Query 013056
Match_columns 450
No_of_seqs 376 out of 2938
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 03:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3goz_A Leucine-rich repeat-con 99.9 1.1E-26 3.9E-31 227.3 19.4 266 163-447 23-301 (362)
2 2ca6_A RAN GTPase-activating p 99.9 7.8E-26 2.7E-30 223.3 23.5 266 163-447 33-320 (386)
3 1z7x_W Ribonuclease inhibitor; 99.9 7.2E-26 2.5E-30 228.6 23.5 263 163-447 29-301 (461)
4 2ca6_A RAN GTPase-activating p 99.9 1.2E-25 4.1E-30 221.9 24.5 232 182-427 91-331 (386)
5 1z7x_W Ribonuclease inhibitor; 99.9 8.1E-26 2.8E-30 228.2 23.1 265 164-447 87-358 (461)
6 3goz_A Leucine-rich repeat-con 99.9 7.1E-26 2.4E-30 221.7 18.2 258 168-443 4-266 (362)
7 2ast_B S-phase kinase-associat 99.9 3.8E-24 1.3E-28 206.9 19.8 232 164-448 72-311 (336)
8 3rgz_A Protein brassinosteroid 99.9 1.6E-24 5.3E-29 232.5 2.8 244 165-450 421-724 (768)
9 3un9_A NLR family member X1; l 99.9 2E-22 6.9E-27 197.2 15.4 135 278-423 127-261 (372)
10 1ogq_A PGIP-2, polygalacturona 99.9 9.2E-25 3.2E-29 209.3 -3.1 232 163-449 51-287 (313)
11 3v47_A TOLL-like receptor 5B a 99.9 8.4E-23 2.9E-27 205.8 7.7 248 163-447 80-412 (455)
12 3un9_A NLR family member X1; l 99.9 5.4E-21 1.8E-25 187.1 18.6 209 185-416 72-285 (372)
13 3rgz_A Protein brassinosteroid 99.9 2.5E-23 8.4E-28 223.2 2.0 233 163-448 395-698 (768)
14 3v47_A TOLL-like receptor 5B a 99.9 8.7E-22 3E-26 198.4 10.2 116 163-297 55-174 (455)
15 1ozn_A Reticulon 4 receptor; N 99.8 4.9E-22 1.7E-26 187.7 5.8 206 185-444 32-239 (285)
16 1wwl_A Monocyte differentiatio 99.8 2.8E-22 9.5E-27 192.0 3.0 237 164-445 65-311 (312)
17 2z66_A Variable lymphocyte rec 99.8 4E-22 1.4E-26 190.3 3.2 232 162-446 28-264 (306)
18 2z80_A TOLL-like receptor 2, v 99.8 2E-21 6.8E-26 189.3 8.0 235 163-447 53-318 (353)
19 4fcg_A Uncharacterized protein 99.8 9.2E-23 3.2E-27 196.7 -2.3 225 163-444 82-315 (328)
20 1xku_A Decorin; proteoglycan, 99.8 1.3E-21 4.4E-26 188.8 4.8 229 163-444 77-307 (330)
21 4fcg_A Uncharacterized protein 99.8 3.1E-22 1.1E-26 193.0 0.5 213 183-448 79-295 (328)
22 2id5_A Lingo-1, leucine rich r 99.8 1.5E-21 5E-26 198.0 5.1 229 163-445 81-311 (477)
23 3o6n_A APL1; leucine-rich repe 99.8 9.7E-22 3.3E-26 194.1 3.1 236 163-445 70-333 (390)
24 4fmz_A Internalin; leucine ric 99.8 7.2E-20 2.5E-24 177.6 16.1 218 163-447 111-328 (347)
25 2p1m_B Transport inhibitor res 99.8 3.7E-19 1.3E-23 185.1 21.5 137 163-316 106-245 (594)
26 3zyj_A Leucine-rich repeat-con 99.8 1.2E-21 4.1E-26 196.7 2.3 228 162-444 64-293 (440)
27 2z66_A Variable lymphocyte rec 99.8 1E-21 3.4E-26 187.4 0.9 228 166-447 11-240 (306)
28 1ogq_A PGIP-2, polygalacturona 99.8 7.5E-23 2.6E-27 196.0 -7.0 226 163-444 77-306 (313)
29 2ast_B S-phase kinase-associat 99.8 9.5E-20 3.3E-24 175.9 14.6 210 185-445 70-286 (336)
30 3ogk_B Coronatine-insensitive 99.8 9.2E-19 3.2E-23 182.1 22.9 249 163-445 113-393 (592)
31 3zyi_A Leucine-rich repeat-con 99.8 2.3E-21 7.8E-26 195.3 2.9 229 162-445 75-305 (452)
32 3oja_B Anopheles plasmodium-re 99.8 2.5E-21 8.4E-26 201.9 3.2 233 163-445 76-339 (597)
33 3o6n_A APL1; leucine-rich repe 99.8 1.3E-21 4.4E-26 193.3 -0.8 230 163-445 94-354 (390)
34 3t6q_A CD180 antigen; protein- 99.8 2.4E-21 8E-26 202.4 0.9 94 339-447 447-540 (606)
35 1ozn_A Reticulon 4 receptor; N 99.8 3.4E-21 1.2E-25 181.9 1.7 231 162-447 32-265 (285)
36 4fmz_A Internalin; leucine ric 99.8 1.2E-19 4.2E-24 176.0 12.5 230 148-444 110-347 (347)
37 3t6q_A CD180 antigen; protein- 99.8 1.4E-20 4.8E-25 196.5 5.1 135 163-322 58-195 (606)
38 2id5_A Lingo-1, leucine rich r 99.8 1.2E-20 4.1E-25 191.3 3.8 232 163-447 57-289 (477)
39 1wwl_A Monocyte differentiatio 99.8 3.5E-20 1.2E-24 177.4 6.7 210 163-416 96-311 (312)
40 3oja_B Anopheles plasmodium-re 99.8 3.9E-21 1.3E-25 200.4 -0.0 231 163-445 100-360 (597)
41 4glp_A Monocyte differentiatio 99.8 4.7E-21 1.6E-25 183.3 0.5 216 183-446 89-310 (310)
42 2ft3_A Biglycan; proteoglycan, 99.8 2.8E-21 9.6E-26 186.6 -1.1 231 163-443 55-307 (332)
43 3zyj_A Leucine-rich repeat-con 99.8 1.6E-20 5.6E-25 188.4 4.3 224 168-447 49-272 (440)
44 1xku_A Decorin; proteoglycan, 99.8 1.5E-20 5.3E-25 181.2 3.8 225 163-445 53-278 (330)
45 3zyi_A Leucine-rich repeat-con 99.8 2.1E-20 7E-25 188.3 4.6 223 169-447 61-283 (452)
46 4eco_A Uncharacterized protein 99.8 1.2E-20 3.9E-25 198.1 2.7 134 163-319 207-366 (636)
47 3ogk_B Coronatine-insensitive 99.8 3E-18 1E-22 178.3 20.5 237 168-446 276-529 (592)
48 4ecn_A Leucine-rich repeat pro 99.8 2.4E-20 8.1E-25 200.2 4.5 222 177-443 440-686 (876)
49 4eco_A Uncharacterized protein 99.8 4.7E-21 1.6E-25 201.1 -0.9 221 172-444 193-447 (636)
50 3o53_A Protein LRIM1, AGAP0063 99.8 7E-21 2.4E-25 182.6 0.3 131 245-414 120-250 (317)
51 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-20 1.1E-24 178.0 4.6 215 163-443 35-250 (317)
52 4glp_A Monocyte differentiatio 99.8 1.9E-20 6.5E-25 179.0 2.7 213 163-416 92-309 (310)
53 3rfs_A Internalin B, repeat mo 99.8 2.3E-20 7.8E-25 175.0 2.7 204 181-448 37-240 (272)
54 3vq2_A TLR4, TOLL-like recepto 99.8 1.4E-20 4.7E-25 196.6 0.5 163 244-447 398-562 (606)
55 2z62_A TOLL-like receptor 4, v 99.8 2.4E-20 8.3E-25 175.2 1.6 209 185-446 28-240 (276)
56 2z80_A TOLL-like receptor 2, v 99.8 1E-19 3.5E-24 177.2 5.6 225 163-427 101-329 (353)
57 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-20 7.3E-25 195.1 0.4 226 163-444 308-535 (606)
58 2z7x_B TOLL-like receptor 1, v 99.8 2.8E-19 9.7E-24 183.1 8.5 229 163-447 248-485 (520)
59 4ecn_A Leucine-rich repeat pro 99.8 1.2E-19 4E-24 194.8 5.7 183 163-383 449-658 (876)
60 2z7x_B TOLL-like receptor 1, v 99.8 5.7E-19 2E-23 180.9 10.6 140 163-322 70-263 (520)
61 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-19 4.6E-24 191.7 5.9 242 163-447 382-626 (680)
62 1h6u_A Internalin H; cell adhe 99.8 5E-19 1.7E-23 169.0 8.5 191 185-444 41-231 (308)
63 1p9a_G Platelet glycoprotein I 99.8 1.1E-19 3.6E-24 172.1 3.5 209 164-427 12-222 (290)
64 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.7E-24 184.5 3.8 215 163-443 35-250 (487)
65 3oja_A Leucine-rich immune mol 99.8 5.3E-20 1.8E-24 186.8 1.5 212 163-438 59-270 (487)
66 2o6q_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 168.3 4.7 202 164-415 18-219 (270)
67 1o6v_A Internalin A; bacterial 99.8 5.5E-18 1.9E-22 171.2 15.2 82 340-444 308-389 (466)
68 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-20 1.1E-24 179.1 -1.3 229 163-441 103-331 (332)
69 1io0_A Tropomodulin; LRR prote 99.8 1.5E-17 5.1E-22 146.4 15.5 140 266-417 25-167 (185)
70 2o6q_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 168.7 3.3 204 185-445 16-220 (270)
71 2z62_A TOLL-like receptor 4, v 99.8 8.6E-20 2.9E-24 171.4 1.0 220 162-427 28-252 (276)
72 2z63_A TOLL-like receptor 4, v 99.7 7.4E-20 2.5E-24 189.4 -0.4 229 164-448 306-536 (570)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.5E-19 1.6E-23 183.5 5.1 127 162-318 52-181 (562)
74 1ziw_A TOLL-like receptor 3; i 99.7 1.9E-18 6.6E-23 182.8 9.7 239 162-447 25-265 (680)
75 1o6v_A Internalin A; bacterial 99.7 4.8E-18 1.6E-22 171.7 11.9 229 148-447 134-370 (466)
76 2p1m_B Transport inhibitor res 99.7 2.1E-17 7E-22 171.9 17.0 222 182-446 286-522 (594)
77 3bz5_A Internalin-J, INLJ; leu 99.7 4.2E-18 1.4E-22 171.4 11.2 184 163-416 65-248 (457)
78 1h6u_A Internalin H; cell adhe 99.7 3.6E-18 1.2E-22 163.0 9.7 190 163-415 42-231 (308)
79 2z81_A CD282 antigen, TOLL-lik 99.7 5.9E-18 2E-22 174.4 10.8 206 184-447 309-514 (549)
80 1p9a_G Platelet glycoprotein I 99.7 1.2E-18 4.2E-23 164.7 4.6 204 181-444 6-209 (290)
81 3rfs_A Internalin B, repeat mo 99.7 4E-18 1.4E-22 159.7 7.7 184 211-447 39-222 (272)
82 3j0a_A TOLL-like receptor 5; m 99.7 5.2E-19 1.8E-23 191.6 0.7 90 341-447 266-355 (844)
83 2z81_A CD282 antigen, TOLL-lik 99.7 1.3E-18 4.5E-23 179.3 3.6 237 162-444 26-265 (549)
84 3g06_A SSPH2 (leucine-rich rep 99.7 4.6E-18 1.6E-22 176.7 7.5 209 163-447 82-301 (622)
85 3m19_A Variable lymphocyte rec 99.7 3.8E-18 1.3E-22 157.9 6.1 205 186-444 15-222 (251)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.7E-18 2.3E-22 174.7 7.3 181 213-447 331-514 (562)
87 3bz5_A Internalin-J, INLJ; leu 99.7 1.3E-17 4.3E-22 167.9 8.3 177 148-383 64-247 (457)
88 3j0a_A TOLL-like receptor 5; m 99.7 7.3E-19 2.5E-23 190.4 -0.8 63 163-228 98-163 (844)
89 3m19_A Variable lymphocyte rec 99.7 5.8E-18 2E-22 156.7 5.4 180 213-445 14-194 (251)
90 1io0_A Tropomodulin; LRR prote 99.7 6.2E-16 2.1E-20 136.0 16.7 142 201-386 24-168 (185)
91 1pgv_A TMD-1, tropomodulin TMD 99.7 6.3E-16 2.2E-20 135.3 14.8 134 268-442 32-169 (197)
92 2z63_A TOLL-like receptor 4, v 99.7 2.2E-18 7.6E-23 178.3 -1.8 229 163-447 283-511 (570)
93 1h6t_A Internalin B; cell adhe 99.7 5.8E-17 2E-21 153.3 7.9 171 183-415 44-214 (291)
94 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-17 4.5E-22 174.4 3.1 86 163-260 101-188 (635)
95 2xwt_C Thyrotropin receptor; s 99.7 2.2E-18 7.5E-23 158.2 -2.7 197 185-440 31-236 (239)
96 1h6t_A Internalin B; cell adhe 99.7 7.3E-17 2.5E-21 152.6 6.6 169 213-444 46-214 (291)
97 4ezg_A Putative uncharacterize 99.6 2.9E-16 9.8E-21 139.7 9.3 151 245-444 44-195 (197)
98 3g06_A SSPH2 (leucine-rich rep 99.6 5E-17 1.7E-21 168.8 3.6 197 162-443 61-274 (622)
99 4ezg_A Putative uncharacterize 99.6 1.8E-16 6.3E-21 140.9 5.5 130 244-415 65-195 (197)
100 2xwt_C Thyrotropin receptor; s 99.6 1.6E-17 5.6E-22 152.4 -2.2 184 213-445 31-220 (239)
101 3cvr_A Invasion plasmid antige 99.6 1.7E-16 5.7E-21 163.0 4.4 183 163-420 60-249 (571)
102 1xeu_A Internalin C; cellular 99.6 3.3E-16 1.1E-20 145.8 5.1 148 211-415 39-186 (263)
103 2o6s_A Variable lymphocyte rec 99.6 1.5E-16 5E-21 142.8 2.3 156 245-448 28-183 (208)
104 1jl5_A Outer protein YOPM; leu 99.6 7.2E-16 2.5E-20 155.0 7.4 54 164-226 155-208 (454)
105 1m9s_A Internalin B; cell inva 99.6 6.4E-16 2.2E-20 160.3 6.9 171 183-415 41-211 (605)
106 1m9s_A Internalin B; cell inva 99.6 5.7E-16 1.9E-20 160.6 6.0 172 211-445 41-212 (605)
107 1jl5_A Outer protein YOPM; leu 99.6 6.9E-16 2.4E-20 155.1 5.7 200 163-444 92-291 (454)
108 3cvr_A Invasion plasmid antige 99.6 8.1E-16 2.8E-20 157.9 4.6 35 344-383 210-244 (571)
109 3e6j_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 136.2 6.8 146 245-427 40-187 (229)
110 2xot_A Amphoterin-induced prot 99.5 9.8E-16 3.3E-20 149.5 2.7 177 188-415 21-203 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.5 5.6E-15 1.9E-19 133.7 7.2 155 215-415 13-167 (220)
112 1pgv_A TMD-1, tropomodulin TMD 99.5 1.3E-13 4.4E-18 120.7 15.3 137 201-413 29-169 (197)
113 1xeu_A Internalin C; cellular 99.5 7E-16 2.4E-20 143.6 1.0 165 165-383 22-186 (263)
114 3e6j_A Variable lymphocyte rec 99.5 3.6E-15 1.2E-19 135.8 5.2 158 245-447 19-176 (229)
115 2ra8_A Uncharacterized protein 99.5 1.1E-13 3.7E-18 134.3 14.0 169 244-441 171-341 (362)
116 1dce_A Protein (RAB geranylger 99.5 2.7E-16 9.1E-21 162.1 -5.2 105 278-415 442-547 (567)
117 2v9t_B SLIT homolog 2 protein 99.5 5.7E-15 2E-19 133.6 4.2 153 216-415 14-166 (220)
118 1dce_A Protein (RAB geranylger 99.5 2E-16 6.9E-21 163.0 -6.4 198 182-447 346-550 (567)
119 2xot_A Amphoterin-induced prot 99.5 1.6E-15 5.4E-20 148.0 0.3 180 164-382 20-202 (361)
120 2v9t_B SLIT homolog 2 protein 99.5 6.4E-15 2.2E-19 133.3 4.2 152 188-382 14-165 (220)
121 2v70_A SLIT-2, SLIT homolog 2 99.5 5.8E-15 2E-19 133.6 3.3 152 188-382 14-166 (220)
122 2o6s_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 126.2 8.6 156 248-447 10-165 (208)
123 4g8a_A TOLL-like receptor 4; l 99.5 2.8E-14 9.7E-19 149.0 6.4 185 186-415 53-238 (635)
124 4b8c_D Glucose-repressible alc 99.4 5.3E-15 1.8E-19 156.9 -0.9 115 270-416 217-331 (727)
125 2ell_A Acidic leucine-rich nuc 99.4 3.2E-14 1.1E-18 122.8 2.9 137 277-444 24-161 (168)
126 2ell_A Acidic leucine-rich nuc 99.4 5.2E-14 1.8E-18 121.5 3.6 137 244-415 23-161 (168)
127 2je0_A Acidic leucine-rich nuc 99.4 9.7E-14 3.3E-18 117.3 4.9 131 277-438 17-148 (149)
128 2je0_A Acidic leucine-rich nuc 99.4 1.9E-13 6.6E-18 115.4 6.1 134 244-410 16-149 (149)
129 4ay9_X Follicle-stimulating ho 99.4 3.3E-15 1.1E-19 145.1 -6.5 181 163-383 31-216 (350)
130 1w8a_A SLIT protein; signaling 99.4 1.2E-13 4.2E-18 122.0 3.3 132 247-416 10-141 (192)
131 2ra8_A Uncharacterized protein 99.4 3.8E-13 1.3E-17 130.4 6.9 196 180-412 134-341 (362)
132 4b8c_D Glucose-repressible alc 99.3 2.5E-14 8.7E-19 151.7 -3.5 108 244-383 223-330 (727)
133 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-13 7.1E-18 118.7 2.7 134 244-415 18-154 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.3 5.3E-13 1.8E-17 116.1 3.7 36 246-291 43-78 (176)
135 1w8a_A SLIT protein; signaling 99.3 7.1E-13 2.4E-17 117.1 4.4 131 215-383 10-140 (192)
136 1ds9_A Outer arm dynein; leuci 99.3 3.8E-14 1.3E-18 125.9 -4.3 142 269-445 40-187 (198)
137 2wfh_A SLIT homolog 2 protein 99.3 6.6E-13 2.2E-17 117.4 3.4 141 247-427 12-153 (193)
138 2o6r_A Variable lymphocyte rec 99.3 1.2E-12 4E-17 114.0 4.8 143 246-427 8-152 (177)
139 4ay9_X Follicle-stimulating ho 99.3 3.7E-14 1.3E-18 137.6 -6.4 215 168-440 15-233 (350)
140 2wfh_A SLIT homolog 2 protein 99.2 1.2E-11 3.9E-16 109.3 8.1 126 216-382 13-139 (193)
141 2o6r_A Variable lymphocyte rec 99.2 1.7E-11 5.7E-16 106.6 8.3 129 215-383 9-138 (177)
142 1ds9_A Outer arm dynein; leuci 99.2 1.7E-13 5.8E-18 121.7 -7.6 139 272-447 13-157 (198)
143 3sb4_A Hypothetical leucine ri 99.2 3.3E-12 1.1E-16 122.7 0.8 104 304-437 224-328 (329)
144 3e4g_A ATP synthase subunit S, 99.1 4.4E-11 1.5E-15 102.6 6.2 103 306-427 61-168 (176)
145 3g39_A Variable lymphocyte rec 99.1 4.6E-11 1.6E-15 103.2 5.5 118 278-427 10-130 (170)
146 3g39_A Variable lymphocyte rec 99.1 2.9E-11 1E-15 104.4 3.5 109 307-446 10-118 (170)
147 2r9u_A Variable lymphocyte rec 99.1 6E-11 2E-15 102.9 3.5 118 278-427 13-133 (174)
148 2r9u_A Variable lymphocyte rec 99.0 1.3E-10 4.4E-15 100.7 4.9 105 247-383 14-119 (174)
149 3sb4_A Hypothetical leucine ri 98.9 1.4E-10 4.7E-15 111.3 -0.5 182 184-408 100-328 (329)
150 3e4g_A ATP synthase subunit S, 98.8 3.4E-09 1.2E-13 90.8 5.1 40 342-385 115-156 (176)
151 2ifg_A High affinity nerve gro 98.7 5.8E-09 2E-13 100.6 3.5 116 280-426 11-129 (347)
152 2ifg_A High affinity nerve gro 98.7 1.3E-08 4.5E-13 98.1 5.4 105 248-383 11-117 (347)
153 4fdw_A Leucine rich hypothetic 98.6 6.7E-09 2.3E-13 102.2 1.4 223 163-444 136-359 (401)
154 4fdw_A Leucine rich hypothetic 98.4 1.6E-08 5.6E-13 99.4 -1.5 224 163-442 158-382 (401)
155 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.9E-11 80.8 5.3 84 282-382 148-233 (267)
156 3rw6_A Nuclear RNA export fact 98.1 8.3E-06 2.8E-10 74.9 9.1 86 274-375 167-257 (267)
157 4fs7_A Uncharacterized protein 96.0 0.00031 1.1E-08 68.5 -4.1 83 338-440 294-376 (394)
158 4fs7_A Uncharacterized protein 95.8 0.0034 1.2E-07 61.1 2.5 105 273-411 272-376 (394)
159 1fs1_A SKP2 F-BOX, cyclin A/CD 95.8 0.005 1.7E-07 40.9 2.5 40 16-80 5-44 (53)
160 4gt6_A Cell surface protein; l 95.4 0.015 5E-07 56.5 5.3 133 271-443 259-391 (394)
161 3rfe_A Platelet glycoprotein I 95.4 0.0069 2.3E-07 48.9 2.4 36 341-381 31-67 (130)
162 4gt6_A Cell surface protein; l 95.3 0.033 1.1E-06 54.0 7.6 107 303-441 262-368 (394)
163 3rfe_A Platelet glycoprotein I 95.3 0.0056 1.9E-07 49.4 1.6 69 344-427 11-82 (130)
164 4h09_A Hypothetical leucine ri 92.5 0.087 3E-06 50.5 4.2 61 337-410 282-342 (379)
165 4h09_A Hypothetical leucine ri 91.5 0.059 2E-06 51.7 1.6 130 210-379 214-343 (379)
166 2e31_A FBS1, F-box only protei 90.6 0.15 5.1E-06 47.0 3.3 24 17-40 48-71 (297)
167 3l2o_B F-box only protein 4; s 87.0 0.25 8.6E-06 45.2 2.1 26 19-44 4-29 (312)
168 3v7d_B Cell division control p 85.8 0.3 1E-05 47.7 2.1 27 18-44 13-39 (464)
169 2ovr_B FBW7, F-BOX/WD repeat p 74.9 1.6 5.5E-05 42.2 3.1 27 18-44 17-43 (445)
170 1p22_A F-BOX/WD-repeat protein 73.9 0.96 3.3E-05 43.8 1.2 26 19-44 10-39 (435)
171 4hfx_A Transcription elongatio 23.7 85 0.0029 23.2 3.8 60 23-100 13-72 (97)
172 2lz0_A Uncharacterized protein 21.5 65 0.0022 23.8 3.0 38 335-379 14-53 (100)
No 1
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.95 E-value=1.1e-26 Score=227.30 Aligned_cols=266 Identities=17% Similarity=0.136 Sum_probs=216.1
Q ss_pred chhhcccccCcchhhh-----HhhhcCC-CccEEEeecccChHHHHHHHHHHHhc-CCCccEEEccCCCCChhHHHHHHH
Q 013056 163 YARCLRLQNALCVEET-----CQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQN-SETLASLEFLHCKLSPSFVEGICR 235 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~-----~~l~~~~-~L~~L~Ls~n~~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~l~~~~~~~l~~ 235 (450)
.++.+++++|.+.... ..+.+++ +|++|+|++|.+.......+...+.. .++|++|+|++|.+++.++..++.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 3566677777666544 4555777 99999999999766533333333344 389999999999999999998888
Q ss_pred HHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc
Q 013056 236 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 314 (450)
Q Consensus 236 ~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls 314 (450)
.+... .++|++|++++|.+++.+.. .+...+..+ ++|++|+|++|.+++.++..++.++....++|++|+|+
T Consensus 103 ~l~~~---~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 103 TLAAI---PFTITVLDLGWNDFSSKSSS----EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHTS---CTTCCEEECCSSCGGGSCHH----HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHhC---CCCccEEECcCCcCCcHHHH----HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 77763 37899999999999886554 667777774 69999999999999999999988876654599999999
Q ss_pred CCCCCCcccccCcccHHHhhhCCCCC-CceeEEEccCCCCChhhHHHHHHHhhcC-CCCCEEecCCCCCChhhHHHHHHH
Q 013056 315 GNSIGGWLSKYDRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHI-PNLEILDISDNTIEDDGIRSLIPY 392 (450)
Q Consensus 315 ~n~l~~~~~~~~~~~l~~~l~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~N~l~~~g~~~l~~~ 392 (450)
+|.+++. +...+...+. .+ ++|++|+|++|.|++.|+..++..+... ++|++|+|++|.|++.|+..+.
T Consensus 176 ~n~l~~~----~~~~l~~~l~---~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-- 246 (362)
T 3goz_A 176 GNNLASK----NCAELAKFLA---SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-- 246 (362)
T ss_dssp TSCGGGS----CHHHHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH--
T ss_pred CCCCchh----hHHHHHHHHH---hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH--
Confidence 9999853 3334455555 34 5899999999999999999999999884 5999999999999999988876
Q ss_pred HHhhcCCCCCcCEEEccCCC---CChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 393 FVQASERCNPLVELYLENCE---LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 393 l~~~l~~~~~L~~L~L~~n~---l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
..+..+++|++|+|++|. ++..++..++..+.. .++|++||+++|+|++..+
T Consensus 247 --~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 247 --LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp --HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGC
T ss_pred --HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcch
Confidence 457888999999999998 888888888888888 4559999999999998744
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.94 E-value=7.8e-26 Score=223.27 Aligned_cols=266 Identities=17% Similarity=0.146 Sum_probs=207.6
Q ss_pred chhhcccccCcchhh-----hHhhhcCCCccEEEeecccCh-------HHHHHHHHHHHhcCCCccEEEccCCCCChhHH
Q 013056 163 YARCLRLQNALCVEE-----TCQLLRESKLQSLVLRWIRFE-------EHVQALCKLLIQNSETLASLEFLHCKLSPSFV 230 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-----~~~l~~~~~L~~L~Ls~n~~~-------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 230 (450)
.++.+++++|.+... ...+..+++|++|+|++|.+. ..+..+. ..+..+++|++|+|++|.|++.+.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL-QALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH-HHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH-HHHhhCCcccEEECCCCcCCHHHH
Confidence 456677777776553 233557899999999997432 2233332 334578999999999999999877
Q ss_pred HHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCC---------CCCCEEecCCCCCChhHHHHHHHHH
Q 013056 231 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSL 301 (450)
Q Consensus 231 ~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~l~~~~~~~l~~~L 301 (450)
..+...+.. +++|++|+|++|.++..+. ..++..+..+ ++|++|+|++|.+++.+...++..+
T Consensus 112 ~~l~~~l~~----~~~L~~L~L~~n~l~~~~~----~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 112 EPLIDFLSK----HTPLEHLYLHNNGLGPQAG----AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp HHHHHHHHH----CTTCCEEECCSSCCHHHHH----HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred HHHHHHHHh----CCCCCEEECcCCCCCHHHH----HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 777766665 6999999999999976222 2455556556 9999999999999977888777765
Q ss_pred hhCCCCCcEEeccCCCCCCcccccCcccHHH-hhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC
Q 013056 302 LEASSSLSILDLSGNSIGGWLSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 380 (450)
Q Consensus 302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 380 (450)
.. +++|++|++++|.+++. +...+.. .+. .+++|+.|+|++|.|++.|+..++..+..+++|++|+|++|.
T Consensus 184 ~~-~~~L~~L~L~~n~l~~~----g~~~l~~~~l~---~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 184 QS-HRLLHTVKMVQNGIRPE----GIEHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HH-CTTCCEEECCSSCCCHH----HHHHHHHTTGG---GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Hh-CCCcCEEECcCCCCCHh----HHHHHHHHHhh---cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 44 68999999999999841 1111222 343 678999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 381 IEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 381 l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
|++.|+..+.+.+ ....+++|++|+|++|.|+..|+..++..+....++|++|++++|+|++.++
T Consensus 256 i~~~~~~~l~~~l--~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 256 LSARGAAAVVDAF--SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCHHHHHHHHHHH--HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CchhhHHHHHHHH--hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999988887532 1144799999999999999999999999884312459999999999998764
No 3
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=7.2e-26 Score=228.61 Aligned_cols=263 Identities=21% Similarity=0.235 Sum_probs=180.7
Q ss_pred chhhcccccCcch-----hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCC----CccEEEccCCCCChhHHHHH
Q 013056 163 YARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSE----TLASLEFLHCKLSPSFVEGI 233 (450)
Q Consensus 163 ~l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~----~L~~L~Ls~n~l~~~~~~~l 233 (450)
.++.+++++|.+. .++..+..+++|++|++++|.+...... .+...++ +|++|++++|.|++.+...+
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH---CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH---HHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH---HHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3455566666554 2344555677788888877775543221 1123333 67788888887777776666
Q ss_pred HHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhc-CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEe
Q 013056 234 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD 312 (450)
Q Consensus 234 ~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~ 312 (450)
...+.. +++|++|++++|.+++.+. ..+...+. ..++|++|++++|.+++.++..+...+.. +++|++|+
T Consensus 106 ~~~l~~----~~~L~~L~Ls~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~ 176 (461)
T 1z7x_W 106 SSTLRT----LPTLQELHLSDNLLGDAGL----QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKELT 176 (461)
T ss_dssp HHHTTS----CTTCCEEECCSSBCHHHHH----HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CTTCCEEE
T ss_pred HHHHcc----CCceeEEECCCCcCchHHH----HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh-CCCCCEEE
Confidence 666655 4678888888777765221 13333322 35678888888888777776666665443 57888888
Q ss_pred ccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHH
Q 013056 313 LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPY 392 (450)
Q Consensus 313 Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~ 392 (450)
+++|.+++. +...++..+.. ..++|+.|++++|.+++.++..++..+..+++|++|++++|.+++.|+..+.+.
T Consensus 177 L~~n~i~~~----~~~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 177 VSNNDINEA----GVRVLCQGLKD--SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp CCSSBCHHH----HHHHHHHHHHH--SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcCCCcchH----HHHHHHHHHhc--CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 888877642 11222233321 235888999999999988888889888999999999999999999888888763
Q ss_pred HHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 393 FVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 393 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
.+..+++|++|++++|.++..|+..++..+.. .++|++|++++|.|++.++
T Consensus 251 ---~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 251 ---LLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGA 301 (461)
T ss_dssp ---HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHH
T ss_pred ---HhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHH
Confidence 34457888999999999988888888888877 3458888888888876543
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.94 E-value=1.2e-25 Score=221.93 Aligned_cols=232 Identities=22% Similarity=0.214 Sum_probs=118.0
Q ss_pred hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc-----cCCCCeeEEEcCCCC
Q 013056 182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR-----KRIHKIENLSIDISS 256 (450)
Q Consensus 182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-----~~~~~L~~L~L~~n~ 256 (450)
..+++|++|+|++|.+.......+...+.++++|+.|+|++|.|++.++..+...+.... ...++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455666666666665443211122222345556666666666665555555554433210 000456666666666
Q ss_pred CCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhC
Q 013056 257 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 336 (450)
Q Consensus 257 i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~ 336 (450)
++..+.. .++..+..+++|++|+|++|.+++.+...++...+..+++|++|+|++|.+++ .+...++..+.
T Consensus 171 l~~~~~~----~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~- 241 (386)
T 2ca6_A 171 LENGSMK----EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALK- 241 (386)
T ss_dssp CTGGGHH----HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGG-
T ss_pred CCcHHHH----HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----HHHHHHHHHHc-
Confidence 5532211 33345555566666666666665555554444222335566666666665542 11222334444
Q ss_pred CCCCCceeEEEccCCCCChhhHHHHHHHhhc--CCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCC
Q 013056 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVH--IPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELS 414 (450)
Q Consensus 337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~ 414 (450)
.+++|+.|+|++|.|++.|+..++..+.. +++|++|+|++|.|++.|+..+...+ ...+++|++|++++|.++
T Consensus 242 --~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l---~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 242 --SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp --GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH---HHHCTTCCEEECTTSBSC
T ss_pred --cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH---HhcCCCceEEEccCCcCC
Confidence 33556666666666666555555555533 56666666666666665555554321 133456666666666666
Q ss_pred hhH--HHHHHHHHhc
Q 013056 415 GRG--VSQLLDTLST 427 (450)
Q Consensus 415 ~~g--~~~l~~~l~~ 427 (450)
..+ +..+...+..
T Consensus 317 ~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 317 EEDDVVDEIREVFST 331 (386)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhhh
Confidence 555 3455555544
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=8.1e-26 Score=228.23 Aligned_cols=265 Identities=24% Similarity=0.256 Sum_probs=183.0
Q ss_pred hhhcccccCcch-----hhhHhhhcCCCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 013056 164 ARCLRLQNALCV-----EETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 237 (450)
Q Consensus 164 l~~l~L~~~~~~-----~~~~~l~~~~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 237 (450)
++.+++++|.+. .++..+..+++|++|++++|.+... ...+...+....++|++|++++|.+++.++..+...+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 556667776665 2345555677777777777775443 3333334444456677777777777777766666655
Q ss_pred hccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhc-CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC
Q 013056 238 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 316 (450)
Q Consensus 238 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 316 (450)
.. +++|++|++++|.+++.+.. .+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|
T Consensus 167 ~~----~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 167 RA----KPDFKELTVSNNDINEAGVR----VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSN 237 (461)
T ss_dssp HH----CTTCCEEECCSSBCHHHHHH----HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSS
T ss_pred hh----CCCCCEEECcCCCcchHHHH----HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCC
Confidence 55 46777777777776652211 2333332 3557777777777777766665655543 3577888888877
Q ss_pred CCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhh
Q 013056 317 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396 (450)
Q Consensus 317 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 396 (450)
.+++. +...++..+. ..+++|++|++++|.+++.|+..++..+..+++|++|++++|.+++.|+..+...+
T Consensus 238 ~l~~~----~~~~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--- 308 (461)
T 1z7x_W 238 KLGDV----GMAELCPGLL--HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL--- 308 (461)
T ss_dssp BCHHH----HHHHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH---
T ss_pred cCChH----HHHHHHHHHh--cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh---
Confidence 76641 1122223322 14578999999999999988888888888899999999999999888888776522
Q ss_pred cCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 397 l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
....++|++|++++|.+++.++..++..+.. .++|++|++++|.|++.++
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHH
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccH
Confidence 3344689999999999999988888888888 4559999999999987654
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.94 E-value=7.1e-26 Score=221.66 Aligned_cols=258 Identities=19% Similarity=0.161 Sum_probs=211.0
Q ss_pred ccccCcchhhhHhhhcC-CCccEEEeecccChHHHHHHHHHHHhcCC-CccEEEccCCCCChhHHHHHHHHHhccccCCC
Q 013056 168 RLQNALCVEETCQLLRE-SKLQSLVLRWIRFEEHVQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 245 (450)
Q Consensus 168 ~L~~~~~~~~~~~l~~~-~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~ 245 (450)
+++.+.+...+..+... ++|++|+|++|.+.......+...+.+++ +|++|+|++|.|++.++..++..+... .+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~~ 80 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI---PA 80 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---CT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc---CC
Confidence 45666666656666644 56999999999976654433444456777 899999999999999999998877764 48
Q ss_pred CeeEEEcCCCCCCCCCchhhHHHHHHhhcCC-CCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 246 KIENLSIDISSFIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
+|++|++++|.+++.... .+...+..+ ++|++|+|++|.+++.++..++..+....++|++|+|++|.+++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~---- 152 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSD----ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI---- 152 (362)
T ss_dssp TCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG----
T ss_pred CccEEECcCCcCChHHHH----HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH----
Confidence 999999999999885544 677777787 89999999999999999988888765534799999999999984
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCC-CCCEEecCCCCCChhhHHHHHHHHHhhcCC-CCC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASER-CNP 402 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~-~~~ 402 (450)
.+...++..+.... ++|++|+|++|+|++.+...+...+..++ +|++|||++|.|++.|+..+... +.. .++
T Consensus 153 ~~~~~l~~~l~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~----l~~~~~~ 226 (362)
T 3goz_A 153 KSSDELIQILAAIP--ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI----FSSIPNH 226 (362)
T ss_dssp SCHHHHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----HHHSCTT
T ss_pred HHHHHHHHHHhcCC--ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH----HhcCCCC
Confidence 44455667776431 48999999999999999999999999985 99999999999999999888754 333 369
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~ 443 (450)
|++|+|++|.|++.|+..+...+.. .++|++|++++|.++
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~-l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDS-LKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTT-TTTCSEEEEEHHHHT
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhc-CCCccEEEeccCCcc
Confidence 9999999999999999988877777 455999999999843
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=3.8e-24 Score=206.92 Aligned_cols=232 Identities=17% Similarity=0.199 Sum_probs=176.0
Q ss_pred hhhcccccCcchhhhHhhhcCCCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
++.+++.++.+...+..++++++|++|++++|.+... +.. .+..+++|++|++++|.+++..+..+..
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~------- 140 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAK------- 140 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTT-------
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhc-------
Confidence 3344455555555455566789999999999985443 333 3678999999999999999888777654
Q ss_pred CCCCeeEEEcCCC-CCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCC-CCcEEeccCC--C
Q 013056 243 RIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--S 317 (450)
Q Consensus 243 ~~~~L~~L~L~~n-~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n--~ 317 (450)
+++|++|++++| .+++ ..++..+..+++|++|++++| .+++.+...+.. .++ +|++|++++| .
T Consensus 141 -~~~L~~L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 141 -NSNLVRLNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKN 208 (336)
T ss_dssp -CTTCSEEECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGG
T ss_pred -CCCCCEEECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCccc
Confidence 699999999999 6765 136777888999999999999 998865444433 368 9999999999 4
Q ss_pred CCCcccccCcccHHHhhhCCCCCCceeEEEccCCC-CChhhHHHHHHHhhcCCCCCEEecCCC-CCChhhHHHHHHHHHh
Q 013056 318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDN-TIEDDGIRSLIPYFVQ 395 (450)
Q Consensus 318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g~~~l~~~l~~ 395 (450)
+++ ..++..+. .+++|+.|++++|. +++. .+..+..+++|++|++++| .+++.++.
T Consensus 209 ~~~-------~~l~~~~~---~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------- 266 (336)
T 2ast_B 209 LQK-------SDLSTLVR---RCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCYDIIPETLL-------- 266 (336)
T ss_dssp SCH-------HHHHHHHH---HCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCCGGGGG--------
T ss_pred CCH-------HHHHHHHh---hCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCCHHHHH--------
Confidence 552 12445555 56899999999998 7774 3456788999999999999 67765432
Q ss_pred hcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 396 ASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 396 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
.+..+++|++|++++| +++.++..+... ++.|++++|.+++..|.
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCTTCS
T ss_pred HHhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccccCC
Confidence 3556799999999999 888877666533 55567899999987764
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.6e-24 Score=232.51 Aligned_cols=244 Identities=22% Similarity=0.231 Sum_probs=163.0
Q ss_pred hhcccccCcch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccC
Q 013056 165 RCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243 (450)
Q Consensus 165 ~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~ 243 (450)
+.+++++|.+. .++..+.++++|+.|++++|.+...++.. +..+++|+.|++++|.+++..+..+..
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~-------- 488 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----LMYVKTLETLILDFNDLTGEIPSGLSN-------- 488 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGG--------
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCceEEEecCCcccCcCCHHHhc--------
Confidence 33444444443 23333444555555555555533222211 345556666666666655443333322
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+++|++|++++|++++ .++..++.+++|++|+|++|++++..+..+ ..+++|++|++++|.+.+..|
T Consensus 489 l~~L~~L~L~~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTG--------EIPKWIGRLENLAILKLSNNSFSGNIPAEL-----GDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GGCTTCCEEECCSSEEESBCC
T ss_pred CCCCCEEEccCCccCC--------cCChHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCCCEEECCCCccCCcCC
Confidence 5667777777777765 455566677777778887777776665544 346788888888887765544
Q ss_pred ccCcccH--------------------------------------HHhh---------------------hCCCCCCcee
Q 013056 324 KYDRSGP--------------------------------------LFSL---------------------GAGKSLQSLR 344 (450)
Q Consensus 324 ~~~~~~l--------------------------------------~~~l---------------------~~~~~l~~L~ 344 (450)
....... +..+ ..+..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 2111000 0000 0123457899
Q ss_pred EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH
Q 013056 345 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 424 (450)
Q Consensus 345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 424 (450)
.|+|++|+++. .+|..++.+++|+.|+|++|+++.. +| ..++.+++|+.|||++|+++.. ++..
T Consensus 636 ~LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~-----ip---~~l~~L~~L~~LdLs~N~l~g~----ip~~ 699 (768)
T 3rgz_A 636 FLDMSYNMLSG----YIPKEIGSMPYLFILNLGHNDISGS-----IP---DEVGDLRGLNILDLSSNKLDGR----IPQA 699 (768)
T ss_dssp EEECCSSCCBS----CCCGGGGGCTTCCEEECCSSCCCSC-----CC---GGGGGCTTCCEEECCSSCCEEC----CCGG
T ss_pred EEECcCCcccc----cCCHHHhccccCCEEeCcCCccCCC-----CC---hHHhCCCCCCEEECCCCcccCc----CChH
Confidence 99999999987 5899999999999999999999864 66 7788899999999999999976 7888
Q ss_pred HhcCCCCCcEEECcCCCCCcccccCC
Q 013056 425 LSTLRRPPTSLSIADNNLGRFCANSG 450 (450)
Q Consensus 425 l~~l~~~L~~L~L~~N~l~~~~~~~~ 450 (450)
+..+.. |++|++++|++++.+|..|
T Consensus 700 l~~l~~-L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 700 MSALTM-LTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGCCC-CSEEECCSSEEEEECCSSS
T ss_pred HhCCCC-CCEEECcCCcccccCCCch
Confidence 888654 9999999999999999764
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=197.20 Aligned_cols=135 Identities=23% Similarity=0.171 Sum_probs=68.7
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
+|++|+|++|.+++.++..++..+....++|++|+|++|.+++ .++..++..+. .+++|++|+|++|.|++.|
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~---~~~~L~~L~Ls~N~l~~~g 199 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA----AGVAVLMEGLA---GNTSVTHLSLLHTGLGDEG 199 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH----HHHHHHHHHHH---TCSSCCEEECTTSSCHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh----HHHHHHHHHHh---cCCCcCEEeCCCCCCCcHH
Confidence 4455555555555555555555444444555555555555542 22223333333 2344555555555555555
Q ss_pred HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHH
Q 013056 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 423 (450)
Q Consensus 358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~ 423 (450)
+..++.++..+++|++|+|++|.|++.|+..++. .+..+++|++|+|++|.|++.|+..+.+
T Consensus 200 ~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~----~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALAR----AAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH----HHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH----HHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 5555555555555555555555555555555542 2333455555555555555555555444
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=9.2e-25 Score=209.35 Aligned_cols=232 Identities=18% Similarity=0.163 Sum_probs=168.4
Q ss_pred chhhcccccCcch---hhhHhhhcCCCccEEEeec-ccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHh
Q 013056 163 YARCLRLQNALCV---EETCQLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 238 (450)
Q Consensus 163 ~l~~l~L~~~~~~---~~~~~l~~~~~L~~L~Ls~-n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 238 (450)
.++.++++++.+. .++..+.++++|++|++++ |.+...++.. +.++++|++|++++|.++...+..+..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~--- 123 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQ--- 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGG---
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhC---
Confidence 4555666666665 3566777888889999884 6644333222 567888899999888887555544433
Q ss_pred ccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCC-CCcEEeccCCC
Q 013056 239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNS 317 (450)
Q Consensus 239 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~ 317 (450)
+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|.
