVFGCV-SDTTMEL 381 (419)
T ss_pred ceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCC-------hHHeeeeccCcceEEEEecccc-CchHHHH
Confidence 9999999998 5666 355567888999999999885432 2111346777999999998884 3333333
Q ss_pred HHHHHhc
Q 013056 421 LLDTLST 427 (450)
Q Consensus 421 l~~~l~~ 427 (450)
+.+.+.+
T Consensus 382 ~~e~~~~ 388 (419)
T KOG2120|consen 382 LKEMLSH 388 (419)
T ss_pred HHHhCcc
Confidence 4444443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.2e-14 Score=152.15 Aligned_cols=210 Identities=20% Similarity=0.147 Sum_probs=123.8
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.|++++|.+..++.. .++|+.|++++|.+... +. ...+|+.|++++|+|+.... .
T Consensus 243 ~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L-p~-------lp~~L~~L~Ls~N~Lt~LP~---------~-- 300 (788)
T PRK15387 243 ELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL-PA-------LPSGLCKLWIFGNQLTSLPV---------L-- 300 (788)
T ss_pred CCcEEEecCCccCcccCc---ccccceeeccCCchhhh-hh-------chhhcCEEECcCCccccccc---------c--
Confidence 567777888877766532 36778888888874432 11 11457777777777763210 0
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHH------h---hcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEe
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVS------F---LSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD 312 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~------~---l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~ 312 (450)
.++|+.|++++|.++..... +..+.. . +..+ .+|++|+|++|+++. .|. + ..+|+.|+
T Consensus 301 -p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~-l-------p~~L~~L~ 368 (788)
T PRK15387 301 -PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPT-L-------PSELYKLW 368 (788)
T ss_pred -ccccceeECCCCccccCCCC--cccccccccccCccccccccccccceEecCCCccCC-CCC-C-------Ccccceeh
Confidence 35677777777777652210 000000 0 0000 234444444444443 111 0 13344444
Q ss_pred ccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHH
Q 013056 313 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 392 (450)
Q Consensus 313 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~ 392 (450)
+++|.+.. +|. ...+|+.|++++|.|+. +|.. .++|+.|++++|+|+. +|.
T Consensus 369 Ls~N~L~~---------LP~------l~~~L~~LdLs~N~Lt~-----LP~l---~s~L~~LdLS~N~Lss------IP~ 419 (788)
T PRK15387 369 AYNNRLTS---------LPA------LPSGLKELIVSGNRLTS-----LPVL---PSELKELMVSGNRLTS------LPM 419 (788)
T ss_pred hhcccccc---------Ccc------cccccceEEecCCcccC-----CCCc---ccCCCEEEccCCcCCC------CCc
Confidence 44444442 111 12468888888888874 4432 3578889999998876 542
Q ss_pred HHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 393 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 393 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
. ..+|+.|++++|+|+. ++..+..+. +|+.|+|++|+|++..+
T Consensus 420 ---l---~~~L~~L~Ls~NqLt~-----LP~sl~~L~-~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 420 ---L---PSGLLSLSVYRNQLTR-----LPESLIHLS-SETTVNLEGNPLSERTL 462 (788)
T ss_pred ---c---hhhhhhhhhccCcccc-----cChHHhhcc-CCCeEECCCCCCCchHH
Confidence 1 2468889999999986 788888754 49999999999987754
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.49 E-value=1.9e-15 Score=154.44 Aligned_cols=236 Identities=20% Similarity=0.188 Sum_probs=139.3
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHH-------
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR------- 235 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~------- 235 (450)
.++.+..+.|.+. .....+.-.+|+.+++++|.+.... .+...+.+|+.++..+|.+.. .+..+..
T Consensus 220 ~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-----~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 220 SLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP-----EWIGACANLEALNANHNRLVA-LPLRISRITSLVSL 292 (1081)
T ss_pred chheeeeccCcce-eeccccccccceeeecchhhhhcch-----HHHHhcccceEecccchhHHh-hHHHHhhhhhHHHH
Confidence 3444555555554 1111223367888888888754433 336677888888888887743 2222211
Q ss_pred --------HHhccccCCCCeeEEEcCCCCCCCCCchhhHH--HHHHhh---------------cCCCCCCEEecCCCCCC
Q 013056 236 --------SLCSKRKRIHKIENLSIDISSFIENCPSSVVV--ELVSFL---------------SSGRSLCSLKLRHCHLD 290 (450)
Q Consensus 236 --------~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~--~l~~~l---------------~~~~~L~~L~Ls~n~l~ 290 (450)
.+.....+...|++|+|..|.+.......+.. .....+ ..++.|+.|.+.+|.++
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 11111223456777777777765533321110 000000 01234556666667776
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
+.....+ ....+|+.|+|++|++...-. ..+ .+++.|++|+|++|+++. ||..+..++.
T Consensus 373 d~c~p~l-----~~~~hLKVLhLsyNrL~~fpa--------s~~---~kle~LeeL~LSGNkL~~-----Lp~tva~~~~ 431 (1081)
T KOG0618|consen 373 DSCFPVL-----VNFKHLKVLHLSYNRLNSFPA--------SKL---RKLEELEELNLSGNKLTT-----LPDTVANLGR 431 (1081)
T ss_pred ccchhhh-----ccccceeeeeecccccccCCH--------HHH---hchHHhHHHhcccchhhh-----hhHHHHhhhh
Confidence 6655544 335677777777777664221 222 355677777777777774 7777777777
Q ss_pred CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 441 (450)
Q Consensus 371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~ 441 (450)
|++|..-+|+|.. .| .+..++.|+.+|++.|+|+... ++..... ++|++||++||.
T Consensus 432 L~tL~ahsN~l~~------fP----e~~~l~qL~~lDlS~N~L~~~~---l~~~~p~--p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLS------FP----ELAQLPQLKVLDLSCNNLSEVT---LPEALPS--PNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCCceee------ch----hhhhcCcceEEecccchhhhhh---hhhhCCC--cccceeeccCCc
Confidence 7777777777765 44 3566799999999999998853 3333332 559999999996
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=4.3e-15 Score=151.85 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=158.6
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHH------------------HHhcCCCccEEEccCCC
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKL------------------LIQNSETLASLEFLHCK 224 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~------------------l~~~~~~L~~L~Ls~n~ 224 (450)
++.+++++.+....+|..+..+.+|+.+...+|.+......+... ...+.+.|++|+|..|+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 557788899999999988889999999999999864443332111 01246789999999998
Q ss_pred CChhHHHHHHHH---Hhcc--------------ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC
Q 013056 225 LSPSFVEGICRS---LCSK--------------RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 287 (450)
Q Consensus 225 l~~~~~~~l~~~---L~~~--------------~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 287 (450)
|.......+... +... ....+.|+.|.+.+|.+++ .....+.+.+.|+.|+|++|
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd--------~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD--------SCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc--------cchhhhccccceeeeeeccc
Confidence 875443222111 1100 0112357888899999999 77788889999999999999
Q ss_pred CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhc
Q 013056 288 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVH 367 (450)
Q Consensus 288 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~ 367 (450)
.++. .|..- +.++..|++|+||+|.++. +|..+. .+..|++|...+|+|.. +| .+..
T Consensus 394 rL~~-fpas~----~~kle~LeeL~LSGNkL~~---------Lp~tva---~~~~L~tL~ahsN~l~~-----fP-e~~~ 450 (1081)
T KOG0618|consen 394 RLNS-FPASK----LRKLEELEELNLSGNKLTT---------LPDTVA---NLGRLHTLRAHSNQLLS-----FP-ELAQ 450 (1081)
T ss_pred cccc-CCHHH----HhchHHhHHHhcccchhhh---------hhHHHH---hhhhhHHHhhcCCceee-----ch-hhhh
Confidence 9987 34332 2346899999999999997 777777 56899999999999985 78 6889
Q ss_pred CCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056 368 IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 412 (450)
Q Consensus 368 ~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 412 (450)
++.|+.+|+|.|.++...+....| . ++|++|||++|.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p-------~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALP-------S-PNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCC-------C-cccceeeccCCc
Confidence 999999999999998753333322 2 899999999997
No 22
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.48 E-value=5.7e-15 Score=147.67 Aligned_cols=241 Identities=25% Similarity=0.267 Sum_probs=199.9
Q ss_pred ccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhH
Q 013056 187 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 266 (450)
Q Consensus 187 L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 266 (450)
+..|.|.+|.+...............++|+.|++++|.+++.+...++..+... -+.+++|.+..|.++..+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~---~~~l~~L~l~~c~l~~~g~~--- 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP---QCLLQTLELVSCSLTSEGAA--- 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc---hHHHHHHHhhcccccccchH---
Confidence 677788888765555555555566778999999999999999999999988875 47788999999999997776
Q ss_pred HHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhh---CCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc-
Q 013056 267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS- 342 (450)
Q Consensus 267 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~- 342 (450)
.+...+..+..++.++++.|.+...+...++.++.. ..+++++|.+++|.++ ...|..+...+... +.
T Consensus 163 -~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t----~~~c~~l~~~l~~~---~~~ 234 (478)
T KOG4308|consen 163 -PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT----SSSCALLDEVLASG---ESL 234 (478)
T ss_pred -HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC----hHHHHHHHHHHhcc---chh
Confidence 677777778999999999999888888888888876 6788999999999988 46666777777754 44
Q ss_pred eeEEEccCCCCChhhHHHHHHHhhcC-CCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHH
Q 013056 343 LRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQL 421 (450)
Q Consensus 343 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l 421 (450)
+..|++..|.+.+.|++.+.+.+..+ +.+++++++.|.|++.|...+. +.+..++.++.|.++.|.+++.++..+
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCccccHHHHHH
Confidence 67799999999999999999999988 7899999999999999999887 556777899999999999999999999
Q ss_pred HHHHhcCCCCCcEEECcCCCCCccc
Q 013056 422 LDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 422 ~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
.+.+.. ...+..+-+.++......
T Consensus 311 ~~~l~~-~~~~~~~~l~~~~~~~~~ 334 (478)
T KOG4308|consen 311 LEALER-KTPLLHLVLGGTGKGTRG 334 (478)
T ss_pred HHHhhh-cccchhhhccccCccchh
Confidence 988888 455777777766554443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=4.1e-14 Score=148.85 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=140.0
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.+..+++++|.+..++..+. .+|+.|++++|.+......+ .++|+.|+|++|.+... +..+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~~L-P~~l--------- 260 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRITEL-PERL--------- 260 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-------hccccEEECcCCccCcC-ChhH---------
Confidence 55667777777777766554 47888888888765432211 13688888888877732 2222
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
..+|+.|++++|+++. ++..+ .++|+.|++++|+++. .+..+ ..+|+.|++++|.++.
T Consensus 261 -~s~L~~L~Ls~N~L~~---------LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------p~sL~~L~Ls~N~Lt~-- 318 (754)
T PRK15370 261 -PSALQSLDLFHNKISC---------LPENL--PEELRYLSVYDNSIRT-LPAHL-------PSGITHLNVQSNSLTA-- 318 (754)
T ss_pred -hCCCCEEECcCCccCc---------ccccc--CCCCcEEECCCCcccc-Ccccc-------hhhHHHHHhcCCcccc--
Confidence 2468888888888765 22222 1478888888888775 33322 2467888888888774
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|+|+. +| ..+. ++
T Consensus 319 -------LP~~l~-----~sL~~L~Ls~N~Lt~-----LP~~l~--~sL~~L~Ls~N~L~~------LP---~~lp--~~ 368 (754)
T PRK15370 319 -------LPETLP-----PGLKTLEAGENALTS-----LPASLP--PELQVLDVSKNQITV------LP---ETLP--PT 368 (754)
T ss_pred -------CCcccc-----ccceeccccCCcccc-----CChhhc--CcccEEECCCCCCCc------CC---hhhc--CC
Confidence 223332 679999999999885 666553 689999999999985 44 2232 68
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
|++|+|++|.|+. ++..+.. .|+.|++++|+|+.
T Consensus 369 L~~LdLs~N~Lt~-----LP~~l~~---sL~~LdLs~N~L~~ 402 (754)
T PRK15370 369 ITTLDVSRNALTN-----LPENLPA---ALQIMQASRNNLVR 402 (754)
T ss_pred cCEEECCCCcCCC-----CCHhHHH---HHHHHhhccCCccc
Confidence 9999999999986 5555543 38999999999974
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.8e-13 Score=143.36 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=57.6
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.+..+.+.+|.+..++. ..++|++|++++|.+..... ..++|+.|++++|.|+... . +
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~--------lp~sL~~L~Ls~N~L~~Lp-~-l--------- 280 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFSNPLTHLP-A-L--------- 280 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC--------cccccceeeccCCchhhhh-h-c---------
Confidence 44556666666665543 23677777777777554321 1246777777777766311 1 1
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 291 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 291 (450)
..+|+.|++++|+++.. +. ..++|++|+|++|+++.