T Consensus 124 -----l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 124 -----IKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNR 185 (313)
T ss_dssp -----CTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSE
T ss_pred -----CCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCe
Confidence 6888889998888876 455667788889999998888876566554 3355 88889998888
Q ss_pred CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhc
Q 013056 318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 397 (450)
Q Consensus 318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l 397 (450)
+++..+ ..+.. +. |+.|++++|.++. .++..+..+++|+.|+|++|.++.. . ..+
T Consensus 186 l~~~~~--------~~~~~---l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~----~~~ 240 (313)
T 1ogq_A 186 LTGKIP--------PTFAN---LN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD-----L----GKV 240 (313)
T ss_dssp EEEECC--------GGGGG---CC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB-----G----GGC
T ss_pred eeccCC--------hHHhC---Cc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee-----c----Ccc
Confidence 876544 55553 34 8888888888876 3566778888888888888888753 3 236
Q ss_pred CCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccccC
Q 013056 398 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCANS 449 (450)
Q Consensus 398 ~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~~ 449 (450)
..+++|++|+|++|.|+.. ++..+..+. +|++|++++|+|++.+|..
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGT----LPQGLTQLK-FLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCCTTCCEEECCSSCCEEC----CCGGGGGCT-TCCEEECCSSEEEEECCCS
T ss_pred cccCCCCEEECcCCcccCc----CChHHhcCc-CCCEEECcCCcccccCCCC
Confidence 6778888888888888754 566677744 4888888888888777753
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=8.4e-23 Score=205.78 Aligned_cols=248 Identities=18% Similarity=0.144 Sum_probs=137.8
Q ss_pred chhhcccccCcchhh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+++++|.+..+ +..+.++++|++|++++|.+...... ...+.++++|++|++++|.++...+..+...
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----- 152 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLN----- 152 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCCGGGGG-----
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcccccCC-----
Confidence 455666666666554 34455667777777777765432211 1113456677777777776665433221111
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhh--------------------------HHHHHHhhcCCCCCCEEecCCCCCChhHHH
Q 013056 242 KRIHKIENLSIDISSFIENCPSSV--------------------------VVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~--------------------------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 295 (450)
+++|++|++++|.++......+ .......+..+++|++|++++|.+++..+.
T Consensus 153 --l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 153 --MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp --CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred --CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 4666666666666555322211 111111223446778888888877776666
Q ss_pred HHHHHH----------------------------------------------------------hhCCCCCcEEeccCCC
Q 013056 296 MVFSSL----------------------------------------------------------LEASSSLSILDLSGNS 317 (450)
Q Consensus 296 ~l~~~L----------------------------------------------------------~~~~~~L~~L~Ls~n~ 317 (450)
.+...+ +..+++|++|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 665431 1223444444444444
Q ss_pred CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhc
Q 013056 318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 397 (450)
Q Consensus 318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l 397 (450)
+++..+ .. +..+++|++|+|++|.++. ..+..+..+++|++|+|++|++++. .| ..+
T Consensus 311 l~~~~~--------~~---~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~ 367 (455)
T 3v47_A 311 INKIDD--------NA---FWGLTHLLKLNLSQNFLGS----IDSRMFENLDKLEVLDLSYNHIRAL-----GD---QSF 367 (455)
T ss_dssp CCEECT--------TT---TTTCTTCCEEECCSSCCCE----ECGGGGTTCTTCCEEECCSSCCCEE-----CT---TTT
T ss_pred ccccCh--------hH---hcCcccCCEEECCCCccCC----cChhHhcCcccCCEEECCCCccccc-----Ch---hhc
Confidence 443222 22 2245667777777776665 2345566677777777777777652 22 456
Q ss_pred CCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 398 ERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 398 ~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
..+++|++|+|++|+|+.. .+..+..+ ++|++|++++|++++..|
T Consensus 368 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSV----PDGIFDRL-TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSSCBCCCTT
T ss_pred cccccccEEECCCCccccC----CHhHhccC-CcccEEEccCCCcccCCC
Confidence 6677777777777777763 12233443 337777777777777665
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=187.08 Aligned_cols=209 Identities=19% Similarity=0.216 Sum_probs=155.5
Q ss_pred CCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056 185 SKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 263 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~ 263 (450)
++|+.|+|++|.+... +..+...+....++|++|+|++|.|++.++..++..+ .+|++|+|++|.+++.+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-------~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-------LRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-------HTEEEEECCSSCCCHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-------HhccHhhcCCCCCCHHHHH
Confidence 3466777777775544 3333333343446899999999999888888887764 4688999999988773333
Q ss_pred hhHHHHHHhhc-CCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056 264 SVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 342 (450)
Q Consensus 264 ~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 342 (450)
.+...+. .+++|++|+|++|.+++.+...++.++.. +++|++|+|++|.+++ .+...++..+. .+++
T Consensus 145 ----~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~----~g~~~L~~~L~---~~~~ 212 (372)
T 3un9_A 145 ----DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGD----EGLELLAAQLD---RNRQ 212 (372)
T ss_dssp ----HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHH----HHHHHHHHHGG---GCSC
T ss_pred ----HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCc----HHHHHHHHHHh---cCCC
Confidence 4555553 57889999999999998888888887754 5889999999999884 33344556666 4478
Q ss_pred eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC-CCcCEEE--ccCCCCChh
Q 013056 343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC-NPLVELY--LENCELSGR 416 (450)
Q Consensus 343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~-~~L~~L~--L~~n~l~~~ 416 (450)
|++|+|++|.|++.|+..++.++..+++|++|||++|.|++.|+..+.. ..... +.|+.+. +..|.+++.
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~----~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD----LGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH----CC------CEEECCCC----CHHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH----HhcCCCccchhhHhhhcCCccCHH
Confidence 9999999999999999999999999999999999999999999998863 22221 2388888 888888765
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.5e-23 Score=223.19 Aligned_cols=233 Identities=24% Similarity=0.273 Sum_probs=174.8
Q ss_pred chhhcccccCcch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+++.+|.+. .++..+.++++|++|++++|.+....+.. +.++++|+.|++++|.+++..+..+..
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~~~~------ 464 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMY------ 464 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGG------
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH----HhcCCCCCEEECCCCcccCcCCHHHcC------
Confidence 3566667777665 35556667888888888888755333222 567788888888888887655554443
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+++|++|++++|.+++ .++..+..+++|++|+|++|++++..+..+ ..+++|++|+|++|.+.+.
T Consensus 465 --l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 465 --VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp --CTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCEEE
T ss_pred --CCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEccCCccCCcCChHH-----hcCCCCCEEECCCCcccCc
Confidence 6888888888888887 456667788889999999888887666654 3478899999999988875
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHH-------------------------------------
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA------------------------------------- 364 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~------------------------------------- 364 (450)
.| ..++ .+++|+.|++++|.++. .+|..
T Consensus 530 ~p--------~~l~---~l~~L~~L~Ls~N~l~g----~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 530 IP--------AELG---DCRSLIWLDLNTNLFNG----TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CC--------GGGG---GCTTCCEEECCSSEEES----BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CC--------HHHc---CCCCCCEEECCCCccCC----cCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 55 5555 56889999999987753 13322
Q ss_pred ---------------------------------hhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056 365 ---------------------------------LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411 (450)
Q Consensus 365 ---------------------------------l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 411 (450)
+..+++|+.|||++|+++.. +| ..++.++.|+.|+|++|
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-----ip---~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IP---KEIGSMPYLFILNLGHN 666 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-----CC---GGGGGCTTCCEEECCSS
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-----CC---HHHhccccCCEEeCcCC
Confidence 33456788999999998764 66 67888899999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 412 ELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 412 ~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
.++.. ++..+..+.. |++|||++|++++.+|.
T Consensus 667 ~l~g~----ip~~l~~L~~-L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 667 DISGS----IPDEVGDLRG-LNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCSC----CCGGGGGCTT-CCEEECCSSCCEECCCG
T ss_pred ccCCC----CChHHhCCCC-CCEEECCCCcccCcCCh
Confidence 99875 7888888644 99999999999988875
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=8.7e-22 Score=198.37 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=66.2
Q ss_pred chhhcccccCcch-hh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHH--HHHHHh
Q 013056 163 YARCLRLQNALCV-EE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEG--ICRSLC 238 (450)
Q Consensus 163 ~l~~l~L~~~~~~-~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~L~ 238 (450)
.++.++++++... .+ +..+.++++|++|++++|.+....+.. +.++++|++|++++|.+++..+.. +..
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--- 127 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----FNGLANLEVLTLTQCNLDGAVLSGNFFKP--- 127 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT----TTTCTTCCEEECTTSCCBTHHHHSSTTTT---
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh----ccCcccCCEEeCCCCCCCccccCcccccC---
Confidence 4455666666553 22 233446677777777777644332221 456677777777777776544332 221
Q ss_pred ccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHH
Q 013056 239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 297 (450)
Q Consensus 239 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 297 (450)
+++|++|++++|.++..... ..+..+++|++|++++|.+++..+..+
T Consensus 128 -----l~~L~~L~L~~n~l~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 128 -----LTSLEMLVLRDNNIKKIQPA-------SFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp -----CTTCCEEECCSSBCCSCCCC-------GGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred -----cccCCEEECCCCccCccCcc-------cccCCCCcccEEeCCCCcccccChhhh
Confidence 56677777777777662111 125566777777777777666444433
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=4.9e-22 Score=187.70 Aligned_cols=206 Identities=20% Similarity=0.198 Sum_probs=112.8
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCC-CCCCCch
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS 263 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-i~~~~~~ 263 (450)
++|++|++++|.+....... +..+++|++|++++|.++...+..+.. +++|++|++++|. +..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~~l~~---- 95 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTG--------LALLEQLDLSDNAQLRS---- 95 (285)
T ss_dssp TTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSCTTCCC----
T ss_pred CCceEEEeeCCcCCccCHHH----cccCCCCCEEECCCCccceeCHhhcCC--------ccCCCEEeCCCCCCccc----
Confidence 45666666666644332211 345566666666666665443333322 4666666666665 444
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056 264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 343 (450)
Q Consensus 264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 343 (450)
..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+..+++|
T Consensus 96 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L 155 (285)
T 1ozn_A 96 ----VDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQDNALQALPD-----------DTFRDLGNL 155 (285)
T ss_dssp ----CCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTC
T ss_pred ----cCHHHhcCCcCCCEEECCCCcCCEECHhHh-----hCCcCCCEEECCCCcccccCH-----------hHhccCCCc
Confidence 123344556666666666666655333222 335666666666666654322 122245666
Q ss_pred eEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHH
Q 013056 344 RLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLL 422 (450)
Q Consensus 344 ~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~ 422 (450)
++|+|++|+++. ++. .+..+++|++|++++|.+++. .| ..+..+++|++|++++|.++.. .+
T Consensus 156 ~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~~L~~L~l~~n~l~~~----~~ 218 (285)
T 1ozn_A 156 THLFLHGNRISS-----VPERAFRGLHSLDRLLLHQNRVAHV-----HP---HAFRDLGRLMTLYLFANNLSAL----PT 218 (285)
T ss_dssp CEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEE-----CT---TTTTTCTTCCEEECCSSCCSCC----CH
T ss_pred cEEECCCCcccc-----cCHHHhcCccccCEEECCCCccccc-----CH---hHccCcccccEeeCCCCcCCcC----CH
Confidence 666666666664 222 355666666666666666552 12 3455566666666666666653 22
Q ss_pred HHHhcCCCCCcEEECcCCCCCc
Q 013056 423 DTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 423 ~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
..+..+ .+|++|++++|++..
T Consensus 219 ~~~~~l-~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 219 EALAPL-RALQYLRLNDNPWVC 239 (285)
T ss_dssp HHHTTC-TTCCEEECCSSCEEC
T ss_pred HHcccC-cccCEEeccCCCccC
Confidence 334443 336666666666654
No 16
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.8e-22 Score=192.00 Aligned_cols=237 Identities=17% Similarity=0.098 Sum_probs=169.8
Q ss_pred hhhcccccCcchh--hhHhh-------hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHH
Q 013056 164 ARCLRLQNALCVE--ETCQL-------LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGIC 234 (450)
Q Consensus 164 l~~l~L~~~~~~~--~~~~l-------~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 234 (450)
++.++++++.+.. ++..+ .++++|++|++++|.+....+..+ ++..+++|++|++++|.+++. +..+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~ 141 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL--LEATGPDLNILNLRNVSWATR-DAWLA 141 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS--SSCCSCCCSEEEEESCBCSSS-SSHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH--HHhcCCCccEEEccCCCCcch-hHHHH
Confidence 5566666665532 22333 268999999999999764332210 026789999999999999876 44444
Q ss_pred HHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc
Q 013056 235 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 314 (450)
Q Consensus 235 ~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls 314 (450)
...... .++|++|++++|.++. ..+..++.+++|++|+|++|++.+.... +....+..+++|++|+++
T Consensus 142 ~l~~~~---~~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 142 ELQQWL---KPGLKVLSIAQAHSLN--------FSCEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALR 209 (312)
T ss_dssp HHHTTC---CTTCCEEEEESCSCCC--------CCTTTCCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECT
T ss_pred HHHHhh---cCCCcEEEeeCCCCcc--------chHHHhccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECC
Confidence 321111 3889999999999988 3446678899999999999998764221 111112568999999999
Q ss_pred CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHH
Q 013056 315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYF 393 (450)
Q Consensus 315 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l 393 (450)
+|.+++... ++..+. ..+++|+.|+|++|.++.. .+ ..+..+++|++|+|++|.|+. +|
T Consensus 210 ~N~l~~~~~------~~~~~~--~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~~------ip-- 269 (312)
T 1wwl_A 210 NAGMETPSG------VCSALA--AARVQLQGLDLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLKQ------VP-- 269 (312)
T ss_dssp TSCCCCHHH------HHHHHH--HTTCCCSEEECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCSS------CC--
T ss_pred CCcCcchHH------HHHHHH--hcCCCCCEEECCCCcCCcc----cchhhhhhcCCCCEEECCCCccCh------hh--
Confidence 999985211 222221 2568999999999999873 22 335567899999999999986 55
Q ss_pred HhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 394 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 394 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
..+. ++|++|+|++|+|+.. +. +..+. +|++|++++|+|++.
T Consensus 270 -~~~~--~~L~~L~Ls~N~l~~~-----p~-~~~l~-~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 270 -KGLP--AKLSVLDLSYNRLDRN-----PS-PDELP-QVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SSCC--SEEEEEECCSSCCCSC-----CC-TTTSC-EEEEEECTTCTTTCC
T ss_pred -hhcc--CCceEEECCCCCCCCC-----hh-HhhCC-CCCEEeccCCCCCCC
Confidence 3444 8999999999999983 33 55643 499999999999875
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=4e-22 Score=190.27 Aligned_cols=232 Identities=20% Similarity=0.203 Sum_probs=176.3
Q ss_pred cchhhcccccCcchhhhHhh-hcCCCccEEEeecccChHH---HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHH
Q 013056 162 HYARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEH---VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 237 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~---~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 237 (450)
..++.++++++.+..++..+ .++++|++|++++|.+... ... +..+++|++|++++|.++...
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~~~L~~L~Ls~n~i~~l~-------- 94 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-----DFGTTSLKYLDLSFNGVITMS-------- 94 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-----HHSCSCCCEEECCSCSEEEEE--------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-----cccccccCEEECCCCccccCh--------
Confidence 35677788888888777765 4889999999999986532 122 346789999999999887421
Q ss_pred hccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC
Q 013056 238 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 317 (450)
Q Consensus 238 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~ 317 (450)
.....+++|++|++++|.++.... ...+..+++|++|++++|.+++..+..+ ..+++|++|++++|.
T Consensus 95 -~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 95 -SNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNS 161 (306)
T ss_dssp -EEEETCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECSTTTT-----TTCTTCCEEECTTCE
T ss_pred -hhcCCCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccchhhc-----ccCcCCCEEECCCCc
Confidence 111126899999999999887321 1356788999999999999877544433 457999999999999
Q ss_pred CCC-cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhh
Q 013056 318 IGG-WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396 (450)
Q Consensus 318 l~~-~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 396 (450)
+.+ ..+ . .+..+++|+.|++++|.++. ..+..+..+++|++|+|++|.+++ ++. ..
T Consensus 162 l~~~~~~--------~---~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~ 218 (306)
T 2z66_A 162 FQENFLP--------D---IFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFS------LDT--FP 218 (306)
T ss_dssp EGGGEEC--------S---CCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCSB------CCS--GG
T ss_pred cccccch--------h---HHhhCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCccCc------cCh--hh
Confidence 875 233 2 33467899999999999987 236678899999999999999987 321 34
Q ss_pred cCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 397 SERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 397 l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
+..+++|++|++++|.++.. .+..+..+..+|++|++++|+++...
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccCcccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccCCCeeccc
Confidence 67789999999999999885 44455665456999999999997653
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=189.29 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=147.7
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++. .+.++++|++|++++|.+....... +.++++|++|++++|.|+......+..
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS----FSSLGSLEHLDLSYNYLSNLSSSWFKP------ 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSSCCHHHHTT------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh----cCCCCCCCEEECCCCcCCcCCHhHhCC------
Confidence 56667777777766665 4557788888888888755432222 456778888888888887654443433
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 320 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 320 (450)
+++|++|++++|.++.... ...+..+++|++|++++| .++...+..+ ..+++|++|++++|.+++
T Consensus 123 --l~~L~~L~L~~n~l~~l~~-------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 123 --LSSLTFLNLLGNPYKTLGE-------TSLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASDLQS 188 (353)
T ss_dssp --CTTCSEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCCE
T ss_pred --CccCCEEECCCCCCcccCc-------hhhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCCcCc
Confidence 5778888888888776221 024567788888888887 4555333322 346788888888888776
Q ss_pred cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHH-hhcCCCCCEEecCCCCCChh---------------
Q 013056 321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEILDISDNTIEDD--------------- 384 (450)
Q Consensus 321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~N~l~~~--------------- 384 (450)
..+ ..+ ..+++|++|++++|.++. ++.. +..+++|++|++++|.+++.
T Consensus 189 ~~~--------~~l---~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 189 YEP--------KSL---KSIQNVSHLILHMKQHIL-----LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp ECT--------TTT---TTCSEEEEEEEECSCSTT-----HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred cCH--------HHH---hccccCCeecCCCCcccc-----chhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 433 333 356778888888888765 4443 33567777777777776652
Q ss_pred ------------hHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH-HhcCCCCCcEEECcCCCCCcccc
Q 013056 385 ------------GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 385 ------------g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
++..+. ..+..+++|++|++++|+|+. ++.. +..+ ++|++|++++|++.+..+
T Consensus 253 ~l~L~~~~l~~~~l~~l~----~~l~~l~~L~~L~Ls~N~l~~-----i~~~~~~~l-~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVM----KLLNQISGLLELEFSRNQLKS-----VPDGIFDRL-TSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEEEESCBCCHHHHHHHH----HHHHTCTTCCEEECCSSCCCC-----CCTTTTTTC-TTCCEEECCSSCBCCCHH
T ss_pred ccccccccccCcchhhhH----HHHhcccCCCEEECCCCCCCc-----cCHHHHhcC-CCCCEEEeeCCCccCcCC
Confidence 222222 334555666666666666664 3333 2342 336666666666665543
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=9.2e-23 Score=196.68 Aligned_cols=225 Identities=19% Similarity=0.190 Sum_probs=168.7
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.+..++++++.+..++..+.++++|++|+|++|.+... +. .+.++++|++|+|++|.++ ..+..+..
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~------- 148 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PD----TMQQFAGLETLTLARNPLR-ALPASIAS------- 148 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CS----CGGGGTTCSEEEEESCCCC-CCCGGGGG-------
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hH----HHhccCCCCEEECCCCccc-cCcHHHhc-------
Confidence 45566777777777777788889999999999986632 22 1467889999999999888 33333322
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhh---------cCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEec
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFL---------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL 313 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l---------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L 313 (450)
+++|++|++++|.+.+ .++..+ ..+++|++|+|++|.++. .+..+ ..+++|++|++
T Consensus 149 -l~~L~~L~L~~n~~~~--------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l-----~~l~~L~~L~L 213 (328)
T 4fcg_A 149 -LNRLRELSIRACPELT--------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASI-----ANLQNLKSLKI 213 (328)
T ss_dssp -CTTCCEEEEEEETTCC--------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGG-----GGCTTCCEEEE
T ss_pred -CcCCCEEECCCCCCcc--------ccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhh-----cCCCCCCEEEc
Confidence 6889999999877665 233333 348899999999998873 55433 44789999999
Q ss_pred cCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHH
Q 013056 314 SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYF 393 (450)
Q Consensus 314 s~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l 393 (450)
++|.+++ +|..+. .+++|+.|+|++|.+.. .+|..+..+++|++|+|++|.+... +|
T Consensus 214 ~~N~l~~---------l~~~l~---~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~-----~p-- 270 (328)
T 4fcg_A 214 RNSPLSA---------LGPAIH---HLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLT-----LP-- 270 (328)
T ss_dssp ESSCCCC---------CCGGGG---GCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCB-----CC--
T ss_pred cCCCCCc---------Cchhhc---cCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhh-----cc--
Confidence 9999886 334455 56889999999988776 4677788899999999999877654 55
Q ss_pred HhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 394 VQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 394 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
..+..+++|++|+|++|.+... +++.+..+.. |+.+++..|.+..
T Consensus 271 -~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L~~-L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 271 -LDIHRLTQLEKLDLRGCVNLSR----LPSLIAQLPA-NCIILVPPHLQAQ 315 (328)
T ss_dssp -TTGGGCTTCCEEECTTCTTCCC----CCGGGGGSCT-TCEEECCGGGSCC
T ss_pred -hhhhcCCCCCEEeCCCCCchhh----ccHHHhhccC-ceEEeCCHHHHHH
Confidence 5577789999999999887765 7888888655 9999988776643
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.3e-21 Score=188.83 Aligned_cols=229 Identities=17% Similarity=0.185 Sum_probs=123.3
Q ss_pred chhhcccccCcchhh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..+ +..+.++++|++|++++|.+...... -.++|++|++++|.++......+..
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~------ 143 (330)
T 1xku_A 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVFNG------ 143 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHHTT------
T ss_pred CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------hcccccEEECCCCcccccCHhHhcC------
Confidence 344555555555544 33444556666666666654322111 1145666666666665444433332
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+++|++|++++|.+...+ ..+..+..+++|++|++++|.++. .+..+ .++|++|++++|.+++.
T Consensus 144 --l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~-------~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 144 --LNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIRIADTNITT-IPQGL-------PPSLTELHLDGNKITKV 207 (330)
T ss_dssp --CTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEECCSSCCCS-CCSSC-------CTTCSEEECTTSCCCEE
T ss_pred --CccccEEECCCCcCCccC------cChhhccCCCCcCEEECCCCcccc-CCccc-------cccCCEEECCCCcCCcc
Confidence 456666666666654311 122344556666666666666554 22111 25666666666666643
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
.+ ..+. .+++|+.|+|++|.++.. .+..+..+++|++|+|++|.++. +| ..+..++
T Consensus 208 ~~--------~~~~---~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------lp---~~l~~l~ 263 (330)
T 1xku_A 208 DA--------ASLK---GLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK------VP---GGLADHK 263 (330)
T ss_dssp CT--------GGGT---TCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS------CC---TTTTTCS
T ss_pred CH--------HHhc---CCCCCCEEECCCCcCcee----ChhhccCCCCCCEEECCCCcCcc------CC---hhhccCC
Confidence 22 3333 456777777777777652 23356667777777777777764 44 4466667
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHh-cCCCCCcEEECcCCCCCc
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLS-TLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~-~l~~~L~~L~L~~N~l~~ 444 (450)
+|++|++++|.|+..+...+..... ....+|+.|++++|++..
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7777777777776642222110000 002346777777777653
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.1e-22 Score=193.01 Aligned_cols=213 Identities=21% Similarity=0.225 Sum_probs=169.0
Q ss_pred cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056 183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 262 (450)
Q Consensus 183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~ 262 (450)
...+++.|+|++|.+...... +.++++|++|+|++|.|+ ..+..+.. +.+|++|++++|.++.
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-----l~~l~~L~~L~L~~n~l~-~lp~~~~~--------l~~L~~L~Ls~n~l~~--- 141 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-----AFRLSHLQHMTIDAAGLM-ELPDTMQQ--------FAGLETLTLARNPLRA--- 141 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-----GGGGTTCSEEEEESSCCC-CCCSCGGG--------GTTCSEEEEESCCCCC---
T ss_pred cccceeEEEccCCCchhcChh-----hhhCCCCCEEECCCCCcc-chhHHHhc--------cCCCCEEECCCCcccc---
Confidence 358999999999997643332 346899999999999998 33333332 6899999999999986
Q ss_pred hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH----HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCC
Q 013056 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS----SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 338 (450)
Q Consensus 263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~ 338 (450)
++..+..+++|++|++++|++.+..+..+.. .-+..+++|++|++++|.++. +|..++
T Consensus 142 ------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------lp~~l~--- 203 (328)
T 4fcg_A 142 ------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---------LPASIA--- 203 (328)
T ss_dssp ------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---------CCGGGG---
T ss_pred ------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---------chHhhc---
Confidence 4556888999999999998776655543310 001237899999999999984 335566
Q ss_pred CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHH
Q 013056 339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 418 (450)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~ 418 (450)
.+++|++|+|++|.++. ++..+..+++|++|+|++|.+... +| ..+..+++|++|+|++|.+...
T Consensus 204 ~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~-----~p---~~~~~l~~L~~L~L~~n~~~~~-- 268 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN-----YP---PIFGGRAPLKRLILKDCSNLLT-- 268 (328)
T ss_dssp GCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB-----CC---CCTTCCCCCCEEECTTCTTCCB--
T ss_pred CCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh-----hH---HHhcCCCCCCEEECCCCCchhh--
Confidence 56899999999999996 777899999999999999988764 55 5688899999999999987765
Q ss_pred HHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 419 SQLLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 419 ~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
++..+..+. +|++|+|++|++.+.+|.
T Consensus 269 --~p~~~~~l~-~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 269 --LPLDIHRLT-QLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp --CCTTGGGCT-TCCEEECTTCTTCCCCCG
T ss_pred --cchhhhcCC-CCCEEeCCCCCchhhccH
Confidence 666777754 499999999999998885
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=198.05 Aligned_cols=229 Identities=19% Similarity=0.111 Sum_probs=119.5
Q ss_pred chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++... .++++|++|+|++|.+....+.. +.++++|+.|++++|.++...+..+..
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 150 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSG------ 150 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTT------
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccC------
Confidence 3455556665555555443 35566666666666543332211 345566666666666555433322221
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+.+|++|++++|.++. .....+..+++|+.|+|++|.+.+..+.. +..+++|++|++++|...+.
T Consensus 151 --l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 151 --LNSLEQLTLEKCNLTS--------IPTEALSHLHGLIVLRLRHLNINAIRDYS-----FKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp --CTTCCEEEEESCCCSS--------CCHHHHTTCTTCCEEEEESCCCCEECTTC-----SCSCTTCCEEEEECCTTCCE
T ss_pred --CCCCCEEECCCCcCcc--------cChhHhcccCCCcEEeCCCCcCcEeChhh-----cccCcccceeeCCCCccccc
Confidence 4566666666666655 23344555666666666666665532222 23355666666666554432
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH-HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG-SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 400 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 400 (450)
.+ .... ...+|+.|+|++|+++. ++ ..+..+++|+.|+|++|.+++. +. ..+..+
T Consensus 216 ~~--------~~~~---~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~------~~--~~~~~l 271 (477)
T 2id5_A 216 MT--------PNCL---YGLNLTSLSITHCNLTA-----VPYLAVRHLVYLRFLNLSYNPISTI------EG--SMLHEL 271 (477)
T ss_dssp EC--------TTTT---TTCCCSEEEEESSCCCS-----CCHHHHTTCTTCCEEECCSSCCCEE------CT--TSCTTC
T ss_pred cC--------cccc---cCccccEEECcCCcccc-----cCHHHhcCccccCeeECCCCcCCcc------Ch--hhcccc
Confidence 22 1111 12356666666666664 22 3456666777777777766652 11 335555
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 401 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 401 ~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
++|++|+|++|.++.. .+..+..+ .+|++|+|++|.|++.
T Consensus 272 ~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVV----EPYAFRGL-NYLRVLNVSGNQLTTL 311 (477)
T ss_dssp TTCCEEECCSSCCSEE----CTTTBTTC-TTCCEEECCSSCCSCC
T ss_pred ccCCEEECCCCccceE----CHHHhcCc-ccCCEEECCCCcCcee
Confidence 6666666666665553 23334442 2366666666655543
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=9.7e-22 Score=194.14 Aligned_cols=236 Identities=17% Similarity=0.064 Sum_probs=147.1
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++. .+..+++|++|++++|.+....+.. +.++++|++|++++|.++......+..
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~------ 139 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN------ 139 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcC------
Confidence 56777888887777665 5557889999999998865543322 567888999999999888433222222
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+++|++|++++|.++. ..+..+..+++|++|++++|.+++... ..+++|+.|++++|.+++.
T Consensus 140 --l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 140 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp --CTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCG--------GGCTTCSEEECCSSCCSEE
T ss_pred --CCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCcccc--------ccccccceeeccccccccc
Confidence 6889999999998877 334456788999999999998877432 2245555555554444321
Q ss_pred ccccCccc----------HHH-----------------hhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE
Q 013056 322 LSKYDRSG----------PLF-----------------SLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 374 (450)
Q Consensus 322 ~~~~~~~~----------l~~-----------------~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 374 (450)
.....-+. ++. ....+..+++|+.|++++|.++. ..+..+..+++|++|
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERL 277 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGTTCSSCCEE
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC----cChhHccccccCCEE
Confidence 00000000 000 00111244667777777777765 235556677777777
Q ss_pred ecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 375 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 375 ~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+|++|++++ +| ..+..+++|++|+|++|.++. ++..+..+. +|++|++++|+|++.
T Consensus 278 ~L~~n~l~~------~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~-~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 278 YISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQFD-RLENLYLDHNSIVTL 333 (390)
T ss_dssp ECCSSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHHT-TCSEEECCSSCCCCC
T ss_pred ECCCCcCcc------cC---cccCCCCCCCEEECCCCccee-----cCccccccC-cCCEEECCCCcccee
Confidence 777777765 33 334556777777887777765 233333322 277777777777653
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=7.2e-20 Score=177.64 Aligned_cols=218 Identities=20% Similarity=0.228 Sum_probs=127.7
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.++++++.+..++. +..+++|+.|++++|.....+.. +..+++|+.|++++|.+.+... + ..
T Consensus 111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~--~----~~--- 175 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKDVTP--I----AN--- 175 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--G----GG---
T ss_pred cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCCcCCchh--h----cc---
Confidence 44556666665555444 44566666666666642222221 3456666666666666654332 1 11
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+++|++|++++|.+.+.. . +..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 176 -l~~L~~L~l~~n~l~~~~---------~-~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~- 236 (347)
T 4fmz_A 176 -LTDLYSLSLNYNQIEDIS---------P-LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL- 236 (347)
T ss_dssp -CTTCSEEECTTSCCCCCG---------G-GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred -CCCCCEEEccCCcccccc---------c-ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC-
Confidence 566777777777665521 1 4556666666666666655332 23356777777777776641
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
+. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++
T Consensus 237 --------~~----~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~------~----~~~~~l~~ 288 (347)
T 4fmz_A 237 --------SP----LANLSQLTWLEIGTNQISD-----I-NAVKDLTKLKMLNVGSNQISD------I----SVLNNLSQ 288 (347)
T ss_dssp --------GG----GTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCCEEECCSSCCCC------C----GGGGGCTT
T ss_pred --------cc----hhcCCCCCEEECCCCccCC-----C-hhHhcCCCcCEEEccCCccCC------C----hhhcCCCC
Confidence 11 2245677777777777765 2 346667777777777777766 2 23455577
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
|++|++++|.++.. .+..+..+ .+|++|++++|++++..|
T Consensus 289 L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 289 LNSLFLNNNQLGNE----DMEVIGGL-TNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSEEECCSSCCCGG----GHHHHHTC-TTCSEEECCSSSCCCCGG
T ss_pred CCEEECcCCcCCCc----ChhHhhcc-ccCCEEEccCCccccccC
Confidence 77777777777765 33445553 337777777777766544
No 25
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=3.7e-19 Score=185.14 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred chhhcccccCcchhh-hHhhh-cCCCccEEEeeccc-ChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056 163 YARCLRLQNALCVEE-TCQLL-RESKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 239 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-~~~l~-~~~~L~~L~Ls~n~-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 239 (450)
.++.++++++.+... +..+. .+++|++|++++|. +... ....+..++++|++|++++|.+++.+...+..
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~---- 178 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLSH---- 178 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGGG----
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHHH----
Confidence 344555555544432 23333 56778888887773 3221 12223456777888888877766554433322
Q ss_pred cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC
Q 013056 240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 316 (450)
Q Consensus 240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 316 (450)
....+++|++|++++|. ..... ..+...+..+++|++|++++|.-.+..+.. +..+++|++|+++.+
T Consensus 179 ~~~~~~~L~~L~l~~~~-~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-----~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA-SEVSF----SALERLVTRCPNLKSLKLNRAVPLEKLATL-----LQRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCC-SCCCH----HHHHHHHHHCTTCCEEECCTTSCHHHHHHH-----HHHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccC-CcCCH----HHHHHHHHhCCCCcEEecCCCCcHHHHHHH-----HhcCCcceEcccccc
Confidence 11125678888887775 21111 134444556788888888877321212211 122456666655444
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.2e-21 Score=196.70 Aligned_cols=228 Identities=18% Similarity=0.130 Sum_probs=173.3
Q ss_pred cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
..++.++++++.+..++. .+.++++|++|+|++|.+....... +.++++|+.|+|++|.|+......+..
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTLELFDNRLTTIPNGAFVY----- 134 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEEECCSSCCSSCCTTTSCS-----
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEEECCCCcCCeeCHhHhhc-----
Confidence 356677888888877664 4558899999999999865543222 678899999999999988544333322
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+.+|++|++++|.++. .....+..+++|++|+|++| .++. .+.. .+..+++|++|+|++|.++
T Consensus 135 ---l~~L~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~----~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 135 ---LSKLKELWLRNNPIES--------IPSYAFNRIPSLRRLDLGELKRLSY-ISEG----AFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp ---CSSCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCE-ECTT----TTTTCSSCCEEECTTSCCS
T ss_pred ---cccCceeeCCCCcccc--------cCHHHhhhCcccCEeCCCCCCCcce-eCcc----hhhcccccCeecCCCCcCc
Confidence 6899999999999987 33446778899999999995 4443 2221 1345799999999999988
Q ss_pred CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 399 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 399 (450)
.. ..+..+++|+.|+|++|.|+. ..+..+..+++|+.|+|++|+|++. .+ ..+..
T Consensus 199 ~~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~ 253 (440)
T 3zyj_A 199 EI-------------PNLTPLIKLDELDLSGNHLSA----IRPGSFQGLMHLQKLWMIQSQIQVI-----ER---NAFDN 253 (440)
T ss_dssp SC-------------CCCTTCSSCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEE-----CT---TSSTT
T ss_pred cc-------------cccCCCcccCEEECCCCccCc----cChhhhccCccCCEEECCCCceeEE-----Ch---hhhcC
Confidence 52 234467899999999999987 2467788999999999999999873 22 56788
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+++|++|+|++|+|+.. ....+..+ .+|+.|+|++|++..
T Consensus 254 l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLL----PHDLFTPL-HHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCC----CTTTTSSC-TTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCcc----ChhHhccc-cCCCEEEcCCCCccC
Confidence 89999999999999874 23344554 449999999998754
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1e-21 Score=187.44 Aligned_cols=228 Identities=17% Similarity=0.129 Sum_probs=172.7
Q ss_pred hcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhccccC
Q 013056 166 CLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKR 243 (450)
Q Consensus 166 ~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~~~ 243 (450)
.++..+..+..+|..+. ++|++|++++|.+...... .+.++++|+.|++++|.++..+ +..+..
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------- 76 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-------- 76 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCEEEEEEHHHHS--------
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHh----HhhccccCCEEECCCCccCcccCccccccc--------
Confidence 44555666665555443 6899999999996644332 2578899999999999998543 233322
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+.+|++|++++|.++. ++..+..+++|++|++++|.+++..... .+..+++|++|++++|.+.+..+
T Consensus 77 ~~~L~~L~Ls~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESSTTTT----TTTTCTTCCEEECTTSCCEECST
T ss_pred ccccCEEECCCCcccc---------ChhhcCCCCCCCEEECCCCcccccccch----hhhhccCCCEEECCCCcCCccch
Confidence 6899999999999876 3445778999999999999887643311 12457999999999999886444
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
.. +..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++. .| ..+..+++|
T Consensus 144 --------~~---~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~~L 201 (306)
T 2z66_A 144 --------GI---FNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLSSL 201 (306)
T ss_dssp --------TT---TTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCTTC
T ss_pred --------hh---cccCcCCCEEECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCc-----CH---HHhcCCCCC
Confidence 33 34678999999999998752 1566788999999999999999873 23 567888999
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
++|++++|.++... +..+..+ .+|++|++++|.|++..+
T Consensus 202 ~~L~L~~N~l~~~~----~~~~~~l-~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 202 QVLNMSHNNFFSLD----TFPYKCL-NSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CEEECTTSCCSBCC----SGGGTTC-TTCCEEECTTSCCCBCSS
T ss_pred CEEECCCCccCccC----hhhccCc-ccCCEeECCCCCCcccCH
Confidence 99999999998742 2235553 459999999999988765
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=7.5e-23 Score=196.03 Aligned_cols=226 Identities=19% Similarity=0.208 Sum_probs=174.6
Q ss_pred chhhccccc-Ccch-hhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 163 YARCLRLQN-ALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 163 ~l~~l~L~~-~~~~-~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
.++.+++++ +.+. .++..+.++++|++|++++|.+....+.. +.++++|++|++++|.|++..+..+..
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~----- 147 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISS----- 147 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGG-----
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHhc-----
Confidence 455666663 4443 46667789999999999999976443332 578899999999999988655544433
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCC-CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+++|++|++++|.+++ .++..+..++ +|++|++++|.+++..+..+ ..+. |++|++++|.++
T Consensus 148 ---l~~L~~L~L~~N~l~~--------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-----~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 148 ---LPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----ANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp ---CTTCCEEECCSSCCEE--------ECCGGGGCCCTTCCEEECCSSEEEEECCGGG-----GGCC-CSEEECCSSEEE
T ss_pred ---CCCCCeEECcCCcccC--------cCCHHHhhhhhcCcEEECcCCeeeccCChHH-----hCCc-ccEEECcCCccc
Confidence 6999999999999986 4566777887 99999999999987666655 3344 999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 399 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 399 (450)
+..+ ..+. .+++|+.|+|++|.++. .+..+..+++|++|+|++|.|++. +| ..+..
T Consensus 211 ~~~~--------~~~~---~l~~L~~L~L~~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~-----~p---~~l~~ 266 (313)
T 1ogq_A 211 GDAS--------VLFG---SDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGT-----LP---QGLTQ 266 (313)
T ss_dssp ECCG--------GGCC---TTSCCSEEECCSSEECC-----BGGGCCCCTTCCEEECCSSCCEEC-----CC---GGGGG
T ss_pred CcCC--------HHHh---cCCCCCEEECCCCceee-----ecCcccccCCCCEEECcCCcccCc-----CC---hHHhc
Confidence 7544 4444 67999999999999986 233478899999999999999854 55 56788
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC-CCc
Q 013056 400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN-LGR 444 (450)
Q Consensus 400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~-l~~ 444 (450)
+++|++|+|++|+++.. ++.. ..+ ++|+.+++++|+ +.+
T Consensus 267 l~~L~~L~Ls~N~l~~~----ip~~-~~l-~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGE----IPQG-GNL-QRFDVSAYANNKCLCG 306 (313)
T ss_dssp CTTCCEEECCSSEEEEE----CCCS-TTG-GGSCGGGTCSSSEEES
T ss_pred CcCCCEEECcCCccccc----CCCC-ccc-cccChHHhcCCCCccC
Confidence 89999999999998864 3332 332 239999999998 444
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=9.5e-20 Score=175.92 Aligned_cols=210 Identities=21% Similarity=0.261 Sum_probs=164.2
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 264 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~ 264 (450)
++++.|++++|.+...... ...+++|++|++++|.+++.....+... +++|++|++++|.+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~-------~~~L~~L~L~~~~l~~----- 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQ-------CSKLQNLSLEGLRLSD----- 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTT-------BCCCSEEECTTCBCCH-----
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhh-------CCCCCEEeCcCcccCH-----
Confidence 7899999999985554333 3467999999999999987755444332 7999999999999887
Q ss_pred hHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCC-CCCCcccccCcccHHHhhhCCCCCC-
Q 013056 265 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQ- 341 (450)
Q Consensus 265 ~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~~l~- 341 (450)
..+..++.+++|++|++++| .+++.+...+.. .+++|++|++++| .+++. .++..+. .++
T Consensus 133 ---~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~-------~~~~~~~---~l~~ 195 (336)
T 2ast_B 133 ---PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS----SCSRLDELNLSWCFDFTEK-------HVQVAVA---HVSE 195 (336)
T ss_dssp ---HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH----HCTTCCEEECCCCTTCCHH-------HHHHHHH---HSCT
T ss_pred ---HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh----cCCCCCEEcCCCCCCcChH-------HHHHHHH---hccc
Confidence 77888889999999999999 798765554433 3799999999999 88752 1234455 457
Q ss_pred ceeEEEccCC--CCChhhHHHHHHHhhcCCCCCEEecCCCC-CChhhHHHHHHHHHhhcCCCCCcCEEEccCC-CCChhH
Q 013056 342 SLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPLVELYLENC-ELSGRG 417 (450)
Q Consensus 342 ~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n-~l~~~g 417 (450)
+|++|++++| .+++. .++..+..+++|++|++++|. +++.++ ..+..+++|++|++++| .+++.+
T Consensus 196 ~L~~L~l~~~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKS---DLSTLVRRCPNLVHLDLSDSVMLKNDCF--------QEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp TCCEEECCSCGGGSCHH---HHHHHHHHCTTCSEEECTTCTTCCGGGG--------GGGGGCTTCCEEECTTCTTCCGGG
T ss_pred CCCEEEeCCCcccCCHH---HHHHHHhhCCCCCEEeCCCCCcCCHHHH--------HHHhCCCCCCEeeCCCCCCCCHHH
Confidence 9999999999 67754 467778889999999999999 787643 33556699999999999 577765
Q ss_pred HHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 418 VSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 418 ~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+ ..+..+ ++|++|++++| ++++
T Consensus 265 ~----~~l~~~-~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 265 L----LELGEI-PTLKTLQVFGI-VPDG 286 (336)
T ss_dssp G----GGGGGC-TTCCEEECTTS-SCTT
T ss_pred H----HHHhcC-CCCCEEeccCc-cCHH
Confidence 4 334553 44999999999 7664
No 30
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=9.2e-19 Score=182.09 Aligned_cols=249 Identities=17% Similarity=0.160 Sum_probs=140.2
Q ss_pred chhhcccccCcchhh-hHhhhc-CC-CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056 163 YARCLRLQNALCVEE-TCQLLR-ES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 239 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-~~~l~~-~~-~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 239 (450)
.++.++++++.+... +..+.. ++ +|++|++++|.... ......+..++++|++|+|++|.+++.+...+...+..
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 445566666654432 233333 33 48888888876211 11123335677888888888887766543333222222
Q ss_pred cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+++|++|++++|.++..... .+...+.++++|++|++++|.+.+ .+..+ ..+++|++|+++.+...
T Consensus 191 ----~~~L~~L~L~~n~~~~~~~~----~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-----~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 191 ----NTSLEVLNFYMTEFAKISPK----DLETIARNCRSLVSVKVGDFEILE-LVGFF-----KAAANLEEFCGGSLNED 256 (592)
T ss_dssp ----CCCCCEEECTTCCCSSCCHH----HHHHHHHHCTTCCEEECSSCBGGG-GHHHH-----HHCTTCCEEEECBCCCC
T ss_pred ----CCCccEEEeeccCCCccCHH----HHHHHHhhCCCCcEEeccCccHHH-HHHHH-----hhhhHHHhhcccccccc
Confidence 68888888888888743322 566667778888888888887766 34333 23688888888753211
Q ss_pred Cc---c---------------cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056 320 GW---L---------------SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 381 (450)
Q Consensus 320 ~~---~---------------~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 381 (450)
.. . .......++..+. .+++|++|+|++|.+++.+. +..+..+++|++|+++ +.+
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~---~~~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~ 329 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP---FAAQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVI 329 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG---GGGGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGG
T ss_pred cchHHHHHHhhccccccccCccccchhHHHHHHh---hcCCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-Ccc
Confidence 00 0 0001122333333 45788999999998877653 3335566666666666 555
Q ss_pred ChhhHHHHHHHHHhhcCCCCCcCEEEcc-----------CCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 382 EDDGIRSLIPYFVQASERCNPLVELYLE-----------NCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 382 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~-----------~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
++.|+..++ ..+++|++|+++ .|.+++.|...+...+.+ |++|+++.|.+++.