T Consensus 281 -p~~L~~L~Ls~N~Lt~L---------P~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 281 -PSGLCKLWIFGNQLTSL---------PV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred -hhhcCEEECcCCccccc---------cc---cccccceeECCCCcccc
Confidence 24577788888877652 21 13678888888887765
No 25
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.38 E-value=5.3e-14 Score=140.75 Aligned_cols=215 Identities=22% Similarity=0.259 Sum_probs=187.4
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhH
Q 013056 215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDF 293 (450)
Q Consensus 215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~ 293 (450)
+..|.|.+|.+.+.+...++.++.. +..|+.|+++.|.+.+.+.. .+...+... +.|++|++..|.++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t----~~~L~~L~l~~n~l~~~g~~----~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKT----LPTLGQLDLSGNNLGDEGAR----LLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcc----cccHhHhhcccCCCccHhHH----HHHhhcccchHHHHHHHhhcccccccc
Confidence 7889999999999999999999888 48999999999999975554 667777776 78999999999999999
Q ss_pred HHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC-CCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC-C
Q 013056 294 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-L 371 (450)
Q Consensus 294 ~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L 371 (450)
...+.+.+.. ...++.++++.|.+. ..+...++..+.. +....++++|++.+|.++..++..+...+...++ +
T Consensus 161 ~~~l~~~L~~-~~~l~~l~l~~n~l~----~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~ 235 (478)
T KOG4308|consen 161 AAPLAAVLEK-NEHLTELDLSLNGLI----ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLL 235 (478)
T ss_pred hHHHHHHHhc-ccchhHHHHHhcccc----hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhh
Confidence 9999999888 699999999999987 3444556666664 3346889999999999999999999999998888 8
Q ss_pred CEEecCCCCCChhhHHHHHHHHHhhcCCC-CCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 372 EILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+.|+++.|.+.|.|+..+.|. +... +.+++++++.|.|++.|+..+++.+.... .++++.++.|++++.+.
T Consensus 236 ~el~l~~n~l~d~g~~~L~~~----l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 236 RELDLASNKLGDVGVEKLLPC----LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHhcCcchHHHHHHHHH----hcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHH
Confidence 889999999999999999875 3444 78999999999999999999999999955 69999999999988653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.6e-13 Score=129.90 Aligned_cols=191 Identities=19% Similarity=0.141 Sum_probs=94.3
Q ss_pred hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCC
Q 013056 182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 261 (450)
Q Consensus 182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~ 261 (450)
..++++++||||+|-+... . ....++..+|+|+.|+|+.|++....-...... ..+|+.|.++.|.++.
T Consensus 143 k~~~~v~~LdLS~NL~~nw-~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-------l~~lK~L~l~~CGls~-- 211 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNW-F-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-------LSHLKQLVLNSCGLSW-- 211 (505)
T ss_pred hhCCcceeecchhhhHHhH-H-HHHHHHHhcccchhcccccccccCCccccchhh-------hhhhheEEeccCCCCH--
Confidence 3566777777777653332 1 123345566777777777775542211111111 3556666666666654
Q ss_pred chhhHHHHHHhhcCCCCCCEEecCCCC-CCh-hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCC
Q 013056 262 PSSVVVELVSFLSSGRSLCSLKLRHCH-LDR-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 339 (450)
Q Consensus 262 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~ 339 (450)
..+...+..+|+|+.|+|.+|. +.. .....+ ++.|++|||++|++.+.- .+.....
T Consensus 212 -----k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i-------~~~L~~LdLs~N~li~~~----------~~~~~~~ 269 (505)
T KOG3207|consen 212 -----KDVQWILLTFPSLEVLYLEANEIILIKATSTKI-------LQTLQELDLSNNNLIDFD----------QGYKVGT 269 (505)
T ss_pred -----HHHHHHHHhCCcHHHhhhhcccccceecchhhh-------hhHHhhccccCCcccccc----------ccccccc
Confidence 1344444556666666666663 111 111111 355666666666654311 0111124
Q ss_pred CCceeEEEccCCCCChhhHHHHHHH-----hhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056 340 LQSLRLLNLRGNNLCKADARDLGSA-----LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 414 (450)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~l~~~-----l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 414 (450)
++.|+.|+++.|.|.+-. +|.+ ....++|+.|+++.|+|.+ .+++ ..+..+++|+.|....|.++
T Consensus 270 l~~L~~Lnls~tgi~si~---~~d~~s~~kt~~f~kL~~L~i~~N~I~~------w~sl-~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIA---EPDVESLDKTHTFPKLEYLNISENNIRD------WRSL-NHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhc---CCCccchhhhcccccceeeecccCcccc------cccc-chhhccchhhhhhccccccc
Confidence 456666666666655421 1211 2344566666666666655 3332 33444455555555555544
Q ss_pred h
Q 013056 415 G 415 (450)
Q Consensus 415 ~ 415 (450)
.
T Consensus 340 ~ 340 (505)
T KOG3207|consen 340 K 340 (505)
T ss_pred c
Confidence 3
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=2.6e-15 Score=124.94 Aligned_cols=157 Identities=24% Similarity=0.284 Sum_probs=103.3
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056 211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 290 (450)
Q Consensus 211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 290 (450)
++.+++.|.||+|+++ ..+..+++ +.+|+.|++.+|++.+ ++..++++++|+.|+++-|++.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~--------l~nlevln~~nnqie~---------lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE--------LKNLEVLNLSNNQIEE---------LPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH--------hhhhhhhhcccchhhh---------cChhhhhchhhhheecchhhhh
Confidence 4567777888888877 45555555 5677777777777765 6666677777777777777654
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
. .|..+ +.++.|+.|||+.|++... .+|..+. .+..|+.|.|+.|.+. .+|..++++++
T Consensus 93 ~-lprgf-----gs~p~levldltynnl~e~-------~lpgnff---~m~tlralyl~dndfe-----~lp~dvg~lt~ 151 (264)
T KOG0617|consen 93 I-LPRGF-----GSFPALEVLDLTYNNLNEN-------SLPGNFF---YMTTLRALYLGDNDFE-----ILPPDVGKLTN 151 (264)
T ss_pred c-Ccccc-----CCCchhhhhhccccccccc-------cCCcchh---HHHHHHHHHhcCCCcc-----cCChhhhhhcc
Confidence 3 33333 3357777777777776631 1223322 4566777777777665 37777777777
Q ss_pred CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
|+.|.+..|.+-. +| ..++.+..|++|++.+|.++.
T Consensus 152 lqil~lrdndll~------lp---keig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 152 LQILSLRDNDLLS------LP---KEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eeEEeeccCchhh------Cc---HHHHHHHHHHHHhcccceeee
Confidence 7777777776654 44 556666777777777777665
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=2.6e-13 Score=126.83 Aligned_cols=214 Identities=21% Similarity=0.192 Sum_probs=155.4
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcC-CCCCCCCCch
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID-ISSFIENCPS 263 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~-~n~i~~~~~~ 263 (450)
+.-.+++|..|.+....+.. |+.+++|++|||++|.|+...+.++.. +.++.+|-+- +|+|++
T Consensus 67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~G--------L~~l~~Lvlyg~NkI~~---- 130 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKG--------LASLLSLVLYGNNKITD---- 130 (498)
T ss_pred CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhh--------hHhhhHHHhhcCCchhh----
Confidence 45678899999966655544 789999999999999999888888866 4556666554 589988
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056 264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 343 (450)
Q Consensus 264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 343 (450)
.-...|+++.+|+.|.+.-|++.-.....+ ..++++..|.+-.|.+...- . +.+..+..+
T Consensus 131 ----l~k~~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~i~---------~--~tf~~l~~i 190 (498)
T KOG4237|consen 131 ----LPKGAFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQSIC---------K--GTFQGLAAI 190 (498)
T ss_pred ----hhhhHhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhhhc---------c--ccccchhcc
Confidence 566778889999999999999877444444 33689999999999876421 1 233355666
Q ss_pred eEEEccCCCC------------------ChhhH-------------------------HHHH---------------HHh
Q 013056 344 RLLNLRGNNL------------------CKADA-------------------------RDLG---------------SAL 365 (450)
Q Consensus 344 ~~L~L~~n~l------------------~~~~~-------------------------~~l~---------------~~l 365 (450)
+++.+..|.+ ...|+ +.++ ..+
T Consensus 191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF 270 (498)
T ss_pred chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH
Confidence 6666666541 11111 0111 257
Q ss_pred hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 366 ~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
..+++|+.|+|++|+|+.. .+ .+|.....+++|.|..|+|... -...+..+.. |+.|+|.+|+|+--
T Consensus 271 ~~L~~L~~lnlsnN~i~~i-----~~---~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~ls~-L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRI-----ED---GAFEGAAELQELYLTRNKLEFV----SSGMFQGLSG-LKTLSLYDNQITTV 337 (498)
T ss_pred hhcccceEeccCCCccchh-----hh---hhhcchhhhhhhhcCcchHHHH----HHHhhhcccc-ceeeeecCCeeEEE
Confidence 7889999999999999882 33 6788889999999999998774 2344555433 99999999999864
Q ss_pred cc
Q 013056 446 CA 447 (450)
Q Consensus 446 ~~ 447 (450)
.|
T Consensus 338 ~~ 339 (498)
T KOG4237|consen 338 AP 339 (498)
T ss_pred ec
Confidence 43
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.32 E-value=2.6e-12 Score=143.71 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.+++.++....+|..+ ...+|++|+++++.+...+.. ...+++|+.|+|++|......+ .+..
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip-~ls~------- 655 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIP-DLSM------- 655 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCC-cccc-------
Confidence 4566777777666666544 456777777777764433222 2456677777777653211111 1111
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 287 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 287 (450)
+++|+.|++++|.... .++..+..+++|+.|++++|
T Consensus 656 -l~~Le~L~L~~c~~L~--------~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 656 -ATNLETLKLSDCSSLV--------ELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred -CCcccEEEecCCCCcc--------ccchhhhccCCCCEEeCCCC
Confidence 4666777776665433 34555556666666666665
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-12 Score=123.80 Aligned_cols=232 Identities=21% Similarity=0.170 Sum_probs=158.4
Q ss_pred cchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhccccCCCCeeEEE
Q 013056 173 LCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLS 251 (450)
Q Consensus 173 ~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~ 251 (450)
.+..+...=.+..+|++..|.+......... .....+++++.|||++|-+.. ..+..+++. +++|+.|+
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq-------Lp~Le~LN 178 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ-------LPSLENLN 178 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHh-------cccchhcc
Confidence 3334444445668889999988774333221 346789999999999997764 333445554 68999999
Q ss_pred cCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHH
Q 013056 252 IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL 331 (450)
Q Consensus 252 L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 331 (450)
++.|++..-...... ..++.|+.|.|+.|.++...+..+... +++|+.|+|..|.....-. .+
T Consensus 179 ls~Nrl~~~~~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~----fPsl~~L~L~~N~~~~~~~------~~ 241 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLT----FPSLEVLYLEANEIILIKA------TS 241 (505)
T ss_pred cccccccCCccccch-------hhhhhhheEEeccCCCCHHHHHHHHHh----CCcHHHhhhhcccccceec------ch
Confidence 999988653322111 146889999999999998888777554 7999999999995221111 11
Q ss_pred HhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056 332 FSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411 (450)
Q Consensus 332 ~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 411 (450)
.. -++.|+.|||++|++-+.. .....+.++.|+.|+++.+.|++-..... .++ ......++|++|+++.|
T Consensus 242 ~~-----i~~~L~~LdLs~N~li~~~---~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s~-~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 242 TK-----ILQTLQELDLSNNNLIDFD---QGYKVGTLPGLNQLNLSSTGIASIAEPDV-ESL-DKTHTFPKLEYLNISEN 311 (505)
T ss_pred hh-----hhhHHhhccccCCcccccc---cccccccccchhhhhccccCcchhcCCCc-cch-hhhcccccceeeecccC
Confidence 22 3478999999999887632 23557889999999999999876211000 000 11355689999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 412 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 412 ~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+|.+.- -...+..+ .+|+.|.+.+|.|+.+
T Consensus 312 ~I~~w~---sl~~l~~l-~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 312 NIRDWR---SLNHLRTL-ENLKHLRITLNYLNKE 341 (505)
T ss_pred cccccc---ccchhhcc-chhhhhhccccccccc
Confidence 996631 23344442 3488888888888654
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=7.2e-15 Score=122.33 Aligned_cols=184 Identities=19% Similarity=0.201 Sum_probs=135.8
Q ss_pred HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCC
Q 013056 179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 258 (450)
Q Consensus 179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~ 258 (450)
..+++..+++.|.||+|++....+.+ ..+.+|+.|++.+|+|++. +..+.. +++|+.|+++-|++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppni-----a~l~nlevln~~nnqie~l-p~~iss--------l~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNI-----AELKNLEVLNLSNNQIEEL-PTSISS--------LPKLRILNVGMNRLN 92 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcH-----HHhhhhhhhhcccchhhhc-Chhhhh--------chhhhheecchhhhh
Confidence 45566788888999999976655543 4667899999999988843 333333 688999999988875
Q ss_pred CCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHH-HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCC
Q 013056 259 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR-MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 337 (450)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~ 337 (450)
. ++..|+.+|.|+.|||++|++...... .++- +..|+.|+|+.|.+.- +|..++
T Consensus 93 ~---------lprgfgs~p~levldltynnl~e~~lpgnff~-----m~tlralyl~dndfe~---------lp~dvg-- 147 (264)
T KOG0617|consen 93 I---------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-----MTTLRALYLGDNDFEI---------LPPDVG-- 147 (264)
T ss_pred c---------CccccCCCchhhhhhccccccccccCCcchhH-----HHHHHHHHhcCCCccc---------CChhhh--
Confidence 5 778889999999999999988764322 2211 4678889999998764 667778
Q ss_pred CCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCC
Q 013056 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 413 (450)
Q Consensus 338 ~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l 413 (450)
.+++|+.|.++.|.+-. +|..++.+.+|++|.+.+|+++- +|.-...+....+=+...+.+|..