T Consensus 330 ~~~~l~~~~-------~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~----L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 330 GDRGLEVLA-------QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE----LEYMAVYVSDITNE 393 (592)
T ss_dssp HHHHHHHHH-------HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT----CSEEEEEESCCCHH
T ss_pred CHHHHHHHH-------HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc----CeEEEeecCCccHH
Confidence 555544443 123455555555 244555554444333322 55555555555443
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.3e-21 Score=195.31 Aligned_cols=229 Identities=18% Similarity=0.117 Sum_probs=175.6
Q ss_pred cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
..++.++++++.+..++. .+.++++|++|+|++|.+....... +.++++|+.|+|++|.|+......+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLNTLELFDNWLTVIPSGAFEY----- 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSBCCTTTSSS-----
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCCEEECCCCcCCccChhhhcc-----
Confidence 467788899888887654 4568899999999999866543322 578899999999999988544333322
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+++|++|++++|.++. .....+..+++|++|++++| .++. .+.. .+..+++|++|+|++|.++
T Consensus 146 ---l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~----~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 146 ---LSKLRELWLRNNPIES--------IPSYAFNRVPSLMRLDLGELKKLEY-ISEG----AFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp ---CTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECCCCTTCCE-ECTT----TTTTCTTCCEEECTTSCCS
T ss_pred ---cCCCCEEECCCCCcce--------eCHhHHhcCCcccEEeCCCCCCccc-cChh----hccCCCCCCEEECCCCccc
Confidence 6899999999999987 33446778999999999995 4444 3221 1345799999999999988
Q ss_pred CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 399 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 399 (450)
+. ..+..+++|+.|+|++|.|+. ..+..+..+++|+.|+|++|+++.. .+ ..+..
T Consensus 210 ~~-------------~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~-----~~---~~~~~ 264 (452)
T 3zyi_A 210 DM-------------PNLTPLVGLEELEMSGNHFPE----IRPGSFHGLSSLKKLWVMNSQVSLI-----ER---NAFDG 264 (452)
T ss_dssp SC-------------CCCTTCTTCCEEECTTSCCSE----ECGGGGTTCTTCCEEECTTSCCCEE-----CT---TTTTT
T ss_pred cc-------------ccccccccccEEECcCCcCcc----cCcccccCccCCCEEEeCCCcCceE-----CH---HHhcC
Confidence 62 234467899999999999997 3467789999999999999999873 23 56788
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+++|++|+|++|.|+.. ....+..+ .+|++|+|++|++...
T Consensus 265 l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSL----PHDLFTPL-RYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCCSCC----CTTSSTTC-TTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCcCCcc----ChHHhccc-cCCCEEEccCCCcCCC
Confidence 89999999999999874 22334553 4499999999987543
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.5e-21 Score=201.88 Aligned_cols=233 Identities=18% Similarity=0.086 Sum_probs=152.8
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+++.++.+..++. .+..+++|++|+|++|.+....+.. +.++++|+.|+|++|.|+......+..
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~------ 145 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN------ 145 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhcc------
Confidence 56778888888777665 5568889999999999865543332 567889999999999888443322222
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+++|++|++++|.++. ..+..++.+++|++|+|++|.+++..+ ..+++|+.|++++|.+++.
T Consensus 146 --l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 146 --TPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp --CTTCCEEECCSSCCCB--------CCTTTTTTCTTCCEEECTTSCCSBCCG--------GGCTTCSEEECCSSCCSEE
T ss_pred --CCCCCEEEeeCCcCCC--------CChhhhhcCCcCcEEECcCCCCCCcCh--------hhhhhhhhhhcccCccccc
Confidence 6889999999998887 344567788999999999998877432 2245555554444443321
Q ss_pred ccccC----------------------------cccH--HHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCC
Q 013056 322 LSKYD----------------------------RSGP--LFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 371 (450)
Q Consensus 322 ~~~~~----------------------------~~~l--~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 371 (450)
..... ...+ +..+. .+++|+.|+|++|.++. ..|..+..+++|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L 280 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL---NYPGLVEVDLSYNELEK----IMYHPFVKMQRL 280 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG---GCTTCSEEECCSSCCCE----EESGGGTTCSSC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc---cCCCCCEEECCCCccCC----CCHHHhcCccCC
Confidence 00000 0000 01222 45677777888777776 245667777888
Q ss_pred CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+.|+|++|.++. +| ..+..+++|++|+|++|.++. ++..+..+. +|++|+|++|.|++.
T Consensus 281 ~~L~Ls~N~l~~------l~---~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~-~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 281 ERLYISNNRLVA------LN---LYGQPIPTLKVLDLSHNHLLH-----VERNQPQFD-RLENLYLDHNSIVTL 339 (597)
T ss_dssp CEEECTTSCCCE------EE---CSSSCCTTCCEEECCSSCCCC-----CGGGHHHHT-TCSEEECCSSCCCCC
T ss_pred CEEECCCCCCCC------CC---cccccCCCCcEEECCCCCCCc-----cCcccccCC-CCCEEECCCCCCCCc
Confidence 888888888776 33 344566788888888888775 333344432 377888887777654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=1.3e-21 Score=193.25 Aligned_cols=230 Identities=21% Similarity=0.213 Sum_probs=168.4
Q ss_pred chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++.. +.++++|++|++++|.+...... .+.++++|++|++++|.++...+..+..
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 163 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQA------ 163 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTSS------
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhccC------
Confidence 567889999998887655 45889999999999997644332 2568899999999999998654443322
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHH---------hh---------------------cCCCCCCEEecCCCCCCh
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVS---------FL---------------------SSGRSLCSLKLRHCHLDR 291 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~---------~l---------------------~~~~~L~~L~Ls~n~l~~ 291 (450)
+++|++|++++|.++..+...++. +.. .+ ...++|++|++++|.+++
T Consensus 164 --l~~L~~L~l~~n~l~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 164 --TTSLQNLQLSSNRLTHVDLSLIPS-LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240 (390)
T ss_dssp --CTTCCEEECCSSCCSBCCGGGCTT-CSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred --CCCCCEEECCCCcCCccccccccc-cceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence 689999999999998854321110 000 00 011356666667776665
Q ss_pred hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCC
Q 013056 292 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL 371 (450)
Q Consensus 292 ~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 371 (450)
. .. +..+++|++|++++|.+++..+ ..+. .+++|+.|+|++|+++. ++..+..+++|
T Consensus 241 ~--~~-----l~~l~~L~~L~Ls~n~l~~~~~--------~~~~---~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L 297 (390)
T 3o6n_A 241 T--AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERLYISNNRLVA-----LNLYGQPIPTL 297 (390)
T ss_dssp C--GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEEECCSSCCCE-----EECSSSCCTTC
T ss_pred c--HH-----HcCCCCccEEECCCCcCCCcCh--------hHcc---ccccCCEEECCCCcCcc-----cCcccCCCCCC
Confidence 3 11 2457899999999999887544 4444 67899999999999987 56666788999
Q ss_pred CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
++|+|++|+++. +| ..+..+++|++|++++|.|+... +..+ .+|++|++++|+++..
T Consensus 298 ~~L~L~~n~l~~------~~---~~~~~l~~L~~L~L~~N~i~~~~-------~~~~-~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 298 KVLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LSTH-HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CEEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CCTT-CCCSEEECCSSCEEHH
T ss_pred CEEECCCCccee------cC---ccccccCcCCEEECCCCccceeC-------chhh-ccCCEEEcCCCCccch
Confidence 999999999986 33 33445589999999999998842 4443 4499999999998764
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=2.4e-21 Score=202.37 Aligned_cols=94 Identities=24% Similarity=0.295 Sum_probs=56.3
Q ss_pred CCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHH
Q 013056 339 SLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGV 418 (450)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~ 418 (450)
.+++|++|++++|.+++..+. .+..+..+++|++|++++|++++. .| ..+..+++|++|+|++|+++..
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~-- 515 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCDLSSI-----DQ---HAFTSLKMMNHVDLSHNRLTSS-- 515 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEECCSSCCCGG--
T ss_pred CCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCccCcc-----Ch---hhhccccCCCEEECCCCccCcC--
Confidence 456666666666666542100 113355666777777777766652 22 4566667777777777777765
Q ss_pred HHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 419 SQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 419 ~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
.++.+..+. .| +|++++|++++..|
T Consensus 516 --~~~~l~~l~-~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 516 --SIEALSHLK-GI-YLNLASNHISIILP 540 (606)
T ss_dssp --GGGGGTTCC-SC-EEECCSSCCCCCCG
T ss_pred --ChhHhCccc-cc-EEECcCCcccccCH
Confidence 345555533 36 77777777776544
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.4e-21 Score=181.89 Aligned_cols=231 Identities=16% Similarity=0.070 Sum_probs=173.9
Q ss_pred cchhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhc
Q 013056 162 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS 239 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~ 239 (450)
..++.++++++.+..++.. +..+++|++|++++|.+....... +.++++|++|++++|. ++...+..+..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~---- 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG---- 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT----
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC----
Confidence 3567778888888877654 558899999999999865542222 5688999999999997 77554444333
Q ss_pred cccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 240 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+++|++|++++|.++. ..+..+..+++|++|++++|.++...+..+ ..+++|++|++++|.++
T Consensus 104 ----l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 104 ----LGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDTF-----RDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp ----CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCC
T ss_pred ----CcCCCEEECCCCcCCE--------ECHhHhhCCcCCCEEECCCCcccccCHhHh-----ccCCCccEEECCCCccc
Confidence 6899999999999988 344567789999999999999987443323 45799999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 399 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 399 (450)
+..+ ..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+++. .+ ..+..
T Consensus 167 ~~~~-----------~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~ 223 (285)
T 1ozn_A 167 SVPE-----------RAFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL-----PT---EALAP 223 (285)
T ss_dssp EECT-----------TTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC-----CH---HHHTT
T ss_pred ccCH-----------HHhcCccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcC-----CH---HHccc
Confidence 6333 2334679999999999999973 477788999999999999999873 22 45778
Q ss_pred CCCcCEEEccCCCCChh-HHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 400 CNPLVELYLENCELSGR-GVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 400 ~~~L~~L~L~~n~l~~~-g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+++|++|++++|.++.. ....+...+.. +..+.|.+....|
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~-------~~~~~~~~~c~~p 265 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRARPLWAWLQK-------FRGSSSEVPCSLP 265 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHH-------CCSEECCCBEEES
T ss_pred CcccCEEeccCCCccCCCCcHHHHHHHHh-------cccccCccccCCc
Confidence 89999999999998642 22233444443 3345666665554
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.2e-19 Score=175.99 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=177.0
Q ss_pred hccccccceecccc------c--chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEE
Q 013056 148 CDYSKLSYHCQQFG------H--YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE 219 (450)
Q Consensus 148 ~~l~~L~l~~~~~~------~--~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~ 219 (450)
.+++.+.++...+. . .++.+++.+|.....+..+..+++|++|++++|.+..... +..+++|+.|+
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLS 183 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEE
Confidence 66677766554221 1 5577888888655556667889999999999999655433 56889999999
Q ss_pred ccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH
Q 013056 220 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 299 (450)
Q Consensus 220 Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 299 (450)
+++|.+++... + .. +.+|+.|++++|.+++.. + +..+++|++|++++|.+++..+
T Consensus 184 l~~n~l~~~~~--~----~~----l~~L~~L~l~~n~l~~~~--------~--~~~~~~L~~L~l~~n~l~~~~~----- 238 (347)
T 4fmz_A 184 LNYNQIEDISP--L----AS----LTSLHYFTAYVNQITDIT--------P--VANMTRLNSLKIGNNKITDLSP----- 238 (347)
T ss_dssp CTTSCCCCCGG--G----GG----CTTCCEEECCSSCCCCCG--------G--GGGCTTCCEEECCSSCCCCCGG-----
T ss_pred ccCCccccccc--c----cC----CCccceeecccCCCCCCc--------h--hhcCCcCCEEEccCCccCCCcc-----
Confidence 99999886443 2 22 689999999999998721 1 6788999999999999987443
Q ss_pred HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056 300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379 (450)
Q Consensus 300 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 379 (450)
+..+++|++|++++|.+++. ..+ ..+++|+.|++++|.+++ + +.+..+++|++|++++|
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~----------~~~---~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI----------NAV---KDLTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC----------GGG---TTCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSS
T ss_pred --hhcCCCCCEEECCCCccCCC----------hhH---hcCCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCC
Confidence 35589999999999998862 223 367899999999999997 3 45889999999999999
Q ss_pred CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 380 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
.+++.+ + ..+..+++|++|++++|.++.. .. +..+. +|++|++++|+|+.
T Consensus 298 ~l~~~~-----~---~~l~~l~~L~~L~L~~n~l~~~-----~~-~~~l~-~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 298 QLGNED-----M---EVIGGLTNLTTLFLSQNHITDI-----RP-LASLS-KMDSADFANQVIKK 347 (347)
T ss_dssp CCCGGG-----H---HHHHTCTTCSEEECCSSSCCCC-----GG-GGGCT-TCSEESSSCC----
T ss_pred cCCCcC-----h---hHhhccccCCEEEccCCccccc-----cC-hhhhh-ccceeehhhhcccC
Confidence 998853 2 3456679999999999999984 22 56644 49999999999863
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.4e-20 Score=196.47 Aligned_cols=135 Identities=15% Similarity=0.083 Sum_probs=101.1
Q ss_pred chhhcccccCcchhhh-HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+++++|.+..+. ..+.++++|++|++++|.+....+.. +.++++|++|++++|.|+...+..+..
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~~------ 127 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLHN------ 127 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCTT------
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhcc------
Confidence 5677888888877654 45668899999999999865443322 568899999999999988654444322
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCc--EEeccCCCCC
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS--ILDLSGNSIG 319 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~--~L~Ls~n~l~ 319 (450)
+.+|++|++++|.++..... .+..+++|++|++++|.+++..+..+ ..+++|+ +|++++|.+.
T Consensus 128 --l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 128 --QKTLESLYLGSNHISSIKLP--------KGFPTEKLKVLDFQNNAIHYLSKEDM-----SSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp --CTTCCEEECCSSCCCCCCCC--------TTCCCTTCCEEECCSSCCCEECHHHH-----HTTTTCCSEEEECTTCCCC
T ss_pred --CCcccEEECCCCcccccCcc--------cccCCcccCEEEcccCcccccChhhh-----hhhcccceeEEecCCCccC
Confidence 68999999999998874321 22348999999999999988666555 3478888 8999999887
Q ss_pred Ccc
Q 013056 320 GWL 322 (450)
Q Consensus 320 ~~~ 322 (450)
+..
T Consensus 193 ~~~ 195 (606)
T 3t6q_A 193 GIE 195 (606)
T ss_dssp EEC
T ss_pred ccC
Confidence 643
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=1.2e-20 Score=191.31 Aligned_cols=232 Identities=17% Similarity=0.113 Sum_probs=167.9
Q ss_pred chhhcccccCcchhh-hHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..+ +..+.++++|++|+|++|.+...... .+.++++|+.|+|++|.++...+..+..
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------ 126 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQD------ 126 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc----cccCCCCCCEEECCCCccccCChhHccc------
Confidence 567777888777765 34555778888888888875543322 2467788888888888887654433322
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+.+|++|++++|.++. ..+..+..+++|++|+|++|.+++..+..+ ..+++|+.|++++|.+.+.
T Consensus 127 --l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 127 --LYNLKSLEVGDNDLVY--------ISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp --CTTCCEEEECCTTCCE--------ECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE
T ss_pred --cccCCEEECCCCccce--------eChhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe
Confidence 6788888888888876 334456678888889988888877444333 4578899999998888764
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
.+ ..+..+++|+.|++++|.+.. .++.......+|++|+|++|.++. +|. ..+..++
T Consensus 192 ~~-----------~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~--~~~~~l~ 248 (477)
T 2id5_A 192 RD-----------YSFKRLYRLKVLEISHWPYLD----TMTPNCLYGLNLTSLSITHCNLTA------VPY--LAVRHLV 248 (477)
T ss_dssp CT-----------TCSCSCTTCCEEEEECCTTCC----EECTTTTTTCCCSEEEEESSCCCS------CCH--HHHTTCT
T ss_pred Ch-----------hhcccCcccceeeCCCCcccc----ccCcccccCccccEEECcCCcccc------cCH--HHhcCcc
Confidence 33 334467889999999986554 355555666789999999999987 332 4567789
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+|++|+|++|.|+.. .+..+..+ .+|++|+|++|.+++..+
T Consensus 249 ~L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 249 YLRFLNLSYNPISTI----EGSMLHEL-LRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TCCEEECCSSCCCEE----CTTSCTTC-TTCCEEECCSSCCSEECT
T ss_pred ccCeeECCCCcCCcc----Chhhcccc-ccCCEEECCCCccceECH
Confidence 999999999999875 23345554 349999999999987654
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=3.5e-20 Score=177.37 Aligned_cols=210 Identities=22% Similarity=0.167 Sum_probs=158.5
Q ss_pred chhhcccccCcch-hhhHhh--hcCCCccEEEeecccChHHHHHHHHHH-HhcCCCccEEEccCCCCChhHHHHHHHHHh
Q 013056 163 YARCLRLQNALCV-EETCQL--LRESKLQSLVLRWIRFEEHVQALCKLL-IQNSETLASLEFLHCKLSPSFVEGICRSLC 238 (450)
Q Consensus 163 ~l~~l~L~~~~~~-~~~~~l--~~~~~L~~L~Ls~n~~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 238 (450)
.++.++++++.+. .++..+ ..+++|++|++++|.+... +..+..+ ....++|++|++++|.|+...+..+..
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~--- 171 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV--- 171 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC---
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc---
Confidence 5667788888776 355554 5789999999999997665 2222222 112389999999999998655444432
Q ss_pred ccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhh--cCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC
Q 013056 239 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN 316 (450)
Q Consensus 239 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n 316 (450)
+++|++|++++|++++ ...++..+ ..+++|++|+|++|.+++. ..+...++..+++|++|++++|
T Consensus 172 -----l~~L~~L~Ls~N~l~~------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 172 -----FPALSTLDLSDNPELG------ERGLISALCPLKFPTLQVLALRNAGMETP--SGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp -----CSSCCEEECCSCTTCH------HHHHHHHSCTTSCTTCCEEECTTSCCCCH--HHHHHHHHHTTCCCSEEECTTS
T ss_pred -----CCCCCEEECCCCCcCc------chHHHHHHHhccCCCCCEEECCCCcCcch--HHHHHHHHhcCCCCCEEECCCC
Confidence 6899999999999865 01234444 7899999999999999852 1233444566899999999999
Q ss_pred CCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhh
Q 013056 317 SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQA 396 (450)
Q Consensus 317 ~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~ 396 (450)
.+++..+ ...+..+++|+.|+|++|.|+. +|..+. ++|++|+|++|+|++ +| .
T Consensus 239 ~l~~~~~----------~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~--~~L~~L~Ls~N~l~~------~p---~- 291 (312)
T 1wwl_A 239 SLRDAAG----------APSCDWPSQLNSLNLSFTGLKQ-----VPKGLP--AKLSVLDLSYNRLDR------NP---S- 291 (312)
T ss_dssp CCCSSCC----------CSCCCCCTTCCEEECTTSCCSS-----CCSSCC--SEEEEEECCSSCCCS------CC---C-
T ss_pred cCCcccc----------hhhhhhcCCCCEEECCCCccCh-----hhhhcc--CCceEEECCCCCCCC------Ch---h-
Confidence 9987432 1233456899999999999995 676665 899999999999988 44 3
Q ss_pred cCCCCCcCEEEccCCCCChh
Q 013056 397 SERCNPLVELYLENCELSGR 416 (450)
Q Consensus 397 l~~~~~L~~L~L~~n~l~~~ 416 (450)
+..+++|++|++++|+|++.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTTSCEEEEEECTTCTTTCC
T ss_pred HhhCCCCCEEeccCCCCCCC
Confidence 67889999999999999864
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=3.9e-21 Score=200.37 Aligned_cols=231 Identities=21% Similarity=0.206 Sum_probs=170.9
Q ss_pred chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.|++++|.+..++... .++++|+.|+|++|.+....... +.++++|+.|+|++|.|+...+..+..
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 169 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQA------ 169 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTT------
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhc------
Confidence 5678899999988877665 58899999999999976543332 578899999999999998765544433
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHH--------Hhhc---------------------CCCCCCEEecCCCCCChh
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELV--------SFLS---------------------SGRSLCSLKLRHCHLDRD 292 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~--------~~l~---------------------~~~~L~~L~Ls~n~l~~~ 292 (450)
+++|++|++++|.++......++.... ..+. ..++|+.|+|++|.+++.
T Consensus 170 --l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 170 --TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247 (597)
T ss_dssp --CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC
T ss_pred --CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC
Confidence 689999999999998854321110000 0000 012466666666666652
Q ss_pred HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCC
Q 013056 293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 372 (450)
Q Consensus 293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 372 (450)
.. +..+++|++|+|++|.+.+..+ ..++ .+++|+.|+|++|.++. ++..+..+++|+
T Consensus 248 --~~-----l~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~ 304 (597)
T 3oja_B 248 --AW-----LLNYPGLVEVDLSYNELEKIMY--------HPFV---KMQRLERLYISNNRLVA-----LNLYGQPIPTLK 304 (597)
T ss_dssp --GG-----GGGCTTCSEEECCSSCCCEEES--------GGGT---TCSSCCEEECTTSCCCE-----EECSSSCCTTCC
T ss_pred --hh-----hccCCCCCEEECCCCccCCCCH--------HHhc---CccCCCEEECCCCCCCC-----CCcccccCCCCc
Confidence 11 2457899999999999987555 4555 67899999999999997 666677899999
Q ss_pred EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 373 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 373 ~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
.|+|++|.++. +| ..+..+++|++|+|++|.|+... +..+ .+|+.|++++|++.+.
T Consensus 305 ~L~Ls~N~l~~------i~---~~~~~l~~L~~L~L~~N~l~~~~-------~~~~-~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 305 VLDLSHNHLLH------VE---RNQPQFDRLENLYLDHNSIVTLK-------LSTH-HTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCCCC------CG---GGHHHHTTCSEEECCSSCCCCCC-------CCTT-CCCSEEECCSSCEEHH
T ss_pred EEECCCCCCCc------cC---cccccCCCCCEEECCCCCCCCcC-------hhhc-CCCCEEEeeCCCCCCh
Confidence 99999999986 44 33455689999999999998842 4443 3599999999998754
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=4.7e-21 Score=183.27 Aligned_cols=216 Identities=16% Similarity=0.064 Sum_probs=151.4
Q ss_pred cCCCccEEEeecccChHHHHHHHHHHH--hcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCC
Q 013056 183 RESKLQSLVLRWIRFEEHVQALCKLLI--QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 260 (450)
Q Consensus 183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~ 260 (450)
..++|++|++++|.+....+.. + .++++|++|++++|.+++..+..-...+.. +++|++|++++|.++.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~- 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPL----PLEATGLALSSLRLRNVSWATGRSWLAELQQWL----KPGLKVLSIAQAHSPA- 159 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCC----SSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB----CSCCCEEEEECCSSCC-
T ss_pred ccCceeEEEeeCCEeccchhhh----hhhccCCCCCEEEeecccccchhhhhHHHHhhh----ccCCCEEEeeCCCcch-
Confidence 4467999999999865443321 2 577899999999999886432111112221 6889999999999977
Q ss_pred CchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHh-hhCCCC
Q 013056 261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS-LGAGKS 339 (450)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~-l~~~~~ 339 (450)
..+..++.+++|++|+|++|++.+...... ......+++|++|+|++|.++.... .+.. +. .
T Consensus 160 -------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~------~~~~l~~---~ 222 (310)
T 4glp_A 160 -------FSCEQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTG------VCAALAA---A 222 (310)
T ss_dssp -------CCTTSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHH------HHHHHHH---H
T ss_pred -------hhHHHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHH------HHHHHHh---c
Confidence 344567788999999999998765321110 1112457889999999999875211 1122 23 4
Q ss_pred CCceeEEEccCCCCChhhHHHHHHHhhcC---CCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh
Q 013056 340 LQSLRLLNLRGNNLCKADARDLGSALVHI---PNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 416 (450)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 416 (450)
+++|++|+|++|.|++ ..|..+..+ ++|++|+|++|+|+. +| ..+. ++|++|+|++|+|+..
T Consensus 223 l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp---~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNSLNLSFAGLEQ------VP---KGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp TCCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCCEECCSSCCCS------CC---SCCC--SCCSCEECCSCCCCSC
T ss_pred CCCCCEEECCCCCCCc----cchhhHHhccCcCcCCEEECCCCCCCc------hh---hhhc--CCCCEEECCCCcCCCC
Confidence 5889999999999987 235556655 699999999999986 55 3343 7999999999999873
Q ss_pred HHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 417 GVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 417 g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
+. +..+ .+|++|++++|+|++.+
T Consensus 288 -----~~-~~~l-~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 288 -----PQ-PDEL-PEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp -----CC-TTSC-CCCSCEECSSTTTSCCC
T ss_pred -----ch-hhhC-CCccEEECcCCCCCCCC
Confidence 21 3443 44999999999998753
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=2.8e-21 Score=186.61 Aligned_cols=231 Identities=17% Similarity=0.120 Sum_probs=122.5
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++. .+.++++|++|++++|.+....+.. +.++++|++|++++|.++......
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~--------- 121 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLVEIPPNL--------- 121 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCCSCCSSC---------
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCCccCccc---------
Confidence 34455555555554433 3445566666666666544332211 345566666666666555211000
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCC----------------
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS---------------- 305 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~---------------- 305 (450)
..+|++|++++|.++.. ....+..+++|++|++++|.++..+... ..+..+
T Consensus 122 --~~~L~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 122 --PSSLVELRIHDNRIRKV--------PKGVFSGLRNMNCIEMGGNPLENSGFEP---GAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp --CTTCCEEECCSSCCCCC--------CSGGGSSCSSCCEEECCSCCCBGGGSCT---TSSCSCCCSCCBCCSSBCSSCC
T ss_pred --cccCCEEECCCCccCcc--------CHhHhCCCccCCEEECCCCccccCCCCc---ccccCCccCEEECcCCCCCccC
Confidence 24566666666665542 2223445556666666666554311100 001111
Q ss_pred ----CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCC
Q 013056 306 ----SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTI 381 (450)
Q Consensus 306 ----~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l 381 (450)
++|++|++++|.+++..+ ..+..+++|+.|+|++|.++. ..+..+..+++|++|+|++|++
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~-----------~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIEL-----------EDLLRYSKLYRLGLGHNQIRM----IENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCT-----------TSSTTCTTCSCCBCCSSCCCC----CCTTGGGGCTTCCEEECCSSCC
T ss_pred ccccCCCCEEECCCCcCCccCH-----------HHhcCCCCCCEEECCCCcCCc----CChhHhhCCCCCCEEECCCCcC
Confidence 345555555555554222 223356777777888877776 2233567777888888888877
Q ss_pred ChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHH-hcCCCCCcEEECcCCCCC
Q 013056 382 EDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL-STLRRPPTSLSIADNNLG 443 (450)
Q Consensus 382 ~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l-~~l~~~L~~L~L~~N~l~ 443 (450)
+. +| ..+..+++|++|++++|.|+..+...+.... ......|+.|++++|++.
T Consensus 254 ~~------lp---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 254 SR------VP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CB------CC---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ee------cC---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 75 44 4466677788888888877764322221110 000234777888888776
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.6e-20 Score=188.37 Aligned_cols=224 Identities=18% Similarity=0.127 Sum_probs=171.5
Q ss_pred ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056 168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI 247 (450)
Q Consensus 168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L 247 (450)
...+..+..+|..+. ++++.|+|++|.+....... +.++++|+.|+|++|.|+......+.. +.+|
T Consensus 49 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~--------l~~L 114 (440)
T 3zyj_A 49 ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNG--------LANL 114 (440)
T ss_dssp ECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTT--------CSSC
T ss_pred EeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccC--------CccC
Confidence 334444555554443 68999999999966543322 678999999999999998765544433 6899
Q ss_pred eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056 248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 327 (450)
Q Consensus 248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~ 327 (450)
++|+|++|.++.. ....+..+++|++|+|++|.++...... +..+++|++|++++|+..+..+
T Consensus 115 ~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~---- 177 (440)
T 3zyj_A 115 NTLELFDNRLTTI--------PNGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYIS---- 177 (440)
T ss_dssp CEEECCSSCCSSC--------CTTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC----
T ss_pred CEEECCCCcCCee--------CHhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeC----
Confidence 9999999999883 3346778999999999999998743322 3558999999999965443222
Q ss_pred ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056 328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 407 (450)
Q Consensus 328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~ 407 (450)
. ..+..+++|+.|+|++|+++. +| .+..+++|++|+|++|.|++. .| ..+..+++|++|+
T Consensus 178 ----~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 178 ----E--GAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDELDLSGNHLSAI-----RP---GSFQGLMHLQKLW 237 (440)
T ss_dssp ----T--TTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEEECTTSCCCEE-----CT---TTTTTCTTCCEEE
T ss_pred ----c--chhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEEECCCCccCcc-----Ch---hhhccCccCCEEE
Confidence 1 234477999999999999996 54 478899999999999999873 23 6788899999999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 408 LENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 408 L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
|++|.|+.. .+..+..+ .+|++|+|++|+|++..+
T Consensus 238 L~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 238 MIQSQIQVI----ERNAFDNL-QSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CTTCCCCEE----CTTSSTTC-TTCCEEECTTSCCCCCCT
T ss_pred CCCCceeEE----ChhhhcCC-CCCCEEECCCCCCCccCh
Confidence 999999985 34456664 449999999999987543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.5e-20 Score=181.22 Aligned_cols=225 Identities=19% Similarity=0.144 Sum_probs=135.4
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++. .+.++++|++|++++|.+....+.. +.++++|++|++++|.++..... .
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~l~~~--------~- 119 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQLKELPEK--------M- 119 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCSBCCSS--------C-
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCCCCCEEECCCCcCCccChh--------h-
Confidence 44556666666665554 3446677777777777654432211 45667777777777776632110 0
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
..+|++|++++|.++. .....+..+++|++|++++|.++..+... ..+..+++|++|++++|.++..
T Consensus 120 --~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 120 --PKTLQELRVHENEITK--------VRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp --CTTCCEEECCSSCCCB--------BCHHHHTTCTTCCEEECCSSCCCGGGBCT---TGGGGCTTCCEEECCSSCCCSC
T ss_pred --cccccEEECCCCcccc--------cCHhHhcCCccccEEECCCCcCCccCcCh---hhccCCCCcCEEECCCCccccC
Confidence 2567777777777766 34445666777777777777765421110 1123467777777777776641
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
|..+. ++|++|++++|.++.. .+..+..+++|++|+|++|.+++. .+ ..+..++
T Consensus 187 ---------~~~~~-----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l~ 240 (330)
T 1xku_A 187 ---------PQGLP-----PSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV-----DN---GSLANTP 240 (330)
T ss_dssp ---------CSSCC-----TTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE-----CT---TTGGGST
T ss_pred ---------Ccccc-----ccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee-----Ch---hhccCCC
Confidence 12111 5677777777777652 245566777777777777777652 11 3455567
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
+|++|++++|.++. ++..+..+ .+|++|++++|+|++.
T Consensus 241 ~L~~L~L~~N~l~~-----lp~~l~~l-~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 241 HLRELHLNNNKLVK-----VPGGLADH-KYIQVVYLHNNNISAI 278 (330)
T ss_dssp TCCEEECCSSCCSS-----CCTTTTTC-SSCCEEECCSSCCCCC
T ss_pred CCCEEECCCCcCcc-----CChhhccC-CCcCEEECCCCcCCcc
Confidence 77777777777774 45555553 3477777777777654
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.1e-20 Score=188.32 Aligned_cols=223 Identities=19% Similarity=0.124 Sum_probs=170.3
Q ss_pred cccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCee
Q 013056 169 LQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIE 248 (450)
Q Consensus 169 L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~ 248 (450)
..+..+..+|..+. ++++.|+|++|.+....... +.++++|+.|+|++|.|+...+..+.. +.+|+
T Consensus 61 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~ 126 (452)
T 3zyi_A 61 CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNG--------LASLN 126 (452)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCC
T ss_pred ECCCCcCccCCCCC--CCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccC--------cccCC
Confidence 34444444444332 68999999999966543332 578999999999999998765544433 68999
Q ss_pred EEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcc
Q 013056 249 NLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS 328 (450)
Q Consensus 249 ~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 328 (450)
+|+|++|.++. .....+..+++|++|+|++|.++...... +..+++|++|++++|...+..+
T Consensus 127 ~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~----- 188 (452)
T 3zyi_A 127 TLELFDNWLTV--------IPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYIS----- 188 (452)
T ss_dssp EEECCSSCCSB--------CCTTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEEC-----
T ss_pred EEECCCCcCCc--------cChhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccC-----
Confidence 99999999987 33445778999999999999998643322 3558999999999965443222
Q ss_pred cHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEc
Q 013056 329 GPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYL 408 (450)
Q Consensus 329 ~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L 408 (450)
. ..+..+++|+.|+|++|+++. ++ .+..+++|++|+|++|.|++. .| ..+..+++|++|+|
T Consensus 189 ---~--~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 189 ---E--GAFEGLFNLKYLNLGMCNIKD-----MP-NLTPLVGLEELEMSGNHFPEI-----RP---GSFHGLSSLKKLWV 249 (452)
T ss_dssp ---T--TTTTTCTTCCEEECTTSCCSS-----CC-CCTTCTTCCEEECTTSCCSEE-----CG---GGGTTCTTCCEEEC
T ss_pred ---h--hhccCCCCCCEEECCCCcccc-----cc-cccccccccEEECcCCcCccc-----Cc---ccccCccCCCEEEe
Confidence 1 234477999999999999986 43 478899999999999999873 33 67888999999999
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 409 ENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 409 ~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
++|.|+.. .+..+..+ .+|++|+|++|.|++..+
T Consensus 250 ~~n~l~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 250 MNSQVSLI----ERNAFDGL-ASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp TTSCCCEE----CTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred CCCcCceE----CHHHhcCC-CCCCEEECCCCcCCccCh
Confidence 99999885 34556664 449999999999986543
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.2e-20 Score=198.12 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=89.9
Q ss_pred chhhcccccCcchh------------------hhHhhh--cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC
Q 013056 163 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 222 (450)
Q Consensus 163 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~ 222 (450)
.++.++++++.+.. +|..+. ++++|++|++++|.+...++.. +.++++|+.|++++
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVAC 282 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEECTT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEECcC
Confidence 56677777777776 777777 7888888888888754443322 56778888888888
Q ss_pred CC-CCh-hHHHHHHHH--HhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHH--hhcCCCCCCEEecCCCCCChhHHHH
Q 013056 223 CK-LSP-SFVEGICRS--LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRM 296 (450)
Q Consensus 223 n~-l~~-~~~~~l~~~--L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~ 296 (450)
|. +++ ..+..+... +.. +++|++|++++|.++. ++. .++.+++|++|++++|.+++..+ .
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~----l~~L~~L~L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPV----GEKIQIIYIGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGG----GGTCCEEECCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred CCCCccccchHHHHhhhcccc----CCCCCEEECCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 87 877 566665441 011 3678888888887775 333 56677788888888887775444 2
Q ss_pred HHHHHhhCCCCCcEEeccCCCCC
Q 013056 297 VFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 297 l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+ ..+++|++|++++|.++
T Consensus 349 ~-----~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 349 F-----GSEIKLASLNLAYNQIT 366 (636)
T ss_dssp C-----EEEEEESEEECCSSEEE
T ss_pred h-----CCCCCCCEEECCCCccc
Confidence 2 33456666666666555
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=3e-18 Score=178.27 Aligned_cols=237 Identities=16% Similarity=0.119 Sum_probs=176.0
Q ss_pred ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056 168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI 247 (450)
Q Consensus 168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L 247 (450)
.+..+....++..+..+++|++|++++|.+.... ...++..+++|+.|+++ +.+++.+...+... +++|
T Consensus 276 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~-------~~~L 344 (592)
T 3ogk_B 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY-------CKQL 344 (592)
T ss_dssp EETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH-------CTTC
T ss_pred CccccchhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHHHHh-------CCCC
Confidence 3334434445555567899999999999854332 22346789999999999 67787777777665 7889
Q ss_pred eEEEcCC-----------CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc--
Q 013056 248 ENLSIDI-----------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS-- 314 (450)
Q Consensus 248 ~~L~L~~-----------n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-- 314 (450)
++|++++ +.+++ ..+......+++|++|+++.|.+++.++..+... +++|++|+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~-------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~l~~~ 413 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQ-------RGLIALAQGCQELEYMAVYVSDITNESLESIGTY----LKNLCDFRLVLL 413 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCH-------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH----CCSCCEEEEEEC
T ss_pred CEEEeecCccccccccccCccCH-------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh----CCCCcEEEEeec
Confidence 9999993 56655 1344556678999999999999999888877654 7899999997
Q ss_pred --CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC--CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHH
Q 013056 315 --GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN--LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLI 390 (450)
Q Consensus 315 --~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~ 390 (450)
.|.+++... ...++..+. ++++|+.|+++.|. +++.++..+ ...+++|++|+|++|.+++.|+..+
T Consensus 414 ~~~n~l~~~p~---~~~~~~~~~---~~~~L~~L~L~~~~~~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~- 483 (592)
T 3ogk_B 414 DREERITDLPL---DNGVRSLLI---GCKKLRRFAFYLRQGGLTDLGLSYI---GQYSPNVRWMLLGYVGESDEGLMEF- 483 (592)
T ss_dssp SCCSCCSSCCC---HHHHHHHHH---HCTTCCEEEEECCGGGCCHHHHHHH---HHSCTTCCEEEECSCCSSHHHHHHH-
T ss_pred CCCccccCchH---HHHHHHHHH---hCCCCCEEEEecCCCCccHHHHHHH---HHhCccceEeeccCCCCCHHHHHHH-
Confidence 556665210 011333344 46899999998664 888665444 3458899999999999999876655
Q ss_pred HHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 391 PYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 391 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
+..+++|++|+|++|.+++.++..+...+.. |++|++++|++++.+
T Consensus 484 ------~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~----L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 484 ------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPS----LRYLWVQGYRASMTG 529 (592)
T ss_dssp ------HTCCTTCCEEEEESCCCBHHHHHHHHHHCSS----CCEEEEESCBCCTTC
T ss_pred ------HhcCcccCeeeccCCCCcHHHHHHHHHhcCc----cCeeECcCCcCCHHH
Confidence 4567999999999999998877766554433 999999999999874
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.4e-20 Score=200.22 Aligned_cols=222 Identities=14% Similarity=0.185 Sum_probs=113.3
Q ss_pred hhHhhhcCCCccEEEeecccChHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 177 ETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 177 ~~~~l~~~~~L~~L~Ls~n~~~~~-------------~~~l~~~l~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
+|..+.++++|+.|+|++|.+... ....++..+. ++++|+.|+|++|.+....+..+..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------ 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------
Confidence 455555666666666666665440 0000111122 5666666666666665554443332
Q ss_pred cCCCCeeEEEcCCCC-CCCCCchhhHHHHH---HhhcCCCCCCEEecCCCCCChhHHH--HHHHHHhhCCCCCcEEeccC
Q 013056 242 KRIHKIENLSIDISS-FIENCPSSVVVELV---SFLSSGRSLCSLKLRHCHLDRDFGR--MVFSSLLEASSSLSILDLSG 315 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~---~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~ 315 (450)
+++|+.|++++|+ +++ ..++..+. ..+..+++|++|+|++|.++ ..|. .+ ..+++|++|+|++
T Consensus 514 --L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-----~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 514 --LPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-----QKMVKLGLLDCVH 582 (876)
T ss_dssp --CSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-----TTCTTCCEEECTT
T ss_pred --CCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-----hcCCCCCEEECCC
Confidence 4666666666665 432 00111111 12233446666666666665 2433 22 3356666666666
Q ss_pred CCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC-CCEEecCCCCCChhhHHHHHHHHH
Q 013056 316 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGIRSLIPYFV 394 (450)
Q Consensus 316 n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~l~~~g~~~l~~~l~ 394 (450)
|.++. +| .+..+++|+.|+|++|.++. +|..+..+++ |++|+|++|.++. +|
T Consensus 583 N~l~~---------lp----~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~------lp--- 635 (876)
T 4ecn_A 583 NKVRH---------LE----AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKY------IP--- 635 (876)
T ss_dssp SCCCB---------CC----CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCS------CC---
T ss_pred CCccc---------ch----hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCc------Cc---
Confidence 66652 22 22355666667776666663 5656666666 7777777766663 43
Q ss_pred hhcCCCC--CcCEEEccCCCCChhHHHHHHHHHhcC-CCCCcEEECcCCCCC
Q 013056 395 QASERCN--PLVELYLENCELSGRGVSQLLDTLSTL-RRPPTSLSIADNNLG 443 (450)
Q Consensus 395 ~~l~~~~--~L~~L~L~~n~l~~~g~~~l~~~l~~l-~~~L~~L~L~~N~l~ 443 (450)
..+...+ +|+.|+|++|.++... ..++..+..+ ..+|+.|+|++|.|+
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred hhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCC
Confidence 3333332 3667777777665420 0000011110 123677777777766
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=4.7e-21 Score=201.08 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=157.6
Q ss_pred CcchhhhHhhhcCCCccEEEeecccChHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChhHHHHHHHH
Q 013056 172 ALCVEETCQLLRESKLQSLVLRWIRFEEH-------------VQALCKLLIQ--NSETLASLEFLHCKLSPSFVEGICRS 236 (450)
Q Consensus 172 ~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~-------------~~~l~~~l~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~ 236 (450)
+.+..+|..+.++++|++|+|++|.+... .....+..+. ++++|++|++++|.+....+..+..
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~- 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA- 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-
Confidence 34444677777888999999998886652 0001111234 7888999999999888776655543
Q ss_pred HhccccCCCCeeEEEcCCCC-CCCCCchhhHHHHHHhhcC------CCCCCEEecCCCCCChhHHH--HHHHHHhhCCCC
Q 013056 237 LCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSS------GRSLCSLKLRHCHLDRDFGR--MVFSSLLEASSS 307 (450)
Q Consensus 237 L~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~~~l~~------~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~ 307 (450)
+++|++|++++|. +++ ..++..++. +++|++|++++|.++ ..+. .+ ..+++
T Consensus 272 -------l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-----~~l~~ 331 (636)
T 4eco_A 272 -------LPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-----QKMKK 331 (636)
T ss_dssp -------CSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-----TTCTT
T ss_pred -------CCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-----ccCCC
Confidence 6889999999887 543 024444444 388999999999887 3554 33 45788
Q ss_pred CcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC-CCEEecCCCCCChhhH
Q 013056 308 LSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN-LEILDISDNTIEDDGI 386 (450)
Q Consensus 308 L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~N~l~~~g~ 386 (450)
|++|++++|.+++. +| .+..+++|+.|++++|.++. +|..+..+++ |++|++++|.++.
T Consensus 332 L~~L~L~~N~l~g~--------ip----~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~--- 391 (636)
T 4eco_A 332 LGMLECLYNQLEGK--------LP----AFGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY--- 391 (636)
T ss_dssp CCEEECCSCCCEEE--------CC----CCEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS---
T ss_pred CCEEeCcCCcCccc--------hh----hhCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc---
Confidence 99999999988742 22 23356789999999998884 7788888888 9999999999885
Q ss_pred HHHHHHHHhhcCCC--CCcCEEEccCCCCChhHHHHHHHHHh-------cCCCCCcEEECcCCCCCc
Q 013056 387 RSLIPYFVQASERC--NPLVELYLENCELSGRGVSQLLDTLS-------TLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 387 ~~l~~~l~~~l~~~--~~L~~L~L~~n~l~~~g~~~l~~~l~-------~l~~~L~~L~L~~N~l~~ 444 (450)
+| ..+... ++|++|++++|.++.. .+..+. . ..+|++|++++|.|++
T Consensus 392 ---lp---~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~-~~~L~~L~Ls~N~l~~ 447 (636)
T 4eco_A 392 ---IP---NIFDAKSVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFK-GINVSSINLSNNQISK 447 (636)
T ss_dssp ---CC---SCCCTTCSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCC-CCCEEEEECCSSCCCS
T ss_pred ---cc---hhhhhcccCccCEEECcCCcCCCc----chhhhccccccccc-CCCCCEEECcCCccCc
Confidence 55 444443 3899999999998875 444444 3 2359999999999884
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=7e-21 Score=182.64 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=59.7
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
++|++|++++|.++. ..+..+..+++|++|++++|.+++..+..+. ..+++|++|++++|.+++.