T Consensus 148 -~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqgnrl~v------lppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 148 -KLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQGNRLTV------LPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred -hhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhcccceeee------cChhhhhhhhhhhHHHHhhhhCCC
Confidence 56899999999998875 99999999999999999999976 442112222223344556667763
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.23 E-value=2.7e-11 Score=135.67 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=45.0
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.+..+++.++.+..++..+..+++|+.|+|+++.....++. +..+++|+.|+|++|......+..+..
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~------- 679 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQY------- 679 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhc-------
Confidence 45566677766666655556667777777776542222222 234566777777766433333333322
Q ss_pred CCCCeeEEEcCCCC
Q 013056 243 RIHKIENLSIDISS 256 (450)
Q Consensus 243 ~~~~L~~L~L~~n~ 256 (450)
+.+|+.|++++|.
T Consensus 680 -L~~L~~L~L~~c~ 692 (1153)
T PLN03210 680 -LNKLEDLDMSRCE 692 (1153)
T ss_pred -cCCCCEEeCCCCC
Confidence 4556666666553
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-11 Score=111.41 Aligned_cols=160 Identities=27% Similarity=0.362 Sum_probs=81.8
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChh
Q 013056 214 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRD 292 (450)
Q Consensus 214 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 292 (450)
.|+.|||+...|+...+..+.+. |.+|+.|++.++++.+ .+...++.+.+|..|+|+.+ .++..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~LdD--------~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLDD--------PIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccCc--------HHHHHHhccccceeeccccccccchh
Confidence 45666666666665544444332 5566666666666655 55555556666666666654 45554
Q ss_pred HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC--CCChhhHHHHHHHhhcCCC
Q 013056 293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN--NLCKADARDLGSALVHIPN 370 (450)
Q Consensus 293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~ 370 (450)
+...+ +.+|+.|+.|+|++|.+.. .....+...++ ++|+.|+|+++ ++.+. ++..-..++++
T Consensus 251 ~~~ll----~~scs~L~~LNlsWc~l~~----~~Vtv~V~his-----e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~ 314 (419)
T KOG2120|consen 251 ALQLL----LSSCSRLDELNLSWCFLFT----EKVTVAVAHIS-----ETLTQLNLSGYRRNLQKS---HLSTLVRRCPN 314 (419)
T ss_pred HHHHH----HHhhhhHhhcCchHhhccc----hhhhHHHhhhc-----hhhhhhhhhhhHhhhhhh---HHHHHHHhCCc
Confidence 44433 2335666666666665542 11122222222 55666666665 23332 23333445666
Q ss_pred CCEEecCCC-CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056 371 LEILDISDN-TIEDDGIRSLIPYFVQASERCNPLVELYLENCE 412 (450)
Q Consensus 371 L~~L~Ls~N-~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 412 (450)
|.+||||.| .+++.-+ ..+.+++.|++|.++.|.
T Consensus 315 l~~LDLSD~v~l~~~~~--------~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCF--------QEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred eeeeccccccccCchHH--------HHHHhcchheeeehhhhc
Confidence 666666653 3444211 223344566666666664
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=1.8e-11 Score=105.95 Aligned_cols=129 Identities=26% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056 276 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355 (450)
Q Consensus 276 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 355 (450)
...+++|+|.+|.|+.. +.+ -..+.+|+.|+|++|.|+. +..+..++.|++|++++|.|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L----~~~l~~L~~L~Ls~N~I~~-------------l~~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENL----GATLDKLEVLDLSNNQITK-------------LEGLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS---S
T ss_pred ccccccccccccccccc--cch----hhhhcCCCEEECCCCCCcc-------------ccCccChhhhhhcccCCCCCCc
Confidence 34677788888777641 122 1235678888888888774 1223356778888888888876
Q ss_pred hhHHHHHHHh-hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcE
Q 013056 356 ADARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTS 434 (450)
Q Consensus 356 ~~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~ 434 (450)
+.+.+ ..+++|++|+|++|+|.+-+ .+ ..+..+++|+.|+|.+|+++...-. =.-.+..+++ |+.
T Consensus 79 -----i~~~l~~~lp~L~~L~L~~N~I~~l~--~l-----~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~-Lk~ 144 (175)
T PF14580_consen 79 -----ISEGLDKNLPNLQELYLSNNKISDLN--EL-----EPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPS-LKV 144 (175)
T ss_dssp ------CHHHHHH-TT--EEE-TTS---SCC--CC-----GGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT--SE
T ss_pred -----cccchHHhCCcCCEEECcCCcCCChH--Hh-----HHHHcCCCcceeeccCCcccchhhH-HHHHHHHcCh-hhe
Confidence 43333 35778888888888876521 11 3355668888888888887653211 1122333333 777
Q ss_pred EEC
Q 013056 435 LSI 437 (450)
Q Consensus 435 L~L 437 (450)
||-
T Consensus 145 LD~ 147 (175)
T PF14580_consen 145 LDG 147 (175)
T ss_dssp ETT
T ss_pred eCC
Confidence 764
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=8e-11 Score=101.92 Aligned_cols=131 Identities=24% Similarity=0.267 Sum_probs=41.7
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056 211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 290 (450)
Q Consensus 211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 290 (450)
+...+++|+|++|.|+.. +.+.. .+.+|+.|++++|.|+.. +.+..++.|++|++++|.|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~-------~l~~L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGA-------TLDKLEVLDLSNNQITKL----------EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ---------------------S--T-------T-TT--EEE-TTS--S------------TT----TT--EEE--SS---
T ss_pred cccccccccccccccccc--cchhh-------hhcCCCEEECCCCCCccc----------cCccChhhhhhcccCCCCCC
Confidence 344567777777766631 11111 035677777777776652 23445677888888888777
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
.... .+. ..+++|++|++++|+|.+... +..+..+++|+.|+|.+|.+++.. .+=...+..+|+
T Consensus 78 ~i~~-~l~----~~lp~L~~L~L~~N~I~~l~~----------l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~ 141 (175)
T PF14580_consen 78 SISE-GLD----KNLPNLQELYLSNNKISDLNE----------LEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPS 141 (175)
T ss_dssp S-CH-HHH----HH-TT--EEE-TTS---SCCC----------CGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-TT
T ss_pred cccc-chH----HhCCcCCEEECcCCcCCChHH----------hHHHHcCCCcceeeccCCcccchh-hHHHHHHHHcCh
Confidence 6322 121 125778888888887765321 233335577777777777766432 122334566777
Q ss_pred CCEEec
Q 013056 371 LEILDI 376 (450)
Q Consensus 371 L~~L~L 376 (450)
|+.||-
T Consensus 142 Lk~LD~ 147 (175)
T PF14580_consen 142 LKVLDG 147 (175)
T ss_dssp -SEETT
T ss_pred hheeCC
Confidence 777764
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=2.9e-11 Score=109.56 Aligned_cols=131 Identities=24% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChh
Q 013056 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 356 (450)
Q Consensus 277 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~ 356 (450)
+.|+++|||+|.|+.. -+.+ .-.+.++.|++|+|.|... +.+.++++|+.|||++|.++.
T Consensus 284 q~LtelDLS~N~I~~i-DESv-----KL~Pkir~L~lS~N~i~~v-------------~nLa~L~~L~~LDLS~N~Ls~- 343 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESV-----KLAPKLRRLILSQNRIRTV-------------QNLAELPQLQLLDLSGNLLAE- 343 (490)
T ss_pred hhhhhccccccchhhh-hhhh-----hhccceeEEeccccceeee-------------hhhhhcccceEeecccchhHh-
Confidence 4566777777766541 1111 1146777777777776531 223355677777777777664
Q ss_pred hHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 013056 357 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 436 (450)
Q Consensus 357 ~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~ 436 (450)
+-.+=.++.+.++|.|+.|.|.+ + ..++++-+|..||+++|+|.... -..++.+++. |+++.
T Consensus 344 ----~~Gwh~KLGNIKtL~La~N~iE~------L----SGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPC-LE~l~ 405 (490)
T KOG1259|consen 344 ----CVGWHLKLGNIKTLKLAQNKIET------L----SGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPC-LETLR 405 (490)
T ss_pred ----hhhhHhhhcCEeeeehhhhhHhh------h----hhhHhhhhheeccccccchhhHH---HhcccccccH-HHHHh
Confidence 32222355667777777777655 2 23444456777777777765521 2344555444 77777
Q ss_pred CcCCCCCcc
Q 013056 437 IADNNLGRF 445 (450)
Q Consensus 437 L~~N~l~~~ 445 (450)
|.+|+|...
T Consensus 406 L~~NPl~~~ 414 (490)
T KOG1259|consen 406 LTGNPLAGS 414 (490)
T ss_pred hcCCCcccc
Confidence 777776553
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=1.7e-11 Score=119.72 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=75.4
Q ss_pred HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc
Q 013056 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 348 (450)
Q Consensus 269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L 348 (450)
++..++++..|++|||+.|+++. .|..+|. .-|+.|.+++|+++. +|..++ ....|..|+.
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~------lpLkvli~sNNkl~~---------lp~~ig---~~~tl~~ld~ 173 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSH-LPDGLCD------LPLKVLIVSNNKLTS---------LPEEIG---LLPTLAHLDV 173 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhc-CChhhhc------CcceeEEEecCcccc---------CCcccc---cchhHHHhhh
Confidence 34444455556666666665554 4444432 346666666666554 344444 2355666666
Q ss_pred cCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcC
Q 013056 349 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTL 428 (450)
Q Consensus 349 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l 428 (450)
+.|.|.. +|..++.+.+|+.|.+..|++.+ +| ..+. .-.|..||+++|+++. ++-.+.++
T Consensus 174 s~nei~s-----lpsql~~l~slr~l~vrRn~l~~------lp---~El~-~LpLi~lDfScNkis~-----iPv~fr~m 233 (722)
T KOG0532|consen 174 SKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED------LP---EELC-SLPLIRLDFSCNKISY-----LPVDFRKM 233 (722)
T ss_pred hhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh------CC---HHHh-CCceeeeecccCceee-----cchhhhhh
Confidence 6666553 56666666666666666666555 33 2333 2356666666666665 55555554
Q ss_pred CCCCcEEECcCCCCCcc
Q 013056 429 RRPPTSLSIADNNLGRF 445 (450)
Q Consensus 429 ~~~L~~L~L~~N~l~~~ 445 (450)
++|++|-|.+|++++.
T Consensus 234 -~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 234 -RHLQVLQLENNPLQSP 249 (722)
T ss_pred -hhheeeeeccCCCCCC
Confidence 2366666666666554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.6e-10 Score=103.48 Aligned_cols=191 Identities=20% Similarity=0.200 Sum_probs=126.0
Q ss_pred HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHH---HH-HHHHHhcc-----------ccC
Q 013056 179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV---EG-ICRSLCSK-----------RKR 243 (450)
Q Consensus 179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~---~~-l~~~L~~~-----------~~~ 243 (450)
..+.-..+|..+.+|++.-..... + ...-|.|+.+...+..+++... .. ++..+... ...
T Consensus 208 f~l~~f~~l~~~~~s~~~~~~i~~-~----~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTENIVD-I----ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cchHHhhhhheeeeeccchhheec-e----eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch
Confidence 344445777888888876332211 1 1223677777776665543211 11 11000000 000
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
-..|++++|++|.|+. +-+..+-.|.++.|++|+|.+...+- ++ .+++|+.||||+|.++..
T Consensus 283 Wq~LtelDLS~N~I~~---------iDESvKL~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls~~-- 344 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ---------IDESVKLAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLAEC-- 344 (490)
T ss_pred Hhhhhhccccccchhh---------hhhhhhhccceeEEeccccceeeehh--hh-----hcccceEeecccchhHhh--
Confidence 1348899999999877 34445556999999999999876333 32 269999999999987631
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
-+--..+-++++|+|++|.|.+ -..+.++-+|..||+++|+|.. +... ..+++++-|
T Consensus 345 ----------~Gwh~KLGNIKtL~La~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~------ldeV-~~IG~LPCL 401 (490)
T KOG1259|consen 345 ----------VGWHLKLGNIKTLKLAQNKIET------LSGLRKLYSLVNLDLSSNQIEE------LDEV-NHIGNLPCL 401 (490)
T ss_pred ----------hhhHhhhcCEeeeehhhhhHhh------hhhhHhhhhheeccccccchhh------HHHh-cccccccHH
Confidence 1111256789999999999875 3457888899999999999976 3322 567888999
Q ss_pred CEEEccCCCCCh
Q 013056 404 VELYLENCELSG 415 (450)
Q Consensus 404 ~~L~L~~n~l~~ 415 (450)
+.|.|.+|.+..
T Consensus 402 E~l~L~~NPl~~ 413 (490)
T KOG1259|consen 402 ETLRLTGNPLAG 413 (490)
T ss_pred HHHhhcCCCccc
Confidence 999999999765
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=2.1e-09 Score=101.84 Aligned_cols=229 Identities=21% Similarity=0.261 Sum_probs=124.7
Q ss_pred chhhcccccCcchh-h-hHhhh-cCCCccEEEeeccc-ChH-HHHHH----------------------HHHHHhcCCCc
Q 013056 163 YARCLRLQNALCVE-E-TCQLL-RESKLQSLVLRWIR-FEE-HVQAL----------------------CKLLIQNSETL 215 (450)
Q Consensus 163 ~l~~l~L~~~~~~~-~-~~~l~-~~~~L~~L~Ls~n~-~~~-~~~~l----------------------~~~l~~~~~~L 215 (450)
.++.+.+..|...+ . ...+. .+++|++|++|.+. +.+ .+..+ +......+.-+
T Consensus 191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 45566666644332 1 12233 67888888888876 221 11111 11111222334
Q ss_pred cEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCC-CCCCchhhHHHHHHhh-cCCCCCCEEecCCC-CCCh
Q 013056 216 ASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF-IENCPSSVVVELVSFL-SSGRSLCSLKLRHC-HLDR 291 (450)
Q Consensus 216 ~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~~l~~~l-~~~~~L~~L~Ls~n-~l~~ 291 (450)
..+++.+| .++|...-.++.. ++.||.|..+++.. ++ .....+ .++++|+.|-++.+ ++++
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~-------c~~lq~l~~s~~t~~~d--------~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACG-------CHALQVLCYSSCTDITD--------EVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred hccchhhhccccchHHHHHhhh-------hhHhhhhcccCCCCCch--------HHHHHHhcCCCceEEEeccccchhhh
Confidence 44444444 4555554444443 55566666655532 22 222233 34566777777666 3555
Q ss_pred hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCC-CCCCceeEEEccCC-CCChhhHHHHHHHhhcCC
Q 013056 292 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLRGN-NLCKADARDLGSALVHIP 369 (450)
Q Consensus 292 ~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~-~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~ 369 (450)
.+...+. .+++.|+.+++..+..... ..+..+ .+|+.|++|.|+.| .|+++|+.++...-..+.
T Consensus 336 ~~ft~l~----rn~~~Le~l~~e~~~~~~d----------~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 336 RGFTMLG----RNCPHLERLDLEECGLITD----------GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred hhhhhhh----cCChhhhhhcccccceehh----------hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 5554443 3456677776666654320 223333 46677777777777 577777777666666677
Q ss_pred CCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC-CChhHHHHHHHHHhc
Q 013056 370 NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLST 427 (450)
Q Consensus 370 ~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~l~~ 427 (450)
.|+.|.|+++..+.+. .. +.+..|++|+.+++-+|+ ++.+++..+...+.+
T Consensus 402 ~l~~lEL~n~p~i~d~---~L----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDA---TL----EHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred ccceeeecCCCCchHH---HH----HHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 7777777776553321 01 334566777777777775 666666666655544
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2e-09 Score=107.32 Aligned_cols=60 Identities=35% Similarity=0.427 Sum_probs=28.8
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
.++..|.+.+|++.. ++..+..+++++.|++++|.+++ ++ .+....+++.|++++|.++.
T Consensus 232 ~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~------i~----~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 232 KNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISS------IS----SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccccCCceeee-----ccchhccccccceeccccccccc------cc----cccccCccCEEeccCccccc
Confidence 444444455555443 23444445555555555555554 32 13444555555555555443
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=3.2e-09 Score=105.88 Aligned_cols=197 Identities=25% Similarity=0.291 Sum_probs=127.8
Q ss_pred EEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCC-CeeEEEcCCCCCCCCCchhhHH
Q 013056 189 SLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH-KIENLSIDISSFIENCPSSVVV 267 (450)
Q Consensus 189 ~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~ 267 (450)
.++++.+........+ .....++.|++.+|.+++.....-. .. +|+.|++++|.+..
T Consensus 97 ~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~i~~i~~~~~~---------~~~nL~~L~l~~N~i~~-------- 154 (394)
T COG4886 97 SLDLNLNRLRSNISEL-----LELTNLTSLDLDNNNITDIPPLIGL---------LKSNLKELDLSDNKIES-------- 154 (394)
T ss_pred eeeccccccccCchhh-----hcccceeEEecCCcccccCcccccc---------chhhcccccccccchhh--------
Confidence 4666666542222221 2336778888888877743332210 22 68888888888765
Q ss_pred HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE
Q 013056 268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 347 (450)
Q Consensus 268 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~ 347 (450)
++..+..+++|+.|++++|++.+ .+.... ..+.|+.|++++|.+.. +|..+. ....|++|.
T Consensus 155 -l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~-----~~~~L~~L~ls~N~i~~---------l~~~~~---~~~~L~~l~ 215 (394)
T COG4886 155 -LPSPLRNLPNLKNLDLSFNDLSD-LPKLLS-----NLSNLNNLDLSGNKISD---------LPPEIE---LLSALEELD 215 (394)
T ss_pred -hhhhhhccccccccccCCchhhh-hhhhhh-----hhhhhhheeccCCcccc---------Cchhhh---hhhhhhhhh
Confidence 33556678888888888888877 333221 25788888888888876 334332 225588888
Q ss_pred ccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhc
Q 013056 348 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLST 427 (450)
Q Consensus 348 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~ 427 (450)
+++|.+.. ++..+..++++..|.+++|++.+ .+ ..+..+++++.|++++|.++.. .. +..
T Consensus 216 ~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~------~~---~~~~~l~~l~~L~~s~n~i~~i-----~~-~~~ 275 (394)
T COG4886 216 LSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED------LP---ESIGNLSNLETLDLSNNQISSI-----SS-LGS 275 (394)
T ss_pred hcCCccee-----cchhhhhcccccccccCCceeee------cc---chhccccccceecccccccccc-----cc-ccc
Confidence 88885432 56667778888888888888776 22 3456667788888888888873 32 444
Q ss_pred CCCCCcEEECcCCCCCcccc
Q 013056 428 LRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 428 l~~~L~~L~L~~N~l~~~~~ 447 (450)
-.+++.|++++|.+....+
T Consensus 276 -~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 276 -LTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -cCccCEEeccCccccccch
Confidence 2448888888887765433
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=3.9e-08 Score=103.21 Aligned_cols=108 Identities=28% Similarity=0.420 Sum_probs=61.6
Q ss_pred CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHH
Q 013056 308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIR 387 (450)
Q Consensus 308 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~ 387 (450)
++.|+|++|.+.+..| ..++ .+++|+.|+|++|.++. .+|..+..+++|+.|+|++|+++..
T Consensus 420 v~~L~L~~n~L~g~ip--------~~i~---~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~--- 481 (623)
T PLN03150 420 IDGLGLDNQGLRGFIP--------NDIS---KLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS--- 481 (623)
T ss_pred EEEEECCCCCccccCC--------HHHh---CCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC---
Confidence 5566666666665444 4444 34566666666666654 3566666666666666666666543
Q ss_pred HHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056 388 SLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442 (450)
Q Consensus 388 ~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l 442 (450)
+| ..+..+++|+.|+|++|.++.. ++..+.....++..+++.+|..
T Consensus 482 --iP---~~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 482 --IP---ESLGQLTSLRILNLNGNSLSGR----VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred --Cc---hHHhcCCCCCEEECcCCccccc----CChHHhhccccCceEEecCCcc
Confidence 44 3455556666666666666654 4444433222355666666643
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=8.6e-10 Score=108.11 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=141.3
Q ss_pred hhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056 165 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 244 (450)
Q Consensus 165 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~ 244 (450)
...+++.|...+++..+..+..|+.+.|.+|.+-..... ..++..|+.|||+.|+++- .+..+| .
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-----i~~L~~lt~l~ls~NqlS~-lp~~lC---------~ 142 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-----ICNLEALTFLDLSSNQLSH-LPDGLC---------D 142 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-----hhhhhHHHHhhhccchhhc-CChhhh---------c
Confidence 344777788888887777777888888887775444333 3466778889999998873 333343 2
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
..|+.|-+++|+++. ++..++..+.|.+||.+.|.+.. .+..++. +.+|+.|.+..|++..
T Consensus 143 lpLkvli~sNNkl~~---------lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----l~slr~l~vrRn~l~~---- 203 (722)
T KOG0532|consen 143 LPLKVLIVSNNKLTS---------LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----LTSLRDLNVRRNHLED---- 203 (722)
T ss_pred CcceeEEEecCcccc---------CCcccccchhHHHhhhhhhhhhh-chHHhhh-----HHHHHHHHHhhhhhhh----
Confidence 668999999999877 56666777899999999998876 5665644 5789999999999876
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 404 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 404 (450)
+|..+.. -.|..||++.|+|.. ||-.+.+|..|++|-|.+|.+...-+..... +..--.+
T Consensus 204 -----lp~El~~----LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k------GkVHIFK 263 (722)
T KOG0532|consen 204 -----LPEELCS----LPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQICEK------GKVHIFK 263 (722)
T ss_pred -----CCHHHhC----CceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHHHHhc------cceeeee
Confidence 5666663 358999999999995 9999999999999999999997743333322 2222345
Q ss_pred EEEccCC
Q 013056 405 ELYLENC 411 (450)
Q Consensus 405 ~L~L~~n 411 (450)
+|+..-|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 6666666
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.4e-07 Score=97.23 Aligned_cols=85 Identities=35% Similarity=0.441 Sum_probs=38.6
Q ss_pred eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056 247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326 (450)
Q Consensus 247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 326 (450)
++.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+..+..+ ..+++|+.|+|++|.+.+..|
T Consensus 420 v~~L~L~~n~L~g--------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-----~~l~~L~~LdLs~N~lsg~iP--- 483 (623)
T PLN03150 420 IDGLGLDNQGLRG--------FIPNDISKLRHLQSINLSGNSIRGNIPPSL-----GSITSLEVLDLSYNSFNGSIP--- 483 (623)
T ss_pred EEEEECCCCCccc--------cCCHHHhCCCCCCEEECCCCcccCcCChHH-----hCCCCCCEEECCCCCCCCCCc---
Confidence 4444555554444 333344444555555555555444343333 224455555555555444333
Q ss_pred cccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355 (450)
Q Consensus 327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 355 (450)
..++ .+++|+.|+|++|.++.
T Consensus 484 -----~~l~---~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 484 -----ESLG---QLTSLRILNLNGNSLSG 504 (623)
T ss_pred -----hHHh---cCCCCCEEECcCCcccc
Confidence 3333 33445555555554443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.2e-08 Score=102.77 Aligned_cols=129 Identities=27% Similarity=0.258 Sum_probs=91.4
Q ss_pred CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056 246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 325 (450)
Q Consensus 246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 325 (450)
.|...+.++|.++. +-..+.-++.|++|||+.|+++... .+ ..++.|++|||+.|.+...
T Consensus 165 ~L~~a~fsyN~L~~---------mD~SLqll~ale~LnLshNk~~~v~--~L-----r~l~~LkhLDlsyN~L~~v---- 224 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL---------MDESLQLLPALESLNLSHNKFTKVD--NL-----RRLPKLKHLDLSYNCLRHV---- 224 (1096)
T ss_pred hHhhhhcchhhHHh---------HHHHHHHHHHhhhhccchhhhhhhH--HH-----Hhcccccccccccchhccc----
Confidence 35566677777654 4455666789999999999987622 22 2379999999999998742
Q ss_pred CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056 326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 405 (450)
Q Consensus 326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~ 405 (450)
|. ++ ... ..|..|++++|.++. -..+.++.+|+.||+++|-|.+. ..|.| +..+..|..
T Consensus 225 -----p~-l~-~~g-c~L~~L~lrnN~l~t------L~gie~LksL~~LDlsyNll~~h--seL~p-----LwsLs~L~~ 283 (1096)
T KOG1859|consen 225 -----PQ-LS-MVG-CKLQLLNLRNNALTT------LRGIENLKSLYGLDLSYNLLSEH--SELEP-----LWSLSSLIV 283 (1096)
T ss_pred -----cc-cc-hhh-hhheeeeecccHHHh------hhhHHhhhhhhccchhHhhhhcc--hhhhH-----HHHHHHHHH
Confidence 11 11 113 349999999999885 34578899999999999988653 22322 344478899
Q ss_pred EEccCCCCCh
Q 013056 406 LYLENCELSG 415 (450)
Q Consensus 406 L~L~~n~l~~ 415 (450)
|+|.+|.+-.
T Consensus 284 L~LeGNPl~c 293 (1096)
T KOG1859|consen 284 LWLEGNPLCC 293 (1096)
T ss_pred HhhcCCcccc
Confidence 9999998754
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=2.5e-07 Score=84.35 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=32.1
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
+++..+.+..|.|.+.. -.+.....+.+.-|+|+.|+|.+ ..++ +++..++.|..|.++++.+.+
T Consensus 199 pnv~sv~v~e~PlK~~s---~ek~se~~p~~~~LnL~~~~ids------wasv-D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTES---SEKGSEPFPSLSCLNLGANNIDS------WASV-DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchh---hcccCCCCCcchhhhhccccccc------HHHH-HHHcCCchhheeeccCCcccc
Confidence 45555555555554422 12233444555555666666554 2221 445555566666666665544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=3.3e-08 Score=99.05 Aligned_cols=234 Identities=23% Similarity=0.192 Sum_probs=136.7
Q ss_pred cccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCC
Q 013056 167 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHK 246 (450)
Q Consensus 167 l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~ 246 (450)
+.+..+.+..+...+..+.+|+.|++.+|.+...... ...+++|++|++++|.|++...-.- +..
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~l~~----------l~~ 141 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEGLST----------LTL 141 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccchhh----------ccc
Confidence 3345555554444566778899999988885543221 3467889999999998885432221 456
Q ss_pred eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056 247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326 (450)
Q Consensus 247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 326 (450)
|+.|++++|.|+.. ..+..++.|+.+++++|.+.......+ ..+.+++.+++++|.+........