T Consensus 120 ~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~l~~L~~L~L~~N~l~~~--- 184 (317)
T 3o53_A 120 QGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDV--- 184 (317)
T ss_dssp SSCEEEECCSSCCCS--------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEE---
T ss_pred CCCCEEECCCCCCCC--------ccchhhhccCCCCEEECCCCCCCcccHHHHh----hccCcCCEEECCCCcCccc---
Confidence 445555555555444 2222333445555555555555443322221 1234555555555554431
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 404 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 404 (450)
.....+++|++|+|++|.|+. ++..+..+++|++|+|++|+|+. +| ..+..+++|+
T Consensus 185 ----------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N~l~~------l~---~~~~~l~~L~ 240 (317)
T 3o53_A 185 ----------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQNLE 240 (317)
T ss_dssp ----------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTTCC
T ss_pred ----------ccccccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCCcccc------hh---hHhhcCCCCC
Confidence 011123455555555555553 33334455555555555555543 33 3344445555
Q ss_pred EEEccCCCCC
Q 013056 405 ELYLENCELS 414 (450)
Q Consensus 405 ~L~L~~n~l~ 414 (450)
.|++++|.++
T Consensus 241 ~L~l~~N~~~ 250 (317)
T 3o53_A 241 HFDLRGNGFH 250 (317)
T ss_dssp EEECTTCCCB
T ss_pred EEEccCCCcc
Confidence 5555555554
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3.2e-20 Score=178.00 Aligned_cols=215 Identities=19% Similarity=0.138 Sum_probs=154.1
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++. .+.++++|++|++++|.+....+ +..+++|++|++++|.|+... .
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~l~---------~-- 97 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---------V-- 97 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEEEE---------E--
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccccc---------C--
Confidence 56677777777766553 45577888888888887654332 467788888888888776422 1
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
.++|++|++++|.++.... ..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 98 --~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 98 --GPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp --CTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCT-----GGGSSEEEEECTTSCCCEE
T ss_pred --CCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhh-----hccCCCCEEECCCCCCCcc
Confidence 4778888888888876321 235788899999998887444333 3368899999999988864
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
.+ ..+. ..+++|++|+|++|.|+. ++ ....+++|++|+|++|+|++ +| ..+..++
T Consensus 160 ~~--------~~~~--~~l~~L~~L~L~~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~------l~---~~~~~l~ 214 (317)
T 3o53_A 160 NF--------AELA--ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA 214 (317)
T ss_dssp EG--------GGGG--GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred cH--------HHHh--hccCcCCEEECCCCcCcc-----cc-cccccccCCEEECCCCcCCc------ch---hhhcccC
Confidence 33 2222 145788999999999886 32 23458889999999999887 43 3366678
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~ 443 (450)
+|++|+|++|.|+. ++..+..+ .+|+.|++++|++.
T Consensus 215 ~L~~L~L~~N~l~~-----l~~~~~~l-~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 215 GVTWISLRNNKLVL-----IEKALRFS-QNLEHFDLRGNGFH 250 (317)
T ss_dssp TCSEEECTTSCCCE-----ECTTCCCC-TTCCEEECTTCCCB
T ss_pred cccEEECcCCcccc-----hhhHhhcC-CCCCEEEccCCCcc
Confidence 99999999999886 55566663 45999999999987
No 52
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.9e-20 Score=179.02 Aligned_cols=213 Identities=19% Similarity=0.139 Sum_probs=157.6
Q ss_pred chhhcccccCcchhh-hHhh--hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhc
Q 013056 163 YARCLRLQNALCVEE-TCQL--LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 239 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~-~~~l--~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 239 (450)
.++.+++++|.+... +..+ ..+++|++|++++|.+......+....+..+++|++|++++|.|+...+..+..
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---- 167 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA---- 167 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC----
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc----
Confidence 366777777776543 3344 678999999999999765322222222457899999999999997654433322
Q ss_pred cccCCCCeeEEEcCCCCCCCCCchhhHHHHH--HhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCC
Q 013056 240 KRKRIHKIENLSIDISSFIENCPSSVVVELV--SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 317 (450)
Q Consensus 240 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~ 317 (450)
+++|++|++++|++... ..+. ..+..+++|++|+|++|.++.. + ..+..++..+++|++|+|++|.
T Consensus 168 ----l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~-~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 168 ----FPALTSLDLSDNPGLGE------RGLMAALCPHKFPAIQNLALRNTGMETP-T-GVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp ----CTTCCEEECCSCTTCHH------HHHHTTSCTTSSCCCCSCBCCSSCCCCH-H-HHHHHHHHHTCCCSSEECTTSC
T ss_pred ----CCCCCEEECCCCCCccc------hhhhHHHhhhcCCCCCEEECCCCCCCch-H-HHHHHHHhcCCCCCEEECCCCC
Confidence 68999999999997651 1122 2236789999999999999752 2 2233444557999999999999
Q ss_pred CCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhc
Q 013056 318 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQAS 397 (450)
Q Consensus 318 l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l 397 (450)
+++..| ..+..+..+++|++|+|++|+|+. +|..+. ++|++|+|++|+|++ +| .+
T Consensus 236 l~~~~p--------~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~--~~L~~L~Ls~N~l~~------~~----~~ 290 (310)
T 4glp_A 236 LRATVN--------PSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP--AKLRVLDLSSNRLNR------AP----QP 290 (310)
T ss_dssp CCCCCC--------SCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC--SCCSCEECCSCCCCS------CC----CT
T ss_pred CCccch--------hhHHhccCcCcCCEEECCCCCCCc-----hhhhhc--CCCCEEECCCCcCCC------Cc----hh
Confidence 998544 445555445799999999999995 666554 799999999999987 43 25
Q ss_pred CCCCCcCEEEccCCCCChh
Q 013056 398 ERCNPLVELYLENCELSGR 416 (450)
Q Consensus 398 ~~~~~L~~L~L~~n~l~~~ 416 (450)
..+++|+.|+|++|.|++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TSCCCCSCEECSSTTTSCC
T ss_pred hhCCCccEEECcCCCCCCC
Confidence 6779999999999999874
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=2.3e-20 Score=175.04 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=155.2
Q ss_pred hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCC
Q 013056 181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 260 (450)
Q Consensus 181 l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~ 260 (450)
...+++|+.|++++|.+..... +..+++|++|++++|.+++. ..+ .. +++|++|++++|.++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~------l~~l~~L~~L~l~~n~l~~~--~~l----~~----l~~L~~L~L~~n~l~~- 99 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG------IQYLPNVRYLALGGNKLHDI--SAL----KE----LTNLTYLILTGNQLQS- 99 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT------GGGCTTCCEEECTTSCCCCC--GGG----TT----CTTCCEEECTTSCCCC-
T ss_pred cccccceeeeeeCCCCcccccc------cccCCCCcEEECCCCCCCCc--hhh----cC----CCCCCEEECCCCccCc-
Confidence 3356889999999988554321 46789999999999998863 122 22 6899999999999987
Q ss_pred CchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCC
Q 013056 261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 340 (450)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l 340 (450)
..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 100 -------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l 156 (272)
T 3rfs_A 100 -------LPNGVFDKLTNLKELVLVENQLQSLPDGVF-----DKLTNLTYLNLAHNQLQSLPK-----------GVFDKL 156 (272)
T ss_dssp -------CCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-----------TTTTTC
T ss_pred -------cChhHhcCCcCCCEEECCCCcCCccCHHHh-----ccCCCCCEEECCCCccCccCH-----------HHhccC
Confidence 334456788999999999999987443322 457899999999999886433 223467
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 420 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 420 (450)
++|+.|++++|+++. ..+..+..+++|++|++++|.+++ ++. ..+..+++|++|++++|.++..
T Consensus 157 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~~~---- 220 (272)
T 3rfs_A 157 TNLTELDLSYNQLQS----LPEGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQYIWLHDNPWDCT---- 220 (272)
T ss_dssp TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCBCCC----
T ss_pred ccCCEEECCCCCcCc----cCHHHhcCCccCCEEECCCCcCCc------cCH--HHHhCCcCCCEEEccCCCcccc----
Confidence 899999999999986 233446789999999999999987 321 4578889999999999998753
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 421 LLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 421 l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
...|+.|+++.|.+++.+|.
T Consensus 221 --------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 221 --------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp --------TTTTHHHHHHHHHTGGGBBC
T ss_pred --------CcHHHHHHHHHHhCCCcccC
Confidence 22388888888888887774
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.4e-20 Score=196.55 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=115.0
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHH-HhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc-
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELV-SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW- 321 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~- 321 (450)
+++|++|++++|.++. ..+ ..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+.
T Consensus 398 l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKR--------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CTTCCEEECTTSEEES--------TTTTTTTTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGE
T ss_pred CCCCCeeECCCCccCC--------ccChhhhhccccCCEEECcCCCCCccchhhh-----cCCCCCCEEECCCCcCCCcc
Confidence 4556666666665555 222 345566777777777777666444333 3467777777777776642
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
.+ . .+..+++|+.|+|++|.++. ..+..+..+++|++|+|++|++++. .| ..+..++
T Consensus 465 ~~--------~---~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~---~~~~~l~ 521 (606)
T 3vq2_A 465 LS--------N---VFANTTNLTFLDLSKCQLEQ----ISWGVFDTLHRLQLLNMSHNNLLFL-----DS---SHYNQLY 521 (606)
T ss_dssp EC--------S---CCTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSCE-----EG---GGTTTCT
T ss_pred hH--------H---hhccCCCCCEEECCCCcCCc----cChhhhcccccCCEEECCCCcCCCc-----CH---HHccCCC
Confidence 22 2 33467889999999999887 3466788889999999999998873 34 5678888
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+|++|++++|+|+. ++..+..+.++|++|++++|++....+
T Consensus 522 ~L~~L~l~~N~l~~-----~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 522 SLSTLDCSFNRIET-----SKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCCEEECTTSCCCC-----EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCEEECCCCcCcc-----cCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999886 565577766569999999999876543
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.4e-20 Score=175.15 Aligned_cols=209 Identities=16% Similarity=0.114 Sum_probs=107.5
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 264 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~ 264 (450)
++|++|++++|.+....... +.++++|++|++++|.++......+.. +++|++|++++|.++.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~----- 90 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS----- 90 (276)
T ss_dssp TTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE-----
T ss_pred CCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccC--------CcCCCEEECCCCccCc-----
Confidence 35666666666644332211 345566666666666665433322222 4566666666666655
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056 265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 344 (450)
Q Consensus 265 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 344 (450)
..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.. +|..+. .+++|+
T Consensus 91 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~-------l~~~~~---~l~~L~ 152 (276)
T 2z62_A 91 ---LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLE 152 (276)
T ss_dssp ---ECTTTTTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCC
T ss_pred ---cChhhhcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceec-------Cchhhc---cCCCCC
Confidence 22334555666666666666665532211 233566666666666665421 113333 346666
Q ss_pred EEEccCCCCChhhHHHHHHHhhcCCCCC----EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056 345 LLNLRGNNLCKADARDLGSALVHIPNLE----ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 420 (450)
Q Consensus 345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~----~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 420 (450)
+|++++|+++... +..+..+++|+ +|++++|.++. ++ .......+|++|++++|.++..
T Consensus 153 ~L~Ls~N~l~~~~----~~~~~~l~~L~~l~l~L~ls~n~l~~------~~---~~~~~~~~L~~L~L~~n~l~~~---- 215 (276)
T 2z62_A 153 HLDLSSNKIQSIY----CTDLRVLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLKELALDTNQLKSV---- 215 (276)
T ss_dssp EEECCSSCCCEEC----GGGGHHHHTCTTCCEEEECCSSCCCE------EC---TTSSCSCCEEEEECCSSCCSCC----
T ss_pred EEECCCCCCCcCC----HHHhhhhhhccccceeeecCCCcccc------cC---ccccCCCcccEEECCCCceeec----
Confidence 6666666666521 12222223333 66666666655 22 1122223666666666666652
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 421 LLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 421 l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
....+..+ .+|++|++++|+++...
T Consensus 216 ~~~~~~~l-~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 216 PDGIFDRL-TSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTTTTTC-CSCCEEECCSSCBCCCT
T ss_pred CHhHhccc-ccccEEEccCCcccccC
Confidence 11223332 33666666666666544
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1e-19 Score=177.16 Aligned_cols=225 Identities=16% Similarity=0.151 Sum_probs=166.2
Q ss_pred chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhcc
Q 013056 163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSK 240 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~ 240 (450)
.++.+++++|.+..++.. +.++++|++|++++|.+...... ..+.++++|+.|++++| .++...+..+..
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----- 172 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQRKDFAG----- 172 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECTTTTTT-----
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCHHHccC-----
Confidence 467778888888777766 45778888888888875532210 12457788888888888 465443333322
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 320 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 320 (450)
+++|++|++++|.++. ..+..+..+++|++|++++|.++. .+..+. ..+++|++|++++|.+++
T Consensus 173 ---l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~----~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 173 ---LTFLEELEIDASDLQS--------YEPKSLKSIQNVSHLILHMKQHIL-LLEIFV----DVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ---CCEEEEEEEEETTCCE--------ECTTTTTTCSEEEEEEEECSCSTT-HHHHHH----HHTTTEEEEEEESCBCTT
T ss_pred ---CCCCCEEECCCCCcCc--------cCHHHHhccccCCeecCCCCcccc-chhhhh----hhcccccEEECCCCcccc
Confidence 6889999999998877 345667788999999999999866 444332 336899999999999886
Q ss_pred cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056 321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 400 (450)
Q Consensus 321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 400 (450)
..+ ..+........++.++|+++.+++.++..+|..+..+++|++|+|++|+++. +|. ..+..+
T Consensus 237 ~~~--------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~------i~~--~~~~~l 300 (353)
T 2z80_A 237 FHF--------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS------VPD--GIFDRL 300 (353)
T ss_dssp CCC--------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC------CCT--TTTTTC
T ss_pred ccc--------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc------cCH--HHHhcC
Confidence 433 2233334567899999999999999999999999999999999999999986 552 346888
Q ss_pred CCcCEEEccCCCCChhH--HHHHHHHHhc
Q 013056 401 NPLVELYLENCELSGRG--VSQLLDTLST 427 (450)
Q Consensus 401 ~~L~~L~L~~n~l~~~g--~~~l~~~l~~ 427 (450)
++|++|++++|.++... ...+...+..
T Consensus 301 ~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 99999999999988753 3445556655
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=2.1e-20 Score=195.12 Aligned_cols=226 Identities=18% Similarity=0.093 Sum_probs=170.3
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhcc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSK 240 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~ 240 (450)
.++.+++.+|....++ .+ .+++|++|++++|....... +..+++|+.|++++|.++... +..+..
T Consensus 308 ~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~----- 374 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRNALSFSGCCSYSDLG----- 374 (606)
T ss_dssp CCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSSCEEEEEECCHHHHC-----
T ss_pred cCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh------hccCCCCCEEECcCCccCCCcchhhhhcc-----
Confidence 4566777777776555 44 77888888888885322221 457788999999999887542 333332
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 320 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 320 (450)
+++|++|++++|.++. ++..+..+++|++|++++|.+.+..+... +..+++|++|++++|.+.+
T Consensus 375 ---~~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 375 ---TNSLRHLDLSFNGAII---------MSANFMGLEELQHLDFQHSTLKRVTEFSA----FLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp ---CSCCCEEECCSCSEEE---------ECCCCTTCTTCCEEECTTSEEESTTTTTT----TTTCTTCCEEECTTSCCEE
T ss_pred ---CCcccEeECCCCcccc---------chhhccCCCCCCeeECCCCccCCccChhh----hhccccCCEEECcCCCCCc
Confidence 6889999999998766 23556778999999999998877544111 2457899999999999886
Q ss_pred cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056 321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 400 (450)
Q Consensus 321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 400 (450)
..+ .. +..+++|++|++++|.+++.. +|..+..+++|++|+|++|.+++. .| ..+..+
T Consensus 439 ~~~--------~~---~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~~~l 496 (606)
T 3vq2_A 439 DFD--------GI---FLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQI-----SW---GVFDTL 496 (606)
T ss_dssp CCT--------TT---TTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTC
T ss_pred cch--------hh---hcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCcc-----Ch---hhhccc
Confidence 544 33 346789999999999988621 466788999999999999999873 33 567888
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 401 NPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 401 ~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
++|++|++++|+++.. .+..+..+. +|++|++++|+|+.
T Consensus 497 ~~L~~L~Ls~N~l~~~----~~~~~~~l~-~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFL----DSSHYNQLY-SLSTLDCSFNRIET 535 (606)
T ss_dssp TTCCEEECCSSCCSCE----EGGGTTTCT-TCCEEECTTSCCCC
T ss_pred ccCCEEECCCCcCCCc----CHHHccCCC-cCCEEECCCCcCcc
Confidence 9999999999999985 466677754 49999999999984
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=183.14 Aligned_cols=229 Identities=18% Similarity=0.191 Sum_probs=165.1
Q ss_pred chhhcccccCcch-hhhHhh-----hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHH
Q 013056 163 YARCLRLQNALCV-EETCQL-----LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS 236 (450)
Q Consensus 163 ~l~~l~L~~~~~~-~~~~~l-----~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 236 (450)
.++.++++++.+. .++..+ .++++|+.+++++|.+ .........++.+ .+|+.|++++|.+.....
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~-~~L~~L~l~~n~l~~~~~------ 319 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSN-MNIKNFTVSGTRMVHMLC------ 319 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHT-CCCSEEEEESSCCCCCCC------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhccccc-CceeEEEcCCCccccccc------
Confidence 4556667776665 455555 5677888888888775 1111222222222 578888888888764321
Q ss_pred HhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCCh--hHHHHHHHHHhhCCCCCcEEecc
Q 013056 237 LCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLS 314 (450)
Q Consensus 237 L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls 314 (450)
...+++|++|++++|.+++ ..+..+..+++|++|++++|++++ ..+..+ ..+++|++|+++
T Consensus 320 ----~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-----~~l~~L~~L~Ls 382 (520)
T 2z7x_B 320 ----PSKISPFLHLDFSNNLLTD--------TVFENCGHLTELETLILQMNQLKELSKIAEMT-----TQMKSLQQLDIS 382 (520)
T ss_dssp ----CSSCCCCCEEECCSSCCCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-----TTCTTCCEEECC
T ss_pred ----hhhCCcccEEEeECCccCh--------hhhhhhccCCCCCEEEccCCccCccccchHHH-----hhCCCCCEEECC
Confidence 0126899999999999988 556677889999999999999986 223323 558999999999
Q ss_pred CCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHH
Q 013056 315 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFV 394 (450)
Q Consensus 315 ~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~ 394 (450)
+|.+.+..+ . ..+..+++|+.|++++|.++.. ++..+. ++|+.|++++|+|+. +|
T Consensus 383 ~N~l~~~l~--------~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~--~~L~~L~Ls~N~l~~------ip--- 437 (520)
T 2z7x_B 383 QNSVSYDEK--------K--GDCSWTKSLLSLNMSSNILTDT----IFRCLP--PRIKVLDLHSNKIKS------IP--- 437 (520)
T ss_dssp SSCCBCCGG--------G--CSCCCCTTCCEEECCSSCCCGG----GGGSCC--TTCCEEECCSSCCCC------CC---
T ss_pred CCcCCcccc--------c--chhccCccCCEEECcCCCCCcc----hhhhhc--ccCCEEECCCCcccc------cc---
Confidence 999986433 2 2344678999999999999863 443332 789999999999986 55
Q ss_pred hhcCCCCCcCEEEccCCCCChhHHHHHHHH-HhcCCCCCcEEECcCCCCCcccc
Q 013056 395 QASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 395 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
..+..+++|++|++++|+|+. ++.. +..+ .+|++|++++|++....+
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l-~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKS-----VPDGIFDRL-TSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-----CCTTTTTTC-TTCCEEECCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCCc-----cCHHHhccC-CcccEEECcCCCCcccCC
Confidence 445578999999999999987 4443 5564 449999999999987643
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.2e-19 Score=194.83 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=105.8
Q ss_pred chhhcccccCcchh------------------hhHhhh--cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccC
Q 013056 163 YARCLRLQNALCVE------------------ETCQLL--RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 222 (450)
Q Consensus 163 ~l~~l~L~~~~~~~------------------~~~~l~--~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~ 222 (450)
.++.|++++|.+.. +|..+. ++++|+.|+|++|.+...++.. +.++++|+.|+|++
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIAC 524 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTT
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECcC
Confidence 45666666666665 666655 7777888888777644333322 56777788888887
Q ss_pred CC-CCh-hHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHH--hhcCCCCCCEEecCCCCCChhHHHHHH
Q 013056 223 CK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVF 298 (450)
Q Consensus 223 n~-l~~-~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 298 (450)
|+ ++. ..+..+... ......+++|++|++++|.++. ++. .++.+++|++|+|++|.++ ..+ .
T Consensus 525 N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-- 590 (876)
T 4ecn_A 525 NRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLE-A-- 590 (876)
T ss_dssp CTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCC-C--
T ss_pred CCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cch-h--
Confidence 76 776 555555431 1011114577777777777764 223 5566777777777777776 333 2
Q ss_pred HHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc-eeEEEccCCCCChhhHHHHHHHhhcCC--CCCEEe
Q 013056 299 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS-LRLLNLRGNNLCKADARDLGSALVHIP--NLEILD 375 (450)
Q Consensus 299 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~ 375 (450)
+..+++|++|+|++|.+.. +| ..+. .+++ |+.|+|++|.++. +|..+...+ +|+.|+
T Consensus 591 ---~~~L~~L~~L~Ls~N~l~~-lp--------~~l~---~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 591 ---FGTNVKLTDLKLDYNQIEE-IP--------EDFC---AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp ---CCTTSEESEEECCSSCCSC-CC--------TTSC---EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEE
T ss_pred ---hcCCCcceEEECcCCcccc-ch--------HHHh---hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEE
Confidence 2445677777777777662 22 2222 3344 6666666665553 444443332 255555
Q ss_pred cCCCCCCh
Q 013056 376 ISDNTIED 383 (450)
Q Consensus 376 Ls~N~l~~ 383 (450)
|++|+++.
T Consensus 651 Ls~N~l~g 658 (876)
T 4ecn_A 651 FSYNKIGS 658 (876)
T ss_dssp CCSSCTTT
T ss_pred CcCCcCCC
Confidence 55555543
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=5.7e-19 Score=180.86 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=85.3
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHH-HHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+++++|.+..++.. .+++|++|++++|.+... .+.. +.++++|++|++++|.|+......
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~--------- 134 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE----FGNMSQLKFLGLSTTHLEKSSVLP--------- 134 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG----GGGCTTCCEEEEEESSCCGGGGGG---------
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhh----hccCCcceEEEecCcccchhhccc---------
Confidence 456677777777665555 677777777777775431 1111 456777778888777777522111
Q ss_pred cCCCCe--eEEEcCCCCC--CCCCc-------------------------------------------------hhhHHH
Q 013056 242 KRIHKI--ENLSIDISSF--IENCP-------------------------------------------------SSVVVE 268 (450)
Q Consensus 242 ~~~~~L--~~L~L~~n~i--~~~~~-------------------------------------------------~~~~~~ 268 (450)
+.+| ++|++++|.+ +.... ..+...
T Consensus 135 --l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 135 --IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp --GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred --cccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc
Confidence 3444 7777776665 21110 012223
Q ss_pred HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+ ..++.+++|++|++++|.+++..+..+..... .++|++|++++|.+++..
T Consensus 213 ~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 213 L-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp H-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEEEEEESCC
T ss_pred h-hhhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeecccccCcc
Confidence 3 36777888888888888887776666655432 357777777777766433
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=1.3e-19 Score=191.68 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=173.2
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+++++|.+..+.. .+..+++|+.|++++|.+...+.. ..+.++++|+.|++++|.++......+..
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 452 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFAL------ 452 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS---GGGTTCTTCCEEECCSCSEEECCTTTTTT------
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc---ccccCcccccEEecCCCCcceeChhhhhc------
Confidence 45566777777766543 445778888888888886432210 11567788889999888876544333332
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+++|+.|++++|.+...+ ..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 453 --~~~L~~L~l~~n~l~~~~------~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~-----~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 453 --VPSLQRLMLRRVALKNVD------SSPSPFQPLRNLTILDLSNNNIANINDDML-----EGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp --CTTCCEEECTTSCCBCTT------CSSCTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCGGG
T ss_pred --Ccccccchhccccccccc------cCCcccccCCCCCEEECCCCCCCcCChhhh-----ccccccCEEeCCCCCcccc
Confidence 688999999998876432 245567789999999999999987444333 4579999999999998752
Q ss_pred ccccCcccHHH-hhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCC
Q 013056 322 LSKYDRSGPLF-SLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASER 399 (450)
Q Consensus 322 ~~~~~~~~l~~-~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~ 399 (450)
.+ ..+|. ....+..+++|+.|+|++|+++. +|. .+..+++|+.|+|++|+++. +|. ..+..
T Consensus 520 ~~----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----i~~~~~~~l~~L~~L~Ls~N~l~~------l~~--~~~~~ 582 (680)
T 1ziw_A 520 WK----HANPGGPIYFLKGLSHLHILNLESNGFDE-----IPVEVFKDLFELKIIDLGLNNLNT------LPA--SVFNN 582 (680)
T ss_dssp GS----TTSTTSCCCTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTT
T ss_pred ch----hhccCCcchhhcCCCCCCEEECCCCCCCC-----CCHHHcccccCcceeECCCCCCCc------CCH--hHhCC
Confidence 11 00111 11124578999999999999996 554 57899999999999999987 442 55788
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 400 CNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 400 ~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+++|+.|+|++|.|+......+...+.. |+.|++++|++....+
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~----L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRN----LTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTT----CSEEECTTCCCCBCCC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccc----cCEEEccCCCcccCCc
Confidence 8999999999999998643333223333 9999999999987643
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=5e-19 Score=168.99 Aligned_cols=191 Identities=20% Similarity=0.239 Sum_probs=91.1
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 264 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~ 264 (450)
++|++|++++|.+.... . +..+++|+.|++++|.+++... +.. +++|++|++++|.+++.
T Consensus 41 ~~L~~L~l~~~~i~~l~-~-----~~~l~~L~~L~L~~n~i~~~~~--~~~--------l~~L~~L~L~~n~l~~~---- 100 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-G-----VQYLNNLIGLELKDNQITDLAP--LKN--------LTKITELELSGNPLKNV---- 100 (308)
T ss_dssp HTCCEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CCSCCEEECCSCCCSCC----
T ss_pred CCcCEEEeeCCCccCch-h-----hhccCCCCEEEccCCcCCCChh--Hcc--------CCCCCEEEccCCcCCCc----
Confidence 45555555555533311 1 3345555555555555554322 111 45555555555555441
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056 265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 344 (450)
Q Consensus 265 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 344 (450)
..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +. .+++|+
T Consensus 101 ------~~~~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~---------~~-l~---~l~~L~ 154 (308)
T 1h6u_A 101 ------SAIAGLQSIKTLDLTSTQITDVTP-------LAGLSNLQVLYLDLNQITNI---------SP-LA---GLTNLQ 154 (308)
T ss_dssp ------GGGTTCTTCCEEECTTSCCCCCGG-------GTTCTTCCEEECCSSCCCCC---------GG-GG---GCTTCC
T ss_pred ------hhhcCCCCCCEEECCCCCCCCchh-------hcCCCCCCEEECCCCccCcC---------cc-cc---CCCCcc
Confidence 124455555555555555544211 23345555555555555531 11 22 335555
Q ss_pred EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH
Q 013056 345 LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT 424 (450)
Q Consensus 345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 424 (450)
.|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++++|++++.. .
T Consensus 155 ~L~l~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l~~------~~----~l~~l~~L~~L~L~~N~l~~~~------~ 212 (308)
T 1h6u_A 155 YLSIGNAQVSD-----LTP-LANLSKLTTLKADDNKISD------IS----PLASLPNLIEVHLKNNQISDVS------P 212 (308)
T ss_dssp EEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCC------CG----GGGGCTTCCEEECTTSCCCBCG------G
T ss_pred EEEccCCcCCC-----Chh-hcCCCCCCEEECCCCccCc------Ch----hhcCCCCCCEEEccCCccCccc------c
Confidence 55555555554 222 4555555555555555554 21 1344455555555555555431 1
Q ss_pred HhcCCCCCcEEECcCCCCCc
Q 013056 425 LSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 425 l~~l~~~L~~L~L~~N~l~~ 444 (450)
+..+ .+|++|++++|++++
T Consensus 213 l~~l-~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 213 LANT-SNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTC-TTCCEEEEEEEEEEC
T ss_pred ccCC-CCCCEEEccCCeeec
Confidence 3332 235555555555543
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.1e-19 Score=172.10 Aligned_cols=209 Identities=17% Similarity=0.102 Sum_probs=123.9
Q ss_pred hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccC
Q 013056 164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243 (450)
Q Consensus 164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~ 243 (450)
++.++++++.+..++..+. ++++.|++++|.+....... +.++++|+.|+|++|.|+..... ..
T Consensus 12 l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----------~~ 75 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLAT----LMPYTRLTQLNLDRAELTKLQVD----------GT 75 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGG----GTTCTTCCEEECTTSCCCEEECC----------SC
T ss_pred ccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHH----hhcCCCCCEEECCCCccCcccCC----------CC
Confidence 3445555565555554443 56777777777754432221 45667777777777777643211 11
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+++|++|++++|.++. ++..+..+++|++|++++|+++...+..+ ..+++|++|+|++|.+++..+
T Consensus 76 l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLPLGAL-----RGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp CTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCCSSTT-----TTCTTCCEEECTTSCCCCCCT
T ss_pred CCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCcccCHHHH-----cCCCCCCEEECCCCCCCccCh
Confidence 5677777777777765 23345566777777777777765332222 346677777777777765322
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
..+..+++|+.|+|++|+|+. ++. .+..+++|++|+|++|+|+. +| ..+..+.+
T Consensus 142 -----------~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~------ip---~~~~~~~~ 196 (290)
T 1p9a_G 142 -----------GLLTPTPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT------IP---KGFFGSHL 196 (290)
T ss_dssp -----------TTTTTCTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC------CC---TTTTTTCC
T ss_pred -----------hhcccccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc------cC---hhhccccc
Confidence 223355677777777777765 443 34567777777777777765 44 34455567
Q ss_pred cCEEEccCCCCCh-hHHHHHHHHHhc
Q 013056 403 LVELYLENCELSG-RGVSQLLDTLST 427 (450)
Q Consensus 403 L~~L~L~~n~l~~-~g~~~l~~~l~~ 427 (450)
|+.|+|++|.+.. -+...+...+..
T Consensus 197 L~~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 197 LPFAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred CCeEEeCCCCccCcCccHHHHHHHHh
Confidence 7777777777653 222334445544
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-19 Score=184.54 Aligned_cols=215 Identities=19% Similarity=0.138 Sum_probs=166.8
Q ss_pred chhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.++++++.+..++. .+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.|++.. .
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~---------~-- 97 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL---------V-- 97 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE---------E--
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC---------C--
Confidence 56778888888877654 56688999999999998665433 568899999999999887422 1
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
.++|++|++++|.++.... ..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++.
T Consensus 98 --~~~L~~L~L~~N~l~~~~~-----------~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEE-----------CCCSSCEEEECCSSCCCSGGGBCG-----GGGSSEEEEECTTSCCCEE
T ss_pred --CCCcCEEECcCCcCCCCCc-----------cccCCCCEEECCCCCCCCCCchhh-----cCCCCCCEEECCCCCCCCc
Confidence 4789999999999987322 246889999999999988655443 3468999999999999875
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
.+ ..+. ..+++|+.|+|++|.|+. ++ ....+++|+.|+|++|.|++ +| ..+..++
T Consensus 160 ~~--------~~l~--~~l~~L~~L~Ls~N~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~------~~---~~~~~l~ 214 (487)
T 3oja_A 160 NF--------AELA--ASSDTLEHLNLQYNFIYD-----VK-GQVVFAKLKTLDLSSNKLAF------MG---PEFQSAA 214 (487)
T ss_dssp EG--------GGGG--GGTTTCCEEECTTSCCCE-----EE-CCCCCTTCCEEECCSSCCCE------EC---GGGGGGT
T ss_pred Ch--------HHHh--hhCCcccEEecCCCcccc-----cc-ccccCCCCCEEECCCCCCCC------CC---HhHcCCC
Confidence 44 3332 145889999999999987 32 24468999999999999987 43 3466779
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~ 443 (450)
+|+.|+|++|.|+. ++..+..+ .+|+.|++++|++.
T Consensus 215 ~L~~L~Ls~N~l~~-----lp~~l~~l-~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 215 GVTWISLRNNKLVL-----IEKALRFS-QNLEHFDLRGNGFH 250 (487)
T ss_dssp TCSEEECTTSCCCE-----ECTTCCCC-TTCCEEECTTCCBC
T ss_pred CccEEEecCCcCcc-----cchhhccC-CCCCEEEcCCCCCc
Confidence 99999999999997 56666664 45999999999998
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.3e-20 Score=186.84 Aligned_cols=212 Identities=17% Similarity=0.093 Sum_probs=168.4
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.|++++|.+...+. +..+++|++|+|++|.+... ...++|+.|++++|.|+.....
T Consensus 59 ~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---------~~~~~L~~L~L~~N~l~~~~~~----------- 117 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCS----------- 117 (487)
T ss_dssp TCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCCCEEEC-----------
T ss_pred CCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---------CCCCCcCEEECcCCcCCCCCcc-----------
Confidence 56778888888776554 67889999999999996542 2448999999999999864322
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
..++|+.|++++|.+++ ..+..++.+++|++|+|++|.+++..+..+. ..+++|++|+|++|.+++..
T Consensus 118 ~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 118 RGQGKKNIYLANNKITM--------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----ASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CCSSCEEEECCSSCCCS--------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----GGTTTCCEEECTTSCCCEEE
T ss_pred ccCCCCEEECCCCCCCC--------CCchhhcCCCCCCEEECCCCCCCCcChHHHh----hhCCcccEEecCCCcccccc
Confidence 15789999999999998 4555677899999999999999986665542 24799999999999998631
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
....+++|+.|+|++|.|+. +|+.+..+++|+.|+|++|.|+. +| ..+..+++
T Consensus 186 -------------~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~l~~l~~ 238 (487)
T 3oja_A 186 -------------GQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL------IE---KALRFSQN 238 (487)
T ss_dssp -------------CCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE------EC---TTCCCCTT
T ss_pred -------------ccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc------cc---hhhccCCC
Confidence 22246899999999999997 67778999999999999999997 55 56788899
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIA 438 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~ 438 (450)
|+.|++++|.++... ++..+..+ ..|+.++++
T Consensus 239 L~~L~l~~N~l~c~~---~~~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGT---LRDFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHH---HHHHHTTC-HHHHHHHHH
T ss_pred CCEEEcCCCCCcCcc---hHHHHHhC-CCCcEEecc
Confidence 999999999998432 44555553 236666664
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.1e-19 Score=168.26 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=128.7
Q ss_pred hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccC
Q 013056 164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 243 (450)
Q Consensus 164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~ 243 (450)
.+.++++++.+..+|..+. +++++|++++|.+...... .+.++++|++|++++|.|+......+..
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~-------- 83 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKE-------- 83 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSS--------
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcC--------
Confidence 3455666666665554432 5678888888875543221 1456778888888888776432222111
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+++|++|++++|.++.. ....+..+++|++|++++|.++...+..+ ..+++|++|+|++|.+++..+
T Consensus 84 l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQAL--------PIGVFDQLVNLAELRLDRNQLKSLPPRVF-----DSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CTTCCEEECCSSCCCCC--------CTTTTTTCSSCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCEEECCCCcCCcC--------CHhHcccccCCCEEECCCCccCeeCHHHh-----CcCcCCCEEECCCCcCCccCH
Confidence 57788888888877762 23345667788888888887766433322 446778888888887775332
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
..+..+++|+.|+|++|.++.. .+..+..+++|++|+|++|.++. +|. ..+..+++|
T Consensus 151 -----------~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L 207 (270)
T 2o6q_A 151 -----------GVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKR------VPE--GAFDSLEKL 207 (270)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTC
T ss_pred -----------hHccCCcccceeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCc------CCH--HHhccccCC
Confidence 2233567788888888877751 22346677788888888887765 331 346667778
Q ss_pred CEEEccCCCCCh
Q 013056 404 VELYLENCELSG 415 (450)
Q Consensus 404 ~~L~L~~n~l~~ 415 (450)
+.|+|++|.+..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 888888887644
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=5.5e-18 Score=171.23 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=40.8
Q ss_pred CCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHH
Q 013056 340 LQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVS 419 (450)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~ 419 (450)
+++|+.|++++|.+++. +. +..+++|+.|++++|.+++ + ..+..+++|+.|++++|++++.
T Consensus 308 l~~L~~L~L~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~------~----~~l~~l~~L~~L~l~~n~l~~~--- 368 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDI-----SP-VSSLTKLQRLFFYNNKVSD------V----SSLANLTNINWLSAGHNQISDL--- 368 (466)
T ss_dssp CTTCSEEECCSSCCSCC-----GG-GGGCTTCCEEECCSSCCCC------C----GGGTTCTTCCEEECCSSCCCBC---
T ss_pred CCCCCEEECcCCcCCCc-----hh-hccCccCCEeECCCCccCC------c----hhhccCCCCCEEeCCCCccCcc---
Confidence 34555555555555541 11 4455555555555555554 2 2244555556666666655553
Q ss_pred HHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 420 QLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 420 ~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
.+ +..+. +|++|++++|++++
T Consensus 369 -~~--~~~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 369 -TP--LANLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp -GG--GTTCT-TCCEEECCCEEEEC
T ss_pred -ch--hhcCC-CCCEEeccCCcccC
Confidence 11 33422 25666666655544
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=3.2e-20 Score=179.13 Aligned_cols=229 Identities=19% Similarity=0.135 Sum_probs=142.8
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.++++++.+..++..+. ++|++|++++|.+...... .+.++++|+.|++++|.++..+... ..+ .
T Consensus 103 ~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~--~~~----~ 170 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEP--GAF----D 170 (332)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSCCCBGGGSCT--TSS----C
T ss_pred CCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHh----HhCCCccCCEEECCCCccccCCCCc--ccc----c
Confidence 34455555555554444333 5566666666654332221 1345666666666666664311100 000 0
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
..+|++|++++|.++..... -.++|++|++++|.+++..+..+ ..+++|++|++++|.+++..
T Consensus 171 -~l~L~~L~l~~n~l~~l~~~-----------~~~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 171 -GLKLNYLRISEAKLTGIPKD-----------LPETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp -SCCCSCCBCCSSBCSSCCSS-----------SCSSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCC
T ss_pred -CCccCEEECcCCCCCccCcc-----------ccCCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCC
Confidence 11566666666666552211 12689999999999987554433 45799999999999998754
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
+ ..+. .+++|+.|+|++|+++. +|..+..+++|++|++++|+|++.+...+.+. ........
T Consensus 234 ~--------~~~~---~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~ 295 (332)
T 2ft3_A 234 N--------GSLS---FLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--GFGVKRAY 295 (332)
T ss_dssp T--------TGGG---GCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS--SCCSSSCC
T ss_pred h--------hHhh---CCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccc--cccccccc
Confidence 4 3444 56899999999999995 88889999999999999999988433322210 00011467
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 441 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~ 441 (450)
|+.|++++|.++..++ .+..+..+ ++|+.+++++|.
T Consensus 296 l~~L~l~~N~~~~~~~--~~~~~~~l-~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEV--QPATFRCV-TDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGS--CGGGGTTB-CCSTTEEC----
T ss_pred ccceEeecCccccccc--Cccccccc-chhhhhhccccc
Confidence 9999999999884322 23455553 449999999884
No 69
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.75 E-value=1.5e-17 Score=146.41 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056 266 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 344 (450)
Q Consensus 266 ~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 344 (450)
.+.+...+..+++|++|+|++| .+++.+...++.++.. .++|++|+|++|.+++ .+...++..+. ..++|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~----~g~~~l~~~L~---~n~~L~ 96 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSND----PVAFALAEMLK---VNNTLK 96 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCH----HHHHHHHHHHH---HCSSCC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCCh----HHHHHHHHHHH---hCCCcC
Confidence 3467777788888888888888 8888888888777644 3556666666665552 23333444444 224555
Q ss_pred EEEccCCCCChhhHHHHHHHhhcCCCCCEEec--CCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH
Q 013056 345 LLNLRGNNLCKADARDLGSALVHIPNLEILDI--SDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 417 (450)
Q Consensus 345 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L--s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g 417 (450)
+|+|++|.|+++|+..++.++..+++|++|+| ++|.|+++|+..++. .+..+++|++|+|++|.|++.|
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN----MLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH----HHHHCSSCCEEECCCSSHHHHH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH----HHHhCCCcCEEeccCCCCChHH
Confidence 56666666666665555555555555666666 555666655555542 2334455666666666555544
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.8e-19 Score=168.66 Aligned_cols=204 Identities=18% Similarity=0.158 Sum_probs=145.1
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchh
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 264 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~ 264 (450)
...+.++++++.+...... -.++++.|++++|.|+......+.. +++|++|++++|.++..
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-------~~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~i---- 76 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-------IPADTKKLDLQSNKLSSLPSKAFHR--------LTKLRLLYLNDNKLQTL---- 76 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-------CCTTCSEEECCSSCCSCCCTTSSSS--------CTTCCEEECCSSCCSCC----
T ss_pred CCCCEEEccCCCCCccCCC-------CCCCCCEEECcCCCCCeeCHHHhcC--------CCCCCEEECCCCccCee----
Confidence 3567888888876543221 1257899999999887544333322 68899999999988772
Q ss_pred hHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee
Q 013056 265 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 344 (450)
Q Consensus 265 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~ 344 (450)
....+..+++|++|++++|.++...+.. +..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 77 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~ 136 (270)
T 2o6q_A 77 ----PAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQLKSLPP-----------RVFDSLTKLT 136 (270)
T ss_dssp ----CTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSCCCCCCT-----------TTTTTCTTCC
T ss_pred ----ChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCccCeeCH-----------HHhCcCcCCC
Confidence 2334567889999999999887643322 2457889999999998886443 2234678899
Q ss_pred EEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHH
Q 013056 345 LLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 423 (450)
Q Consensus 345 ~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~ 423 (450)
+|+|++|.|+. ++. .+..+++|++|+|++|.++. ++. ..+..+++|++|+|++|.|+.. ...
T Consensus 137 ~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~ 199 (270)
T 2o6q_A 137 YLSLGYNELQS-----LPKGVFDKLTSLKELRLYNNQLKR------VPE--GAFDKLTELKTLKLDNNQLKRV----PEG 199 (270)
T ss_dssp EEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTT
T ss_pred EEECCCCcCCc-----cCHhHccCCcccceeEecCCcCcE------eCh--hHhccCCCcCEEECCCCcCCcC----CHH
Confidence 99999998886 333 46788899999999998877 331 4567788999999999988874 222
Q ss_pred HHhcCCCCCcEEECcCCCCCcc
Q 013056 424 TLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 424 ~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
.+..+ .+|+.|++++|++...
T Consensus 200 ~~~~l-~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 200 AFDSL-EKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTC-TTCCEEECCSSCBCCS
T ss_pred Hhccc-cCCCEEEecCCCeeCC
Confidence 34553 3489999999988654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=8.6e-20 Score=171.39 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=165.5
Q ss_pred cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
..++.++++++.+..++. .+.++++|++|++++|.+....... +.++++|+.|++++|.++...+..+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG----- 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT-----
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcC-----
Confidence 356778888888887766 5668899999999999865543322 568899999999999998765444433
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhH-HHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF-GRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+.+|++|++++|.++... ...+..+++|++|++++|.+++.. +..+ ..+++|++|++++|.++
T Consensus 99 ---l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 99 ---LSSLQKLVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ---CTTCCEEECTTSCCCCST--------TCCCTTCTTCCEEECCSSCCCCCCCCGGG-----GGCTTCCEEECCSSCCC
T ss_pred ---CccccEEECCCCCccccC--------chhcccCCCCCEEECcCCccceecCchhh-----ccCCCCCEEECCCCCCC
Confidence 689999999999998732 224678899999999999997632 3333 45799999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCcee-EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcC
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 398 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~ 398 (450)
+..+ ..+..+..++.|. .|++++|.++. ++.......+|++|+|++|.++. +|. ..+.
T Consensus 163 ~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~-----~~~~~~~~~~L~~L~L~~n~l~~------~~~--~~~~ 221 (276)
T 2z62_A 163 SIYC--------TDLRVLHQMPLLNLSLDLSLNPMNF-----IQPGAFKEIRLKELALDTNQLKS------VPD--GIFD 221 (276)
T ss_dssp EECG--------GGGHHHHTCTTCCEEEECCSSCCCE-----ECTTSSCSCCEEEEECCSSCCSC------CCT--TTTT
T ss_pred cCCH--------HHhhhhhhccccceeeecCCCcccc-----cCccccCCCcccEEECCCCceee------cCH--hHhc
Confidence 6433 3444333445555 89999999996 55555566699999999999987 432 4568
Q ss_pred CCCCcCEEEccCCCCChhH--HHHHHHHHhc
Q 013056 399 RCNPLVELYLENCELSGRG--VSQLLDTLST 427 (450)
Q Consensus 399 ~~~~L~~L~L~~n~l~~~g--~~~l~~~l~~ 427 (450)
.+++|++|++++|+++... ...+...+..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ccccccEEEccCCcccccCCchHHHHHHHHh
Confidence 8899999999999988643 2334455544
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=7.4e-20 Score=189.44 Aligned_cols=229 Identities=19% Similarity=0.158 Sum_probs=160.5
Q ss_pred hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhH--HHHHHHHHhccc
Q 013056 164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKR 241 (450)
Q Consensus 164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~ 241 (450)
++.+++.++.+..++. ..+++|+.|++++|....... ...+++|+.|++++|.++... +..+..