T Consensus 142 L~~L~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~~-----~~~~~l~~l~l~~n~i~~i~~~~~ 206 (414)
T KOG0531|consen 142 LKELNLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDEL-----SELISLEELDLGGNSIREIEGLDL 206 (414)
T ss_pred hhhheeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhhh-----hhccchHHHhccCCchhcccchHH
Confidence 88899999988663 233347888999999998876433101 235788888888888764211000
Q ss_pred cccHH------HhhhCCCC---CCc--eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHh
Q 013056 327 RSGPL------FSLGAGKS---LQS--LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQ 395 (450)
Q Consensus 327 ~~~l~------~~l~~~~~---l~~--L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~ 395 (450)
...+. ..+..+.. +.. |+.+++++|.+.. ++..+..+..+..|+++.|++.. . .
T Consensus 207 ~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n~~~~------~----~ 271 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSNRISN------L----E 271 (414)
T ss_pred HHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-----ccccccccccccccchhhccccc------c----c
Confidence 00000 01111111 111 6677777777764 33556667777788887777765 2 2
Q ss_pred hcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 396 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 396 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
.+...+.+..+.+..|.+.......-...... ..+++.+.+.+|++...-
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSA-APTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccc-cccccccccccCcccccc
Confidence 23444566666666666553211111111333 334777777777776543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.9e-07 Score=85.12 Aligned_cols=40 Identities=38% Similarity=0.400 Sum_probs=18.5
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
+.+.-|+|+.|+|.+=. -..++.++++|+.|.+++|.+.|
T Consensus 224 p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CcchhhhhcccccccHH---HHHHHcCCchhheeeccCCcccc
Confidence 33444555555554311 11234455555555555555543
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=4.7e-08 Score=69.52 Aligned_cols=59 Identities=36% Similarity=0.511 Sum_probs=32.7
Q ss_pred ceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCC
Q 013056 342 SLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 413 (450)
Q Consensus 342 ~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l 413 (450)
+|++|++++|+|+. ++ ..+..+++|++|++++|.|+. ++. .+|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~-----i~~~~f~~l~~L~~L~l~~N~l~~------i~~--~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTE-----IPPDSFSNLPNLETLDLSNNNLTS------IPP--DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESE-----ECTTTTTTGTTESEEEETSSSESE------EET--TTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCc-----cCHHHHcCCCCCCEeEccCCccCc------cCH--HHHcCCCCCCEEeCcCCcC
Confidence 45556666665554 33 244556666666666666654 221 4455666666666666653
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.40 E-value=1.4e-06 Score=91.60 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=103.4
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
.+|++|++++...... .+....-..+|+|++|.+++-.+..+....+|. ++++|..||+|+++++..
T Consensus 122 ~nL~~LdI~G~~~~s~------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~----sFpNL~sLDIS~TnI~nl--- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA----SFPNLRSLDISGTNISNL--- 188 (699)
T ss_pred HhhhhcCccccchhhc------cHHHHHhhhCcccceEEecCceecchhHHHHhh----ccCccceeecCCCCccCc---
Confidence 6788999988643321 144444456899999999988776655455554 479999999999998851
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 404 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 404 (450)
.+++ ++++|++|.+.+=.+.... .+ ..+..+++|+.||+|..+..+.- + ++.-..+.-..+|+|+
T Consensus 189 -------~GIS---~LknLq~L~mrnLe~e~~~--~l-~~LF~L~~L~vLDIS~~~~~~~~-~-ii~qYlec~~~LpeLr 253 (699)
T KOG3665|consen 189 -------SGIS---RLKNLQVLSMRNLEFESYQ--DL-IDLFNLKKLRVLDISRDKNNDDT-K-IIEQYLECGMVLPELR 253 (699)
T ss_pred -------HHHh---ccccHHHHhccCCCCCchh--hH-HHHhcccCCCeeeccccccccch-H-HHHHHHHhcccCcccc
Confidence 3445 6688999988887776521 22 34677999999999987665432 1 1211125556689999
Q ss_pred EEEccCCCCChhHHHHHHH
Q 013056 405 ELYLENCELSGRGVSQLLD 423 (450)
Q Consensus 405 ~L~L~~n~l~~~g~~~l~~ 423 (450)
.||.|+..++...++.+.+
T Consensus 254 fLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 254 FLDCSGTDINEEILEELLN 272 (699)
T ss_pred EEecCCcchhHHHHHHHHH
Confidence 9999999888875544433
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=3.1e-08 Score=99.88 Aligned_cols=128 Identities=23% Similarity=0.208 Sum_probs=89.6
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
.|.+.+.++|.+.- .-..+ .-++.++.|+|++|++++. ..+ ..|+.|++|||+.|.++.
T Consensus 165 ~L~~a~fsyN~L~~-mD~SL-----qll~ale~LnLshNk~~~v----------~~L---r~l~~LkhLDlsyN~L~~-- 223 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESL-----QLLPALESLNLSHNKFTKV----------DNL---RRLPKLKHLDLSYNCLRH-- 223 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHH-----HHHHHhhhhccchhhhhhh----------HHH---Hhcccccccccccchhcc--
Confidence 56777888887754 22222 1257899999999998851 233 367999999999999885
Q ss_pred HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEEC
Q 013056 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 437 (450)
Q Consensus 358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L 437 (450)
+|..-..-..|+.|.|++|.++. + ..+.++++|+.||+++|-|.+..--...-.+.. |+.|+|
T Consensus 224 ---vp~l~~~gc~L~~L~lrnN~l~t------L----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~----L~~L~L 286 (1096)
T KOG1859|consen 224 ---VPQLSMVGCKLQLLNLRNNALTT------L----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS----LIVLWL 286 (1096)
T ss_pred ---ccccchhhhhheeeeecccHHHh------h----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH----HHHHhh
Confidence 55532222349999999999876 3 335566899999999998776432223333444 899999
Q ss_pred cCCCCC
Q 013056 438 ADNNLG 443 (450)
Q Consensus 438 ~~N~l~ 443 (450)
.||++-
T Consensus 287 eGNPl~ 292 (1096)
T KOG1859|consen 287 EGNPLC 292 (1096)
T ss_pred cCCccc
Confidence 999874
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=89.55 Aligned_cols=92 Identities=25% Similarity=0.301 Sum_probs=45.3
Q ss_pred hcCCCccEEEeecc-cChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhccccCCCCeeEEEcCCCC-CC
Q 013056 182 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FI 258 (450)
Q Consensus 182 ~~~~~L~~L~Ls~n-~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-i~ 258 (450)
..+++|++|+++++ ............+...+++|+.|+++++. +++.+...++.. |++|+.|.+.+|. ++
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~-------c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR-------CPNLETLSLSNCSNLT 283 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh-------CCCcceEccCCCCccc
Confidence 35566666666542 11111111111134445556666666664 566665555554 5556666655554 44
Q ss_pred CCCchhhHHHHHHhhcCCCCCCEEecCCC
Q 013056 259 ENCPSSVVVELVSFLSSGRSLCSLKLRHC 287 (450)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 287 (450)
+. .+.....++++|++|+++++
T Consensus 284 ~~-------gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 284 DE-------GLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hh-------HHHHHHHhcCcccEEeeecC
Confidence 41 34444445555666666655
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=1.6e-07 Score=66.75 Aligned_cols=61 Identities=34% Similarity=0.464 Sum_probs=43.2
Q ss_pred CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 381 (450)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 381 (450)
++|++|++++|.+....+ ..+..+++|++|++++|.|+. .-+.++..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~-----------~~f~~l~~L~~L~l~~N~l~~----i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-----------DSFSNLPNLETLDLSNNNLTS----IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-----------TTTTTGTTESEEEETSSSESE----EETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-----------HHHcCCCCCCEeEccCCccCc----cCHHHHcCCCCCCEEeCcCCcC
Confidence 467788888887775333 334466888888888888876 1234677888888888888875
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=88.81 Aligned_cols=220 Identities=22% Similarity=0.211 Sum_probs=121.8
Q ss_pred cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC--CCChhH--HHHHHHHHhccccCCCCeeEEEcCCCC-C
Q 013056 183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC--KLSPSF--VEGICRSLCSKRKRIHKIENLSIDISS-F 257 (450)
Q Consensus 183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~--~~~l~~~L~~~~~~~~~L~~L~L~~n~-i 257 (450)
.++.|+.|.+..+....... ...+...++.|+.|+++++ .+.... ...+... +.+|+.|+++.+. +
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-------CRKLKSLDLSGCGLV 256 (482)
T ss_pred hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhh-------cCCcCccchhhhhcc
Confidence 35788888887765221111 2333567788888888873 222222 1222222 6778888888776 6
Q ss_pred CCCCchhhHHHHHHhhcCCCCCCEEecCCCC-CChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056 258 IENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336 (450)
Q Consensus 258 ~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 336 (450)
++. .+......+++|++|.+.++. +++.+...+++. ++.|++|++++|..... ..+.....
T Consensus 257 sd~-------~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~~d------~~l~~~~~- 318 (482)
T KOG1947|consen 257 TDI-------GLSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGLTD------SGLEALLK- 318 (482)
T ss_pred Cch-------hHHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccchH------HHHHHHHH-
Confidence 662 222222347788888877775 777777777654 67788888887764310 11212222
Q ss_pred CCCCCceeEEEccCC----CCChhhHHH---------HHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC-
Q 013056 337 GKSLQSLRLLNLRGN----NLCKADARD---------LGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP- 402 (450)
Q Consensus 337 ~~~l~~L~~L~L~~n----~l~~~~~~~---------l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~- 402 (450)
++++|+.|.+... .+++.++.. ....+..++.++.+.+..+.+++.|...++ ..|+.
T Consensus 319 --~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l-------~gc~~l 389 (482)
T KOG1947|consen 319 --NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL-------RGCPNL 389 (482)
T ss_pred --hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh-------cCCccc
Confidence 3455444443333 244433211 122345677888888887777776654443 22332
Q ss_pred -------------cCEEEccCCC-CChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056 403 -------------LVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442 (450)
Q Consensus 403 -------------L~~L~L~~n~-l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l 442 (450)
++.|+++.|. .+..++...... ...++.+++.+...
T Consensus 390 ~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~----~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 390 TESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS----CSNLKDLDLSGCRV 439 (482)
T ss_pred chHHHHHhccCCccceEecccCccccccchHHHhhh----hhccccCCccCccc
Confidence 4677777775 555554444433 12267777666543
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=3.7e-08 Score=98.71 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=24.1
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
|+.+++++|.+... ...+..+ ..+..|++..|.+..
T Consensus 234 L~~l~l~~n~i~~~-----~~~~~~~-~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSGNRISRS-----PEGLENL-KNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhcccCccccc-----ccccccc-ccccccchhhccccc
Confidence 77888888887762 2334442 338888888887754
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.21 E-value=3.4e-06 Score=88.68 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=101.1
Q ss_pred CCCCCEEecCCCCC-ChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCC
Q 013056 276 GRSLCSLKLRHCHL-DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLC 354 (450)
Q Consensus 276 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~ 354 (450)
-.+|++||+++... ...=+..+ -..+|+|+.|.+++-.+... +...-+.++++|..||+++.+++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~ki----g~~LPsL~sL~i~~~~~~~~----------dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKI----GTMLPSLRSLVISGRQFDND----------DFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HHhhhhcCccccchhhccHHHHH----hhhCcccceEEecCceecch----------hHHHHhhccCccceeecCCCCcc
Confidence 36899999999743 33233333 34489999999998776531 11222357799999999999999
Q ss_pred hhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH--HHHHHHHHhcCCCCC
Q 013056 355 KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG--VSQLLDTLSTLRRPP 432 (450)
Q Consensus 355 ~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g--~~~l~~~l~~l~~~L 432 (450)
. + .+++++++|+.|.+.+=.+.+ .+.+ ..+-.+++|+.||+|.-...... +....+.-..++ .|
T Consensus 187 n-----l-~GIS~LknLq~L~mrnLe~e~------~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eL 252 (699)
T KOG3665|consen 187 N-----L-SGISRLKNLQVLSMRNLEFES------YQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-EL 252 (699)
T ss_pred C-----c-HHHhccccHHHHhccCCCCCc------hhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cc
Confidence 6 4 778999999999998866655 1111 23456799999999998754433 444555555555 49
Q ss_pred cEEECcCCCCCccc
Q 013056 433 TSLSIADNNLGRFC 446 (450)
Q Consensus 433 ~~L~L~~N~l~~~~ 446 (450)
+.||.++..+.++.
T Consensus 253 rfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 253 RFLDCSGTDINEEI 266 (699)
T ss_pred cEEecCCcchhHHH
Confidence 99999998887653
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=5.7e-07 Score=72.87 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=93.5
Q ss_pred CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChh
Q 013056 277 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKA 356 (450)
Q Consensus 277 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~ 356 (450)
..+..++|+.|.+.. .++.+ ..+. ....|...+|++|.+.+ +|..+.. ..+.+++|+|++|.|.+
T Consensus 27 kE~h~ldLssc~lm~-i~dav-y~l~-~~~el~~i~ls~N~fk~---------fp~kft~--kf~t~t~lNl~~neisd- 91 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAV-YMLS-KGYELTKISLSDNGFKK---------FPKKFTI--KFPTATTLNLANNEISD- 91 (177)
T ss_pred HHhhhcccccchhhH-HHHHH-HHHh-CCceEEEEecccchhhh---------CCHHHhh--ccchhhhhhcchhhhhh-
Confidence 457788999998854 34433 2222 24678888999998876 3343332 33688999999999997
Q ss_pred hHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEE
Q 013056 357 DARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLS 436 (450)
Q Consensus 357 ~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~ 436 (450)
+|+.+..++.|+.|+++.|.+.. .| ..+..+.++-.|+.-+|.+.+..+..+- +...-..+
T Consensus 92 ----vPeE~Aam~aLr~lNl~~N~l~~------~p---~vi~~L~~l~~Lds~~na~~eid~dl~~------s~~~al~~ 152 (177)
T KOG4579|consen 92 ----VPEELAAMPALRSLNLRFNPLNA------EP---RVIAPLIKLDMLDSPENARAEIDVDLFY------SSLPALIK 152 (177)
T ss_pred ----chHHHhhhHHhhhcccccCcccc------ch---HHHHHHHhHHHhcCCCCccccCcHHHhc------cccHHHHH
Confidence 89889999999999999999876 23 3344457888889888887764333221 12133345
Q ss_pred CcCCCCCcccc
Q 013056 437 IADNNLGRFCA 447 (450)
Q Consensus 437 L~~N~l~~~~~ 447 (450)
+.+++++++-+
T Consensus 153 lgnepl~~~~~ 163 (177)
T KOG4579|consen 153 LGNEPLGDETK 163 (177)
T ss_pred hcCCcccccCc
Confidence 56777777654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.8e-06 Score=54.11 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=23.5
Q ss_pred ceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 342 SLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 342 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
+|++|++++|+|++ ++..++++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 56666666666665 56556667777777777776665
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=1.2e-06 Score=71.11 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=87.1
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
..+..++|++|++... ......+.....|+..+|++|.+.+ .++.+.. ..+.+++|+|++|.|.+
T Consensus 27 kE~h~ldLssc~lm~i------~davy~l~~~~el~~i~ls~N~fk~-fp~kft~----kf~t~t~lNl~~neisd---- 91 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYI------ADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI----KFPTATTLNLANNEISD---- 91 (177)
T ss_pred HHhhhcccccchhhHH------HHHHHHHhCCceEEEEecccchhhh-CCHHHhh----ccchhhhhhcchhhhhh----
Confidence 4577889999987531 1345566677888889999998876 5555432 35689999999999997
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
+|..+. .++.|+.|+++.|.+.. .|+.+..+.+|-.||..+|.+..
T Consensus 92 -----vPeE~A---am~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 92 -----VPEELA---AMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred -----chHHHh---hhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCcccc
Confidence 677777 56899999999999985 78888888999999999998766
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.87 E-value=7.8e-06 Score=88.26 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=77.2
Q ss_pred cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056 183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 262 (450)
Q Consensus 183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~ 262 (450)
.+++|+.|-+..|.. ........++..++.|+.|||++|.=....|..+.+ +-+|++|+++.+.+..
T Consensus 543 ~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--------Li~LryL~L~~t~I~~--- 609 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--------LVHLRYLDLSDTGISH--- 609 (889)
T ss_pred CCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--------hhhhhcccccCCCccc---
Confidence 445788888888752 123333344678889999999988544456666655 5788899999988765
Q ss_pred hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC
Q 013056 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 317 (450)
Q Consensus 263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~ 317 (450)
+|..++.++.|.+|++..+.-....+..+ ..+++|++|.+..-.
T Consensus 610 ------LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 610 ------LPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA 653 (889)
T ss_pred ------cchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence 78888888999999998875433222222 236889998887665
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2e-05 Score=51.57 Aligned_cols=38 Identities=39% Similarity=0.502 Sum_probs=27.6
Q ss_pred CCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 369 PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 369 ~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
++|++|++++|+|++ +| ..+..+++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~------l~---~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD------LP---PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS------HG---GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc------cC---chHhCCCCCCEEEecCCCCCC
Confidence 468888888888887 54 347778888888888888776
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00012 Score=71.48 Aligned_cols=139 Identities=16% Similarity=0.268 Sum_probs=81.6
Q ss_pred HhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-
Q 013056 209 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC- 287 (450)
Q Consensus 209 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 287 (450)
+..+.+++.|++++|.|+... .. -.+|++|.+++|.-.. .++..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---------~L---P~sLtsL~Lsnc~nLt--------sLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---------VL---PNELTEITIENCNNLT--------TLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---------CC---CCCCcEEEccCCCCcc--------cCCchh--hhhhhheEccCcc
Confidence 445688999999999777432 11 3568999998764322 122222 157889999888
Q ss_pred CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC-CChhhHHHHHHHhh
Q 013056 288 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALV 366 (450)
Q Consensus 288 ~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~ 366 (450)
.+.. + ..+|+.|+++.+..... ..+. ++|+.|.+.+++ .... .++..+
T Consensus 106 ~L~s-----L-------P~sLe~L~L~~n~~~~L-------------~~LP--ssLk~L~I~~~n~~~~~---~lp~~L- 154 (426)
T PRK15386 106 EISG-----L-------PESVRSLEIKGSATDSI-------------KNVP--NGLTSLSINSYNPENQA---RIDNLI- 154 (426)
T ss_pred cccc-----c-------ccccceEEeCCCCCccc-------------ccCc--chHhheecccccccccc---cccccc-
Confidence 4432 1 35688888876654421 1111 456677765432 1110 112111
Q ss_pred cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC
Q 013056 367 HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE 412 (450)
Q Consensus 367 ~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~ 412 (450)
.++|++|++++|.... .| ..+. .+|+.|+++.|.
T Consensus 155 -PsSLk~L~Is~c~~i~------LP---~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 -SPSLKTLSLTGCSNII------LP---EKLP--ESLQSITLHIEQ 188 (426)
T ss_pred -CCcccEEEecCCCccc------Cc---cccc--ccCcEEEecccc
Confidence 1579999999887543 33 2233 688999988763
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.58 E-value=4.5e-05 Score=82.50 Aligned_cols=152 Identities=20% Similarity=0.121 Sum_probs=85.9
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCC--CChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK--LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 262 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~ 262 (450)
...+...+-+|.+..... ...++.|++|-+..|. +.......+.. ++.|..|+|++|.-..
T Consensus 523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~--------m~~LrVLDLs~~~~l~--- 585 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRS--------LPLLRVLDLSGNSSLS--- 585 (889)
T ss_pred hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhh--------CcceEEEECCCCCccC---
Confidence 445556665555332222 2345567777777775 33222222222 5778888888765433
Q ss_pred hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 342 (450)
Q Consensus 263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 342 (450)
.+|..++.+-+|++|+++++.+.. .|..+. ++..|.+|++..+.-....+ ..+. .+++
T Consensus 586 -----~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~-----~Lk~L~~Lnl~~~~~l~~~~--------~i~~---~L~~ 643 (889)
T KOG4658|consen 586 -----KLPSSIGELVHLRYLDLSDTGISH-LPSGLG-----NLKKLIYLNLEVTGRLESIP--------GILL---ELQS 643 (889)
T ss_pred -----cCChHHhhhhhhhcccccCCCccc-cchHHH-----HHHhhheecccccccccccc--------chhh---hccc
Confidence 577777777888888888887764 565553 35778888877765332111 2222 4577
Q ss_pred eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecC
Q 013056 343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDIS 377 (450)
Q Consensus 343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 377 (450)
|++|.+..-...... ..-..+..+.+|+.+...
T Consensus 644 Lr~L~l~~s~~~~~~--~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDK--LLLKELENLEHLENLSIT 676 (889)
T ss_pred ccEEEeeccccccch--hhHHhhhcccchhhheee
Confidence 777777665422211 233334555666655554
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=1.8e-05 Score=71.73 Aligned_cols=106 Identities=23% Similarity=0.212 Sum_probs=74.8
Q ss_pred CCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056 276 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355 (450)
Q Consensus 276 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 355 (450)
+.+.+.|+..++.+++.. ||+ .|+.|++|.||-|.|+. +..+..|++|+.|.|+.|.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~----kMp~lEVLsLSvNkIss-------------L~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICE----KMPLLEVLSLSVNKISS-------------LAPLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHH----hcccceeEEeecccccc-------------chhHHHHHHHHHHHHHhccccc
Confidence 457788999999998742 343 37999999999999875 2344478899999999999886
Q ss_pred hhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056 356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 407 (450)
Q Consensus 356 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~ 407 (450)
-+ . -.-+.++|+|++|-|..|.-..++...-=. ..+.-+++|+.||
T Consensus 78 ld--E-L~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 78 LD--E-LEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD 123 (388)
T ss_pred HH--H-HHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence 32 1 234678899999999998765443222111 2345558888886
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00029 Score=61.24 Aligned_cols=108 Identities=24% Similarity=0.241 Sum_probs=51.2
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
+...+||++|.+.... .+..++.|.+|.|++|+|+...+ .+.. .+++|+.|.|.+|+|..-|
T Consensus 43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p---------~L~~--~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDP---------DLDT--FLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccceecccccchhhcc-------cCCCccccceEEecCCcceeecc---------chhh--hccccceEEecCcchhhhh
Confidence 4555666666543311 11234556666666666654222 1221 2255666666666655422
Q ss_pred HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411 (450)
Q Consensus 358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 411 (450)
.+ .-+..+|.|+.|.+-+|.+++..-.-+ -.+..+++|+.||...-
T Consensus 105 --dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~-----yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 105 --DL-DPLASCPKLEYLTLLGNPVEHKKNYRL-----YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred --hc-chhccCCccceeeecCCchhcccCcee-----EEEEecCcceEeehhhh
Confidence 11 124455666666666666554211111 12445566666665544
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.28 E-value=0.00043 Score=67.68 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=86.8
Q ss_pred HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCC-C
Q 013056 179 CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-S 256 (450)
Q Consensus 179 ~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~ 256 (450)
..+..+.+++.|++++|.+.... . -..+|++|++++| .++ ..+..+ ..+|++|++++| .
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP-~-------LP~sLtsL~Lsnc~nLt-sLP~~L----------P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLP-V-------LPNELTEITIENCNNLT-TLPGSI----------PEGLEKLTVCHCPE 106 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccC-C-------CCCCCcEEEccCCCCcc-cCCchh----------hhhhhheEccCccc
Confidence 44556799999999999754432 1 2247999999987 432 222222 257899999998 4
Q ss_pred CCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056 257 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336 (450)
Q Consensus 257 i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 336 (450)
+.. ++ .+|+.|+++.+.... ...+ .++|+.|.+.+++-.... .++..++
T Consensus 107 L~s---------LP------~sLe~L~L~~n~~~~--L~~L-------PssLk~L~I~~~n~~~~~------~lp~~LP- 155 (426)
T PRK15386 107 ISG---------LP------ESVRSLEIKGSATDS--IKNV-------PNGLTSLSINSYNPENQA------RIDNLIS- 155 (426)
T ss_pred ccc---------cc------cccceEEeCCCCCcc--cccC-------cchHhheecccccccccc------ccccccC-
Confidence 322 22 468899998776543 1111 356788887543311000 0112222
Q ss_pred CCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC
Q 013056 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 380 (450)
Q Consensus 337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 380 (450)
++|++|++++|.... +|..+. .+|+.|+++.|.
T Consensus 156 ----sSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 ----PSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ----CcccEEEecCCCccc-----Cccccc--ccCcEEEecccc
Confidence 689999999887553 444333 588999988764
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=8.8e-05 Score=66.96 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=52.9
Q ss_pred CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhh
Q 013056 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDG 385 (450)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g 385 (450)
..|+.|.+.+..++. +..+..+++|++|.++.|.....+ .+......+|+|++|++++|+|.+
T Consensus 43 ~~le~ls~~n~gltt-------------~~~~P~Lp~LkkL~lsdn~~~~~~--~l~vl~e~~P~l~~l~ls~Nki~~-- 105 (260)
T KOG2739|consen 43 VELELLSVINVGLTT-------------LTNFPKLPKLKKLELSDNYRRVSG--GLEVLAEKAPNLKVLNLSGNKIKD-- 105 (260)
T ss_pred cchhhhhhhccceee-------------cccCCCcchhhhhcccCCcccccc--cceehhhhCCceeEEeecCCcccc--
Confidence 445555555555442 233445678888888888332211 244444556888888888888776
Q ss_pred HHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 386 IRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 386 ~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
+..+ ..+..+.+|..|++.+|..+.