T Consensus 306 L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~------ 371 (570)
T 2z63_A 306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQSDFG------ 371 (570)
T ss_dssp CSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSCCBEEEEEEHHHHT------
T ss_pred ccEEeeccCcccccCc--ccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCccCccccccccccc------
Confidence 3444455554443332 245666666666666333222 146778888888888877543 233332
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
+++|++|++++|.++. ++..+..+++|++|++++|.+.+..+... +..+++|++|++++|.+.+.
T Consensus 372 --~~~L~~L~l~~n~l~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 372 --TTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp --CSCCCEEECCSCSEEE---------EEEEEETCTTCCEEECTTSEEESCTTSCT----TTTCTTCCEEECTTSCCEEC
T ss_pred --cCccCEEECCCCcccc---------ccccccccCCCCEEEccCCccccccchhh----hhcCCCCCEEeCcCCccccc
Confidence 6788888888888766 22236778899999999888766433111 24578899999999988764
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
.+ . .+..+++|+.|++++|.+++. .+|..+..+++|++|+|++|++++. .| ..+..++
T Consensus 437 ~~--------~---~~~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~-----~~---~~~~~l~ 494 (570)
T 2z63_A 437 FN--------G---IFNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL-----SP---TAFNSLS 494 (570)
T ss_dssp CT--------T---TTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE-----CT---TTTTTCT
T ss_pred ch--------h---hhhcCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC-----Ch---hhhhccc
Confidence 44 3 334678999999999998732 2677788999999999999999873 24 5678889
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
+|++|++++|.++.. .+..+..+ .+|++|++++|++++..|.
T Consensus 495 ~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSV----PDGIFDRL-TSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCC----CHHHhhcc-cCCcEEEecCCcccCCCcc
Confidence 999999999999885 33455664 4499999999999987663
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=4.5e-19 Score=183.45 Aligned_cols=127 Identities=17% Similarity=0.062 Sum_probs=97.7
Q ss_pred cchhhcccccCcchhhhH-hhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 162 HYARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~-~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
..++.+++++|.+..++. .+.++++|++|++++|.+....+.. +.++++|++|++++|.|+.....
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~lp~~--------- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQNISCC--------- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCCEECSC---------
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCCccCcc---------
Confidence 467888999999888774 5668999999999999976543332 57889999999999999842211
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCC--cEEeccCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL--SILDLSGNSI 318 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L--~~L~Ls~n~l 318 (450)
.+.+|++|++++|.++... .+..++++++|++|++++|.++...... +++| ++|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~~~~~--------l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQLDLLP--------VAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTTTTGG--------GTTSCEEEEEEEESSC
T ss_pred --ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccCchhh--------hhhceeeEEEeecccc
Confidence 2799999999999998732 2356788999999999999998643222 3444 7777777766
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=1.9e-18 Score=182.79 Aligned_cols=239 Identities=21% Similarity=0.114 Sum_probs=173.8
Q ss_pred cchhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 162 HYARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
..++.++++++.+..++.. +.++++|++|++++|.+....+.. +.++++|++|+|++|.++......+..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~----- 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF----- 95 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTTT-----
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhcc-----
Confidence 4677888888888776654 557899999999988865543332 567889999999999887544333332
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 320 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 320 (450)
+.+|++|++++|.++.. .+..++++++|++|++++|.+++..+..+ ..+++|++|++++|.+++
T Consensus 96 ---l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 96 ---CTNLTELHLMSNSIQKI--------KNNPFVKQKNLITLDLSHNGLSSTKLGTQ-----VQLENLQELLLSNNKIQA 159 (680)
T ss_dssp ---CTTCSEEECCSSCCCCC--------CSCTTTTCTTCCEEECCSSCCSCCCCCSS-----SCCTTCCEEECCSSCCCC
T ss_pred ---CCCCCEEECCCCccCcc--------ChhHccccCCCCEEECCCCcccccCchhh-----cccccCCEEEccCCcccc
Confidence 68899999999988772 23456788899999999998877544332 457889999999998886
Q ss_pred cccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCC
Q 013056 321 WLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERC 400 (450)
Q Consensus 321 ~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~ 400 (450)
..+ ..+... .+++|+.|++++|.++. ..+..+..+++|+.|++++|.++......+... + ..
T Consensus 160 ~~~--------~~~~~~-~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----l-~~ 221 (680)
T 1ziw_A 160 LKS--------EELDIF-ANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE----L-AN 221 (680)
T ss_dssp BCH--------HHHGGG-TTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH----H-TT
T ss_pred cCH--------HHhhcc-ccccccEEECCCCcccc----cChhhhhhhhhhhhhhccccccChhhHHHHHHH----h-hh
Confidence 433 333322 35789999999998886 245667788899999999998887666655432 2 23
Q ss_pred CCcCEEEccCCCCChhHHHHHHHHHhcCC-CCCcEEECcCCCCCcccc
Q 013056 401 NPLVELYLENCELSGRGVSQLLDTLSTLR-RPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 401 ~~L~~L~L~~n~l~~~g~~~l~~~l~~l~-~~L~~L~L~~N~l~~~~~ 447 (450)
++|+.|++++|.++.. .+..+..+. .+|++|++++|.+++..+
T Consensus 222 ~~L~~L~L~~n~l~~~----~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTT----SNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp SCCCEEECTTSCCCEE----CTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred ccccEEEccCCccccc----ChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 7899999999998875 233343322 349999999999987654
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=4.8e-18 Score=171.69 Aligned_cols=229 Identities=20% Similarity=0.228 Sum_probs=176.0
Q ss_pred hccccccceeccccc--------chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEE
Q 013056 148 CDYSKLSYHCQQFGH--------YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLE 219 (450)
Q Consensus 148 ~~l~~L~l~~~~~~~--------~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~ 219 (450)
.+++.|.++.+.+.. .++.+++.+... .. ..+.++++|++|++++|.+..... +..+++|+.|+
T Consensus 134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~ 205 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-DL-KPLANLTTLERLDISSNKVSDISV------LAKLTNLESLI 205 (466)
T ss_dssp TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-CC-GGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEE
T ss_pred CCCCEEECCCCccCCChhhccCCcccEeecCCccc-Cc-hhhccCCCCCEEECcCCcCCCChh------hccCCCCCEEE
Confidence 677777776653222 345555543322 22 236788999999999999655321 56889999999
Q ss_pred ccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHH
Q 013056 220 FLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS 299 (450)
Q Consensus 220 Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 299 (450)
+++|.+++..+ + .. +++|++|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 206 l~~n~l~~~~~--~----~~----l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l~~~~~----- 260 (466)
T 1o6v_A 206 ATNNQISDITP--L----GI----LTNLDELSLNGNQLKDI----------GTLASLTNLTDLDLANNQISNLAP----- 260 (466)
T ss_dssp CCSSCCCCCGG--G----GG----CTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGG-----
T ss_pred ecCCccccccc--c----cc----cCCCCEEECCCCCcccc----------hhhhcCCCCCEEECCCCccccchh-----
Confidence 99999986543 1 11 68999999999999872 246788999999999999987543
Q ss_pred HHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056 300 SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDN 379 (450)
Q Consensus 300 ~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 379 (450)
+..+++|++|++++|.+++. +. +. .+++|+.|++++|.+++ ++. +..+++|+.|++++|
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~---------~~-~~---~l~~L~~L~L~~n~l~~-----~~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNI---------SP-LA---GLTALTNLELNENQLED-----ISP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCC---------GG-GT---TCTTCSEEECCSSCCSC-----CGG-GGGCTTCSEEECCSS
T ss_pred --hhcCCCCCEEECCCCccCcc---------cc-cc---CCCccCeEEcCCCcccC-----chh-hcCCCCCCEEECcCC
Confidence 35589999999999999862 12 33 67899999999999987 333 789999999999999
Q ss_pred CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 380 TIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 380 ~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
.+++. + .+..+++|++|++++|.+++. ..+..+ .+|+.|++++|++++..|
T Consensus 320 ~l~~~------~----~~~~l~~L~~L~l~~n~l~~~------~~l~~l-~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 320 NISDI------S----PVSSLTKLQRLFFYNNKVSDV------SSLANL-TNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCSCC------G----GGGGCTTCCEEECCSSCCCCC------GGGTTC-TTCCEEECCSSCCCBCGG
T ss_pred cCCCc------h----hhccCccCCEeECCCCccCCc------hhhccC-CCCCEEeCCCCccCccch
Confidence 99883 2 256779999999999999984 356664 449999999999998765
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2.1e-17 Score=171.92 Aligned_cols=222 Identities=17% Similarity=0.152 Sum_probs=149.1
Q ss_pred hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCC-------
Q 013056 182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI------- 254 (450)
Q Consensus 182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~------- 254 (450)
..+++|++|++++|.+.... ...+..++++|+.|++++| +++.+...+... +++|++|++..
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~-------~~~L~~L~L~~~~~~g~~ 354 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST-------CKDLRELRVFPSEPFVME 354 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH-------CTTCCEEEEECSCTTCSS
T ss_pred HhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh-------CCCCCEEEEecCcccccc
Confidence 35688888888888844321 3334567888899988888 666666666554 67888888833
Q ss_pred --CCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEecc--C----CCCCCcccccC
Q 013056 255 --SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKYD 326 (450)
Q Consensus 255 --n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~----n~l~~~~~~~~ 326 (450)
+.+++ ..+......+++|++|.++.|.+++.++..++.. +++|++|+++ + +.+++...
T Consensus 355 ~~~~l~~-------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~--- 420 (594)
T 2p1m_B 355 PNVALTE-------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDYLTLEPL--- 420 (594)
T ss_dssp CSSCCCH-------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCTTTCCCT---
T ss_pred cCCCCCH-------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCcceeEeecccCCCcccccCCch---
Confidence 34444 1233333457888888888888888777666543 6888899888 3 34442100
Q ss_pred cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 406 (450)
Q Consensus 327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L 406 (450)
...++..+. .+++|+.|+|++ .+++.++..+.. .+++|+.|+|++|.+++.|+..++. .+++|++|
T Consensus 421 ~~~~~~l~~---~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~-------~~~~L~~L 486 (594)
T 2p1m_B 421 DIGFGAIVE---HCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS-------GCDSLRKL 486 (594)
T ss_dssp HHHHHHHHH---HCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH-------HCTTCCEE
T ss_pred hhHHHHHHh---hCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh-------cCCCcCEE
Confidence 011223333 457888888876 788766554433 4778888888888888887776642 24788888
Q ss_pred EccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 407 YLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 407 ~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
+|++|.+++.++..+...+.. |++|++++|++++.+
T Consensus 487 ~L~~n~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKLET----MRSLWMSSCSVSFGA 522 (594)
T ss_dssp EEESCSCCHHHHHHTGGGGGG----SSEEEEESSCCBHHH
T ss_pred ECcCCCCcHHHHHHHHHhCCC----CCEEeeeCCCCCHHH
Confidence 888888887766655544433 888888888886543
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=4.2e-18 Score=171.39 Aligned_cols=184 Identities=19% Similarity=0.099 Sum_probs=105.9
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.++++++.+..++ +..+++|++|++++|.+... + +.++++|++|++++|.++... + .
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~l~---~----~---- 124 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTKLD---V----S---- 124 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSCCC---C----T----
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCeec---C----C----
Confidence 4455555555555442 44556666666666664432 1 345666666666666665421 1 1
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
.+++|++|++++|.+++. .++.+++|++|++++|...+... +..+++|++|++++|.+++
T Consensus 125 ~l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp TCTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCCC-------CTTCTTCCEEECCSSCCCC--
T ss_pred CCCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCcccccc-------cccCCcCCEEECCCCccce--
Confidence 146666666666666552 14456666666666663222121 1335666777777666664
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
++ +..+++|+.|++++|.++. + .+..+++|+.|++++|++++ +| +..+++
T Consensus 185 -------l~-----l~~l~~L~~L~l~~N~l~~-----~--~l~~l~~L~~L~Ls~N~l~~------ip-----~~~l~~ 234 (457)
T 3bz5_A 185 -------LD-----VSQNKLLNRLNCDTNNITK-----L--DLNQNIQLTFLDCSSNKLTE------ID-----VTPLTQ 234 (457)
T ss_dssp -------CC-----CTTCTTCCEEECCSSCCSC-----C--CCTTCTTCSEEECCSSCCSC------CC-----CTTCTT
T ss_pred -------ec-----cccCCCCCEEECcCCcCCe-----e--ccccCCCCCEEECcCCcccc------cC-----ccccCC
Confidence 11 2245667777777777765 2 25666777777777777765 33 455677
Q ss_pred cCEEEccCCCCChh
Q 013056 403 LVELYLENCELSGR 416 (450)
Q Consensus 403 L~~L~L~~n~l~~~ 416 (450)
|++|++++|.++..
T Consensus 235 L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 235 LTYFDCSVNPLTEL 248 (457)
T ss_dssp CSEEECCSSCCSCC
T ss_pred CCEEEeeCCcCCCc
Confidence 77777777776663
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3.6e-18 Score=163.02 Aligned_cols=190 Identities=17% Similarity=0.199 Sum_probs=152.8
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.+++.++.+..++ .+..+++|++|++++|.+..... +..+++|+.|++++|.+++.. . +..
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~--~----~~~--- 105 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS--A----IAG--- 105 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG--G----GTT---
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch--h----hcC---
Confidence 4556677777766654 56788999999999999665433 578899999999999998642 2 222
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 106 -l~~L~~L~l~~n~l~~~---------~-~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~- 166 (308)
T 1h6u_A 106 -LQSIKTLDLTSTQITDV---------T-PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQVSDL- 166 (308)
T ss_dssp -CTTCCEEECTTSCCCCC---------G-GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-
T ss_pred -CCCCCEEECCCCCCCCc---------h-hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcCCCC-
Confidence 68999999999999872 1 27889999999999999987433 34589999999999999862
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
+. + ..+++|+.|++++|.+++ ++. +..+++|++|+|++|++++ .+ .+..+++
T Consensus 167 --------~~-l---~~l~~L~~L~l~~n~l~~-----~~~-l~~l~~L~~L~L~~N~l~~------~~----~l~~l~~ 218 (308)
T 1h6u_A 167 --------TP-L---ANLSKLTTLKADDNKISD-----ISP-LASLPNLIEVHLKNNQISD------VS----PLANTSN 218 (308)
T ss_dssp --------GG-G---TTCTTCCEEECCSSCCCC-----CGG-GGGCTTCCEEECTTSCCCB------CG----GGTTCTT
T ss_pred --------hh-h---cCCCCCCEEECCCCccCc-----Chh-hcCCCCCCEEEccCCccCc------cc----cccCCCC
Confidence 22 3 367999999999999987 343 7899999999999999998 32 3678899
Q ss_pred cCEEEccCCCCCh
Q 013056 403 LVELYLENCELSG 415 (450)
Q Consensus 403 L~~L~L~~n~l~~ 415 (450)
|++|++++|.++.
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999999876
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=5.9e-18 Score=174.41 Aligned_cols=206 Identities=15% Similarity=0.182 Sum_probs=141.1
Q ss_pred CCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCch
Q 013056 184 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 263 (450)
Q Consensus 184 ~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~ 263 (450)
..+|+.|++++|.+...... ++.++++|+.|++++|.+++..+.... .+. .+++|++|++++|.++..
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~----~l~~L~~L~Ls~N~l~~~--- 376 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSA-CKG----AWPSLQTLVLSQNHLRSM--- 376 (549)
T ss_dssp STTCCEEEEESSCCCCCCHH----HHHHCTTCCEEECCSSCCCHHHHHHHT-CTT----SSTTCCEEECTTSCCCCH---
T ss_pred cccceEEEeccCccccCCHH----HHhcCccccEEEccCCccccccccchh-hhh----ccccCcEEEccCCccccc---
Confidence 35677777777775433222 245677888888888888865543211 011 157788888888888761
Q ss_pred hhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCce
Q 013056 264 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 343 (450)
Q Consensus 264 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L 343 (450)
......+..+++|++|++++|+++. .+..+ ..+++|++|++++|.+++. +..+. ++|
T Consensus 377 ---~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~-----~~~~~L~~L~Ls~N~l~~l---------~~~~~-----~~L 433 (549)
T 2z81_A 377 ---QKTGEILLTLKNLTSLDISRNTFHP-MPDSC-----QWPEKMRFLNLSSTGIRVV---------KTCIP-----QTL 433 (549)
T ss_dssp ---HHHHHHGGGCTTCCEEECTTCCCCC-CCSCC-----CCCTTCCEEECTTSCCSCC---------CTTSC-----TTC
T ss_pred ---ccchhhhhcCCCCCEEECCCCCCcc-CChhh-----cccccccEEECCCCCcccc---------cchhc-----CCc
Confidence 0123457778888888888888774 33322 3467888888888887641 12221 578
Q ss_pred eEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHH
Q 013056 344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLD 423 (450)
Q Consensus 344 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~ 423 (450)
++|+|++|+|+. + ...+++|++|+|++|+|+. +|. ...+++|++|+|++|+|+.. .+.
T Consensus 434 ~~L~Ls~N~l~~-----~---~~~l~~L~~L~Ls~N~l~~------ip~----~~~l~~L~~L~Ls~N~l~~~----~~~ 491 (549)
T 2z81_A 434 EVLDVSNNNLDS-----F---SLFLPRLQELYISRNKLKT------LPD----ASLFPVLLVMKISRNQLKSV----PDG 491 (549)
T ss_dssp SEEECCSSCCSC-----C---CCCCTTCCEEECCSSCCSS------CCC----GGGCTTCCEEECCSSCCCCC----CTT
T ss_pred eEEECCCCChhh-----h---cccCChhcEEECCCCccCc------CCC----cccCccCCEEecCCCccCCc----CHH
Confidence 888888888886 2 2578899999999999885 542 34568999999999998874 344
Q ss_pred HHhcCCCCCcEEECcCCCCCcccc
Q 013056 424 TLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 424 ~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
.+..+ .+|++|++++|++.+..+
T Consensus 492 ~~~~l-~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 492 IFDRL-TSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGGC-TTCCEEECCSSCBCCCHH
T ss_pred HHhcC-cccCEEEecCCCccCCCc
Confidence 56664 349999999999887665
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.2e-18 Score=164.72 Aligned_cols=204 Identities=17% Similarity=0.138 Sum_probs=149.0
Q ss_pred hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCC
Q 013056 181 LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 260 (450)
Q Consensus 181 l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~ 260 (450)
+.+++++++++++++.+...... -.++++.|+|++|.|+...+..+.. +.+|++|++++|.++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-------~~~~l~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-------LPKDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-------CCTTCCEEECTTSCCSEEEGGGGTT--------CTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCC-------CCCCCCEEEcCCCcCCccCHHHhhc--------CCCCCEEECCCCccCcc
Confidence 34567889999988886543321 1257899999999888655444433 68899999999988762
Q ss_pred CchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCC
Q 013056 261 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 340 (450)
Q Consensus 261 ~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l 340 (450)
.. .+.+++|++|++++|.++. .+.. +..+++|++|++++|.+++..+ ..+..+
T Consensus 71 ~~----------~~~l~~L~~L~Ls~N~l~~-l~~~-----~~~l~~L~~L~l~~N~l~~l~~-----------~~~~~l 123 (290)
T 1p9a_G 71 QV----------DGTLPVLGTLDLSHNQLQS-LPLL-----GQTLPALTVLDVSFNRLTSLPL-----------GALRGL 123 (290)
T ss_dssp EC----------CSCCTTCCEEECCSSCCSS-CCCC-----TTTCTTCCEEECCSSCCCCCCS-----------STTTTC
T ss_pred cC----------CCCCCcCCEEECCCCcCCc-Cchh-----hccCCCCCEEECCCCcCcccCH-----------HHHcCC
Confidence 21 1567889999999998874 3332 2447889999999998886443 334467
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 420 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 420 (450)
++|+.|+|++|+|+. ..+..+..+++|+.|+|++|+|+. +|. ..+..+++|++|+|++|+|+.
T Consensus 124 ~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~l~~----- 186 (290)
T 1p9a_G 124 GELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANNNLTE------LPA--GLLNGLENLDTLLLQENSLYT----- 186 (290)
T ss_dssp TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCSC------CCT--TTTTTCTTCCEEECCSSCCCC-----
T ss_pred CCCCEEECCCCCCCc----cChhhcccccCCCEEECCCCcCCc------cCH--HHhcCcCCCCEEECCCCcCCc-----
Confidence 889999999998886 223346788899999999999886 442 456778899999999999886
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCc
Q 013056 421 LLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 421 l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
++..+... .+|+.|+|++|++..
T Consensus 187 ip~~~~~~-~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 187 IPKGFFGS-HLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTT-CCCSEEECCSCCBCC
T ss_pred cChhhccc-ccCCeEEeCCCCccC
Confidence 56666663 459999999998864
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=4e-18 Score=159.68 Aligned_cols=184 Identities=19% Similarity=0.197 Sum_probs=145.0
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056 211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 290 (450)
Q Consensus 211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 290 (450)
.+++|+.|++++|.++... . +.. +++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~--~----l~~----l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ--G----IQY----LPNVRYLALGGNKLHDI----------SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT--T----GGG----CTTCCEEECTTSCCCCC----------GGGTTCTTCCEEECTTSCCC
T ss_pred cccceeeeeeCCCCccccc--c----ccc----CCCCcEEECCCCCCCCc----------hhhcCCCCCCEEECCCCccC
Confidence 4578999999999887532 1 222 68999999999999872 25778999999999999998
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
+..+..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.++. ..+..+..+++
T Consensus 99 ~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~ 158 (272)
T 3rfs_A 99 SLPNGVF-----DKLTNLKELVLVENQLQSLPD-----------GVFDKLTNLTYLNLAHNQLQS----LPKGVFDKLTN 158 (272)
T ss_dssp CCCTTTT-----TTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTT
T ss_pred ccChhHh-----cCCcCCCEEECCCCcCCccCH-----------HHhccCCCCCEEECCCCccCc----cCHHHhccCcc
Confidence 7444322 457999999999999987444 223467899999999999986 22344688999
Q ss_pred CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
|++|++++|++++ ++. ..+..+++|++|++++|.++.. .+..+..+ .+|++|++++|++.+..|
T Consensus 159 L~~L~l~~n~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 159 LTELDLSYNQLQS------LPE--GVFDKLTQLKDLRLYQNQLKSV----PDGVFDRL-TSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCCcCc------cCH--HHhcCCccCCEEECCCCcCCcc----CHHHHhCC-cCCCEEEccCCCccccCc
Confidence 9999999999987 331 4578889999999999999874 33445664 459999999999987765
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=5.2e-19 Score=191.56 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=66.9
Q ss_pred CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHH
Q 013056 341 QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQ 420 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 420 (450)
++|+.|++++|.++. ..+..+..+++|+.|+|++|.++.. .+ ..+..+++|++|+|++|.++..
T Consensus 266 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~-----~~---~~~~~l~~L~~L~Ls~N~l~~~---- 329 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYNKINKI-----AD---EAFYGLDNLQVLNLSYNLLGEL---- 329 (844)
T ss_dssp SCCCEEECTTCCCCE----ECSCCSSSCCCCCEEEEESCCCCEE-----CT---TTTTTCSSCCEEEEESCCCSCC----
T ss_pred CCccEEECCCCcccc----cChhhhhcCCCCCEEECCCCcCCCC-----Ch---HHhcCCCCCCEEECCCCCCCcc----
Confidence 578888888888876 2355677888889999988888763 23 5577788899999999988764
Q ss_pred HHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 421 LLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 421 l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
.+..+..+. +|++|++++|.|++..+
T Consensus 330 ~~~~~~~l~-~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 330 YSSNFYGLP-KVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CSCSCSSCT-TCCEEECCSCCCCCCCS
T ss_pred CHHHhcCCC-CCCEEECCCCCCCccCh
Confidence 344556643 48999999998876543
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=1.3e-18 Score=179.32 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=179.4
Q ss_pred cchhhcccccCcchhhh-HhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcc
Q 013056 162 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~-~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
..++.++++++.+..++ ..+.++++|++|++++|.+....+.. +.++++|++|++++|.+++..+..+..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHLDLSDNHLSSLSSSWFGP----- 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCSCCHHHHTT-----
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh----ccccccCCEEECCCCccCccCHHHhcc-----
Confidence 46677888888877664 45668899999999999966544322 578899999999999999877666654
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH-HHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+.+|++|++++|.++... .+..++.+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.++
T Consensus 97 ---l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 97 ---LSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF-----AGLTSLNELEIKALSLR 161 (549)
T ss_dssp ---CTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCC
T ss_pred ---CCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhhh-----hcccccCeeeccCCccc
Confidence 789999999999988632 22356788999999999998433233 222 45799999999999998
Q ss_pred CcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHh-hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcC
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL-VHIPNLEILDISDNTIEDDGIRSLIPYFVQASE 398 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~ 398 (450)
+..+ ..++ .+++|++|+++.|.++. ++..+ ..+++|++|++++|++++.... +. ....
T Consensus 162 ~~~~--------~~l~---~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~--~~~~ 220 (549)
T 2z81_A 162 NYQS--------QSLK---SIRDIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFS---PL--PVDE 220 (549)
T ss_dssp EECT--------TTTT---TCSEEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCC---CC--SSCC
T ss_pred ccCh--------hhhh---ccccCceEecccCcccc-----cchhhHhhcccccEEEccCCcccccccc---cc--chhh
Confidence 7555 3444 67899999999999875 55544 5789999999999999762100 00 1234
Q ss_pred CCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 399 RCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 399 ~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
.+++|+.|++++|.+++.+...+...+..+ .+|+.+++++|.+.+
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~-~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNG 265 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGC-TTCCEEEEESCEEEC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhh-ccccccccccccccc
Confidence 568999999999999998888887777764 448999998887654
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=4.6e-18 Score=176.66 Aligned_cols=209 Identities=19% Similarity=0.147 Sum_probs=134.2
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.|++++|.+..++. .+++|++|++++|.+..... .+++|+.|++++|+|+... ..
T Consensus 82 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~lp---------~~-- 139 (622)
T 3g06_A 82 ELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLP---------VL-- 139 (622)
T ss_dssp TCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCCC---------CC--
T ss_pred CCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcCC---------CC--
Confidence 55667777777665554 55777777777777544211 4467777777777776311 11
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
.++|++|++++|.++.... ..++|+.|++++|.++. .+ ..+++|+.|++++|.+++..
T Consensus 140 -l~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N~l~~-l~--------~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 140 -PPGLQELSVSDNQLASLPA------------LPSELCKLWAYNNQLTS-LP--------MLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp -CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSC-CC--------CCCTTCCEEECCSSCCSCCC
T ss_pred -CCCCCEEECcCCcCCCcCC------------ccCCCCEEECCCCCCCC-Cc--------ccCCCCcEEECCCCCCCCCC
Confidence 4678888888887766321 12445555555555544 11 11355666666666555311
Q ss_pred cccCcccHHHhhh----------CC-CCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHH
Q 013056 323 SKYDRSGPLFSLG----------AG-KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIP 391 (450)
Q Consensus 323 ~~~~~~~l~~~l~----------~~-~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~ 391 (450)
. .+..+. .+ ..+++|+.|+|++|.|+. +| ..+++|+.|+|++|.|+. +|
T Consensus 198 ~------~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N~L~~------lp 257 (622)
T 3g06_A 198 T------LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGNRLTS------LP 257 (622)
T ss_dssp C------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC------CC
T ss_pred C------ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCCCCCc------CC
Confidence 0 000000 00 123678999999998886 55 566889999999999986 54
Q ss_pred HHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 392 YFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 392 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
. .+++|++|+|++|.|+. ++..+..+. +|+.|+|++|+|++..+
T Consensus 258 ---~---~~~~L~~L~Ls~N~L~~-----lp~~l~~l~-~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 258 ---M---LPSGLLSLSVYRNQLTR-----LPESLIHLS-SETTVNLEGNPLSERTL 301 (622)
T ss_dssp ---C---CCTTCCEEECCSSCCCS-----CCGGGGGSC-TTCEEECCSCCCCHHHH
T ss_pred ---c---ccccCcEEeCCCCCCCc-----CCHHHhhcc-ccCEEEecCCCCCCcCH
Confidence 2 45899999999999996 677788854 49999999999987655
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=3.8e-18 Score=157.89 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=137.1
Q ss_pred CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhh
Q 013056 186 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 265 (450)
Q Consensus 186 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 265 (450)
..++++++++.+...... -.++++.|+|++|.++......+.. +++|++|++++|.++.
T Consensus 15 ~~~~l~~~~~~l~~~p~~-------~~~~l~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~------ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-------IPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQT------ 73 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-------CCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCC------
T ss_pred CCeEEecCCCCccccCCC-------CCCCCCEEEccCCCcCccCHhHhcC--------cccCCEEECCCCcCCc------
Confidence 456677777665443221 1246888888888877654443332 5788888888888877
Q ss_pred HHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056 266 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 345 (450)
Q Consensus 266 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 345 (450)
..+..+..+++|++|+|++|.+++..+.. +..+++|++|+|++|.+++..+ ..+..+++|+.
T Consensus 74 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~ 135 (251)
T 3m19_A 74 --LSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPS-----------GVFDRLTKLKE 135 (251)
T ss_dssp --CCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCE
T ss_pred --cCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcCh-----------hHhccCCcccE
Confidence 33445677889999999999887643332 2457899999999998886433 22346788999
Q ss_pred EEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--HHHHHH
Q 013056 346 LNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLL 422 (450)
Q Consensus 346 L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~ 422 (450)
|+|++|+|+. ++. .+..+++|++|+|++|+++. ++. ..+..+++|++|+|++|.++.. ....+.
T Consensus 136 L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~ 202 (251)
T 3m19_A 136 LRLNTNQLQS-----IPAGAFDKLTNLQTLSLSTNQLQS------VPH--GAFDRLGKLQTITLFGNQFDCSRCEILYLS 202 (251)
T ss_dssp EECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred EECcCCcCCc-----cCHHHcCcCcCCCEEECCCCcCCc------cCH--HHHhCCCCCCEEEeeCCceeCCccccHHHH
Confidence 9999999986 444 57888999999999999886 331 4577788999999999998764 344455
Q ss_pred HHHhcCCCCCcEEECcCCCCCc
Q 013056 423 DTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 423 ~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
..+.. +. .+..+..++.+.+
T Consensus 203 ~~~~~-~~-~~~~~~~~~~~~~ 222 (251)
T 3m19_A 203 QWIRE-NS-NKVKDGTGQNLHE 222 (251)
T ss_dssp HHHHH-SG-GGBCC-------C
T ss_pred HHHHh-cc-cceeeccCccccc
Confidence 55554 22 3334444554433
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=6.7e-18 Score=174.65 Aligned_cols=181 Identities=22% Similarity=0.238 Sum_probs=137.5
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056 213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 292 (450)
Q Consensus 213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 292 (450)
.+|+.|++++|.+..... ...+++|++|++++|.+++ ..+..+..+++|++|++++|++++.
T Consensus 331 ~~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC----------PPSPSSFTFLNFTQNVFTD--------SVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp CCCSEEEEESSCCCCCCC----------CSSCCCCCEEECCSSCCCT--------TTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred CcceEEEccCCCcccccC----------ccCCCCceEEECCCCcccc--------chhhhhcccCCCCEEECCCCCcCCc
Confidence 578888888887764221 0126889999999999988 5566778899999999999999862
Q ss_pred --HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 293 --FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 293 --~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
.+.. +..+++|++|++++|.+++..+ . ..+..+++|+.|++++|.++.. ++..+. ++
T Consensus 393 ~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~--------~--~~~~~l~~L~~L~l~~n~l~~~----~~~~l~--~~ 451 (562)
T 3a79_B 393 FKVALM-----TKNMSSLETLDVSLNSLNSHAY--------D--RTCAWAESILVLNLSSNMLTGS----VFRCLP--PK 451 (562)
T ss_dssp THHHHT-----TTTCTTCCEEECTTSCCBSCCS--------S--CCCCCCTTCCEEECCSSCCCGG----GGSSCC--TT
T ss_pred ccchhh-----hcCCCCCCEEECCCCcCCCccC--------h--hhhcCcccCCEEECCCCCCCcc----hhhhhc--Cc
Confidence 2222 3557999999999999886333 1 2344678999999999999862 333322 68
Q ss_pred CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHH-HhcCCCCCcEEECcCCCCCcccc
Q 013056 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDT-LSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
|+.|+|++|+|+. +| ..+..+++|++|+|++|+|+. ++.. +..+ .+|++|++++|++.+..+
T Consensus 452 L~~L~L~~N~l~~------ip---~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l-~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 452 VKVLDLHNNRIMS------IP---KDVTHLQALQELNVASNQLKS-----VPDGVFDRL-TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCCC------CC---TTTTSSCCCSEEECCSSCCCC-----CCTTSTTTC-TTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCcCcc------cC---hhhcCCCCCCEEECCCCCCCC-----CCHHHHhcC-CCCCEEEecCCCcCCCcc
Confidence 9999999999986 55 445588999999999999997 4444 6664 449999999999987543
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=1.3e-17 Score=167.92 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=108.0
Q ss_pred hccccccceecccc-----c--chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEc
Q 013056 148 CDYSKLSYHCQQFG-----H--YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF 220 (450)
Q Consensus 148 ~~l~~L~l~~~~~~-----~--~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~L 220 (450)
.+++.|+++...+. . .++.+++++|.+..++ +.++++|++|++++|.+... + +..+++|+.|++
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l-~------~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL-D------VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC-C------CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee-c------CCCCCcCCEEEC
Confidence 55555555544221 1 4566667777666543 55667777777777775442 1 456677777777
Q ss_pred cCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHH
Q 013056 221 LHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 300 (450)
Q Consensus 221 s~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 300 (450)
++|.++... + ..+++|++|++++|...+ .+ .+..+++|++|++++|++++. +
T Consensus 135 ~~N~l~~l~---l--------~~l~~L~~L~l~~n~~~~--------~~--~~~~l~~L~~L~ls~n~l~~l-~------ 186 (457)
T 3bz5_A 135 ARNTLTEID---V--------SHNTQLTELDCHLNKKIT--------KL--DVTPQTQLTTLDCSFNKITEL-D------ 186 (457)
T ss_dssp TTSCCSCCC---C--------TTCTTCCEEECTTCSCCC--------CC--CCTTCTTCCEEECCSSCCCCC-C------
T ss_pred CCCccceec---c--------ccCCcCCEEECCCCCccc--------cc--ccccCCcCCEEECCCCcccee-c------
Confidence 777776531 1 115677777777774333 11 244567777777777777662 1
Q ss_pred HhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC
Q 013056 301 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT 380 (450)
Q Consensus 301 L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 380 (450)
+..+++|+.|++++|.+++. .+..+++|+.|++++|+++. +| +..+++|+.|++++|+
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSC
T ss_pred -cccCCCCCEEECcCCcCCee--------------ccccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCCc
Confidence 23456777777777777651 12355677777777777775 44 6667777777777777
Q ss_pred CCh
Q 013056 381 IED 383 (450)
Q Consensus 381 l~~ 383 (450)
+++
T Consensus 245 l~~ 247 (457)
T 3bz5_A 245 LTE 247 (457)
T ss_dssp CSC
T ss_pred CCC
Confidence 765
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=7.3e-19 Score=190.39 Aligned_cols=63 Identities=14% Similarity=-0.013 Sum_probs=30.5
Q ss_pred chhhcccccCcchh-hhHh--hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChh
Q 013056 163 YARCLRLQNALCVE-ETCQ--LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPS 228 (450)
Q Consensus 163 ~l~~l~L~~~~~~~-~~~~--l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 228 (450)
.++.|++++|.+.. .+.. +.++++|++|+|++|.+..... ...+.++++|+.|++++|.++..
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESSCCCCC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCCcCCee
Confidence 34455555555543 1222 3455666666666665432211 00134556666666666655543
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=5.8e-18 Score=156.66 Aligned_cols=180 Identities=20% Similarity=0.210 Sum_probs=141.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056 213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 292 (450)
Q Consensus 213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 292 (450)
...++++++++.++.... .+ ..+++.|++++|.++. ..+..+.++++|++|+|++|.+++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~----------~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GI----------PADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CC----------CTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCeEEecCCCCccccCC-CC----------CCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCcc
Confidence 357889999998873221 11 3679999999999988 3345677899999999999999885
Q ss_pred HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCC
Q 013056 293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNL 371 (450)
Q Consensus 293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L 371 (450)
.+..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.|+. ++. .+..+++|
T Consensus 75 ~~~~~-----~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L 133 (251)
T 3m19_A 75 SAGVF-----DDLTELGTLGLANNQLASLPL-----------GVFDHLTQLDKLYLGGNQLKS-----LPSGVFDRLTKL 133 (251)
T ss_dssp CTTTT-----TTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTC
T ss_pred CHhHh-----ccCCcCCEEECCCCcccccCh-----------hHhcccCCCCEEEcCCCcCCC-----cChhHhccCCcc
Confidence 44333 457999999999999987443 333467999999999999996 444 46789999
Q ss_pred CEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 372 EILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 372 ~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
++|+|++|+|+. ++. ..+..+++|++|+|++|.|+.. .+..+..+ .+|++|++++|++...
T Consensus 134 ~~L~Ls~N~l~~------~~~--~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 134 KELRLNTNQLQS------IPA--GAFDKLTNLQTLSLSTNQLQSV----PHGAFDRL-GKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCCSCC----CTTTTTTC-TTCCEEECCSCCBCTT
T ss_pred cEEECcCCcCCc------cCH--HHcCcCcCCCEEECCCCcCCcc----CHHHHhCC-CCCCEEEeeCCceeCC
Confidence 999999999987 432 4678889999999999999874 23355664 4499999999999875
No 90
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.69 E-value=6.2e-16 Score=136.00 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCC
Q 013056 201 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 279 (450)
Q Consensus 201 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L 279 (450)
+...+..++...++|++|+|++| .|++.+...++..+. .+++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~------------------------------------~~~~L 67 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK------------------------------------TNTYV 67 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT------------------------------------TCCSC
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH------------------------------------hCCCc
Confidence 34444555667788888888888 888877777666543 44667
Q ss_pred CEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc--cCCCCChhh
Q 013056 280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL--RGNNLCKAD 357 (450)
Q Consensus 280 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L--~~n~l~~~~ 357 (450)
++|+|++|.+++.+...+++++..+ ++|++|+|++|.|++ .+...++..+. ..++|++|+| ++|.|+++|
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~----~g~~~l~~~L~---~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISG----SGILALVEALQ---SNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCH----HHHHHHHHGGG---GCSSCCEEECCCCSSCCCHHH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCCH----HHHHHHHHHHH---hCCCceEEEecCCCCCCCHHH
Confidence 7777777777777777777766543 667777777777763 33344455555 4478999999 889999999
Q ss_pred HHHHHHHhhcCCCCCEEecCCCCCChhhH
Q 013056 358 ARDLGSALVHIPNLEILDISDNTIEDDGI 386 (450)
Q Consensus 358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~ 386 (450)
+..+.+.+..+++|++|+|++|.|++.|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~~~~~ 168 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQGPRLR 168 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHHHHHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCChHHH
Confidence 99999999999999999999999998873
No 91
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.68 E-value=6.3e-16 Score=135.30 Aligned_cols=134 Identities=13% Similarity=0.236 Sum_probs=77.4
Q ss_pred HHHHhhcCCCCCCEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEE
Q 013056 268 ELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 346 (450)
Q Consensus 268 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L 346 (450)
.+...+...+.|++|+|++| .|++.+...++++|..+ +.|++|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig--------------------------- 83 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS--------------------------- 83 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB---------------------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC---------------------------
Confidence 56677777888899999885 88888888888887543 45555555555554
Q ss_pred EccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC---CCChhHHHHHHH
Q 013056 347 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC---ELSGRGVSQLLD 423 (450)
Q Consensus 347 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n---~l~~~g~~~l~~ 423 (450)
+.|++.|++++..++.|++|+|+.|.|++.|+.+++ +++...+.|++|+|++| .+++.|..++++
T Consensus 84 --------d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~ 151 (197)
T 1pgv_A 84 --------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151 (197)
T ss_dssp --------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence 444444555555555555555555555555555544 23444444555555433 345555555555
Q ss_pred HHhcCCCCCcEEECcCCCC
Q 013056 424 TLSTLRRPPTSLSIADNNL 442 (450)
Q Consensus 424 ~l~~l~~~L~~L~L~~N~l 442 (450)
.+.. +++|+.|+++.|.+
T Consensus 152 aL~~-N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 152 AIEE-NESLLRVGISFASM 169 (197)
T ss_dssp HHHH-CSSCCEEECCCCCH
T ss_pred HHHh-CCCcCeEeccCCCc
Confidence 5544 44455555544443
No 92
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=2.2e-18 Score=178.31 Aligned_cols=229 Identities=17% Similarity=0.141 Sum_probs=169.5
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.+++.++.+..++..+..+ +|++|++++|.+... + ...+++|+.|++++|.+...... .
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~------~~~l~~L~~L~l~~n~~~~~~~~----------~ 344 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQF-P------TLKLKSLKRLTFTSNKGGNAFSE----------V 344 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSC-C------BCBCSSCCEEEEESCBSCCBCCC----------C
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCccccc-C------cccccccCEEeCcCCcccccccc----------c
Confidence 4566677777777666666666 888888888875522 2 13677888888888876543221 1
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
.+++|++|++++|.++.... .+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCT
T ss_pred cCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCcccccccc------ccccCCCCEEEccCCcccccc
Confidence 26889999999998876221 134566789999999999988763322 245789999999999887532
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
+ ...+..+++|+.|++++|.++. ..+..+..+++|++|++++|.+++.. +| ..+..+++
T Consensus 413 ~----------~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~p---~~~~~l~~ 471 (570)
T 2z63_A 413 E----------FSVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENF----LP---DIFTELRN 471 (570)
T ss_dssp T----------SCTTTTCTTCCEEECTTSCCEE----CCTTTTTTCTTCCEEECTTCEEGGGE----EC---SCCTTCTT
T ss_pred c----------hhhhhcCCCCCEEeCcCCcccc----cchhhhhcCCcCcEEECcCCcCcccc----ch---hhhhcccC
Confidence 2 1233467999999999999987 35667889999999999999987421 34 56888899
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
|++|++++|+++.. .+..+..+ .+|++|++++|.+++..+
T Consensus 472 L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 472 LTFLDLSQCQLEQL----SPTAFNSL-SSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEEECTTSCCCEE----CTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred CCEEECCCCccccC----Chhhhhcc-cCCCEEeCCCCcCCCCCH
Confidence 99999999999985 35566664 459999999999988654
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=5.8e-17 Score=153.32 Aligned_cols=171 Identities=23% Similarity=0.198 Sum_probs=110.6
Q ss_pred cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056 183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 262 (450)
Q Consensus 183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~ 262 (450)
.+++|+.|++++|.+.... . +..+++|+.|++++|.+++... +.. +++|++|++++|.++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~-----~~~l~~L~~L~L~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~--- 104 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-G-----IQYLPNVTKLFLNGNKLTDIKP--LAN--------LKNLGWLFLDENKVKD--- 104 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCCC---
T ss_pred hcCcccEEEccCCCcccCh-h-----HhcCCCCCEEEccCCccCCCcc--ccc--------CCCCCEEECCCCcCCC---
Confidence 4567788888777754431 1 4567778888888887775432 211 5777777777777765
Q ss_pred hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 342 (450)
Q Consensus 263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 342 (450)
+ ..+..+++|++|++++|.+++. .. +..+++|++|++++|.+++. ..+. .+++
T Consensus 105 ------~-~~l~~l~~L~~L~L~~n~i~~~--~~-----l~~l~~L~~L~l~~n~l~~~----------~~l~---~l~~ 157 (291)
T 1h6t_A 105 ------L-SSLKDLKKLKSLSLEHNGISDI--NG-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK 157 (291)
T ss_dssp ------G-GGGTTCTTCCEEECTTSCCCCC--GG-----GGGCTTCCEEECCSSCCCCC----------GGGG---GCTT
T ss_pred ------C-hhhccCCCCCEEECCCCcCCCC--hh-----hcCCCCCCEEEccCCcCCcc----------hhhc---cCCC
Confidence 1 1256677777777777777662 11 23467777777777777652 1223 4567
Q ss_pred eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
|+.|++++|.+++ ++. +..+++|++|++++|.|++ ++ .+..+++|+.|++++|.++.