T Consensus 106 lstl-----~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 106 LSTL-----RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccc-----chhhhhcchhhhhcccCCccc
Confidence 2222 235555778888888887544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=5.6e-05 Score=68.69 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChh
Q 013056 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 384 (450)
Q Consensus 305 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 384 (450)
+.+.+.|++.+|.+++ ++-+..++.|+.|.|+-|+|+. +. .+..|++|++|.|..|.|.+
T Consensus 18 l~~vkKLNcwg~~L~D-------------Isic~kMp~lEVLsLSvNkIss-----L~-pl~rCtrLkElYLRkN~I~s- 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-------------ISICEKMPLLEVLSLSVNKISS-----LA-PLQRCTRLKELYLRKNCIES- 77 (388)
T ss_pred HHHhhhhcccCCCccH-------------HHHHHhcccceeEEeecccccc-----ch-hHHHHHHHHHHHHHhccccc-
Confidence 4567888888888886 2333467888999999998885 43 37788889999999998877
Q ss_pred hHHHHHHHHHhhcCCCCCcCEEEccCCCC-ChhHHHHHHHHHhcCCCCCcEEE
Q 013056 385 GIRSLIPYFVQASERCNPLVELYLENCEL-SGRGVSQLLDTLSTLRRPPTSLS 436 (450)
Q Consensus 385 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~l~~l~~~L~~L~ 436 (450)
+..+ .-+..+++|+.|.|..|.= ...|-..=...+..++. |+.||
T Consensus 78 -----ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn-LkKLD 123 (388)
T KOG2123|consen 78 -----LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN-LKKLD 123 (388)
T ss_pred -----HHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc-chhcc
Confidence 3222 3467778888888888873 23344434445555443 77776
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00035 Score=63.19 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=36.5
Q ss_pred CCCCCCEEecCCC--CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC
Q 013056 275 SGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN 352 (450)
Q Consensus 275 ~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~ 352 (450)
.+++|+.|.++.| ++.. +...+++ .+++|++|++++|.|... ..+..++.+.+|..|++..|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~-~l~vl~e----~~P~l~~l~ls~Nki~~l----------stl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSG-GLEVLAE----KAPNLKVLNLSGNKIKDL----------STLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccc-cceehhh----hCCceeEEeecCCccccc----------cccchhhhhcchhhhhcccCC
Confidence 4567777777777 4433 3333333 246777777777766631 333333445666666666665
Q ss_pred CC
Q 013056 353 LC 354 (450)
Q Consensus 353 l~ 354 (450)
.+
T Consensus 128 ~~ 129 (260)
T KOG2739|consen 128 VT 129 (260)
T ss_pred cc
Confidence 44
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.00084 Score=58.44 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=89.9
Q ss_pred CCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhH
Q 013056 279 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADA 358 (450)
Q Consensus 279 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~ 358 (450)
=++++|.+.++....- + -....+...+||++|.+.. +..+.+++.|.+|.|.+|+|+.
T Consensus 21 e~e~~LR~lkip~ien--l----g~~~d~~d~iDLtdNdl~~-------------l~~lp~l~rL~tLll~nNrIt~--- 78 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--L----GATLDQFDAIDLTDNDLRK-------------LDNLPHLPRLHTLLLNNNRITR--- 78 (233)
T ss_pred ccccccccccccchhh--c----cccccccceecccccchhh-------------cccCCCccccceEEecCCccee---
Confidence 4788888888865322 2 2235688999999999874 2445578999999999999997
Q ss_pred HHHHHHhh-cCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEEC
Q 013056 359 RDLGSALV-HIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 437 (450)
Q Consensus 359 ~~l~~~l~-~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L 437 (450)
|.+.+. -+++|..|.|.+|+|..-| .+ ..+..|++|++|.+-+|+++...-... -.+.++++ |+.||.
T Consensus 79 --I~p~L~~~~p~l~~L~LtnNsi~~l~--dl-----~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~klp~-l~~LDF 147 (233)
T KOG1644|consen 79 --IDPDLDTFLPNLKTLILTNNSIQELG--DL-----DPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKLPS-LRTLDF 147 (233)
T ss_pred --eccchhhhccccceEEecCcchhhhh--hc-----chhccCCccceeeecCCchhcccCcee-EEEEecCc-ceEeeh
Confidence 555555 4678999999999885511 11 346778999999999999876321111 12445443 888887
Q ss_pred cC
Q 013056 438 AD 439 (450)
Q Consensus 438 ~~ 439 (450)
++
T Consensus 148 ~k 149 (233)
T KOG1644|consen 148 QK 149 (233)
T ss_pred hh
Confidence 64
No 71
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.83 E-value=0.0019 Score=63.05 Aligned_cols=234 Identities=15% Similarity=0.008 Sum_probs=119.9
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 263 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~ 263 (450)
..+.+++|+.|.....++.+....... ..++.++.+...+.- .....++. - ..++++..+++.|........
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~-~vl~~ld~s~tgirlD~l~~~l~~----g--~~tkl~~~kls~ng~s~skg~ 286 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGT-LVLFKLDRSTTGIRLDLLTSPLAA----G--RTTKLTFGKLSRNGTSPSKGE 286 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhh-hhhhcccccccccchhhccccccc----c--cccccchhhhccCCCCccccc
Confidence 456777888777666666665555543 356777777665432 22222211 0 035677778877766554444
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCC-CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056 264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSS-LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 342 (450)
Q Consensus 264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 342 (450)
.+.+..-+.+..-+++ +|++..+....+-+..+.-++..+-.. =-++|+..|...+. ..+.+..+=..
T Consensus 287 Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a----------~vleaci~g~R 355 (553)
T KOG4242|consen 287 EGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA----------EVLEACIFGQR 355 (553)
T ss_pred ccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccccc----------chhhcccccee
Confidence 4444555666666777 888877777665555443332222111 13445555544431 11121112244
Q ss_pred eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEec---------------------------------CCCCCChhhHHHH
Q 013056 343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDI---------------------------------SDNTIEDDGIRSL 389 (450)
Q Consensus 343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L---------------------------------s~N~l~~~g~~~l 389 (450)
+++|..+.|++..+|.... .+...++.+.+++ +.|.+... ....
T Consensus 356 ~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~ 432 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESA 432 (553)
T ss_pred eeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHH
Confidence 6666666666665553322 2334444444444 44443321 1111
Q ss_pred HHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 390 IPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 390 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+ ..+...+.+..|++++|..++.|..-++..+.. +.+++.+..+.|..+.
T Consensus 433 i----n~l~stqtl~kldisgn~mgd~gap~lpkalq~-n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 433 I----NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQS-NCRLRPIPDSLNLPED 482 (553)
T ss_pred H----HhhccCcccccccccCCCcccCCCCcCccccCC-CCccCCCCCCCCCccc
Confidence 1 333444556666666666666555555555555 4445555555555443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.00048 Score=59.91 Aligned_cols=53 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred hhCCCCCCceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCC-CCChhhHHHH
Q 013056 334 LGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSL 389 (450)
Q Consensus 334 l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g~~~l 389 (450)
+.++..++.++.|.+.+| .+.+.+.+.+.. -.++|+.|+|++| +||+.|+..|
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHH
Confidence 333444455555555555 444444444333 3345556666544 4555555444
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.73 E-value=0.0024 Score=37.10 Aligned_cols=22 Identities=45% Similarity=0.821 Sum_probs=12.4
Q ss_pred CCCCEEecCCCCCChhhHHHHH
Q 013056 369 PNLEILDISDNTIEDDGIRSLI 390 (450)
Q Consensus 369 ~~L~~L~Ls~N~l~~~g~~~l~ 390 (450)
++|++|||++|.|+++|+.+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3455555555555555555554
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.57 E-value=0.0038 Score=36.30 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHh
Q 013056 401 NPLVELYLENCELSGRGVSQLLDTLS 426 (450)
Q Consensus 401 ~~L~~L~L~~n~l~~~g~~~l~~~l~ 426 (450)
++|++|+|++|.|++.|+..+++.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999988774
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.42 E-value=0.002 Score=35.92 Aligned_cols=21 Identities=57% Similarity=0.953 Sum_probs=10.9
Q ss_pred CCCCEEecCCCCCChhhHHHH
Q 013056 369 PNLEILDISDNTIEDDGIRSL 389 (450)
Q Consensus 369 ~~L~~L~Ls~N~l~~~g~~~l 389 (450)
++|++|+|++|+|+++|+.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455566666666665555554
No 76
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.13 E-value=0.0051 Score=40.74 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=27.2
Q ss_pred hccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056 20 VYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK 80 (450)
Q Consensus 20 ~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~ 80 (450)
|.+||.|++..||++||+.++ .++...++.|.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl-------------------------~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDL-------------------------LRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHH-------------------------HHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHH-------------------------HHHHHHHHHHHHHHC
Confidence 457999999999999998777 445667788887773
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.90 E-value=0.0054 Score=34.14 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=17.3
Q ss_pred CCCcCEEEccCCCCChhHHHHHH
Q 013056 400 CNPLVELYLENCELSGRGVSQLL 422 (450)
Q Consensus 400 ~~~L~~L~L~~n~l~~~g~~~l~ 422 (450)
+++|++|+|++|.|++.|+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47899999999999999888765
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.016 Score=50.58 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=45.4
Q ss_pred CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCC-CCCCCCch
Q 013056 186 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS 263 (450)
Q Consensus 186 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n-~i~~~~~~ 263 (450)
.++.++-++..+ .......+..++.++.|.+.+| .+.+.+.+.+... ..+|+.|+++.| +||+
T Consensus 102 ~IeaVDAsds~I----~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~-------~~~L~~L~lsgC~rIT~---- 166 (221)
T KOG3864|consen 102 KIEAVDASDSSI----MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL-------APSLQDLDLSGCPRITD---- 166 (221)
T ss_pred eEEEEecCCchH----HHHHHHHHhccchhhhheeccccchhhHHHHHhccc-------ccchheeeccCCCeech----
Confidence 355555555542 1111122356666666777766 5666666655541 466666666655 4555
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCC
Q 013056 264 SVVVELVSFLSSGRSLCSLKLRHC 287 (450)
Q Consensus 264 ~~~~~l~~~l~~~~~L~~L~Ls~n 287 (450)
.-...+..+++|+.|.+.+-
T Consensus 167 ----~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 167 ----GGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ----hHHHHHHHhhhhHHHHhcCc
Confidence 33444555666666666543
No 79
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=95.32 E-value=0.025 Score=53.11 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=25.3
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHH
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 390 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~ 390 (450)
+..+...+.+-+..+.-+..++..+..++.|++|++.+|.|+..|+.++.
T Consensus 227 t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 227 THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 33444444444444444444445555555555555555555555555554
No 80
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=94.18 E-value=0.051 Score=53.41 Aligned_cols=209 Identities=16% Similarity=0.099 Sum_probs=114.0
Q ss_pred hcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCC
Q 013056 210 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 289 (450)
Q Consensus 210 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 289 (450)
...+.+++++++.|.+.+..+..+... .--++++.|..++...+ .+. .=..-..+.+++|+.|..
T Consensus 162 rpnpr~r~~dls~npi~dkvpihl~~p----------~~pl~lr~c~lsskfis----~l~-~qsg~~~lteldls~n~~ 226 (553)
T KOG4242|consen 162 RPNPRARQHDLSPNPIGDKVPIHLPQP----------GNPLSLRVCELSSKFIS----KLL-IQSGRLWLTELDLSTNGG 226 (553)
T ss_pred CCcchhhhhccCCCcccccCCccccCC----------CCccchhhhhhhhhHHH----Hhh-hhhccccccccccccCCC
Confidence 344567778888888877776665431 11256666666652222 111 111235678888888887
Q ss_pred ChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh----hhHHHHHHHh
Q 013056 290 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK----ADARDLGSAL 365 (450)
Q Consensus 290 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~~l 365 (450)
.+..+..+... .....++.++.+...+.- +..+ ..+. ...-+.+...+++.|.... +|...--+.+
T Consensus 227 Kddip~~~n~~--a~~~vl~~ld~s~tgirl---D~l~----~~l~-~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~f 296 (553)
T KOG4242|consen 227 KDDIPRTLNKK--AGTLVLFKLDRSTTGIRL---DLLT----SPLA-AGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTF 296 (553)
T ss_pred CccchhHHHHh--hhhhhhhcccccccccch---hhcc----cccc-cccccccchhhhccCCCCccccccccccccccc
Confidence 77666654322 223567777777776542 0000 1111 1123567777777775432 2222233334
Q ss_pred hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 366 VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 366 ~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
..-+++ +|++......++-.+.++-. .+-..-+.=-++++..|.....- ..++... ...+++|++..|.+.++
T Consensus 297 S~~~sg-hln~~~~~~psE~lks~LLg--la~ne~t~g~rldl~~cp~~~a~---vleaci~-g~R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 297 SPDPSG-HLNSRPRYTPSEKLKSMLLG--LAENEATLGARLDLRRCPLERAE---VLEACIF-GQRVQVLLQRDNNLDGE 369 (553)
T ss_pred CcCccc-ccccccccCchhhhhhhhcc--cccccccccccCChhhccccccc---hhhcccc-ceeeeEeeccccccccc
Confidence 445677 88888888777766655421 11111122236677777765531 2233333 33488888888888888
Q ss_pred cccCC
Q 013056 446 CANSG 450 (450)
Q Consensus 446 ~~~~~ 450 (450)
+...|
T Consensus 370 g~~vg 374 (553)
T KOG4242|consen 370 GGAVG 374 (553)
T ss_pred ccccc
Confidence 77654
No 81
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=93.95 E-value=0.18 Score=47.60 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCE
Q 013056 203 ALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCS 281 (450)
Q Consensus 203 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~ 281 (450)
.....+-.+-+.|+..+++++ .|.......++.++... ...+.+.+.+.+..+ ..+-.++..+.-+++|++
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~n----t~vk~Fsla~tr~~d----~vA~a~a~ml~~n~sl~s 259 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNN----THVKKFSLANTRSSD----PVAFAIAEMLKENKSLTS 259 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcC----chhhhhhhhcccCCc----hhHHHHHHHHhhcchhhh
Confidence 334444567789999999988 78888888888888874 778888888877766 333367777788899999
Q ss_pred EecCCCCCChhHHHHHHHHHhhCCCCCcEEe
Q 013056 282 LKLRHCHLDRDFGRMVFSSLLEASSSLSILD 312 (450)
Q Consensus 282 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~ 312 (450)
|++.+|.|++.+...+..+|..+ .+|.++.
T Consensus 260 lnvesnFItg~gi~a~~~al~~n-~tl~el~ 289 (353)
T KOG3735|consen 260 LNVESNFITGLGIMALLRALQSN-KSLTELK 289 (353)
T ss_pred eeccccccccHHHHHHHHHHhcc-chhhHhh
Confidence 99999999999998888887665 5555553
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.74 E-value=0.074 Score=30.12 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=10.6
Q ss_pred CCcCEEEccCCC-CChhHHHHH
Q 013056 401 NPLVELYLENCE-LSGRGVSQL 421 (450)
Q Consensus 401 ~~L~~L~L~~n~-l~~~g~~~l 421 (450)
++|++|+|++|. ||+.|+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 445555555553 555554444
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.68 E-value=0.062 Score=30.44 Aligned_cols=21 Identities=48% Similarity=0.839 Sum_probs=10.6
Q ss_pred CCCCEEecCCC-CCChhhHHHH
Q 013056 369 PNLEILDISDN-TIEDDGIRSL 389 (450)
Q Consensus 369 ~~L~~L~Ls~N-~l~~~g~~~l 389 (450)
++|++|+|+++ .|+|.|+.++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 44555555554 3555555444
No 84
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=93.48 E-value=0.068 Score=35.30 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=27.1
Q ss_pred hhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056 18 PYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK 80 (450)
Q Consensus 18 ~~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~ 80 (450)
+++.+||.|++..|+.+|++..+. +....++.|+++++
T Consensus 1 ~~~~~LP~~il~~Il~~l~~~~~~-------------------------~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 1 FPLSDLPDEILQEILSYLDPKDLL-------------------------RLSLVSKRWRSLVD 38 (48)
T ss_dssp -HHHHS-HHHHHHHHHTS-HHHHH-------------------------HHCTT-HHHHHHHT
T ss_pred CCHHHCCHHHHHHHHHHCcHHHHH-------------------------HHHHHhhHHHHHHc
Confidence 467899999999999999977763 44566778877775
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.75 E-value=0.087 Score=26.54 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=3.3
Q ss_pred CCEEecCCCCC
Q 013056 371 LEILDISDNTI 381 (450)
Q Consensus 371 L~~L~Ls~N~l 381 (450)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444433
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.19 E-value=0.12 Score=27.99 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=9.6
Q ss_pred CcEEECcCCCCCcccc
Q 013056 432 PTSLSIADNNLGRFCA 447 (450)
Q Consensus 432 L~~L~L~~N~l~~~~~ 447 (450)
|++|||++|+|+ .+|
T Consensus 2 L~~Ldls~n~l~-~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIP 16 (22)
T ss_dssp ESEEEETSSEES-EEG
T ss_pred ccEEECCCCcCE-eCC
Confidence 666777777666 444
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.13 E-value=0.42 Score=38.83 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=6.0
Q ss_pred hcCCCCCEEecCC
Q 013056 366 VHIPNLEILDISD 378 (450)
Q Consensus 366 ~~~~~L~~L~Ls~ 378 (450)
..+++|+.+++..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 3455555555544
No 88
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=87.33 E-value=0.36 Score=30.28 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=16.0
Q ss_pred CchHHHHHHHhcCChhhh
Q 013056 23 LPADLFDILLTCLPPLAL 40 (450)
Q Consensus 23 lp~~ll~~~~~~l~~~~~ 40 (450)
||.|++..|+++|++.++
T Consensus 1 lP~~ll~~I~~~l~~~d~ 18 (41)
T smart00256 1 LPDEILEEILSKLPPKDL 18 (41)
T ss_pred CCHHHHHHHHHcCCHHHH
Confidence 799999999999997666
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.07 E-value=0.94 Score=36.74 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+.+|+.+.+.. .+.. .-...+.++++|+.+++..+ +...+. ..+..+.+|+.+.+.. .+....
T Consensus 11 ~~~l~~i~~~~-~~~~--------I~~~~F~~~~~l~~i~~~~~-~~~i~~-----~~F~~~~~l~~i~~~~-~~~~i~- 73 (129)
T PF13306_consen 11 CSNLESITFPN-TIKK--------IGENAFSNCTSLKSINFPNN-LTSIGD-----NAFSNCKSLESITFPN-NLKSIG- 73 (129)
T ss_dssp -TT--EEEETS-T--E--------E-TTTTTT-TT-SEEEESST-TSCE-T-----TTTTT-TT-EEEEETS-TT-EE--
T ss_pred CCCCCEEEECC-CeeE--------eChhhccccccccccccccc-ccccce-----eeeecccccccccccc-cccccc-
Confidence 44677777654 2333 12234556667777777654 333111 1123445677777754 222110
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCC
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISD 378 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~ 378 (450)
. ..+..+++|+.+++..+ +.. ++. .+.++ .|+.+.+..
T Consensus 74 --------~--~~F~~~~~l~~i~~~~~-~~~-----i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 --------D--NAFSNCTNLKNIDIPSN-ITE-----IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp --------T--TTTTT-TTECEEEETTT--BE-----EHTTTTTT--T--EEE-TT
T ss_pred --------c--ccccccccccccccCcc-ccE-----EchhhhcCC-CceEEEECC
Confidence 1 23335567777777554 332 222 23344 667766654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.63 E-value=1.4 Score=44.50 Aligned_cols=65 Identities=32% Similarity=0.360 Sum_probs=31.2
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC--CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN--TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N--~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
+.+..++|++|++..-. .+.......|.|.+|+||+| .+.+ .+.+ ..++ ...|++|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~------~~el-~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISS------ESEL-DKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcc------hhhh-hhhc-CCCHHHeeecCCcccc
Confidence 45555556666554311 23333344566666666666 3333 1110 1111 1456667777776543
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.50 E-value=1.7 Score=24.30 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=8.6
Q ss_pred CCCCEEecCCCCCCh
Q 013056 369 PNLEILDISDNTIED 383 (450)
Q Consensus 369 ~~L~~L~Ls~N~l~~ 383 (450)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666665554
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.50 E-value=1.7 Score=24.30 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=8.6
Q ss_pred CCCCEEecCCCCCCh
Q 013056 369 PNLEILDISDNTIED 383 (450)
Q Consensus 369 ~~L~~L~Ls~N~l~~ 383 (450)
++|++|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666665554
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.69 E-value=5.4 Score=40.58 Aligned_cols=92 Identities=24% Similarity=0.239 Sum_probs=46.7
Q ss_pred HHHHhcCCCccEEEccCCCCCh-hHHHHHHHHHhccccCCCCeeEEEcCCC--CCCCCCchhhHHHHHHhhcCCCCCCEE
Q 013056 206 KLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLSIDIS--SFIENCPSSVVVELVSFLSSGRSLCSL 282 (450)
Q Consensus 206 ~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n--~i~~~~~~~~~~~l~~~l~~~~~L~~L 282 (450)
.....+.+.+..++|++|++.. ..+.++... .++|+.|+|++| .+.. .. ++.+ + +...|++|
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~-------apklk~L~LS~N~~~~~~--~~----el~K-~-k~l~Leel 275 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQI-------APKLKTLDLSHNHSKISS--ES----ELDK-L-KGLPLEEL 275 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHh-------cchhheeecccchhhhcc--hh----hhhh-h-cCCCHHHe
Confidence 3334566677777777776653 223333332 466777777777 2222 00 1111 1 23456777
Q ss_pred ecCCCCCChhHH--HHHHHHHhhCCCCCcEEe
Q 013056 283 KLRHCHLDRDFG--RMVFSSLLEASSSLSILD 312 (450)
Q Consensus 283 ~Ls~n~l~~~~~--~~l~~~L~~~~~~L~~L~ 312 (450)
-|.+|.+..... ..-..++....++|..||
T Consensus 276 ~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 276 VLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred eecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 777777654322 223334444556666654
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.94 E-value=2.5 Score=23.92 Aligned_cols=15 Identities=53% Similarity=0.733 Sum_probs=9.4
Q ss_pred CCCCEEecCCCCCCh
Q 013056 369 PNLEILDISDNTIED 383 (450)
Q Consensus 369 ~~L~~L~Ls~N~l~~ 383 (450)
.+|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666644
No 95
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.18 E-value=0.086 Score=47.24 Aligned_cols=86 Identities=16% Similarity=-0.014 Sum_probs=42.6
Q ss_pred cCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCC
Q 013056 274 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNL 353 (450)
Q Consensus 274 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l 353 (450)
.+....+.||++.|++-.-+.. + +.++.+..||++.|.+.- +|...+ ....++.+++..|+.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~-----s~~t~~~rl~~sknq~~~---------~~~d~~---q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-F-----SILTRLVRLDLSKNQIKF---------LPKDAK---QQRETVNAASHKNNH 100 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-h-----HHHHHHHHHhccHhhHhh---------ChhhHH---HHHHHHHHHhhccch
Confidence 3445566666666654332211 0 112445556666655442 333333 223445555555555
Q ss_pred ChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056 354 CKADARDLGSALVHIPNLEILDISDNTIE 382 (450)
Q Consensus 354 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 382 (450)
+. .|.+.+..++++.+++-+|.++
T Consensus 101 ~~-----~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 101 SQ-----QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-----CCccccccCCcchhhhccCcch
Confidence 53 5555666666666666666553
No 96
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=65.67 E-value=15 Score=29.10 Aligned_cols=65 Identities=25% Similarity=0.488 Sum_probs=46.7
Q ss_pred hhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHhcccCC---CCCCCCCcch
Q 013056 19 YVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG---FTDQIEPVDW 95 (450)
Q Consensus 19 ~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~~~w~~---~~~~~~~~~~ 95 (450)
.+..+|++|+.-|+.+.+|.-|.++... ++. .......-|++++...++. ......+.+|
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~-------np~----------l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~W 65 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDN-------NPH----------LIEDTDELWKKLIKRDFPEESKRQKPKEPESW 65 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHh-------CCC----------cchhhHHHHHHHHHhHCcChhhcccccccchH
Confidence 4678999999999999999999888821 111 1233456799999998875 2233335689
Q ss_pred HHHHH
Q 013056 96 QQRYW 100 (450)
Q Consensus 96 ~~~~~ 100 (450)
...|.
T Consensus 66 r~~Y~ 70 (109)
T PF06881_consen 66 RELYE 70 (109)
T ss_pred HHHHH
Confidence 88885
No 97
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.09 E-value=0.12 Score=46.28 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChh
Q 013056 305 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDD 384 (450)
Q Consensus 305 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~ 384 (450)
......||++.|++-.. -..+ +.++.|..|+++.|.|. .+|+.++....++++++-.|..+.
T Consensus 41 ~kr~tvld~~s~r~vn~---------~~n~---s~~t~~~rl~~sknq~~-----~~~~d~~q~~e~~~~~~~~n~~~~- 102 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL---------GKNF---SILTRLVRLDLSKNQIK-----FLPKDAKQQRETVNAASHKNNHSQ- 102 (326)
T ss_pred cceeeeehhhhhHHHhh---------ccch---HHHHHHHHHhccHhhHh-----hChhhHHHHHHHHHHHhhccchhh-
Confidence 46788889988887641 1222 34567888888888776 488888888888889988888776
Q ss_pred hHHHHHHHHHhhcCCCCCcCEEEccCCCCChh
Q 013056 385 GIRSLIPYFVQASERCNPLVELYLENCELSGR 416 (450)
Q Consensus 385 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 416 (450)
.| .+++..++++++++..|.++..
T Consensus 103 -----~p---~s~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 103 -----QP---KSQKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred -----CC---ccccccCCcchhhhccCcchHH
Confidence 55 6788889999999999987763
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.60 E-value=4.6 Score=22.84 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=7.8
Q ss_pred CcCEEEccCCCCCh
Q 013056 402 PLVELYLENCELSG 415 (450)
Q Consensus 402 ~L~~L~L~~n~l~~ 415 (450)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555554
No 99
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=49.45 E-value=6.5 Score=37.09 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=39.3
Q ss_pred chhhccCchHHHHHHHhcCCh--hhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHhcccCCCCCCCC---
Q 013056 17 IPYVYELPADLFDILLTCLPP--LALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE--- 91 (450)
Q Consensus 17 ~~~~~~lp~~ll~~~~~~l~~--~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~~~w~~~~~~~~--- 91 (450)
++-|..||.|+|-+||...=+ .+++++. + |.-.|+.-..++-....|+..|-..|........
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~------~------~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~ 171 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLE------Q------LSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKI 171 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHH------H------hHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhh
Confidence 445677999999999877532 1111111 1 2333333333444455688777777876433322
Q ss_pred -----CcchHHHH
Q 013056 92 -----PVDWQQRY 99 (450)
Q Consensus 92 -----~~~~~~~~ 99 (450)
..+|+.++
T Consensus 172 ~~sky~~SWR~Mf 184 (366)
T KOG2997|consen 172 LQSKYYTSWREMF 184 (366)
T ss_pred hhhHHHhHHHHHH
Confidence 34577665
No 100
>PF13013 F-box-like_2: F-box-like domain
Probab=31.43 E-value=36 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.5
Q ss_pred hccCchHHHHHHHhcCChhhh
Q 013056 20 VYELPADLFDILLTCLPPLAL 40 (450)
Q Consensus 20 ~~~lp~~ll~~~~~~l~~~~~ 40 (450)
+.+||+||++.||.+-..+.+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l 42 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPIL 42 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHH
Confidence 667999999999998875555
No 101
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=26.53 E-value=47 Score=31.85 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.8
Q ss_pred hccCc----hHHHHHHHhcCChhhh
Q 013056 20 VYELP----ADLFDILLTCLPPLAL 40 (450)
Q Consensus 20 ~~~lp----~~ll~~~~~~l~~~~~ 40 (450)
|..|| .|+-..|+++|+.+.|
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sL 99 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSL 99 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhh
Confidence 45688 8999999999998777
Done!