T Consensus 158 L~~L~L~~N~l~~-----~~~-l~~l~~L~~L~L~~N~i~~------l~----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------LR----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------CG----GGTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCcccc-----chh-hcCCCccCEEECCCCcCCC------Ch----hhccCCCCCEEECcCCcccC
Confidence 7777777777775 333 6677777777777777776 32 35666777777777777655
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=1.3e-17 Score=174.40 Aligned_cols=86 Identities=17% Similarity=0.073 Sum_probs=48.6
Q ss_pred chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHH-HHHHHHHhcc
Q 013056 163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV-EGICRSLCSK 240 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~ 240 (450)
.++.|+|++|.+..++... .++++|++|++++|.+....... +.++++|++|++++|.|+.... ..+..
T Consensus 101 ~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----- 171 (635)
T 4g8a_A 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSN----- 171 (635)
T ss_dssp TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGG-----
T ss_pred CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh----hhcCcccCeeccccCccccCCCchhhcc-----
Confidence 4456666666666665543 35667777777766644332211 4566667777777776653211 11111
Q ss_pred ccCCCCeeEEEcCCCCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIEN 260 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~ 260 (450)
+.+|++|++++|+++..
T Consensus 172 ---l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 172 ---LTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp ---CTTCCEEECCSSCCCEE
T ss_pred ---chhhhhhcccCcccccc
Confidence 46677777777766553
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=2.2e-18 Score=158.22 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=139.2
Q ss_pred CCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhccccCCCCeeEEEcCC-CCCCCCCc
Q 013056 185 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCP 262 (450)
Q Consensus 185 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~-n~i~~~~~ 262 (450)
.++++|++++|.+....... +.++++|+.|++++|. ++......+.. +++|++|++++ |.++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~~l~~i~~~~f~~--------l~~L~~L~l~~~n~l~~--- 95 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSFYN--------LSKVTHIEIRNTRNLTY--- 95 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT----TTTCTTCCEEEEECCSSCCEECTTTEES--------CTTCCEEEEEEETTCCE---
T ss_pred CcccEEEEeCCcceEECHHH----ccCCCCCcEEeCCCCCCcceeCHhHcCC--------CcCCcEEECCCCCCeeE---
Confidence 47888888888865543322 5678888899998886 76443323222 67888899987 88876
Q ss_pred hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCc---EEeccCC-CCCCcccccCcccHHHhhhCCC
Q 013056 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGK 338 (450)
Q Consensus 263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~---~L~Ls~n-~l~~~~~~~~~~~l~~~l~~~~ 338 (450)
.....+..+++|++|++++|.+++ .+. +..+++|+ +|++++| .+++..+ ..+.
T Consensus 96 -----i~~~~f~~l~~L~~L~l~~n~l~~-lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~-----------~~~~ 152 (239)
T 2xwt_C 96 -----IDPDALKELPLLKFLGIFNTGLKM-FPD------LTKVYSTDIFFILEITDNPYMTSIPV-----------NAFQ 152 (239)
T ss_dssp -----ECTTSEECCTTCCEEEEEEECCCS-CCC------CTTCCBCCSEEEEEEESCTTCCEECT-----------TTTT
T ss_pred -----cCHHHhCCCCCCCEEeCCCCCCcc-ccc------cccccccccccEEECCCCcchhhcCc-----------cccc
Confidence 233456778899999999998876 332 24467777 9999999 7775333 2334
Q ss_pred CCCcee-EEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC-CChhhHHHHHHHHHhhcCCC-CCcCEEEccCCCCCh
Q 013056 339 SLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERC-NPLVELYLENCELSG 415 (450)
Q Consensus 339 ~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~-~~L~~L~L~~n~l~~ 415 (450)
.+++|+ .|++++|+++. ++......++|++|++++|+ ++. ++. ..+..+ ++|++|++++|.|+.
T Consensus 153 ~l~~L~~~L~l~~n~l~~-----i~~~~~~~~~L~~L~L~~n~~l~~------i~~--~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTS-----VQGYAFNGTKLDAVYLNKNKYLTV------IDK--DAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTBSSEEEEECCSCCCCE-----ECTTTTTTCEEEEEECTTCTTCCE------ECT--TTTTTCSBCCSEEECTTCCCCC
T ss_pred chhcceeEEEcCCCCCcc-----cCHhhcCCCCCCEEEcCCCCCccc------CCH--HHhhccccCCcEEECCCCcccc
Confidence 678899 99999998885 55544444789999999995 876 332 457777 899999999999887
Q ss_pred hHHHHHHHHHhcCCCCCcEEECcCC
Q 013056 416 RGVSQLLDTLSTLRRPPTSLSIADN 440 (450)
Q Consensus 416 ~g~~~l~~~l~~l~~~L~~L~L~~N 440 (450)
. +.. .+ .+|+.|+++++
T Consensus 220 l-----~~~--~~-~~L~~L~l~~~ 236 (239)
T 2xwt_C 220 L-----PSK--GL-EHLKELIARNT 236 (239)
T ss_dssp C-----CCT--TC-TTCSEEECTTC
T ss_pred C-----Chh--Hh-ccCceeeccCc
Confidence 3 222 22 23889988876
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=7.3e-17 Score=152.62 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=98.5
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChh
Q 013056 213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 292 (450)
Q Consensus 213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 292 (450)
++|+.|++++|.++... . +.. +++|++|++++|.+++. . . +..+++|++|++++|.+++.
T Consensus 46 ~~L~~L~l~~~~i~~~~--~----~~~----l~~L~~L~L~~n~l~~~--------~-~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ--G----IQY----LPNVTKLFLNGNKLTDI--------K-P-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTCCEEECTTSCCCCCT--T----GGG----CTTCCEEECCSSCCCCC--------G-G-GTTCTTCCEEECCSSCCCCG
T ss_pred CcccEEEccCCCcccCh--h----Hhc----CCCCCEEEccCCccCCC--------c-c-cccCCCCCEEECCCCcCCCC
Confidence 45667777776665431 1 111 46677777777766651 1 1 55666777777777766552
Q ss_pred HHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCC
Q 013056 293 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE 372 (450)
Q Consensus 293 ~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 372 (450)
+. +..+++|++|++++|.+++. ..+. .+++|+.|++++|.+++ + ..+..+++|+
T Consensus 106 -~~------l~~l~~L~~L~L~~n~i~~~----------~~l~---~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~ 159 (291)
T 1h6t_A 106 -SS------LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTKLD 159 (291)
T ss_dssp -GG------GTTCTTCCEEECTTSCCCCC----------GGGG---GCTTCCEEECCSSCCCC-----C-GGGGGCTTCS
T ss_pred -hh------hccCCCCCEEECCCCcCCCC----------hhhc---CCCCCCEEEccCCcCCc-----c-hhhccCCCCC
Confidence 11 23456677777777766641 1222 44666777777776665 2 3466666777
Q ss_pred EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 373 ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 373 ~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+|++++|++++ ++ .+..+++|++|++++|.|++. + .+..+ .+|+.|++++|++++
T Consensus 160 ~L~L~~N~l~~------~~----~l~~l~~L~~L~L~~N~i~~l-----~-~l~~l-~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISDL-----R-ALAGL-KNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCBC-----G-GGTTC-TTCSEEEEEEEEEEC
T ss_pred EEEccCCcccc------ch----hhcCCCccCEEECCCCcCCCC-----h-hhccC-CCCCEEECcCCcccC
Confidence 77777777665 22 145566677777777776662 2 24443 337777777666654
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=2.9e-16 Score=139.65 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
.+|++|++++|.++. ++ .+..+++|++|++++|.++... . +..+++|++|++++|.+++..+
T Consensus 44 ~~L~~L~l~~n~i~~---------l~-~l~~l~~L~~L~l~~n~~~~~~--~-----l~~l~~L~~L~l~~n~l~~~~~- 105 (197)
T 4ezg_A 44 NSLTYITLANINVTD---------LT-GIEYAHNIKDLTINNIHATNYN--P-----ISGLSNLERLRIMGKDVTSDKI- 105 (197)
T ss_dssp HTCCEEEEESSCCSC---------CT-TGGGCTTCSEEEEESCCCSCCG--G-----GTTCTTCCEEEEECTTCBGGGS-
T ss_pred CCccEEeccCCCccC---------hH-HHhcCCCCCEEEccCCCCCcch--h-----hhcCCCCCEEEeECCccCcccC-
Confidence 456666776666654 22 3566788888888888765521 1 2447888888888888876333
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCC-CChhhHHHHHHHHHhhcCCCCCc
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNT-IEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~-l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
..+..+++|+.|++++|.+++. .+..+..+++|++|++++|. +++ +| .+..+++|
T Consensus 106 ----------~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~------~~----~l~~l~~L 161 (197)
T 4ezg_A 106 ----------PNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD------IM----PLKTLPEL 161 (197)
T ss_dssp ----------CCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCC------CG----GGGGCSSC
T ss_pred ----------hhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccc------cH----hhcCCCCC
Confidence 3444678889999999988873 46667888899999999987 777 43 36667889
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
++|++++|.+++. + .+..+. +|++|++++|+|++
T Consensus 162 ~~L~l~~n~i~~~-----~-~l~~l~-~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 162 KSLNIQFDGVHDY-----R-GIEDFP-KLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECTTBCCCCC-----T-TGGGCS-SCCEEEECBC----
T ss_pred CEEECCCCCCcCh-----H-HhccCC-CCCEEEeeCcccCC
Confidence 9999999988873 2 456643 48999999998875
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=5e-17 Score=168.83 Aligned_cols=197 Identities=18% Similarity=0.079 Sum_probs=136.2
Q ss_pred cchhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 162 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 162 ~~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
..++.+++++|.+..++. .+++|++|+|++|.+.... ..+++|+.|++++|.|+....
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~~----------- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP--------VLPPGLLELSIFSNPLTHLPA----------- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCC--------CCCTTCCEEEECSCCCCCCCC-----------
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCC--------CCCCCCCEEECcCCcCCCCCC-----------
Confidence 467778888888876665 5689999999999865422 266899999999998885221
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
...+|+.|++++|.++.... .+++|++|+|++|.+++ .+. ...+|+.|++++|.+++.
T Consensus 119 -~l~~L~~L~L~~N~l~~lp~------------~l~~L~~L~Ls~N~l~~-l~~--------~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLAS-LPA--------LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSCC
T ss_pred -CCCCcCEEECCCCCCCcCCC------------CCCCCCEEECcCCcCCC-cCC--------ccCCCCEEECCCCCCCCC
Confidence 15889999999999887332 24899999999999876 221 257899999999998862
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHh-----------------hcCCCCCEEecCCCCCChh
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSAL-----------------VHIPNLEILDISDNTIEDD 384 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l-----------------~~~~~L~~L~Ls~N~l~~~ 384 (450)
| ..+++|+.|++++|.|+. +|..+ ...++|++|+|++|.|+.
T Consensus 177 ---------~------~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 177 ---------P------MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp ---------C------CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-
T ss_pred ---------c------ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-
Confidence 1 133566667777666664 22211 112566777777776665
Q ss_pred hHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCC
Q 013056 385 GIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLG 443 (450)
Q Consensus 385 g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~ 443 (450)
+| ..+++|++|+|++|.|+. ++. . ..+|++|+|++|.|+
T Consensus 236 -----lp------~~l~~L~~L~Ls~N~L~~-----lp~---~-~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 236 -----LP------VLPSELKELMVSGNRLTS-----LPM---L-PSGLLSLSVYRNQLT 274 (622)
T ss_dssp -----CC------CCCTTCCEEECCSSCCSC-----CCC---C-CTTCCEEECCSSCCC
T ss_pred -----CC------CCCCcCcEEECCCCCCCc-----CCc---c-cccCcEEeCCCCCCC
Confidence 32 334677777777777775 333 2 344888888888777
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.8e-16 Score=140.90 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+++|++|++++|.++.. ..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+
T Consensus 65 l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGKDVTSDKIPNL-----SGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp CTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECTTCBGGGSCCC-----TTCTTCCEEECCSSBCBGGGH
T ss_pred CCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECCccCcccChhh-----cCCCCCCEEEecCCccCcHhH
Confidence 34555555555544331 134456666666666666655444333 235666666666666664222
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCC-CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNN-LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
..+. .+++|+.|++++|. +++ ++ .+..+++|++|++++|.+++ + ..+..+++
T Consensus 130 --------~~l~---~l~~L~~L~L~~n~~i~~-----~~-~l~~l~~L~~L~l~~n~i~~------~----~~l~~l~~ 182 (197)
T 4ezg_A 130 --------TKIN---TLPKVNSIDLSYNGAITD-----IM-PLKTLPELKSLNIQFDGVHD------Y----RGIEDFPK 182 (197)
T ss_dssp --------HHHT---TCSSCCEEECCSCTBCCC-----CG-GGGGCSSCCEEECTTBCCCC------C----TTGGGCSS
T ss_pred --------HHHh---hCCCCCEEEccCCCCccc-----cH-hhcCCCCCCEEECCCCCCcC------h----HHhccCCC
Confidence 3343 44666677777765 654 33 46667777777777777766 2 12455567
Q ss_pred cCEEEccCCCCCh
Q 013056 403 LVELYLENCELSG 415 (450)
Q Consensus 403 L~~L~L~~n~l~~ 415 (450)
|++|++++|+|+.
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 7777777776654
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.6e-17 Score=152.38 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=138.1
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCC-CCCCCchhhHHHHHHhhcCCCCCCEEecCC-CCCC
Q 013056 213 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD 290 (450)
Q Consensus 213 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~ 290 (450)
++|+.|++++|.|+......+.. +++|++|++++|. ++. .....+.++++|++|++++ |.++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~--------l~~L~~L~l~~n~~l~~--------i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQ--------LESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTT--------CTTCCEEEEECCSSCCE--------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCcceEECHHHccC--------CCCCcEEeCCCCCCcce--------eCHhHcCCCcCCcEEECCCCCCee
Confidence 47999999999998655444433 6899999999997 776 2234678899999999998 9998
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC-CCChhhHHHHHH-HhhcC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGS-ALVHI 368 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~-~l~~~ 368 (450)
...+.. +..+++|++|++++|.+++ +|. +..+..+..|+.|++++| .++. ++. .+..+
T Consensus 95 ~i~~~~-----f~~l~~L~~L~l~~n~l~~---------lp~-~~~l~~L~~L~~L~l~~N~~l~~-----i~~~~~~~l 154 (239)
T 2xwt_C 95 YIDPDA-----LKELPLLKFLGIFNTGLKM---------FPD-LTKVYSTDIFFILEITDNPYMTS-----IPVNAFQGL 154 (239)
T ss_dssp EECTTS-----EECCTTCCEEEEEEECCCS---------CCC-CTTCCBCCSEEEEEEESCTTCCE-----ECTTTTTTT
T ss_pred EcCHHH-----hCCCCCCCEEeCCCCCCcc---------ccc-cccccccccccEEECCCCcchhh-----cCcccccch
Confidence 743332 3457999999999999986 223 343333333449999999 9987 443 57889
Q ss_pred CCCC-EEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCC-CChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 369 PNLE-ILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCE-LSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 369 ~~L~-~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
++|+ +|++++|.++. +|. ..+.. ++|++|++++|+ ++.. -...+..+..+|++|++++|+|++.
T Consensus 155 ~~L~~~L~l~~n~l~~------i~~--~~~~~-~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTS------VQG--YAFNG-TKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp BSSEEEEECCSCCCCE------ECT--TTTTT-CEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred hcceeEEEcCCCCCcc------cCH--hhcCC-CCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCccccC
Confidence 9999 99999999986 442 33444 799999999995 8873 2334555314599999999999864
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=1.7e-16 Score=163.05 Aligned_cols=183 Identities=19% Similarity=0.158 Sum_probs=130.8
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.++++++.+..++..++ ++|+.|+|++|.+.... ..+++|+.|++++|.|+.. +. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-p~-l--------- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-PE-L--------- 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-CC-C---------
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-ch-h---------
Confidence 45566666776666555443 78999999999866322 3467899999999988852 11 1
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
..+|++|++++|.++... . .+++|++|+|++|.+++ .+. .+++|++|+|++|.+++ +
T Consensus 119 -~~~L~~L~Ls~N~l~~lp---------~---~l~~L~~L~Ls~N~l~~-lp~--------~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 119 -PASLKHLDVDNNQLTMLP---------E---LPALLEYINADNNQLTM-LPE--------LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp -CTTCCEEECCSSCCSCCC---------C---CCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-C
T ss_pred -hcCCCEEECCCCcCCCCC---------C---cCccccEEeCCCCccCc-CCC--------cCCCcCEEECCCCCCCC-c
Confidence 237899999999887722 1 46889999999998876 332 25789999999998886 2
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCC-------CEEecCCCCCChhhHHHHHHHHHh
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNL-------EILDISDNTIEDDGIRSLIPYFVQ 395 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~N~l~~~g~~~l~~~l~~ 395 (450)
| . +. ++|+.|+|++|+|+. +|. +.. +| +.|+|++|.|+. +| .
T Consensus 176 p--------~-l~-----~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~------lp---~ 224 (571)
T 3cvr_A 176 P--------E-LP-----ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH------IP---E 224 (571)
T ss_dssp C--------C-CC-----TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC------CC---G
T ss_pred c--------h-hh-----CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee------cC---H
Confidence 2 3 22 788999999998885 555 333 56 999999999886 55 4
Q ss_pred hcCCCCCcCEEEccCCCCChhHHHH
Q 013056 396 ASERCNPLVELYLENCELSGRGVSQ 420 (450)
Q Consensus 396 ~l~~~~~L~~L~L~~n~l~~~g~~~ 420 (450)
.+..+++|+.|+|++|.|+......
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 4555789999999999998864333
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=3.3e-16 Score=145.81 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=78.0
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056 211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 290 (450)
Q Consensus 211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 290 (450)
.+++|+.|++++|.|+... .+ .. +++|++|++++|.+++. +. +..+++|++|+|++|+++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l----~~----l~~L~~L~L~~N~i~~~---------~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GM----QF----FTNLKELHLSHNQISDL---------SP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TG----GG----CTTCCEEECCSSCCCCC---------GG-GTTCSSCCEEECCSSCCS
T ss_pred hcCcCcEEECcCCCcccch--HH----hh----CCCCCEEECCCCccCCC---------hh-hccCCCCCEEECCCCccC
Confidence 4456666666666665321 11 11 45566666666666551 11 455666666666666655
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
+. +. + .. ++|++|++++|.+++. ..+. .+++|+.|++++|+|++ ++ .+..+++
T Consensus 99 ~l-~~-~-----~~-~~L~~L~L~~N~l~~~----------~~l~---~l~~L~~L~Ls~N~i~~-----~~-~l~~l~~ 151 (263)
T 1xeu_A 99 NL-NG-I-----PS-ACLSRLFLDNNELRDT----------DSLI---HLKNLEILSIRNNKLKS-----IV-MLGFLSK 151 (263)
T ss_dssp CC-TT-C-----CC-SSCCEEECCSSCCSBS----------GGGT---TCTTCCEEECTTSCCCB-----CG-GGGGCTT
T ss_pred Cc-Cc-c-----cc-CcccEEEccCCccCCC----------hhhc---CcccccEEECCCCcCCC-----Ch-HHccCCC
Confidence 41 11 0 11 5566666666665541 1122 44566666666666654 22 3555666
Q ss_pred CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
|++|++++|+|++. ..+..+++|+.|++++|.++.
T Consensus 152 L~~L~L~~N~i~~~----------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 152 LEVLDLHGNEITNT----------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCEEECTTSCCCBC----------TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCEEECCCCcCcch----------HHhccCCCCCEEeCCCCcccC
Confidence 66666666666552 234555666666666665544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.5e-16 Score=142.76 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=92.9
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
.+|++|++++|.++. .....+..+++|++|++++|++++..+.. +..+++|++|++++|.+++..+
T Consensus 28 ~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~- 93 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLNLSTNQLQSLPN- 93 (208)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCcEEEcCCCccCc--------CChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEECCCCcCCccCH-
Confidence 456666666666655 22233456677777777777766532211 2345677777777777665322
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 404 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 404 (450)
..+..+++|+.|++++|.|+. ..+..+..+++|++|+|++|.+++ ++. ..+..+++|+
T Consensus 94 ----------~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~ 151 (208)
T 2o6s_A 94 ----------GVFDKLTQLKELALNTNQLQS----LPDGVFDKLTQLKDLRLYQNQLKS------VPD--GVFDRLTSLQ 151 (208)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCC
T ss_pred ----------hHhcCccCCCEEEcCCCcCcc----cCHhHhccCCcCCEEECCCCccce------eCH--HHhccCCCcc
Confidence 122355677777777777765 122335667777777777777765 221 3356667777
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccccc
Q 013056 405 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCAN 448 (450)
Q Consensus 405 ~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~~ 448 (450)
+|++++|.++.. ...|+.|+++.|.+++.+|.
T Consensus 152 ~L~l~~N~~~~~------------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 152 YIWLHDNPWDCT------------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp EEECCSCCBCCC------------TTTTHHHHHHHHHCTTTBBC
T ss_pred EEEecCCCeecC------------CCCHHHHHHHHHhCCceeec
Confidence 777777766542 12366667777777666653
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=7.2e-16 Score=154.96 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=23.4
Q ss_pred hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCC
Q 013056 164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS 226 (450)
Q Consensus 164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 226 (450)
++.+++++|.+..++.. ..+|++|++++|.+... +. +.++++|+.|++++|.++
T Consensus 155 L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l-~~-----~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 155 LKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-PE-----LQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CC-----CTTCTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCcccCCC---cccccEEECcCCcCCcC-cc-----ccCCCCCCEEECCCCcCC
Confidence 34444555444432221 13455555555543331 11 234455555555555444
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=6.4e-16 Score=160.26 Aligned_cols=171 Identities=22% Similarity=0.190 Sum_probs=106.6
Q ss_pred cCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCc
Q 013056 183 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 262 (450)
Q Consensus 183 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~ 262 (450)
.+++|+.|++++|.+.... . +..+++|+.|+|++|.|++..+ +. . +++|+.|+|++|.+...
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~Ls~N~l~~~~~--l~----~----l~~L~~L~Ls~N~l~~l-- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-G-----IQYLPNVTKLFLNGNKLTDIKP--LT----N----LKNLGWLFLDENKIKDL-- 102 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-T-----GGGCTTCCEEECTTSCCCCCGG--GG----G----CTTCCEEECCSSCCCCC--
T ss_pred cCCCCCEEECcCCCCCCCh-H-----HccCCCCCEEEeeCCCCCCChh--hc----c----CCCCCEEECcCCCCCCC--
Confidence 4466667777766644321 1 4566777777777777665433 11 1 56777777777776651
Q ss_pred hhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCc
Q 013056 263 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 342 (450)
Q Consensus 263 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~ 342 (450)
..+..+++|++|+|++|.+.+. + . +..+++|+.|+|++|.+.+. ..+. .+++
T Consensus 103 --------~~l~~l~~L~~L~Ls~N~l~~l-~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~ 154 (605)
T 1m9s_A 103 --------SSLKDLKKLKSLSLEHNGISDI-N-G-----LVHLPQLESLYLGNNKITDI----------TVLS---RLTK 154 (605)
T ss_dssp --------TTSTTCTTCCEEECTTSCCCCC-G-G-----GGGCTTCSEEECCSSCCCCC----------GGGG---SCTT
T ss_pred --------hhhccCCCCCEEEecCCCCCCC-c-c-----ccCCCccCEEECCCCccCCc----------hhhc---ccCC
Confidence 1355677777777777777652 1 1 23467777777777777652 1223 4567
Q ss_pred eeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 343 LRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 343 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
|+.|+|++|.|++ ++. +..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|.++.
T Consensus 155 L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~i~~------l----~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 155 LDTLSLEDNQISD-----IVP-LAGLTKLQNLYLSKNHISD------L----RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCB------C----GGGTTCTTCSEEECCSEEEEC
T ss_pred CCEEECcCCcCCC-----chh-hccCCCCCEEECcCCCCCC------C----hHHccCCCCCEEEccCCcCcC
Confidence 7777777777765 222 6677777777777777766 3 235666777777777776655
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=5.7e-16 Score=160.63 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=139.7
Q ss_pred cCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCC
Q 013056 211 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 290 (450)
Q Consensus 211 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 290 (450)
.+++|+.|++++|.|.... . +.. +++|+.|+|++|.+++. .+ +..+++|++|+|++|.+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~----l~~----l~~L~~L~Ls~N~l~~~--------~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--G----IQY----LPNVTKLFLNGNKLTDI--------KP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--T----GGG----CTTCCEEECTTSCCCCC--------GG--GGGCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCCCCCCCh--H----Hcc----CCCCCEEEeeCCCCCCC--------hh--hccCCCCCEEECcCCCCC
Confidence 4578999999999988642 1 222 69999999999999882 22 788999999999999998
Q ss_pred hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC
Q 013056 291 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN 370 (450)
Q Consensus 291 ~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 370 (450)
+. + . +..+++|++|+|++|.+.+. ..+. .+++|+.|+|++|.|+. + ..+..+++
T Consensus 101 ~l-~-~-----l~~l~~L~~L~Ls~N~l~~l----------~~l~---~l~~L~~L~Ls~N~l~~-----l-~~l~~l~~ 154 (605)
T 1m9s_A 101 DL-S-S-----LKDLKKLKSLSLEHNGISDI----------NGLV---HLPQLESLYLGNNKITD-----I-TVLSRLTK 154 (605)
T ss_dssp CC-T-T-----STTCTTCCEEECTTSCCCCC----------GGGG---GCTTCSEEECCSSCCCC-----C-GGGGSCTT
T ss_pred CC-h-h-----hccCCCCCEEEecCCCCCCC----------cccc---CCCccCEEECCCCccCC-----c-hhhcccCC
Confidence 72 2 2 35589999999999999862 2234 66899999999999997 3 56889999
Q ss_pred CCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcc
Q 013056 371 LEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 371 L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
|+.|+|++|.|++ ++ .+..+++|+.|+|++|.|++. ..+..+ .+|+.|+|++|++.+.
T Consensus 155 L~~L~Ls~N~l~~------~~----~l~~l~~L~~L~Ls~N~i~~l------~~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 155 LDTLSLEDNQISD------IV----PLAGLTKLQNLYLSKNHISDL------RALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp CSEEECCSSCCCC------CG----GGTTCTTCCEEECCSSCCCBC------GGGTTC-TTCSEEECCSEEEECC
T ss_pred CCEEECcCCcCCC------ch----hhccCCCCCEEECcCCCCCCC------hHHccC-CCCCEEEccCCcCcCC
Confidence 9999999999988 32 277889999999999999983 246664 4499999999998775
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=6.9e-16 Score=155.09 Aligned_cols=200 Identities=17% Similarity=0.111 Sum_probs=139.4
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.++++++.+..++.. .++|++|++++|.+.... ...++|++|++++|.++.. + .+..
T Consensus 92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~--------~~~~~L~~L~L~~n~l~~l-p-~~~~------- 151 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLEKL-P-ELQN------- 151 (454)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--------SCCTTCCEEECCSSCCSSC-C-CCTT-------
T ss_pred CCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc--------CCCCCCCEEECcCCCCCCC-c-ccCC-------
Confidence 566777777777665432 378888888888754321 1125788888888888752 1 2221
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+.+|++|++++|.+++... ..++|++|++++|.+++ .+ . +..+++|++|++++|.+++.
T Consensus 152 -l~~L~~L~l~~N~l~~lp~------------~~~~L~~L~L~~n~l~~-l~-~-----~~~l~~L~~L~l~~N~l~~l- 210 (454)
T 1jl5_A 152 -SSFLKIIDVDNNSLKKLPD------------LPPSLEFIAAGNNQLEE-LP-E-----LQNLPFLTAIYADNNSLKKL- 210 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSS-CC-C-----CTTCTTCCEEECCSSCCSSC-
T ss_pred -CCCCCEEECCCCcCcccCC------------CcccccEEECcCCcCCc-Cc-c-----ccCCCCCCEEECCCCcCCcC-
Confidence 6788888888888876321 12588888888888876 33 2 24578888888888888751
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP 402 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~ 402 (450)
+ . ..++|+.|++++|.++. +| .+..+++|++|++++|+++. +| . ..++
T Consensus 211 ~--------~------~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~------l~---~---~~~~ 258 (454)
T 1jl5_A 211 P--------D------LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT------LP---D---LPPS 258 (454)
T ss_dssp C--------C------CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS------CC---S---CCTT
T ss_pred C--------C------CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc------cc---c---cccc
Confidence 1 1 12578999999998885 56 37888999999999999876 43 1 2378
Q ss_pred cCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 403 LVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 403 L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
|++|++++|.++. ++.. ..+|++|++++|.+++
T Consensus 259 L~~L~l~~N~l~~-----l~~~----~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 259 LEALNVRDNYLTD-----LPEL----PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCEEECCSSCCSC-----CCCC----CTTCCEEECCSSCCSE
T ss_pred cCEEECCCCcccc-----cCcc----cCcCCEEECcCCccCc
Confidence 8999999998876 2221 2348888888888876
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=8.1e-16 Score=157.94 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=17.3
Q ss_pred eEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 344 RLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 344 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
+.|+|++|.|+. +|..+..+++|+.|+|++|.++.
T Consensus 210 ~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRITH-----IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCCC
Confidence 555555555543 44444445555555555555544
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=3.2e-15 Score=136.15 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=108.9
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
.+|++|++++|.++. ..+..+..+++|++|+|++|.++...+.. +..+++|++|+|++|.+++..+
T Consensus 40 ~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-----~~~l~~L~~L~Ls~N~l~~l~~- 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITK--------LEPGVFDSLINLKELYLGSNQLGALPVGV-----FDSLTQLTVLDLGTNQLTVLPS- 105 (229)
T ss_dssp TTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT-
T ss_pred CCCCEEEcCCCccCc--------cCHHHhhCccCCcEEECCCCCCCCcChhh-----cccCCCcCEEECCCCcCCccCh-
Confidence 567777777777776 33455677889999999999886633222 2457899999999999886433
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 404 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 404 (450)
..+..+++|+.|+|++|+|+. +|..+..+++|++|+|++|+|+. ++. ..+..+++|+
T Consensus 106 ----------~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~ 162 (229)
T 3e6j_A 106 ----------AVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKS------IPH--GAFDRLSSLT 162 (229)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCC------CCT--TTTTTCTTCC
T ss_pred ----------hHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCc------cCH--HHHhCCCCCC
Confidence 223467899999999999985 78888899999999999999986 332 4577889999
Q ss_pred EEEccCCCCChh--HHHHHHHHHhc
Q 013056 405 ELYLENCELSGR--GVSQLLDTLST 427 (450)
Q Consensus 405 ~L~L~~n~l~~~--g~~~l~~~l~~ 427 (450)
.|+|++|.++.. .+..+...+..
T Consensus 163 ~L~l~~N~~~c~c~~~~~l~~~~~~ 187 (229)
T 3e6j_A 163 HAYLFGNPWDCECRDIMYLRNWVAD 187 (229)
T ss_dssp EEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred EEEeeCCCccCCcchhHHHHHHHHh
Confidence 999999998754 24445555554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=9.8e-16 Score=149.45 Aligned_cols=177 Identities=21% Similarity=0.166 Sum_probs=104.5
Q ss_pred cEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHH
Q 013056 188 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV 267 (450)
Q Consensus 188 ~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 267 (450)
+.++++++.+...... -.+.++.|+|++|.|+......+. ..+.+|++|+|++|.++.
T Consensus 21 ~~l~c~~~~l~~iP~~-------~~~~l~~L~Ls~N~l~~l~~~~~~-------~~l~~L~~L~L~~N~i~~-------- 78 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-------LPSYTALLDLSHNNLSRLRAEWTP-------TRLTNLHSLLLSHNHLNF-------- 78 (361)
T ss_dssp TEEECCSSCCSSCCSS-------CCTTCSEEECCSSCCCEECTTSSS-------SCCTTCCEEECCSSCCCE--------
T ss_pred CEEEeCCCCcCccCcc-------CCCCCCEEECCCCCCCccChhhhh-------hcccccCEEECCCCcCCc--------
Confidence 5677777775543221 124577888888877754332221 015677777777777766
Q ss_pred HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE
Q 013056 268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 347 (450)
Q Consensus 268 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~ 347 (450)
..+..+..+++|++|+|++|+++...+.. +..+++|++|+|++|.+.+..+ ..+..+++|+.|+
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~~~~-----------~~~~~l~~L~~L~ 142 (361)
T 2xot_A 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFL-----FSDLQALEVLLLYNNHIVVVDR-----------NAFEDMAQLQKLY 142 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEE
T ss_pred cChhhccCCCCCCEEECCCCcCCcCCHHH-----hCCCcCCCEEECCCCcccEECH-----------HHhCCcccCCEEE
Confidence 22334566777777777777776532222 2346777777777777765333 2233557777777
Q ss_pred ccCCCCChhhHHHHHHHh----hcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCC--cCEEEccCCCCCh
Q 013056 348 LRGNNLCKADARDLGSAL----VHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNP--LVELYLENCELSG 415 (450)
Q Consensus 348 L~~n~l~~~~~~~l~~~l----~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~--L~~L~L~~n~l~~ 415 (450)
|++|.|+. ++..+ ..+++|+.|+|++|+|+.-... .+..++. ++.|+|++|.+..
T Consensus 143 L~~N~l~~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~--------~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 143 LSQNQISR-----FPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--------DLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCSSCCCS-----CCGGGTC----CTTCCEEECCSSCCCCCCHH--------HHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCcCCe-----eCHHHhcCcccCCcCCEEECCCCCCCccCHH--------HhhhccHhhcceEEecCCCccC
Confidence 77777775 44333 4567777777777777652211 2222233 3667777777654
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=5.6e-15 Score=133.67 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=109.9
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH
Q 013056 215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 294 (450)
Q Consensus 215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 294 (450)
-+.+++++|.++... ..+ ...+++|++++|.++.... ...+..+++|++|+|++|.+++..+
T Consensus 13 ~~~l~~s~n~l~~iP-----~~~------~~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~ 74 (220)
T 2v70_A 13 GTTVDCSNQKLNKIP-----EHI------PQYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEE 74 (220)
T ss_dssp TTEEECCSSCCSSCC-----SCC------CTTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECT
T ss_pred CCEeEeCCCCcccCc-----cCC------CCCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECH
Confidence 357888888877411 111 3567888888888877211 1235678888888888888877443
Q ss_pred HHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE
Q 013056 295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 374 (450)
Q Consensus 295 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 374 (450)
..+ ..+++|++|+|++|.+++..+ ..+. .+++|++|+|++|.|+. ..+..+..+++|++|
T Consensus 75 ~~~-----~~l~~L~~L~Ls~N~l~~~~~--------~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 75 GAF-----EGASGVNEILLTSNRLENVQH--------KMFK---GLESLKTLMLRSNRITC----VGNDSFIGLSSVRLL 134 (220)
T ss_dssp TTT-----TTCTTCCEEECCSSCCCCCCG--------GGGT---TCSSCCEEECTTSCCCC----BCTTSSTTCTTCSEE
T ss_pred HHh-----CCCCCCCEEECCCCccCccCH--------hHhc---CCcCCCEEECCCCcCCe----ECHhHcCCCccCCEE
Confidence 333 457888888888888886444 3343 56888888888888886 235667788888888
Q ss_pred ecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 375 DISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 375 ~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
+|++|+|+.. .| ..+..+++|++|+|++|.++.
T Consensus 135 ~L~~N~l~~~-----~~---~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 135 SLYDNQITTV-----AP---GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCB-----CT---TTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCEE-----CH---HHhcCCCCCCEEEecCcCCcC
Confidence 8888888762 23 567777888888888888764
No 112
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.54 E-value=1.3e-13 Score=120.66 Aligned_cols=137 Identities=13% Similarity=0.202 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCccEEEccCC-CCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCC
Q 013056 201 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 279 (450)
Q Consensus 201 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L 279 (450)
+...+..+..+-+.|++|+|++| .|.+.+...++++|+. .+.|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~------------------------------------N~~L 72 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN------------------------------------SKHI 72 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT------------------------------------CSCC
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh------------------------------------CCCc
Confidence 34445555667788888998885 8888888887776553 4667
Q ss_pred CEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHH
Q 013056 280 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADAR 359 (450)
Q Consensus 280 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~ 359 (450)
++|+|++|.|++.+...++++|..+ +.|++|+|+.|.|+++|+.
T Consensus 73 ~~L~L~~n~igd~ga~alA~aL~~N------------------------------------~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 73 EKFSLANTAISDSEARGLIELIETS------------------------------------PSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp CEEECTTSCCBHHHHTTHHHHHHHC------------------------------------SSCCEEECCSSBCCHHHHH
T ss_pred CEEEccCCCCChHHHHHHHHHHhcC------------------------------------CccCeEecCCCcCCHHHHH
Confidence 7777777777777777776665443 3345555555555556666
Q ss_pred HHHHHhhcCCCCCEEecCCC---CCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCC
Q 013056 360 DLGSALVHIPNLEILDISDN---TIEDDGIRSLIPYFVQASERCNPLVELYLENCEL 413 (450)
Q Consensus 360 ~l~~~l~~~~~L~~L~Ls~N---~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l 413 (450)
.|.+++..++.|++|+|++| .+++.|..+++ +++...+.|..|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia----~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM----MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH----HHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH----HHHHhCCCcCeEeccCCCc
Confidence 66666666666666666543 45666665555 3344456666666665543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=7e-16 Score=143.62 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=97.1
Q ss_pred hhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCC
Q 013056 165 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 244 (450)
Q Consensus 165 ~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~ 244 (450)
..+++..+.+..++ .+..+++|+.|++++|.+.... . +..+++|+.|++++|.|++... +.. +
T Consensus 22 ~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~L~~N~i~~~~~--l~~--------l 84 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-G-----MQFFTNLKELHLSHNQISDLSP--LKD--------L 84 (263)
T ss_dssp HHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTT--------C
T ss_pred HHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-H-----HhhCCCCCEEECCCCccCCChh--hcc--------C
Confidence 34455555555444 3455667777777777644322 1 4456677777777777665433 111 5
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
++|++|++++|.+++... +.. ++|++|++++|.+++. + . +..+++|++|++++|.+++.
T Consensus 85 ~~L~~L~L~~N~l~~l~~----------~~~-~~L~~L~L~~N~l~~~-~-~-----l~~l~~L~~L~Ls~N~i~~~--- 143 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNG----------IPS-ACLSRLFLDNNELRDT-D-S-----LIHLKNLEILSIRNNKLKSI--- 143 (263)
T ss_dssp SSCCEEECCSSCCSCCTT----------CCC-SSCCEEECCSSCCSBS-G-G-----GTTCTTCCEEECTTSCCCBC---
T ss_pred CCCCEEECCCCccCCcCc----------ccc-CcccEEEccCCccCCC-h-h-----hcCcccccEEECCCCcCCCC---
Confidence 667777777777665221 112 6677777777776652 1 1 23466777777777776651
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
+ .+. .+++|+.|+|++|.|++ + ..+..+++|+.|++++|.++.
T Consensus 144 ------~-~l~---~l~~L~~L~L~~N~i~~-----~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 144 ------V-MLG---FLSKLEVLDLHGNEITN-----T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ------G-GGG---GCTTCCEEECTTSCCCB-----C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ------h-HHc---cCCCCCEEECCCCcCcc-----h-HHhccCCCCCEEeCCCCcccC
Confidence 1 223 44667777777777765 2 446666777777777776654
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=3.6e-15 Score=135.81 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=121.8
Q ss_pred CCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccc
Q 013056 245 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 324 (450)
Q Consensus 245 ~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 324 (450)
+..+.++.+++.++.... . -.++|++|+|++|.+++..+..+ ..+++|++|+|++|.++...+
T Consensus 19 Cs~~~v~c~~~~l~~ip~---------~--~~~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~i~~- 81 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPA---------G--IPTNAQILYLHDNQITKLEPGVF-----DSLINLKELYLGSNQLGALPV- 81 (229)
T ss_dssp EETTEEECTTSCCSSCCS---------C--CCTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT-
T ss_pred EeCCEeEccCCCcCccCC---------C--CCCCCCEEEcCCCccCccCHHHh-----hCccCCcEEECCCCCCCCcCh-
Confidence 445677888887776332 1 13789999999999988555433 457999999999999986433
Q ss_pred cCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcC
Q 013056 325 YDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLV 404 (450)
Q Consensus 325 ~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~ 404 (450)
..+..+++|+.|+|++|+|+. ..+..+..+++|++|+|++|+|+. +| ..+..+++|+
T Consensus 82 ----------~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~~------lp---~~~~~l~~L~ 138 (229)
T 3e6j_A 82 ----------GVFDSLTQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLTE------LP---RGIERLTHLT 138 (229)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCS------CC---TTGGGCTTCS
T ss_pred ----------hhcccCCCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCcccc------cC---cccccCCCCC
Confidence 233467999999999999996 223446889999999999999986 55 5677889999
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 405 ELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 405 ~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+|+|++|+|+.. ....+..+ .+|++|++++|++....+
T Consensus 139 ~L~L~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 139 HLALDQNQLKSI----PHGAFDRL-SSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EEECCSSCCCCC----CTTTTTTC-TTCCEEECTTSCBCTTBG
T ss_pred EEECCCCcCCcc----CHHHHhCC-CCCCEEEeeCCCccCCcc
Confidence 999999999874 22445664 449999999999986643
No 115
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.51 E-value=1.1e-13 Score=134.29 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=123.5
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC--CCCCc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGW 321 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~ 321 (450)
+++|+.|++++|.-.. ++. + .+++|++|+|..+.++...+..++. ..+++|++|+|+.+ ...+
T Consensus 171 ~P~L~~L~L~g~~~l~---------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~- 235 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGF- 235 (362)
T ss_dssp CTTCCEEEEECCBTCB---------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTC-
T ss_pred CCCCcEEEEeCCCCce---------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH---ccCCCCcEEEEecccccccc-
Confidence 5788888887763111 111 2 3689999999999998888777653 35799999998642 2222
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
..+...+...+.. ..+++|+.|+|++|.+++.++..+.++ ..+++|++|+|+.|.|++.|+.++. ..+..++
T Consensus 236 --~~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~----~~L~~l~ 307 (362)
T 2ra8_A 236 --DGDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLL----DHVDKIK 307 (362)
T ss_dssp --CSCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHH----TTHHHHT
T ss_pred --chhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHH----hhcccCC
Confidence 1111122222221 246899999999999998877666554 4688999999999999999998886 3345668
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 441 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~ 441 (450)
+|+.|+|++|.|++.|+..+..++ ...++++.|+
T Consensus 308 ~L~~L~L~~n~i~d~~~~~l~~al------g~~~~~~~~~ 341 (362)
T 2ra8_A 308 HLKFINMKYNYLSDEMKKELQKSL------PMKIDVSDSQ 341 (362)
T ss_dssp TCSEEECCSBBCCHHHHHHHHHHC------CSEEECCSBC
T ss_pred cceEEECCCCcCCHHHHHHHHHHc------CCEEEecCCc
Confidence 999999999999999988887765 2458888876
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.7e-16 Score=162.08 Aligned_cols=105 Identities=26% Similarity=0.335 Sum_probs=79.4
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
.|++|+|++|.+++ .+. + ..+++|+.|+|++|.++. +|..++ .+++|+.|+|++|.|+.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~-----~~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls~N~l~~-- 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L-----EQLLLVTHLDLSHNRLRA---------LPPALA---ALRCLEVLQASDNALEN-- 500 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G-----GGGTTCCEEECCSSCCCC---------CCGGGG---GCTTCCEEECCSSCCCC--
T ss_pred CceEEEecCCCCCC-CcC-c-----cccccCcEeecCcccccc---------cchhhh---cCCCCCEEECCCCCCCC--
Confidence 58888888888876 332 2 446888888888888873 335565 55788888888888885
Q ss_pred HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHH-HHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLI-PYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~-~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
+| .+..+++|++|+|++|+|++. . | ..+..+++|+.|+|++|.|+.
T Consensus 501 ---lp-~l~~l~~L~~L~Ls~N~l~~~-----~~p---~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 501 ---VD-GVANLPRLQELLLCNNRLQQS-----AAI---QPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp ---CG-GGTTCSSCCEEECCSSCCCSS-----STT---GGGGGCTTCCEEECTTSGGGG
T ss_pred ---Cc-ccCCCCCCcEEECCCCCCCCC-----CCc---HHHhcCCCCCEEEecCCcCCC
Confidence 66 788888888888888888762 1 4 567777888888888888765
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=5.7e-15 Score=133.61 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=107.1
Q ss_pred cEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHH
Q 013056 216 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295 (450)
Q Consensus 216 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 295 (450)
+.++.+++.++. +.... ..+|++|++++|.++. ..+..+..+++|++|+|++|.++...+.
T Consensus 14 ~~v~c~~~~l~~---------iP~~l--~~~l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 14 NIVDCRGKGLTE---------IPTNL--PETITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp TEEECTTSCCSS---------CCSSC--CTTCCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CEEEcCCCCcCc---------CCCcc--CcCCCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence 567777777762 11110 2578888888888876 2334566778888888888888775444
Q ss_pred HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEe
Q 013056 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILD 375 (450)
Q Consensus 296 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 375 (450)
.+ ..+++|++|+|++|.++...+ ..+..+++|+.|+|++|.|+. ..+..+..+++|++|+
T Consensus 75 ~~-----~~l~~L~~L~Ls~N~l~~l~~-----------~~f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 75 AF-----QGLRSLNSLVLYGNKITELPK-----------SLFEGLFSLQLLLLNANKINC----LRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TT-----TTCSSCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEE
T ss_pred Hh-----hCCcCCCEEECCCCcCCccCH-----------hHccCCCCCCEEECCCCCCCE----eCHHHcCCCCCCCEEE
Confidence 43 446888888888888875332 223466888888888888886 2355677888888888
Q ss_pred cCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 376 ISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 376 Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
|++|.|+. ++. ..+..+++|++|+|++|.+..
T Consensus 135 L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 135 LYDNKLQT------IAK--GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCSC------CCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCE------ECH--HHHhCCCCCCEEEeCCCCcCC
Confidence 88888876 321 456777888888888888654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=2e-16 Score=162.99 Aligned_cols=198 Identities=21% Similarity=0.171 Sum_probs=135.8
Q ss_pred hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCC
Q 013056 182 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 261 (450)
Q Consensus 182 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~ 261 (450)
..+++|+.|+|++|.+...+.. +.++++|+.|++++|... ..+...+.. +.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~-----i~~l~~L~~L~l~~n~~l----~~l~~ll~~---------------~~~~~-- 399 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSE-----LESCKELQELEPENKWCL----LTIILLMRA---------------LDPLL-- 399 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHH-----HHHHHHHHHHCTTCHHHH----HHHHHHHHH---------------HCTGG--
T ss_pred ccCccceeccCChhhHHhhHHH-----HHHHHHHHHhccccchhh----hhHHHHHHh---------------ccccc--
Confidence 3467778888888775433222 345667777777654321 111111100 01112
Q ss_pred chhhHHHHHHhhcCCCCCCEEe-cCCCCCChhHHH-----HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhh
Q 013056 262 PSSVVVELVSFLSSGRSLCSLK-LRHCHLDRDFGR-----MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG 335 (450)
Q Consensus 262 ~~~~~~~l~~~l~~~~~L~~L~-Ls~n~l~~~~~~-----~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~ 335 (450)
..+..++.+++|+.|+ ++.|.+..-... .+. .+ . ...|+.|+|++|.+++ +|. ++
T Consensus 400 ------~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~-~l-~-~~~L~~L~Ls~n~l~~---------lp~-~~ 460 (567)
T 1dce_A 400 ------YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL-KM-E-YADVRVLHLAHKDLTV---------LCH-LE 460 (567)
T ss_dssp ------GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-HH-H-HTTCSEEECTTSCCSS---------CCC-GG
T ss_pred ------CCHHHHHHHHhcccCcchhhcccchhhhhhhhccccc-cc-C-ccCceEEEecCCCCCC---------CcC-cc
Confidence 3556666777888887 565544321110 111 11 1 2469999999999986 333 44
Q ss_pred CCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 336 AGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 336 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
.+++|+.|+|++|.|+. +|..+..+++|+.|+|++|.|+. +| .+..+++|++|+|++|.|+.
T Consensus 461 ---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~------lp----~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 461 ---QLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN------VD----GVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp ---GGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC------CG----GGTTCSSCCEEECCSSCCCS
T ss_pred ---ccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC------Cc----ccCCCCCCcEEECCCCCCCC
Confidence 56899999999999995 88999999999999999999997 54 47888999999999999998
Q ss_pred hHHHHH-HHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 416 RGVSQL-LDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 416 ~g~~~l-~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
. . +..+..+.. |+.|+|++|+|++..+
T Consensus 523 ~----~~p~~l~~l~~-L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 523 S----AAIQPLVSCPR-LVLLNLQGNSLCQEEG 550 (567)
T ss_dssp S----STTGGGGGCTT-CCEEECTTSGGGGSSS
T ss_pred C----CCcHHHhcCCC-CCEEEecCCcCCCCcc
Confidence 3 2 677888544 9999999999988755
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=1.6e-15 Score=147.99 Aligned_cols=180 Identities=21% Similarity=0.142 Sum_probs=112.8
Q ss_pred hhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHh-cCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 164 ARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQ-NSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 164 l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.+.++++++.+..+|..+. ..++.|+|++|.+....... +. ++++|+.|+|++|.|+......+..
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~------- 86 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVP------- 86 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTT-------
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccC-------
Confidence 3445666666666555443 45778888888755443322 33 6778888888888877554433332
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+.+|++|+|++|.++. .....+..+++|++|+|++|.++...+..+ ..+++|++|+|++|.+++..
T Consensus 87 -l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 87 -VPNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp -CTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSSCCCSCC
T ss_pred -CCCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHHh-----CCcccCCEEECCCCcCCeeC
Confidence 5778888888888776 233456677888888888888776433333 44678888888888877532
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCC--CCEEecCCCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPN--LEILDISDNTIE 382 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~N~l~ 382 (450)
+ ..+..+..+++|+.|+|++|.|+.-. +..+..++. |+.|+|++|.+.
T Consensus 153 ~--------~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 V--------ELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp G--------GGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCHHHHTTEECCSSCEE
T ss_pred H--------HHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccHhhcceEEecCCCcc
Confidence 2 22221135677888888888877622 234555655 477888888775
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=6.4e-15 Score=133.30 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=107.1
Q ss_pred cEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHH
Q 013056 188 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV 267 (450)
Q Consensus 188 ~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 267 (450)
+.++++++.+...... -.++|+.|++++|.|+......+.. +.+|++|+|++|.++.
T Consensus 14 ~~v~c~~~~l~~iP~~-------l~~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~-------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-------LPETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISE-------- 70 (220)
T ss_dssp TEEECTTSCCSSCCSS-------CCTTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCE--------
T ss_pred CEEEcCCCCcCcCCCc-------cCcCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCC--------
Confidence 5677777775543321 1257888899988887544333322 5788889998888877
Q ss_pred HHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEE
Q 013056 268 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 347 (450)
Q Consensus 268 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~ 347 (450)
..+..+.++++|++|+|++|.++.. +..+ +..+++|++|+|++|.+++..+ ..+..+++|+.|+
T Consensus 71 ~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~----f~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 71 LAPDAFQGLRSLNSLVLYGNKITEL-PKSL----FEGLFSLQLLLLNANKINCLRV-----------DAFQDLHNLNLLS 134 (220)
T ss_dssp ECTTTTTTCSSCCEEECCSSCCCCC-CTTT----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEE
T ss_pred cCHHHhhCCcCCCEEECCCCcCCcc-CHhH----ccCCCCCCEEECCCCCCCEeCH-----------HHcCCCCCCCEEE
Confidence 3455677888889999998888763 2221 3457888999999988887544 3334668888899
Q ss_pred ccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056 348 LRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 382 (450)
Q Consensus 348 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 382 (450)
|++|.|+.. .+..+..+++|++|+|++|.+.
T Consensus 135 L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQTI----AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSCC----CTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCEE----CHHHHhCCCCCCEEEeCCCCcC
Confidence 999888862 2335777888889999888874
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=5.8e-15 Score=133.56 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=108.5
Q ss_pred cEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHH-HHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhH
Q 013056 188 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE-GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 266 (450)
Q Consensus 188 ~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 266 (450)
+.+++++|.+...... -.+.+++|+|++|.|+...+. .+.. +++|++|++++|.++.
T Consensus 14 ~~l~~s~n~l~~iP~~-------~~~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~------- 71 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-------IPQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITD------- 71 (220)
T ss_dssp TEEECCSSCCSSCCSC-------CCTTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCE-------
T ss_pred CEeEeCCCCcccCccC-------CCCCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCE-------
Confidence 5788888876543221 234678889998888754321 1211 6788899998888877
Q ss_pred HHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEE
Q 013056 267 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 346 (450)
Q Consensus 267 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L 346 (450)
.....+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+ ..+..+++|+.|
T Consensus 72 -i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L 134 (220)
T 2v70_A 72 -IEEGAFEGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSNRITCVGN-----------DSFIGLSSVRLL 134 (220)
T ss_dssp -ECTTTTTTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTSCCCCBCT-----------TSSTTCTTCSEE
T ss_pred -ECHHHhCCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCCcCCeECH-----------hHcCCCccCCEE
Confidence 333456778889999999888877444333 457888999999988887544 333466888889
Q ss_pred EccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056 347 NLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 382 (450)
Q Consensus 347 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 382 (450)
+|++|.|+. ..|..+..+++|++|+|++|.+.
T Consensus 135 ~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITT----VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCC----BCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCE----ECHHHhcCCCCCCEEEecCcCCc
Confidence 999988886 23667788888999999988875
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=4.9e-14 Score=126.19 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=117.2
Q ss_pred eEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCc
Q 013056 248 ENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR 327 (450)
Q Consensus 248 ~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~ 327 (450)
+.++.+++.++..... ..++|++|++++|.+++..+.. +..+++|++|++++|.+++..+
T Consensus 10 ~~v~c~~~~l~~~p~~-----------~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~---- 69 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-----------IPAQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPN---- 69 (208)
T ss_dssp TEEECCSSCCSSCCSC-----------CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT----
T ss_pred CEEEecCCCccCCCCC-----------CCCCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccCh----
Confidence 4666777766653221 2468999999999998643332 2457999999999999986433
Q ss_pred ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056 328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 407 (450)
Q Consensus 328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~ 407 (450)
..+..+++|++|+|++|.++. ..+..+..+++|++|++++|+|+. ++. ..+..+++|++|+
T Consensus 70 -------~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 70 -------GVFNKLTSLTYLNLSTNQLQS----LPNGVFDKLTQLKELALNTNQLQS------LPD--GVFDKLTQLKDLR 130 (208)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEE
T ss_pred -------hhcCCCCCcCEEECCCCcCCc----cCHhHhcCccCCCEEEcCCCcCcc------cCH--hHhccCCcCCEEE
Confidence 223467999999999999986 223446889999999999999987 331 4578889999999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCcccc
Q 013056 408 LENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 408 L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
+++|.++.. ....+..+ .+|++|++++|++.+..+
T Consensus 131 l~~N~l~~~----~~~~~~~l-~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 131 LYQNQLKSV----PDGVFDRL-TSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCSSCCSCC----CTTTTTTC-TTCCEEECCSCCBCCCTT
T ss_pred CCCCcccee----CHHHhccC-CCccEEEecCCCeecCCC
Confidence 999999874 22335553 459999999999987655
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=2.8e-14 Score=149.04 Aligned_cols=185 Identities=18% Similarity=0.107 Sum_probs=95.7
Q ss_pred CccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhh
Q 013056 186 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 265 (450)
Q Consensus 186 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 265 (450)
++++|+|++|.+....+.. +.++++|++|+|++|.|+...+.++.. +++|++|+|++|+++.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~--------L~~L~~L~Ls~N~l~~------ 114 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS------ 114 (635)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT--------CTTCCEEECTTCCCCE------
T ss_pred CCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcC--------CCCCCEEEccCCcCCC------
Confidence 5666666666654432221 456666666666666666433333322 4666666666666655
Q ss_pred HHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056 266 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 345 (450)
Q Consensus 266 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 345 (450)
..+..|.++++|++|+|++|++++..+.. +..+++|++|+|++|.+.+.. +|..++ .+++|++
T Consensus 115 --l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~---~l~~L~~ 177 (635)
T 4g8a_A 115 --LALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFK-------LPEYFS---NLTNLEH 177 (635)
T ss_dssp --ECGGGGTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCC-------CCGGGG---GCTTCCE
T ss_pred --CCHHHhcCCCCCCEEECCCCcCCCCChhh-----hhcCcccCeeccccCccccCC-------Cchhhc---cchhhhh
Confidence 22234556666777777776665522211 234566777777776665311 113333 3466667
Q ss_pred EEccCCCCChhhHHHHHHHhhcCC-CCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCCh
Q 013056 346 LNLRGNNLCKADARDLGSALVHIP-NLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSG 415 (450)
Q Consensus 346 L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~ 415 (450)
|+|++|+|+......+. .+...+ .+..++++.|.++. ++ ........++.+++.+|..+.
T Consensus 178 L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~------i~---~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 178 LDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNF------IQ---PGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp EECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCE------EC---TTTTTTCEEEEEEEESCCSSH
T ss_pred hcccCcccccccccccc-chhhhhhhhhhhhcccCcccc------cC---cccccchhhhhhhhhcccccc
Confidence 77777766552111111 122222 23456666666654 22 112222455666666665543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=5.3e-15 Score=156.94 Aligned_cols=115 Identities=23% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEcc
Q 013056 270 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLR 349 (450)
Q Consensus 270 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~ 349 (450)
+..+..++.|+.|+|++|.+.. .+..+. .+++|++|+|++|.++. +|..++ .+++|+.|+|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-----~l~~L~~L~Ls~N~l~~---------lp~~~~---~l~~L~~L~Ls 278 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-----KYDFLTRLYLNGNSLTE---------LPAEIK---NLSNLRVLDLS 278 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGG-----GCCSCSCCBCTTSCCSC---------CCGGGG---GGTTCCEEECT
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhc-----CCCCCCEEEeeCCcCcc---------cChhhh---CCCCCCEEeCc
Confidence 3344455556666666665543 222221 24556666666665552 223343 34556666666
Q ss_pred CCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh
Q 013056 350 GNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR 416 (450)
Q Consensus 350 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~ 416 (450)
+|.|+. +|..+..+++|++|+|++|.|+. +| ..+..+++|++|+|++|.|+..
T Consensus 279 ~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~------lp---~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 279 HNRLTS-----LPAELGSCFQLKYFYFFDNMVTT------LP---WEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TSCCSS-----CCSSGGGGTTCSEEECCSSCCCC------CC---SSTTSCTTCCCEECTTSCCCSH
T ss_pred CCcCCc-----cChhhcCCCCCCEEECCCCCCCc------cC---hhhhcCCCccEEeCCCCccCCC
Confidence 666553 45555556666666666666554 44 3355556666666666665543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=3.2e-14 Score=122.81 Aligned_cols=137 Identities=22% Similarity=0.248 Sum_probs=69.3
Q ss_pred CCCCEEecCCCCCC-hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056 277 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355 (450)
Q Consensus 277 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 355 (450)
++|++|++++|.++ +..+..+ ..+++|++|++++|.+++. ..+..+++|+.|++++|.++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-----~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-----AEFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIFG 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-----GGGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCCS
T ss_pred ccCCEEECCCCCCChhhHHHHH-----HhCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCch
Confidence 45555555555554 2222211 2245566666666665531 223345566666666666654
Q ss_pred hhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEE
Q 013056 356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 435 (450)
Q Consensus 356 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L 435 (450)
.+|..+..+++|++|+|++|.|++ ++.+ ..+..+++|++|++++|.++..... ....+..+. +|++|
T Consensus 86 ----~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~-~L~~L 152 (168)
T 2ell_A 86 ----GLDMLAEKLPNLTHLNLSGNKLKD------ISTL-EPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLLP-QLTYL 152 (168)
T ss_dssp ----CCCHHHHHCTTCCEEECBSSSCCS------SGGG-GGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTCS-SCCEE
T ss_pred ----HHHHHHhhCCCCCEEeccCCccCc------chhH-HHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhCc-cCcEe
Confidence 134444556666666666666655 2111 2345556666666666665553110 012344432 36666
Q ss_pred ECcCCCCCc
Q 013056 436 SIADNNLGR 444 (450)
Q Consensus 436 ~L~~N~l~~ 444 (450)
++++|.+..
T Consensus 153 ~l~~n~~~~ 161 (168)
T 2ell_A 153 DGYDREDQE 161 (168)
T ss_dssp TTEETTSCB
T ss_pred cCCCCChhh
Confidence 666666544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.2e-14 Score=121.51 Aligned_cols=137 Identities=23% Similarity=0.159 Sum_probs=109.1
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
.++|++|++++|.+++. .++..+..+++|++|++++|.+++. .. +..+++|++|++++|.+.+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~-------~i~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDG-------KIEGLTAEFVNLEFLSLINVGLISV--SN-----LPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTT-------BCSSCCGGGGGCCEEEEESSCCCCC--SS-----CCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCChh-------hHHHHHHhCCCCCEEeCcCCCCCCh--hh-----hccCCCCCEEECcCCcCchHHH
Confidence 58899999999999821 2445567889999999999999874 22 3568999999999999987544
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHH--HHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLG--SALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
..+. .+++|+.|+|++|.|++ ++ ..+..+++|++|++++|.+++... .....+..++
T Consensus 89 --------~~~~---~l~~L~~L~Ls~N~l~~-----~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~ 147 (168)
T 2ell_A 89 --------MLAE---KLPNLTHLNLSGNKLKD-----ISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLP 147 (168)
T ss_dssp --------HHHH---HCTTCCEEECBSSSCCS-----SGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCS
T ss_pred --------HHHh---hCCCCCEEeccCCccCc-----chhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCc
Confidence 5555 46899999999999997 44 678899999999999999987311 0002577889
Q ss_pred CcCEEEccCCCCCh
Q 013056 402 PLVELYLENCELSG 415 (450)
Q Consensus 402 ~L~~L~L~~n~l~~ 415 (450)
+|++|++++|.+..
T Consensus 148 ~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 148 QLTYLDGYDREDQE 161 (168)
T ss_dssp SCCEETTEETTSCB
T ss_pred cCcEecCCCCChhh
Confidence 99999999998766
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=9.7e-14 Score=117.26 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=68.2
Q ss_pred CCCCEEecCCCCCC-hhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCCh
Q 013056 277 RSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCK 355 (450)
Q Consensus 277 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~ 355 (450)
++|++|++++|.++ +..+.. +..+++|++|++++|.+++. ..+..+++|+.|++++|.++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVGLTSI-------------ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSCCCCC-------------TTCCCCTTCCEEECCSSCCCS
T ss_pred ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCCCCCc-------------hhhhcCCCCCEEECCCCcccc
Confidence 44555555555554 222221 12345666666666665541 222345666666666666664
Q ss_pred hhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEE
Q 013056 356 ADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSL 435 (450)
Q Consensus 356 ~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L 435 (450)
.+|..+..+++|++|++++|.+++ ++.. ..+..+++|++|++++|.++..... ....+..+. +|++|
T Consensus 79 ----~~~~~~~~l~~L~~L~ls~N~i~~------~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~-~L~~L 145 (149)
T 2je0_A 79 ----GLEVLAEKCPNLTHLNLSGNKIKD------LSTI-EPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLP-QLTYL 145 (149)
T ss_dssp ----CTHHHHHHCTTCCEEECTTSCCCS------HHHH-GGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCT-TCCEE
T ss_pred ----hHHHHhhhCCCCCEEECCCCcCCC------hHHH-HHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCC-Ccccc
Confidence 245555556666666666666665 2110 3355556666666666666553210 012344432 26666
Q ss_pred ECc
Q 013056 436 SIA 438 (450)
Q Consensus 436 ~L~ 438 (450)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 664
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=1.9e-13 Score=115.41 Aligned_cols=134 Identities=22% Similarity=0.149 Sum_probs=103.3
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
.++|++|++++|.+++. .++..+..+++|++|++++|.+++. .. +..+++|++|++++|.+++..+
T Consensus 16 ~~~l~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG-------KLEGLTDEFEELEFLSTINVGLTSI--AN-----LPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTT-------BCCSCCTTCTTCCEEECTTSCCCCC--TT-----CCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCChh-------HHHHHHhhcCCCcEEECcCCCCCCc--hh-----hhcCCCCCEEECCCCcccchHH
Confidence 47899999999999821 2445667889999999999999874 22 3568999999999999987433
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCc
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
..+. .+++|++|++++|.+++.. .+..+..+++|++|++++|.+++.... .+ ..+..+++|
T Consensus 82 --------~~~~---~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~---~~~~~l~~L 142 (149)
T 2je0_A 82 --------VLAE---KCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLNDY--RE---NVFKLLPQL 142 (149)
T ss_dssp --------HHHH---HCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTTH--HH---HHHHHCTTC
T ss_pred --------HHhh---hCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHHH--HH---HHHHHCCCc
Confidence 5555 4589999999999999721 237789999999999999999873210 00 235666899
Q ss_pred CEEEccC
Q 013056 404 VELYLEN 410 (450)
Q Consensus 404 ~~L~L~~ 410 (450)
++|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 9999874
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=3.3e-15 Score=145.09 Aligned_cols=181 Identities=19% Similarity=0.023 Sum_probs=82.1
Q ss_pred chhhcccccCcchhhhHhh-hcCCCccEEEeecccChHHHHHHHHHHHhcCCCccE-EEccCCCCChhHHHHHHHHHhcc
Q 013056 163 YARCLRLQNALCVEETCQL-LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLAS-LEFLHCKLSPSFVEGICRSLCSK 240 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l-~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~-L~Ls~n~l~~~~~~~l~~~L~~~ 240 (450)
.++.|+|++|.+..++... .++++|++|+|++|.+...++. ..+.+++++.+ +.+++|+|+...+..+..
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~----- 102 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLYINPEAFQN----- 102 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT---TSBCSCTTCCEEEEEEETTCCEECTTSBCC-----
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh---hHhhcchhhhhhhcccCCcccccCchhhhh-----
Confidence 3455556666555555433 3556666666666653221110 01334444443 344445555332222111
Q ss_pred ccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCC-CCCChhHHHHHHHHHhhCCCCCcEEeccCCCCC
Q 013056 241 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 319 (450)
Q Consensus 241 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 319 (450)
+++|++|++++|.++.... ..+....++..|++.+ +.+.......+ ......++.|+|++|.|+
T Consensus 103 ---l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f----~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 103 ---LPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSF----VGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ---CTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSS----TTSBSSCEEEECCSSCCC
T ss_pred ---ccccccccccccccccCCc--------hhhcccchhhhhhhccccccccccccch----hhcchhhhhhcccccccc
Confidence 4556666666665554221 1122334455555543 23433111111 011234566666666665
Q ss_pred CcccccCcccHHHhhhCCCCCCceeEEEccC-CCCChhhHHHHHH-HhhcCCCCCEEecCCCCCCh
Q 013056 320 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG-NNLCKADARDLGS-ALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~ 383 (450)
... .... ...+|+.|++.+ |.++. +|. ++..+++|++|||++|+|+.
T Consensus 168 ~i~---------~~~f---~~~~L~~l~l~~~n~l~~-----i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 168 EIH---------NSAF---NGTQLDELNLSDNNNLEE-----LPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEC---------TTSS---TTEEEEEEECTTCTTCCC-----CCTTTTTTEECCSEEECTTSCCCC
T ss_pred CCC---------hhhc---cccchhHHhhccCCcccC-----CCHHHhccCcccchhhcCCCCcCc
Confidence 421 1111 224566666653 34553 443 34566666666666666655
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.2e-13 Score=122.00 Aligned_cols=132 Identities=18% Similarity=0.142 Sum_probs=99.1
Q ss_pred eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056 247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326 (450)
Q Consensus 247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 326 (450)
-+.++++++.++... ..+ ..+|++|++++|.+++..+... +..+++|++|+|++|.+++..+
T Consensus 10 ~~~l~~s~~~l~~ip---------~~~--~~~l~~L~l~~n~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--- 71 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIP---------RDI--PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEP--- 71 (192)
T ss_dssp TTEEECTTSCCSSCC---------SCC--CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCT---
T ss_pred CCEEEcCCCCcCcCc---------cCC--CCCCCEEECCCCcCCccCCccc----cccCCCCCEEECCCCCCCCcCH---
Confidence 478899999887632 222 2389999999999877433211 2447899999999999987544
Q ss_pred cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 406 (450)
Q Consensus 327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L 406 (450)
.. +..+++|+.|+|++|+|+. ..+..+..+++|++|+|++|+|+.. .| ..+..+++|++|
T Consensus 72 -----~~---~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~-----~~---~~~~~l~~L~~L 131 (192)
T 1w8a_A 72 -----NA---FEGASHIQELQLGENKIKE----ISNKMFLGLHQLKTLNLYDNQISCV-----MP---GSFEHLNSLTSL 131 (192)
T ss_dssp -----TT---TTTCTTCCEEECCSCCCCE----ECSSSSTTCTTCCEEECCSSCCCEE-----CT---TSSTTCTTCCEE
T ss_pred -----hH---cCCcccCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCee-----CH---HHhhcCCCCCEE
Confidence 33 3467899999999999987 2344577889999999999999873 34 567788999999
Q ss_pred EccCCCCChh
Q 013056 407 YLENCELSGR 416 (450)
Q Consensus 407 ~L~~n~l~~~ 416 (450)
+|++|.++..
T Consensus 132 ~L~~N~l~c~ 141 (192)
T 1w8a_A 132 NLASNPFNCN 141 (192)
T ss_dssp ECTTCCBCCS
T ss_pred EeCCCCccCc
Confidence 9999998753
No 131
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.38 E-value=3.8e-13 Score=130.43 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=129.9
Q ss_pred hhhcCCCccEEEeecccChH----HH-HHHHHHHHhcCCCccEEEccCCC-CChhHHHHHHHHHhccccCCCCeeEEEcC
Q 013056 180 QLLRESKLQSLVLRWIRFEE----HV-QALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSID 253 (450)
Q Consensus 180 ~l~~~~~L~~L~Ls~n~~~~----~~-~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~~~~L~~L~L~ 253 (450)
.+.++++|+.|.+..+..+. .+ ..-+..++..+|+|+.|+|++|. +.- .. .+.++|++|++.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l----------~~--~~~~~L~~L~L~ 201 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI----------GK--KPRPNLKSLEII 201 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC----------CS--CBCTTCSEEEEE
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee----------cc--ccCCCCcEEEEe
Confidence 34456788888886543210 00 00122335677889999988772 220 00 115788999998
Q ss_pred CCCCCCCCchhhHHHHHHhhc--CCCCCCEEecCC--CC-CChhHHHHHHHHHh-hCCCCCcEEeccCCCCCCcccccCc
Q 013056 254 ISSFIENCPSSVVVELVSFLS--SGRSLCSLKLRH--CH-LDRDFGRMVFSSLL-EASSSLSILDLSGNSIGGWLSKYDR 327 (450)
Q Consensus 254 ~n~i~~~~~~~~~~~l~~~l~--~~~~L~~L~Ls~--n~-l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~~~ 327 (450)
.|.++. .....+. .+|+|++|+|+. |. ..+.++..+...+. ..+++|++|+|++|.+++...
T Consensus 202 ~~~l~~--------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~---- 269 (362)
T 2ra8_A 202 SGGLPD--------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV---- 269 (362)
T ss_dssp CSBCCH--------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH----
T ss_pred cCCCCh--------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH----
Confidence 888766 3334443 688999998853 21 12212222222222 236899999999988874221
Q ss_pred ccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEE
Q 013056 328 SGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELY 407 (450)
Q Consensus 328 ~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~ 407 (450)
..+.....+++|++|+|+.|.|++.|++.++..+..+++|+.|+|++|.|++.|+.++.. ++ ...++
T Consensus 270 ----~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~----al-----g~~~~ 336 (362)
T 2ra8_A 270 ----EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK----SL-----PMKID 336 (362)
T ss_dssp ----HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH----HC-----CSEEE
T ss_pred ----HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH----Hc-----CCEEE
Confidence 333322356899999999999999999999988889999999999999999999998863 23 45689
Q ss_pred ccCCC
Q 013056 408 LENCE 412 (450)
Q Consensus 408 L~~n~ 412 (450)
++.++
T Consensus 337 ~~~~~ 341 (362)
T 2ra8_A 337 VSDSQ 341 (362)
T ss_dssp CCSBC
T ss_pred ecCCc
Confidence 98887
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.5e-14 Score=151.73 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=70.3
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+..|+.|+|++|.+.. ++..+..+++|++|+|++|.|+ ..+..+ ..+++|++|+|++|.|+.
T Consensus 223 l~~L~~L~Ls~n~l~~---------l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-----~~l~~L~~L~Ls~N~l~~--- 284 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN---------ISANIFKYDFLTRLYLNGNSLT-ELPAEI-----KNLSNLRVLDLSHNRLTS--- 284 (727)
T ss_dssp CCCCCEEECTTSCCSC---------CCGGGGGCCSCSCCBCTTSCCS-CCCGGG-----GGGTTCCEEECTTSCCSS---
T ss_pred CCCCcEEECCCCCCCC---------CChhhcCCCCCCEEEeeCCcCc-ccChhh-----hCCCCCCEEeCcCCcCCc---
Confidence 4667777777777665 2223335677777777777776 344433 335777777777777763
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
+|..++ .+++|+.|+|++|.|+. +|..+..+++|++|+|++|.|+.
T Consensus 285 ------lp~~~~---~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 285 ------LPAELG---SCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ------CCSSGG---GGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCS
T ss_pred ------cChhhc---CCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCC
Confidence 224444 45677777777777764 66667777777777777777765
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=2.1e-13 Score=118.73 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=78.0
Q ss_pred CCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccc
Q 013056 244 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 323 (450)
Q Consensus 244 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~ 323 (450)
+.+|++|++++|.++.. +......++|++|++++|.+++. .. +..+++|++|++++|.+++..+
T Consensus 18 ~~~L~~L~l~~n~l~~i---------~~~~~~~~~L~~L~Ls~N~l~~~--~~-----l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---------ENLGATLDQFDAIDFSDNEIRKL--DG-----FPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp TTSCEEEECTTSCCCSC---------CCGGGGTTCCSEEECCSSCCCEE--CC-----CCCCSSCCEEECCSSCCCEECS
T ss_pred cCCceEEEeeCCCCchh---------HHhhhcCCCCCEEECCCCCCCcc--cc-----cccCCCCCEEECCCCcccccCc
Confidence 56677777777777652 11112223777777777777652 11 2446677777777777664211
Q ss_pred ccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH--HhhcCCCCCEEecCCCCCChhhHHHHHHHH-HhhcCCC
Q 013056 324 KYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS--ALVHIPNLEILDISDNTIEDDGIRSLIPYF-VQASERC 400 (450)
Q Consensus 324 ~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l-~~~l~~~ 400 (450)
..+. .+++|+.|++++|.|++ ++. .+..+++|++|++++|.+++. |.. ...+..+
T Consensus 82 --------~~~~---~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~------~~~~~~~~~~l 139 (176)
T 1a9n_A 82 --------GLDQ---ALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNK------KHYRLYVIYKV 139 (176)
T ss_dssp --------CHHH---HCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGS------TTHHHHHHHHC
T ss_pred --------chhh---cCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCc------HhHHHHHHHHC
Confidence 1223 34667777777777764 444 566677777777777776542 100 0124445
Q ss_pred CCcCEEEccCCCCCh
Q 013056 401 NPLVELYLENCELSG 415 (450)
Q Consensus 401 ~~L~~L~L~~n~l~~ 415 (450)
++|++|++++|.+.+
T Consensus 140 ~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 140 PQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCSEETTEECCHHH
T ss_pred CccceeCCCcCCHHH
Confidence 677777777776544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=5.3e-13 Score=116.11 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=17.4
Q ss_pred CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCCh
Q 013056 246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 291 (450)
Q Consensus 246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 291 (450)
+|++|++++|.++. . ..+..+++|++|++++|.+++
T Consensus 43 ~L~~L~Ls~N~l~~--------~--~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK--------L--DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp CCSEEECCSSCCCE--------E--CCCCCCSSCCEEECCSSCCCE
T ss_pred CCCEEECCCCCCCc--------c--cccccCCCCCEEECCCCcccc
Confidence 45555555555444 1 233444555555555555543
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=7.1e-13 Score=117.09 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=100.0
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH
Q 013056 215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 294 (450)
Q Consensus 215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 294 (450)
-+.+++++|.++ ..+ ... ..+|++|++++|.++..... ..+..+++|++|+|++|.+++..+
T Consensus 10 ~~~l~~s~~~l~-~ip--------~~~--~~~l~~L~l~~n~i~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIP--------RDI--PLHTTELLLNDNELGRISSD-------GLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TTEEECTTSCCS-SCC--------SCC--CTTCSEEECCSCCCCSBCCS-------CSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CCEEEcCCCCcC-cCc--------cCC--CCCCCEEECCCCcCCccCCc-------cccccCCCCCEEECCCCCCCCcCH
Confidence 378999999886 222 111 34899999999998873221 136788999999999999988555
Q ss_pred HHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEE
Q 013056 295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEIL 374 (450)
Q Consensus 295 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 374 (450)
..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|+|+. ..|..+..+++|++|
T Consensus 72 ~~~-----~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 72 NAF-----EGASHIQELQLGENKIKEISN-----------KMFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSL 131 (192)
T ss_dssp TTT-----TTCTTCCEEECCSCCCCEECS-----------SSSTTCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEE
T ss_pred hHc-----CCcccCCEEECCCCcCCccCH-----------HHhcCCCCCCEEECCCCcCCe----eCHHHhhcCCCCCEE
Confidence 444 457899999999999987544 334467899999999999987 346778889999999
Q ss_pred ecCCCCCCh
Q 013056 375 DISDNTIED 383 (450)
Q Consensus 375 ~Ls~N~l~~ 383 (450)
+|++|.++.
T Consensus 132 ~L~~N~l~c 140 (192)
T 1w8a_A 132 NLASNPFNC 140 (192)
T ss_dssp ECTTCCBCC
T ss_pred EeCCCCccC
Confidence 999999864
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=3.8e-14 Score=125.94 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=97.8
Q ss_pred HHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEc
Q 013056 269 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 348 (450)
Q Consensus 269 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L 348 (450)
++..+..+++|++|++++|.+++ .+ .+. .+++|++|++++|.++. +|..+. .+++|+.|++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-----~l~~L~~L~l~~n~l~~---------l~~~~~---~~~~L~~L~L 100 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLS-----GMENLRILSLGRNLIKK---------IENLDA---VADTLEELWI 100 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHH-----HHTTCCEEEEEEEEECS---------CSSHHH---HHHHCSEEEE
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccc-----cCCCCCEEECCCCCccc---------ccchhh---cCCcCCEEEC
Confidence 34466678888888888888776 33 332 25889999999988874 223333 3367889999
Q ss_pred cCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH------HHHHH
Q 013056 349 RGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG------VSQLL 422 (450)
Q Consensus 349 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g------~~~l~ 422 (450)
++|.++. ++ .+..+++|++|++++|.+++ ++.+ ..+..+++|++|++++|.++... .....
T Consensus 101 ~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~------~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 101 SYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN------WGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp EEEECCC-----HH-HHHHHHHSSEEEESEEECCC------HHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCc-----CC-ccccCCCCCEEECCCCcCCc------hhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 9998886 55 57788889999999999887 3321 34667788999999999876641 11123
Q ss_pred HHHhcCCCCCcEEECcCCCCCcc
Q 013056 423 DTLSTLRRPPTSLSIADNNLGRF 445 (450)
Q Consensus 423 ~~l~~l~~~L~~L~L~~N~l~~~ 445 (450)
..+..++ +|+.|| +|.+++.
T Consensus 168 ~~~~~l~-~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 168 EVVKRLP-NLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHCS-SCSEEC--CGGGTTT
T ss_pred HHHHhCC-CcEEEC--CcccCHH
Confidence 3455643 488887 6777653
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=6.6e-13 Score=117.41 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=104.6
Q ss_pred eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056 247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326 (450)
Q Consensus 247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 326 (450)
-+.++++++.++.... .+ .++|++|+|++|.++. .+.. +..+++|++|+|++|.+++..+
T Consensus 12 ~~~l~~~~~~l~~ip~---------~~--~~~l~~L~L~~n~i~~-ip~~-----~~~l~~L~~L~Ls~N~i~~i~~--- 71 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK---------GI--PRDVTELYLDGNQFTL-VPKE-----LSNYKHLTLIDLSNNRISTLSN--- 71 (193)
T ss_dssp TTEEECTTSCCSSCCS---------CC--CTTCCEEECCSSCCCS-CCGG-----GGGCTTCCEEECCSSCCCCCCT---
T ss_pred CCEEEcCCCCCCcCCC---------CC--CCCCCEEECCCCcCch-hHHH-----hhcccCCCEEECCCCcCCEeCH---
Confidence 4678999998887332 11 2589999999999975 3333 2457999999999999987544
Q ss_pred cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEE
Q 013056 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVEL 406 (450)
Q Consensus 327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L 406 (450)
..+..+++|++|+|++|.|+. ..+..+..+++|++|+|++|.|+. +|. ..+..+++|++|
T Consensus 72 --------~~f~~l~~L~~L~Ls~N~l~~----i~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L 131 (193)
T 2wfh_A 72 --------QSFSNMTQLLTLILSYNRLRC----IPPRTFDGLKSLRLLSLHGNDISV------VPE--GAFNDLSALSHL 131 (193)
T ss_dssp --------TTTTTCTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECCSSCCCB------CCT--TTTTTCTTCCEE
T ss_pred --------hHccCCCCCCEEECCCCccCE----eCHHHhCCCCCCCEEECCCCCCCe------eCh--hhhhcCccccEE
Confidence 334477999999999999987 234568889999999999999987 442 457788999999
Q ss_pred EccCCCCChh-HHHHHHHHHhc
Q 013056 407 YLENCELSGR-GVSQLLDTLST 427 (450)
Q Consensus 407 ~L~~n~l~~~-g~~~l~~~l~~ 427 (450)
+|++|.+... ....+...+..
T Consensus 132 ~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 132 AIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp ECCSSCEECSGGGHHHHHHHHH
T ss_pred EeCCCCeecCCcCHHHHHHHHh
Confidence 9999987542 22334444443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.2e-12 Score=113.97 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=105.5
Q ss_pred CeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056 246 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 325 (450)
Q Consensus 246 ~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 325 (450)
..+.++++++.++..... ..++|++|++++|.+++..+.. +..+++|++|++++|.+++..+
T Consensus 8 ~~~~l~~~~~~l~~~p~~-----------~~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-- 69 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTG-----------IPSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPD-- 69 (177)
T ss_dssp ETTEEECCSSCCSSCCTT-----------CCTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCT--
T ss_pred CCCEEEecCCCCccCCCC-----------CCCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeCh--
Confidence 467889999988773321 2368999999999988643322 2457899999999999886433
Q ss_pred CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCE
Q 013056 326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVE 405 (450)
Q Consensus 326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~ 405 (450)
..+..+++|+.|+|++|.|+. ..+..+..+++|++|++++|.++. +|. ..+..+++|++
T Consensus 70 ---------~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~l~~L~~ 128 (177)
T 2o6r_A 70 ---------GVFDKLTKLTILYLHENKLQS----LPNGVFDKLTQLKELALDTNQLKS------VPD--GIFDRLTSLQK 128 (177)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCSC------CCT--TTTTTCTTCCE
T ss_pred ---------hHccCCCccCEEECCCCCccc----cCHHHhhCCcccCEEECcCCcceE------eCH--HHhcCCcccCE
Confidence 223467899999999999986 223346789999999999999986 432 44677899999
Q ss_pred EEccCCCCChhH--HHHHHHHHhc
Q 013056 406 LYLENCELSGRG--VSQLLDTLST 427 (450)
Q Consensus 406 L~L~~n~l~~~g--~~~l~~~l~~ 427 (450)
|++++|.++... ...+...+..
T Consensus 129 L~l~~N~~~~~~~~l~~l~~~~~~ 152 (177)
T 2o6r_A 129 IWLHTNPWDCSCPRIDYLSRWLNK 152 (177)
T ss_dssp EECCSSCBCCCHHHHHHHHHHHHH
T ss_pred EEecCCCeeccCccHHHHHHHHhh
Confidence 999999987642 3445555555
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=3.7e-14 Score=137.59 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=138.9
Q ss_pred ccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCe
Q 013056 168 RLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKI 247 (450)
Q Consensus 168 ~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L 247 (450)
+-+++.++++|..+ .+++++|+|++|.+....... +.++++|++|+|++|.+........ +. .+.++
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~---f~----~L~~l 81 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADV---FS----NLPKL 81 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS----STTCTTCCEEEEECCTTCCEECTTS---BC----SCTTC
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhH---hh----cchhh
Confidence 33445555566554 257899999999866543322 5788899999999998754222111 11 14555
Q ss_pred eE-EEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCC-CCCCccccc
Q 013056 248 EN-LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKY 325 (450)
Q Consensus 248 ~~-L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~ 325 (450)
++ +.++.|+++. ..+..+..+++|++|++++|.+........ ....++..|++.++ .+....+
T Consensus 82 ~~~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~l~~l~l~~~~~i~~l~~-- 146 (350)
T 4ay9_X 82 HEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKHLPDVHK-----IHSLQKVLLDIQDNINIHTIER-- 146 (350)
T ss_dssp CEEEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSSCCCCTT-----CCBSSCEEEEEESCTTCCEECT--
T ss_pred hhhhcccCCcccc--------cCchhhhhccccccccccccccccCCchhh-----cccchhhhhhhccccccccccc--
Confidence 54 5666788877 334567788999999999998876322111 22456778888664 4553221
Q ss_pred CcccHHHhhhCCCCC-CceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCC-CCCChhhHHHHHHHHHhhcCCCCCc
Q 013056 326 DRSGPLFSLGAGKSL-QSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISD-NTIEDDGIRSLIPYFVQASERCNPL 403 (450)
Q Consensus 326 ~~~~l~~~l~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-N~l~~~g~~~l~~~l~~~l~~~~~L 403 (450)
..+..+ ..++.|+|++|+|+. ++.......+|++|++++ |.++. +|. .++..+++|
T Consensus 147 ---------~~f~~~~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~------i~~--~~f~~l~~L 204 (350)
T 4ay9_X 147 ---------NSFVGLSFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEE------LPN--DVFHGASGP 204 (350)
T ss_dssp ---------TSSTTSBSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCC------CCT--TTTTTEECC
T ss_pred ---------cchhhcchhhhhhccccccccC-----CChhhccccchhHHhhccCCcccC------CCH--HHhccCccc
Confidence 122222 468889999999986 666666677899999975 67766 542 567888999
Q ss_pred CEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCC
Q 013056 404 VELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADN 440 (450)
Q Consensus 404 ~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N 440 (450)
++|+|++|+|+. ++... -.+|+.|.+.++
T Consensus 205 ~~LdLs~N~l~~-----lp~~~---~~~L~~L~~l~~ 233 (350)
T 4ay9_X 205 VILDISRTRIHS-----LPSYG---LENLKKLRARST 233 (350)
T ss_dssp SEEECTTSCCCC-----CCSSS---CTTCCEEECTTC
T ss_pred chhhcCCCCcCc-----cChhh---hccchHhhhccC
Confidence 999999999887 33211 123777776554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=109.35 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=93.5
Q ss_pred cEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHH
Q 013056 216 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 295 (450)
Q Consensus 216 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 295 (450)
+.++++++.++... .. . ..+|++|++++|.++. ++..+..+++|++|+|++|.+++..+.
T Consensus 13 ~~l~~~~~~l~~ip-----~~---~---~~~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~ 72 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-----KG---I---PRDVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQ 72 (193)
T ss_dssp TEEECTTSCCSSCC-----SC---C---CTTCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CEEEcCCCCCCcCC-----CC---C---CCCCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHh
Confidence 57888888877321 11 1 3678999999998876 335677888999999999988874443
Q ss_pred HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEE
Q 013056 296 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEIL 374 (450)
Q Consensus 296 ~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L 374 (450)
.+ ..+++|++|+|++|.+++..+ ..+..+++|+.|+|++|.|+. ++. .+..+++|+.|
T Consensus 73 ~f-----~~l~~L~~L~Ls~N~l~~i~~-----------~~f~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 73 SF-----SNMTQLLTLILSYNRLRCIPP-----------RTFDGLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHL 131 (193)
T ss_dssp TT-----TTCTTCCEEECCSSCCCBCCT-----------TTTTTCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEE
T ss_pred Hc-----cCCCCCCEEECCCCccCEeCH-----------HHhCCCCCCCEEECCCCCCCe-----eChhhhhcCccccEE
Confidence 33 457889999999999887544 233467889999999999886 444 47788899999
Q ss_pred ecCCCCCC
Q 013056 375 DISDNTIE 382 (450)
Q Consensus 375 ~Ls~N~l~ 382 (450)
+|++|.+.
T Consensus 132 ~L~~N~~~ 139 (193)
T 2wfh_A 132 AIGANPLY 139 (193)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCee
Confidence 99999874
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.7e-11 Score=106.60 Aligned_cols=129 Identities=15% Similarity=0.133 Sum_probs=78.5
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHH
Q 013056 215 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 294 (450)
Q Consensus 215 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 294 (450)
.+.++++++.++... .. . ..+|++|++++|.++. .....+..+++|++|++++|.+++..+
T Consensus 9 ~~~l~~~~~~l~~~p-----~~---~---~~~l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-----TG---I---PSSATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp TTEEECCSSCCSSCC-----TT---C---CTTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCEEEecCCCCccCC-----CC---C---CCCCcEEEeCCCcccE--------eCHHHhcCcccccEEECCCCcceEeCh
Confidence 456777777666311 00 1 3567777777777765 223345566777777777777765322
Q ss_pred HHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHH-hhcCCCCCE
Q 013056 295 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSA-LVHIPNLEI 373 (450)
Q Consensus 295 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~ 373 (450)
.. +..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++. ++.. +..+++|++
T Consensus 70 ~~-----~~~l~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 70 GV-----FDKLTKLTILYLHENKLQSLPN-----------GVFDKLTQLKELALDTNQLKS-----VPDGIFDRLTSLQK 128 (177)
T ss_dssp TT-----TTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCSC-----CCTTTTTTCTTCCE
T ss_pred hH-----ccCCCccCEEECCCCCccccCH-----------HHhhCCcccCEEECcCCcceE-----eCHHHhcCCcccCE
Confidence 21 2346777777777777775332 122355677777777777764 3333 456777777
Q ss_pred EecCCCCCCh
Q 013056 374 LDISDNTIED 383 (450)
Q Consensus 374 L~Ls~N~l~~ 383 (450)
|+|++|.++.
T Consensus 129 L~l~~N~~~~ 138 (177)
T 2o6r_A 129 IWLHTNPWDC 138 (177)
T ss_dssp EECCSSCBCC
T ss_pred EEecCCCeec
Confidence 7777777754
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.7e-13 Score=121.70 Aligned_cols=139 Identities=25% Similarity=0.259 Sum_probs=105.1
Q ss_pred hhcCCCCCCEEecCCCCCChhHHH------HHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeE
Q 013056 272 FLSSGRSLCSLKLRHCHLDRDFGR------MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 345 (450)
Q Consensus 272 ~l~~~~~L~~L~Ls~n~l~~~~~~------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~ 345 (450)
.+.....++.++++.+.+.+..+. .+ ..+++|++|++++|.+++ +| .+. .+++|+.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~-----~~l~~L~~L~ls~n~l~~---------l~-~~~---~l~~L~~ 74 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATL-----STLKACKHLALSTNNIEK---------IS-SLS---GMENLRI 74 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHH-----HHTTTCSEEECSEEEESC---------CC-CHH---HHTTCCE
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHH-----hcCCCCCEEECCCCCCcc---------cc-ccc---cCCCCCE
Confidence 345566777777777766665433 44 237999999999999886 33 334 4589999
Q ss_pred EEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHH
Q 013056 346 LNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTL 425 (450)
Q Consensus 346 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l 425 (450)
|++++|.|+. +|..+..+++|++|++++|++++ +|. +..+++|++|++++|.|+..+. ...+
T Consensus 75 L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~------l~~----~~~l~~L~~L~l~~N~i~~~~~---~~~l 136 (198)
T 1ds9_A 75 LSLGRNLIKK-----IENLDAVADTLEELWISYNQIAS------LSG----IEKLVNLRVLYMSNNKITNWGE---IDKL 136 (198)
T ss_dssp EEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCC------HHH----HHHHHHSSEEEESEEECCCHHH---HHHH
T ss_pred EECCCCCccc-----ccchhhcCCcCCEEECcCCcCCc------CCc----cccCCCCCEEECCCCcCCchhH---HHHH
Confidence 9999999985 67777778999999999999987 443 3445899999999999998432 1356
Q ss_pred hcCCCCCcEEECcCCCCCcccc
Q 013056 426 STLRRPPTSLSIADNNLGRFCA 447 (450)
Q Consensus 426 ~~l~~~L~~L~L~~N~l~~~~~ 447 (450)
..+ .+|++|++++|++++..|
T Consensus 137 ~~l-~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 137 AAL-DKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp TTT-TTCSEEEECSCHHHHHHH
T ss_pred hcC-CCCCEEEecCCccccccc
Confidence 664 449999999999977644
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=3.3e-12 Score=122.67 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCC-EEecCCCCCC
Q 013056 304 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLE-ILDISDNTIE 382 (450)
Q Consensus 304 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~N~l~ 382 (450)
.+++|+.|+|++|.++...+ ..|.+|.+|+.|+|..| ++.-+ ..+|..+++|+ .+++.+ .++
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~-----------~aF~~~~~L~~l~l~~n-i~~I~----~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPD-----------FTFAQKKYLLKIKLPHN-LKTIG----QRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp HCTTCCEEECTTBCCCEECT-----------TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEEEECT-TCC
T ss_pred hcCCCeEEECCCCCcceecH-----------hhhhCCCCCCEEECCcc-cceeh----HHHhhCChhccEEEEEcc-cce
Confidence 37899999999988876443 44557889999999887 66521 34578888999 999987 565
Q ss_pred hhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEEC
Q 013056 383 DDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSI 437 (450)
Q Consensus 383 ~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L 437 (450)
. ++. .+|..|++|+.|++++|.++..+ ..++.. ..+|+.++.
T Consensus 287 ~------I~~--~aF~~c~~L~~l~l~~n~i~~I~----~~aF~~-~~~L~~ly~ 328 (329)
T 3sb4_A 287 A------IEF--GAFMGCDNLRYVLATGDKITTLG----DELFGN-GVPSKLIYK 328 (329)
T ss_dssp E------ECT--TTTTTCTTEEEEEECSSCCCEEC----TTTTCT-TCCCCEEEC
T ss_pred E------Ech--hhhhCCccCCEEEeCCCccCccc----hhhhcC-Ccchhhhcc
Confidence 4 222 67888899999999999888752 234555 344887753
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.14 E-value=4.4e-11 Score=102.60 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=77.9
Q ss_pred CCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCC-CCCh
Q 013056 306 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIED 383 (450)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~ 383 (450)
..|+.||+++|.+++ .++..+..|++|++|+|++| .|++.|++.|...-..+++|++|+|++| +|||
T Consensus 61 ~~L~~LDLs~~~Itd-----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCG-----------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccH-----------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 568999999998886 44555567899999999999 6999998877542112357999999997 5999
Q ss_pred hhHHHHHHHHHhhcCCCCCcCEEEccCCC-CChhH--HHHHHHHHhc
Q 013056 384 DGIRSLIPYFVQASERCNPLVELYLENCE-LSGRG--VSQLLDTLST 427 (450)
Q Consensus 384 ~g~~~l~~~l~~~l~~~~~L~~L~L~~n~-l~~~g--~~~l~~~l~~ 427 (450)
.|+.++. .+++|++|+|++|. +|+.| +..+-+.+..
T Consensus 130 ~Gl~~L~--------~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~ 168 (176)
T 3e4g_A 130 KGIIALH--------HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS 168 (176)
T ss_dssp HHHHHGG--------GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHh--------cCCCCCEEECCCCCCCCchHHHHHHHHHHCCC
Confidence 9987762 35899999999996 88866 3445555444
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=4.6e-11 Score=103.21 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=78.5
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
+.+.+++++|.++. .+..+ ..+|++|+|++|.+++..+ .. +..+++|++|+|++|+|+.
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~-------~~~l~~L~L~~N~i~~~~~--------~~---~~~l~~L~~L~Ls~N~l~~-- 68 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI-------PTTTQVLYLYDNQITKLEP--------GV---FDRLTQLTRLDLDNNQLTV-- 68 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TT---TTTCTTCSEEECCSSCCCC--
T ss_pred CCCEEEeCCCCcCc-cCccC-------CCCCcEEEcCCCcCCccCh--------hh---hcCcccCCEEECCCCCcCc--
Confidence 34677777777665 33322 3677888888887776444 22 3356778888888888875
Q ss_pred HHHHHH-HhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--HHHHHHHHHhc
Q 013056 358 ARDLGS-ALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST 427 (450)
Q Consensus 358 ~~~l~~-~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~~~l~~ 427 (450)
++. .+..+++|++|+|++|+|+. ++. ..+..+++|++|+|++|.++.. .+..+...+..
T Consensus 69 ---l~~~~f~~l~~L~~L~L~~N~l~~------~~~--~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 69 ---LPAGVFDKLTQLTQLSLNDNQLKS------IPR--GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred ---cChhhccCCCCCCEEECCCCccCE------eCH--HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence 443 35678888888888888876 331 3467778888888888887654 34555666655
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=2.9e-11 Score=104.41 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=87.4
Q ss_pred CCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhH
Q 013056 307 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGI 386 (450)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~ 386 (450)
+.+++++++|.++. +|..+. ++|+.|+|++|.|+. ..+..+..+++|++|+|++|+|+.
T Consensus 10 ~~~~l~~s~n~l~~---------ip~~~~-----~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~--- 68 (170)
T 3g39_A 10 SGTTVDCSGKSLAS---------VPTGIP-----TTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTV--- 68 (170)
T ss_dssp ETTEEECTTSCCSS---------CCSCCC-----TTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCC---
T ss_pred CCCEEEeCCCCcCc---------cCccCC-----CCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCc---
Confidence 57899999999886 333332 789999999999997 236678899999999999999987
Q ss_pred HHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCccc
Q 013056 387 RSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGRFC 446 (450)
Q Consensus 387 ~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~~~ 446 (450)
++. ..+..+++|++|+|++|+|+.. ....+..+ .+|++|+|++|++....
T Consensus 69 ---l~~--~~f~~l~~L~~L~L~~N~l~~~----~~~~~~~l-~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 69 ---LPA--GVFDKLTQLTQLSLNDNQLKSI----PRGAFDNL-KSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp ---CCT--TTTTTCTTCCEEECCSSCCCCC----CTTTTTTC-TTCCEEECCSSCBCTTB
T ss_pred ---cCh--hhccCCCCCCEEECCCCccCEe----CHHHhcCC-CCCCEEEeCCCCCCCCc
Confidence 442 4578889999999999999873 23346664 44999999999998654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=6e-11 Score=102.87 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=92.5
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 278 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 278 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
.-+.+++++|.++. .|..+ ..+|++|+|++|.+.+..+ .. +..+++|+.|+|++|+|+.
T Consensus 13 ~~~~l~~~~n~l~~-iP~~~-------~~~L~~L~Ls~N~l~~~~~--------~~---~~~l~~L~~L~Ls~N~l~~-- 71 (174)
T 2r9u_A 13 DQTLVNCQNIRLAS-VPAGI-------PTDKQRLWLNNNQITKLEP--------GV---FDHLVNLQQLYFNSNKLTA-- 71 (174)
T ss_dssp CSSEEECCSSCCSS-CCSCC-------CTTCSEEECCSSCCCCCCT--------TT---TTTCTTCCEEECCSSCCCC--
T ss_pred CCcEEEeCCCCCCc-cCCCc-------CCCCcEEEeCCCCccccCH--------HH---hcCCcCCCEEECCCCCCCc--
Confidence 34889999999976 55433 4889999999999997544 33 3467899999999999996
Q ss_pred HHHHHHH-hhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh--HHHHHHHHHhc
Q 013056 358 ARDLGSA-LVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR--GVSQLLDTLST 427 (450)
Q Consensus 358 ~~~l~~~-l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~--g~~~l~~~l~~ 427 (450)
++.. +..+++|++|+|++|+|+. +|. ..+..+++|++|+|++|.+... .+..+...+..
T Consensus 72 ---i~~~~~~~l~~L~~L~L~~N~l~~------l~~--~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~ 133 (174)
T 2r9u_A 72 ---IPTGVFDKLTQLTQLDLNDNHLKS------IPR--GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD 133 (174)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCCC------CCT--TTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred ---cChhHhCCcchhhEEECCCCccce------eCH--HHhccccCCCEEEeCCCCcccccccHHHHHHHHHh
Confidence 5554 5789999999999999987 442 4578889999999999998754 34455666655
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=1.3e-10 Score=100.73 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=81.2
Q ss_pred eeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccC
Q 013056 247 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 326 (450)
Q Consensus 247 L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~ 326 (450)
-+.+++++|.++... ..+ .++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+
T Consensus 14 ~~~l~~~~n~l~~iP---------~~~--~~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~i~~--- 74 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP---------AGI--PTDKQRLWLNNNQITKLEPGVF-----DHLVNLQQLYFNSNKLTAIPT--- 74 (174)
T ss_dssp SSEEECCSSCCSSCC---------SCC--CTTCSEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCT---
T ss_pred CcEEEeCCCCCCccC---------CCc--CCCCcEEEeCCCCccccCHHHh-----cCCcCCCEEECCCCCCCccCh---
Confidence 478899999987732 222 2789999999999987544433 457899999999999987433
Q ss_pred cccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCCCh
Q 013056 327 RSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 327 ~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l~~ 383 (450)
..+..+++|+.|+|++|+|+. ++. .+..+++|++|+|++|.+..
T Consensus 75 --------~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 75 --------GVFDKLTQLTQLDLNDNHLKS-----IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp --------TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred --------hHhCCcchhhEEECCCCccce-----eCHHHhccccCCCEEEeCCCCccc
Confidence 223467899999999999986 555 47889999999999999864
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=1.4e-10 Score=111.30 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=118.8
Q ss_pred CCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCC------
Q 013056 184 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF------ 257 (450)
Q Consensus 184 ~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i------ 257 (450)
+++|++|+|.+ .+...... .+.+|++|+.|++++|.+...+..++.. +.++..+.++....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~--------~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALAD--------SVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCT--------TTCEEEECTTCTHHHHTSTT
T ss_pred cCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcC--------CCceEEecCcchhhhhcccc
Confidence 78999999987 43332222 2678889999999988775444333322 34455554443110
Q ss_pred -CCC---------------CchhhHH------------------------HHHHhhcCCCCCCEEecCCCCCChhHHHHH
Q 013056 258 -IEN---------------CPSSVVV------------------------ELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 297 (450)
Q Consensus 258 -~~~---------------~~~~~~~------------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 297 (450)
... ....+.+ ........+++|++|+|++|+++..+...
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a- 245 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT- 245 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-
Confidence 000 0000000 11122224899999999999887743332
Q ss_pred HHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCcee-EEEccCCCCChhhHHHHHHHhhcCCCCCEEec
Q 013056 298 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRGNNLCKADARDLGSALVHIPNLEILDI 376 (450)
Q Consensus 298 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 376 (450)
+..+.+|+.|+|..| +....+ ..|.+|.+|+ .+++.. +++.-+ +.+|..+++|+.|++
T Consensus 246 ----F~~~~~L~~l~l~~n-i~~I~~-----------~aF~~~~~L~~~l~l~~-~l~~I~----~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 246 ----FAQKKYLLKIKLPHN-LKTIGQ-----------RVFSNCGRLAGTLELPA-SVTAIE----FGAFMGCDNLRYVLA 304 (329)
T ss_dssp ----TTTCTTCCEEECCTT-CCEECT-----------TTTTTCTTCCEEEEECT-TCCEEC----TTTTTTCTTEEEEEE
T ss_pred ----hhCCCCCCEEECCcc-cceehH-----------HHhhCChhccEEEEEcc-cceEEc----hhhhhCCccCCEEEe
Confidence 456899999999998 654333 4556889999 999988 666521 356889999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhcCCCCCcCEEEc
Q 013056 377 SDNTIEDDGIRSLIPYFVQASERCNPLVELYL 408 (450)
Q Consensus 377 s~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L 408 (450)
++|.++. ++. .+|..+++|+.++.
T Consensus 305 ~~n~i~~------I~~--~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 305 TGDKITT------LGD--ELFGNGVPSKLIYK 328 (329)
T ss_dssp CSSCCCE------ECT--TTTCTTCCCCEEEC
T ss_pred CCCccCc------cch--hhhcCCcchhhhcc
Confidence 9999877 432 67899999999863
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.80 E-value=3.4e-09 Score=90.81 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=23.2
Q ss_pred ceeEEEccCC-CCChhhHHHHHHHhhcCCCCCEEecCCC-CCChhh
Q 013056 342 SLRLLNLRGN-NLCKADARDLGSALVHIPNLEILDISDN-TIEDDG 385 (450)
Q Consensus 342 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~N-~l~~~g 385 (450)
+|+.|+|++| +||+.|+.. +.++++|++|+|+++ .+++.|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~----L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA----LHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH----GGGCTTCCEEEEESCTTCCCHH
T ss_pred CCCEEEcCCCCcCCHHHHHH----HhcCCCCCEEECCCCCCCCchH
Confidence 4566666665 466666544 334566666666665 356655
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5.8e-09 Score=100.57 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=85.8
Q ss_pred CEEecCCC-CCChhHHHHHHHHHhhCCCCCcEEeccC-CCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhh
Q 013056 280 CSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKAD 357 (450)
Q Consensus 280 ~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~ 357 (450)
..++.+++ .++. .|. + ..+.+|++|+|++ |.+++..+ ..+ ..+++|+.|+|++|+|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l-----~~~~~L~~L~l~~~n~l~~~~~--------~~~---~~l~~L~~L~l~~N~l~~-- 70 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-L-----PGAENLTELYIENQQHLQHLEL--------RDL---RGLGELRNLTIVKSGLRF-- 70 (347)
T ss_dssp SCEECCSSCCCTT-TTT-S-----CSCSCCSEEECCSCSSCCEECG--------GGS---CSCCCCSEEECCSSCCCE--
T ss_pred CEEEcCCCCCCCc-cCC-C-----CCCCCeeEEEccCCCCCCCcCh--------hHh---ccccCCCEEECCCCccce--
Confidence 56789888 8877 554 4 4578899999996 99987444 334 467999999999999997
Q ss_pred HHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH-HHHHHHHHh
Q 013056 358 ARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG-VSQLLDTLS 426 (450)
Q Consensus 358 ~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g-~~~l~~~l~ 426 (450)
..+..|..+++|+.|+|++|+|+. +|. ..+..++ |+.|+|++|.+.... ...+...+.
T Consensus 71 --~~~~~~~~l~~L~~L~l~~N~l~~------~~~--~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 71 --VAPDAFHFTPRLSRLNLSFNALES------LSW--KTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp --ECTTGGGSCSCCCEEECCSSCCSC------CCS--TTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred --eCHHHhcCCcCCCEEeCCCCccce------eCH--HHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence 345578899999999999999987 442 3444444 999999999987532 233444443
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=1.3e-08 Score=98.08 Aligned_cols=105 Identities=21% Similarity=0.115 Sum_probs=81.6
Q ss_pred eEEEcCCC-CCCCCCchhhHHHHHHhhcCCCCCCEEecCC-CCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCccccc
Q 013056 248 ENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 325 (450)
Q Consensus 248 ~~L~L~~n-~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 325 (450)
..++.+++ .++. ++. +..+++|++|+|++ |.++...+..+ ..+++|++|+|++|.|++..+
T Consensus 11 ~~v~~~~~n~l~~---------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~-- 73 (347)
T 2ifg_A 11 SGLRCTRDGALDS---------LHH-LPGAENLTELYIENQQHLQHLELRDL-----RGLGELRNLTIVKSGLRFVAP-- 73 (347)
T ss_dssp SCEECCSSCCCTT---------TTT-SCSCSCCSEEECCSCSSCCEECGGGS-----CSCCCCSEEECCSSCCCEECT--
T ss_pred CEEEcCCCCCCCc---------cCC-CCCCCCeeEEEccCCCCCCCcChhHh-----ccccCCCEEECCCCccceeCH--
Confidence 45688887 7776 555 88889999999996 99987544333 558999999999999997544
Q ss_pred CcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCCh
Q 013056 326 DRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIED 383 (450)
Q Consensus 326 ~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~ 383 (450)
..+. .+++|+.|+|++|+|+. +|..+.....|+.|+|++|.+.-
T Consensus 74 ------~~~~---~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 74 ------DAFH---FTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp ------TGGG---SCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred ------HHhc---CCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 4445 67899999999999986 55544444449999999999863
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=6.7e-09 Score=102.17 Aligned_cols=223 Identities=10% Similarity=0.064 Sum_probs=126.4
Q ss_pred chhhcccccCcchhhhHhhhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhcccc
Q 013056 163 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 242 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 242 (450)
.++.+.+.++ +..+....+...+|+.+.+..+- .... ...+.+|++|+.+++++|.++.....++.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l-~~I~----~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-------- 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTL-EQLK----EDIFYYCYNLKKADLSKTKITKLPASTFV-------- 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCTTC-CEEC----SSTTTTCTTCCEEECTTSCCSEECTTTTT--------
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCCCc-cEeh----HHHhhCcccCCeeecCCCcceEechhhEe--------
Confidence 4444455443 33444444434568888886532 1111 11256788888888888777654433332
Q ss_pred CCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcc
Q 013056 243 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 322 (450)
Q Consensus 243 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 322 (450)
+.+|+.+.+..+ ++.. -...|.++++|+.+++..+ ++..+... +.. ++|+.+.+.. .+....
T Consensus 202 -~~~L~~l~lp~~-l~~I--------~~~aF~~~~~L~~l~l~~~-l~~I~~~a-----F~~-~~L~~i~lp~-~i~~I~ 263 (401)
T 4fdw_A 202 -YAGIEEVLLPVT-LKEI--------GSQAFLKTSQLKTIEIPEN-VSTIGQEA-----FRE-SGITTVKLPN-GVTNIA 263 (401)
T ss_dssp -TCCCSEEECCTT-CCEE--------CTTTTTTCTTCCCEECCTT-CCEECTTT-----TTT-CCCSEEEEET-TCCEEC
T ss_pred -ecccCEEEeCCc-hhee--------hhhHhhCCCCCCEEecCCC-ccCccccc-----ccc-CCccEEEeCC-CccEEC
Confidence 467888888744 4442 2235667788888888764 33322222 233 6788887743 333322
Q ss_pred cccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHH-HHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 323 SKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL-GSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 323 ~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
. ..|.+|++|+.+++.+|.+.......+ ..++..+++|+.++|.. .++. ++. .+|..|.
T Consensus 264 ~-----------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~------I~~--~aF~~c~ 323 (401)
T 4fdw_A 264 S-----------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI------LGQ--GLLGGNR 323 (401)
T ss_dssp T-----------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE------ECT--TTTTTCC
T ss_pred h-----------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE------Ehh--hhhcCCC
Confidence 2 344567788888887776541111011 23566777888888873 3544 221 5677777
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCCCc
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNLGR 444 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l~~ 444 (450)
+|+.++|..+ ++..+ ..++..+ +|+.+++.+|.+..
T Consensus 324 ~L~~l~lp~~-l~~I~----~~aF~~~--~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQIN----FSAFNNT--GIKEVKVEGTTPPQ 359 (401)
T ss_dssp SCCEEEECTT-CCEEC----TTSSSSS--CCCEEEECCSSCCB
T ss_pred CccEEEECcc-ccEEc----HHhCCCC--CCCEEEEcCCCCcc
Confidence 8888888544 54432 2234442 48888887776543
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=1.6e-08 Score=99.40 Aligned_cols=224 Identities=8% Similarity=0.023 Sum_probs=142.4
Q ss_pred chhhcccccCcchhhhHh-hhcCCCccEEEeecccChHHHHHHHHHHHhcCCCccEEEccCCCCChhHHHHHHHHHhccc
Q 013056 163 YARCLRLQNALCVEETCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 241 (450)
Q Consensus 163 ~l~~l~L~~~~~~~~~~~-l~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 241 (450)
.++.+.+.+ .+..+... +.+|.+|+.+++++|.+....... +. +.+|+.+.|..+ +...+..++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~------ 224 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLK------ 224 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTT------
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhC------
Confidence 455555554 33344433 448899999999988755443332 33 579999999855 55444334433
Q ss_pred cCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCc
Q 013056 242 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 321 (450)
Q Consensus 242 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~ 321 (450)
|.+|+.+.+..+ ++..+. .+|.+ .+|+.+.+.. .+...+.. .+..|.+|+.+++.+|.+...
T Consensus 225 --~~~L~~l~l~~~-l~~I~~--------~aF~~-~~L~~i~lp~-~i~~I~~~-----aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 225 --TSQLKTIEIPEN-VSTIGQ--------EAFRE-SGITTVKLPN-GVTNIASR-----AFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp --CTTCCCEECCTT-CCEECT--------TTTTT-CCCSEEEEET-TCCEECTT-----TTTTCTTCCEEEEESSCCCCC
T ss_pred --CCCCCEEecCCC-ccCccc--------ccccc-CCccEEEeCC-CccEEChh-----HhhCCCCCCEEEeCCccccCC
Confidence 788999999875 444222 23334 7899999954 44442222 245689999999998876410
Q ss_pred ccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCC
Q 013056 322 LSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCN 401 (450)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~ 401 (450)
. ...++. ..|..|++|+.++|.. .++.-+ ..++..+++|+.++|..| ++. ++. .+|..+
T Consensus 287 ~----~~~I~~--~aF~~c~~L~~l~l~~-~i~~I~----~~aF~~c~~L~~l~lp~~-l~~------I~~--~aF~~~- 345 (401)
T 4fdw_A 287 P----EAMIHP--YCLEGCPKLARFEIPE-SIRILG----QGLLGGNRKVTQLTIPAN-VTQ------INF--SAFNNT- 345 (401)
T ss_dssp T----TCEECT--TTTTTCTTCCEECCCT-TCCEEC----TTTTTTCCSCCEEEECTT-CCE------ECT--TSSSSS-
T ss_pred c----ccEECH--HHhhCCccCCeEEeCC-ceEEEh----hhhhcCCCCccEEEECcc-ccE------EcH--HhCCCC-
Confidence 0 000101 4455889999999984 466522 245778899999999765 544 221 678888
Q ss_pred CcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCCC
Q 013056 402 PLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNNL 442 (450)
Q Consensus 402 ~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~l 442 (450)
+|+.+++++|.+... ....+..++.+++.|.+..+.+
T Consensus 346 ~L~~l~l~~n~~~~l----~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQV----FEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCCEEEECCSSCCBC----CCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCEEEEcCCCCccc----ccccccCCCCCccEEEeCHHHH
Confidence 999999999987663 1233445445688888876543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=1.1e-06 Score=80.75 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=39.9
Q ss_pred EecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHH
Q 013056 282 LKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDL 361 (450)
Q Consensus 282 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l 361 (450)
++++.|... ....+......++++|++|+|++|.+++..+ ++..+. .+++|+.|+|++|+|++.
T Consensus 148 l~l~~N~~~--~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~------l~~~~~---~l~~L~~L~Ls~N~i~~~----- 211 (267)
T 3rw6_A 148 IDVVLNRRS--CMAATLRIIEENIPELLSLNLSNNRLYRLDD------MSSIVQ---KAPNLKILNLSGNELKSE----- 211 (267)
T ss_dssp CCCCTTSHH--HHHHHHHHHHHHCTTCCEEECTTSCCCCCGG------GTTHHH---HSTTCCEEECTTSCCCSG-----
T ss_pred ccccCCHHH--HHHHHHHHHHhhCCCCCEEECCCCCCCCCcc------chhHHh---hCCCCCEEECCCCccCCc-----
Confidence 455555421 2222333333446777777777777765211 222223 235555555555555541
Q ss_pred HHHhhcCC--CCCEEecCCCCCC
Q 013056 362 GSALVHIP--NLEILDISDNTIE 382 (450)
Q Consensus 362 ~~~l~~~~--~L~~L~Ls~N~l~ 382 (450)
..+..++ +|++|+|++|.+.
T Consensus 212 -~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 212 -RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp -GGGGGGTTSCCSEEECTTSTTG
T ss_pred -hhhhhcccCCcceEEccCCcCc
Confidence 1122222 5555555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=8.3e-06 Score=74.93 Aligned_cols=86 Identities=34% Similarity=0.441 Sum_probs=61.2
Q ss_pred cCCCCCCEEecCCCCCCh--hHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCC
Q 013056 274 SSGRSLCSLKLRHCHLDR--DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGN 351 (450)
Q Consensus 274 ~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n 351 (450)
..+++|++|+|++|++++ ..+..+ ..+++|+.|+|++|.+.+. ..+..+..+ +|++|+|++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-----~~l~~L~~L~Ls~N~i~~~----------~~l~~l~~l-~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-----QKAPNLKILNLSGNELKSE----------RELDKIKGL-KLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-----HHSTTCCEEECTTSCCCSG----------GGGGGGTTS-CCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-----hhCCCCCEEECCCCccCCc----------hhhhhcccC-CcceEEccCC
Confidence 467889999999998876 222222 2378999999999999873 234444445 8999999999
Q ss_pred CCChh---hHHHHHHHhhcCCCCCEEe
Q 013056 352 NLCKA---DARDLGSALVHIPNLEILD 375 (450)
Q Consensus 352 ~l~~~---~~~~l~~~l~~~~~L~~L~ 375 (450)
.+... ........+..+|+|+.||
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCccccCcchhHHHHHHHHCcccCeEC
Confidence 98751 1123455677889999887
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.97 E-value=0.00031 Score=68.55 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhH
Q 013056 338 KSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRG 417 (450)
Q Consensus 338 ~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g 417 (450)
..+.+|+.+.+..+ ++.-| ..++..+.+|+.++|..+ ++. ++. .+|..|.+|+.+++..+ ++..|
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~------I~~--~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIG----EEAFESCTSLVSIDLPYL-VEE------IGK--RSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTCTTCCEEEECTT-CCEEC----TTTTTTCTTCCEECCCTT-CCE------ECT--TTTTTCTTCCEECCCTT-CCEEC
T ss_pred cccccccccccccc-cceec----hhhhcCCCCCCEEEeCCc-ccE------EhH--HhccCCCCCCEEEECcc-ccEeh
Confidence 35667777777544 33211 224666777777777643 333 111 45677777777777655 44432
Q ss_pred HHHHHHHHhcCCCCCcEEECcCC
Q 013056 418 VSQLLDTLSTLRRPPTSLSIADN 440 (450)
Q Consensus 418 ~~~l~~~l~~l~~~L~~L~L~~N 440 (450)
..++.. ..+|+.+++..+
T Consensus 359 ----~~aF~~-C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ----ANAFQG-CINLKKVELPKR 376 (394)
T ss_dssp ----TTTBTT-CTTCCEEEEEGG
T ss_pred ----HHHhhC-CCCCCEEEECCC
Confidence 123444 344777776543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.80 E-value=0.0034 Score=61.06 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=67.1
Q ss_pred hcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCC
Q 013056 273 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNN 352 (450)
Q Consensus 273 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~ 352 (450)
+..+..++.+....+.+... .+..+.+|+.+.+..+ +..... ..+.+|.+|+.+++..+
T Consensus 272 F~~~~~l~~~~~~~~~i~~~--------~F~~~~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPEK--------TFYGCSSLTEVKLLDS-VKFIGE-----------EAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp TTTCTTCCEEEECSSEECTT--------TTTTCTTCCEEEECTT-CCEECT-----------TTTTTCTTCCEECCCTT-
T ss_pred cccccccceeccCceeeccc--------cccccccccccccccc-cceech-----------hhhcCCCCCCEEEeCCc-
Confidence 34455666665554433321 1344678888888654 332222 34557889999999754
Q ss_pred CChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCC
Q 013056 353 LCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENC 411 (450)
Q Consensus 353 l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n 411 (450)
++.-| ..++.++.+|+.+++..| ++. ++. .+|..|.+|+.+++..+
T Consensus 331 v~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIG----KRSFRGCTSLSNINFPLS-LRK------IGA--NAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEEC----TTTTTTCTTCCEECCCTT-CCE------ECT--TTBTTCTTCCEEEEEGG
T ss_pred ccEEh----HHhccCCCCCCEEEECcc-ccE------ehH--HHhhCCCCCCEEEECCC
Confidence 55421 245788999999999876 544 221 67899999999999765
No 159
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=95.78 E-value=0.005 Score=40.94 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=29.8
Q ss_pred cchhhccCchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHh
Q 013056 16 VIPYVYELPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK 80 (450)
Q Consensus 16 ~~~~~~~lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~ 80 (450)
.-+.+..||.|++..||++||+..+ .++...++.|+++..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl-------------------------~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPEL-------------------------LKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGH-------------------------HHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHH-------------------------HHHHHHHHHHHHHhC
Confidence 3456789999999999999997776 345567888988774
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.37 E-value=0.015 Score=56.49 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=79.7
Q ss_pred HhhcCCCCCCEEecCCCCCChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccC
Q 013056 271 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRG 350 (450)
Q Consensus 271 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~ 350 (450)
..+.++..|+.+.+..+... .+. ..+..+..|+.+.+... +..... ..|.+|.+|+.+++..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~-----~aF~~c~~L~~i~l~~~-i~~I~~-----------~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGT-----GAFMNCPALQDIEFSSR-ITELPE-----------SVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECT-----TTTTTCTTCCEEECCTT-CCEECT-----------TTTTTCTTCCEEECCT
T ss_pred ceeeecccccEEecccccce-ecC-----cccccccccccccCCCc-ccccCc-----------eeecCCCCcCEEEeCC
Confidence 34667889999999765321 111 22355789999999643 332222 4455789999999976
Q ss_pred CCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCC
Q 013056 351 NNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRR 430 (450)
Q Consensus 351 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~ 430 (450)
+ ++.-| ..++..+.+|+.+.|..+ ++. +.. .+|..|.+|+.+++.++.. ...++.. ..
T Consensus 321 ~-v~~I~----~~aF~~C~~L~~i~ip~s-v~~------I~~--~aF~~C~~L~~i~~~~~~~-------~~~~~~~-~~ 378 (394)
T 4gt6_A 321 G-ITQIL----DDAFAGCEQLERIAIPSS-VTK------IPE--SAFSNCTALNNIEYSGSRS-------QWNAIST-DS 378 (394)
T ss_dssp T-CCEEC----TTTTTTCTTCCEEEECTT-CCB------CCG--GGGTTCTTCCEEEESSCHH-------HHHTCBC-CC
T ss_pred c-ccEeh----HhHhhCCCCCCEEEECcc-cCE------EhH--hHhhCCCCCCEEEECCcee-------ehhhhhc-cC
Confidence 5 44311 235788999999999754 433 111 6789999999999998742 2244555 55
Q ss_pred CCcEEECcCCCCC
Q 013056 431 PPTSLSIADNNLG 443 (450)
Q Consensus 431 ~L~~L~L~~N~l~ 443 (450)
.|+.+.+..|.+.
T Consensus 379 ~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 379 GLQNLPVAPGSID 391 (394)
T ss_dssp CC-----------
T ss_pred CCCEEEeCCCCEE
Confidence 6999988777553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.36 E-value=0.0069 Score=48.91 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=18.4
Q ss_pred CceeEEEccCCCCChhhHHHHHH-HhhcCCCCCEEecCCCCC
Q 013056 341 QSLRLLNLRGNNLCKADARDLGS-ALVHIPNLEILDISDNTI 381 (450)
Q Consensus 341 ~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~N~l 381 (450)
.+|+.|+|++|+|+. |+. .+..+++|+.|+|++|.+
T Consensus 31 ~~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCc-----cChhhhhhccccCEEEecCCCe
Confidence 345555555555554 322 234455555555555554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.32 E-value=0.033 Score=53.99 Aligned_cols=107 Identities=13% Similarity=0.205 Sum_probs=59.6
Q ss_pred hCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCC
Q 013056 303 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIE 382 (450)
Q Consensus 303 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~ 382 (450)
..+..|+.+.+..+... ... ..+.++..|+.+.+.. .++.-+ ..++..+.+|+.++|..+ ++
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~-----------~aF~~c~~L~~i~l~~-~i~~I~----~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGT-----------GAFMNCPALQDIEFSS-RITELP----ESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECT-----------TTTTTCTTCCEEECCT-TCCEEC----TTTTTTCTTCCEEECCTT-CC
T ss_pred eecccccEEecccccce-ecC-----------cccccccccccccCCC-cccccC----ceeecCCCCcCEEEeCCc-cc
Confidence 44677777777654321 111 3344667777777753 333311 124667778888887654 32
Q ss_pred hhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChhHHHHHHHHHhcCCCCCcEEECcCCC
Q 013056 383 DDGIRSLIPYFVQASERCNPLVELYLENCELSGRGVSQLLDTLSTLRRPPTSLSIADNN 441 (450)
Q Consensus 383 ~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~l~~l~~~L~~L~L~~N~ 441 (450)
. +.. .+|..|.+|+.+.+..+ ++..| ..++.. ..+|+.+++.+|.
T Consensus 324 ~------I~~--~aF~~C~~L~~i~ip~s-v~~I~----~~aF~~-C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 324 Q------ILD--DAFAGCEQLERIAIPSS-VTKIP----ESAFSN-CTALNNIEYSGSR 368 (394)
T ss_dssp E------ECT--TTTTTCTTCCEEEECTT-CCBCC----GGGGTT-CTTCCEEEESSCH
T ss_pred E------ehH--hHhhCCCCCCEEEECcc-cCEEh----HhHhhC-CCCCCEEEECCce
Confidence 2 111 45777778888877544 44422 123444 3457888777653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.28 E-value=0.0056 Score=49.42 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=49.0
Q ss_pred eEEEccCCCCC--hhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccCCCCChh-HHHH
Q 013056 344 RLLNLRGNNLC--KADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLENCELSGR-GVSQ 420 (450)
Q Consensus 344 ~~L~L~~n~l~--~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~n~l~~~-g~~~ 420 (450)
..++.++++++ . +|..+ -++|++|+|++|+|+. ++. ..|..+++|+.|+|++|.+.-. ....
T Consensus 11 ~~v~Cs~~~L~~~~-----vP~~l--p~~l~~L~Ls~N~l~~------l~~--~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-----LPTAF--PVDTTELVLTGNNLTA------LPP--GLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp TEEECCSSCCCTTT-----SCSCC--CTTCSEEECTTSCCSS------CCT--TTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred CEEEeCCCCCcccc-----CCCCC--CcCCCEEECCCCcCCc------cCh--hhhhhccccCEEEecCCCeeccCccHH
Confidence 47888888887 4 55432 2479999999999987 443 5677789999999999987531 1233
Q ss_pred HHHHHhc
Q 013056 421 LLDTLST 427 (450)
Q Consensus 421 l~~~l~~ 427 (450)
+...+..
T Consensus 76 l~~wl~~ 82 (130)
T 3rfe_A 76 LRAWLAG 82 (130)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555554
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.51 E-value=0.087 Score=50.54 Aligned_cols=61 Identities=10% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCCCceeEEEccCCCCChhhHHHHHHHhhcCCCCCEEecCCCCCChhhHHHHHHHHHhhcCCCCCcCEEEccC
Q 013056 337 GKSLQSLRLLNLRGNNLCKADARDLGSALVHIPNLEILDISDNTIEDDGIRSLIPYFVQASERCNPLVELYLEN 410 (450)
Q Consensus 337 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~g~~~l~~~l~~~l~~~~~L~~L~L~~ 410 (450)
+..|.+|+.+.+.++.++.-+ ..++..+.+|+.++|..+ ++. +.. .+|..|.+|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~----~~aF~~c~~L~~i~lp~~-l~~------I~~--~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLE----PRVFMDCVKLSSVTLPTA-LKT------IQV--YAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCE------ECT--TTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccceeh----hhhhcCCCCCCEEEcCcc-ccE------EHH--HHhhCCCCCCEEEECC
Confidence 345566666666665555311 224556666666666543 322 110 4456666666666543
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.46 E-value=0.059 Score=51.72 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=80.0
Q ss_pred hcCCCccEEEccCCCCChhHHHHHHHHHhccccCCCCeeEEEcCCCCCCCCCchhhHHHHHHhhcCCCCCCEEecCCCCC
Q 013056 210 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 289 (450)
Q Consensus 210 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 289 (450)
..+.+|+.+.+..+ +...+..++.. +..|+.+.+..+ ++..+ ...+.++.+|+.+.+..+ +
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~--------~~~L~~i~lp~~-v~~I~--------~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYG--------MKALDEIAIPKN-VTSIG--------SFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTT--------CSSCCEEEECTT-CCEEC--------TTTTTTCTTCCEEEECCC-C
T ss_pred ccccccceeeeccc-eeEEccccccC--------CccceEEEcCCC-ccEeC--------ccccceeehhcccccccc-c
Confidence 45566777766544 22111111111 577888887654 33311 234567888999988654 3
Q ss_pred ChhHHHHHHHHHhhCCCCCcEEeccCCCCCCcccccCcccHHHhhhCCCCCCceeEEEccCCCCChhhHHHHHHHhhcCC
Q 013056 290 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRGNNLCKADARDLGSALVHIP 369 (450)
Q Consensus 290 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~l~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 369 (450)
...+. ..+..|.+|+.+.+.++.++.... ..|.+|.+|+.+.|..+ ++.-| ..++.+++
T Consensus 275 ~~i~~-----~aF~~c~~L~~i~l~~~~i~~I~~-----------~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~ 333 (379)
T 4h09_A 275 KTVPY-----LLCSGCSNLTKVVMDNSAIETLEP-----------RVFMDCVKLSSVTLPTA-LKTIQ----VYAFKNCK 333 (379)
T ss_dssp SEECT-----TTTTTCTTCCEEEECCTTCCEECT-----------TTTTTCTTCCEEECCTT-CCEEC----TTTTTTCT
T ss_pred eeccc-----cccccccccccccccccccceehh-----------hhhcCCCCCCEEEcCcc-ccEEH----HHHhhCCC
Confidence 32121 223558899999998887664333 45557899999999754 44421 23578899
Q ss_pred CCCEEecCCC
Q 013056 370 NLEILDISDN 379 (450)
Q Consensus 370 ~L~~L~Ls~N 379 (450)
+|+.+.+..+
T Consensus 334 ~L~~i~ip~~ 343 (379)
T 4h09_A 334 ALSTISYPKS 343 (379)
T ss_dssp TCCCCCCCTT
T ss_pred CCCEEEECCc
Confidence 9999998754
No 166
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=90.55 E-value=0.15 Score=46.99 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.6
Q ss_pred chhhccCchHHHHHHHhcCChhhh
Q 013056 17 IPYVYELPADLFDILLTCLPPLAL 40 (450)
Q Consensus 17 ~~~~~~lp~~ll~~~~~~l~~~~~ 40 (450)
.+.+..||.|++..||++|||..|
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L 71 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATEL 71 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHH
Confidence 457789999999999999998888
No 167
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=86.98 E-value=0.25 Score=45.24 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.9
Q ss_pred hhccCchHHHHHHHhcCChhhhhhhh
Q 013056 19 YVYELPADLFDILLTCLPPLALQKLQ 44 (450)
Q Consensus 19 ~~~~lp~~ll~~~~~~l~~~~~~~~~ 44 (450)
-+.+||.|++..|+++|+|.+++++.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~ 29 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLG 29 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHH
Confidence 46789999999999999999996655
No 168
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=85.78 E-value=0.3 Score=47.71 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=22.5
Q ss_pred hhhccCchHHHHHHHhcCChhhhhhhh
Q 013056 18 PYVYELPADLFDILLTCLPPLALQKLQ 44 (450)
Q Consensus 18 ~~~~~lp~~ll~~~~~~l~~~~~~~~~ 44 (450)
-.+..||.|++..||++||+..|.+..
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~ 39 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSL 39 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHH
Confidence 357789999999999999998884443
No 169
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=74.90 E-value=1.6 Score=42.17 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.9
Q ss_pred hhhccCchHHHHHHHhcCChhhhhhhh
Q 013056 18 PYVYELPADLFDILLTCLPPLALQKLQ 44 (450)
Q Consensus 18 ~~~~~lp~~ll~~~~~~l~~~~~~~~~ 44 (450)
-.+..||.|++..||++|+|..|.+..
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~ 43 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAA 43 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHH
Confidence 457789999999999999998885554
No 170
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=73.89 E-value=0.96 Score=43.75 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.1
Q ss_pred hhccCchH----HHHHHHhcCChhhhhhhh
Q 013056 19 YVYELPAD----LFDILLTCLPPLALQKLQ 44 (450)
Q Consensus 19 ~~~~lp~~----ll~~~~~~l~~~~~~~~~ 44 (450)
++..||.| ++..||++|++..|.+..
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~ 39 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAE 39 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHH
Confidence 56789999 999999999998885444
No 171
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=23.70 E-value=85 Score=23.19 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=28.3
Q ss_pred CchHHHHHHHhcCChhhhhhhhhcCCCCCCCCCcccccccccccccCCchHHHHHHHhcccCCCCCCCCCcchHHHHH
Q 013056 23 LPADLFDILLTCLPPLALQKLQTKMDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYW 100 (450)
Q Consensus 23 lp~~ll~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~r~~~~~~~W~~l~~~~w~~~~~~~~~~~~~~~~~ 100 (450)
.|++|+.-|+.+-+|.-|.++...- +. .-.+-..-|++.|...++.... ....+|++.|.
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~n-------P~----------L~~dTdeLWk~~c~rdF~~~~p-~e~esWRelY~ 72 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYN-------HV----------LIEETDQLWKVHCHRDFKEERP-EEYESWREMYL 72 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC-----------------------CCHHHHHHHC----CCSCC-CSSSCHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhC-------cc----------cchhhHHHHHHHHHhHCcccCC-CCCCCHHHHHH
Confidence 4556665555555555555555111 11 1233456799999988886554 45789999996
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.49 E-value=65 Score=23.79 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=21.9
Q ss_pred hCCCCCCceeEEEccCC--CCChhhHHHHHHHhhcCCCCCEEecCCC
Q 013056 335 GAGKSLQSLRLLNLRGN--NLCKADARDLGSALVHIPNLEILDISDN 379 (450)
Q Consensus 335 ~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~N 379 (450)
..|.+|.+|+.+.+-.+ .|.+ .+|..|.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~Ig~-------~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGLLYD-------GMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSCCCT-------TSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCchheEcH-------HHHhccCCccEEEEcCC
Confidence 33446677777776554 3332 23566667777766553
Done!