BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013058
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 250/452 (55%), Gaps = 10/452 (2%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLRKHLIYGG-ALPR 120
WV + + L LR++ + LN F+ NLR L+ GG A
Sbjct: 72 ALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSD 131
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SR 179
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKST 188
Query: 180 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA 239
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 EPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKD 248
Query: 240 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFI 297
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GFI
Sbjct: 249 YSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFI 307
Query: 298 VVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 357
VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII F
Sbjct: 308 VVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHF 367
Query: 358 LQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 417
L+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 368 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 427
Query: 418 QSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 449
L++E+ K +VV H ++ F + Q
Sbjct: 428 LGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 250/452 (55%), Gaps = 10/452 (2%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLRKHLIYGG-ALPR 120
WV + + L LR++ + LN F+ NLR L+ GG A
Sbjct: 72 ALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSD 131
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SR 179
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKST 188
Query: 180 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA 239
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 EPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKD 248
Query: 240 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFI 297
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GFI
Sbjct: 249 YSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFI 307
Query: 298 VVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 357
VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII F
Sbjct: 308 VVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHF 367
Query: 358 LQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARD 417
L+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+
Sbjct: 368 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARE 427
Query: 418 QSGLLWEDPKKMRLVVKAEIHMHMREFLRGQN 449
L++E+ K +VV H ++ F + Q
Sbjct: 428 LGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 248/448 (55%), Gaps = 10/448 (2%)
Query: 8 AKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWV 67
+N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P + WV
Sbjct: 17 CRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWV 76
Query: 68 LPDGFTKHRVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLRKHLIYGG-ALPREPMP 124
+ + L LR++ + LN F+ NLR L+ GG A +
Sbjct: 77 KKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQ 136
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SRRDKE 183
G + L+ YA +WE L ++ S A + + + Q GL+ S E
Sbjct: 137 LGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGE 193
Query: 184 APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN 243
P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++
Sbjct: 194 PPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVE 253
Query: 244 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFIVVET 301
+S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GFIVVET
Sbjct: 254 GMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 312
Query: 302 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 361
N+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 313 NYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTR 372
Query: 362 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGL 421
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +AR+ L
Sbjct: 373 AHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVL 432
Query: 422 LWEDPKKMRLVVKAEIHMHMREFLRGQN 449
++E+ K +VV H ++ F + Q
Sbjct: 433 VFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 241 bits (615), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 242/457 (52%), Gaps = 26/457 (5%)
Query: 13 DMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGF 72
D + L L RLY++P C A+ R LP LA+ +M M + I ++ V P
Sbjct: 11 DYLEGLPEAVLTRLYQSPATCLAVFRLLPALARTLIMGMIFNPDPIAVADVDALVKP--- 67
Query: 73 TKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLP 132
+ R+ ++ +LRL + + +N TF+ NLR L+ G +P +
Sbjct: 68 SSQRLKLETQKKLRLLHIFTETQAHIIINPTFKKNLRAALVGGDQNISFGVPCDTEDKHK 127
Query: 133 T-LEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESG 191
+ L+A+A+ QWE L ++ ++ P S ++ + + L ++ R+T +G
Sbjct: 128 VDVAFLDAHAVSQWEMILHFMVGTSIGRTP---SDGVLNLLKHSGLMEPERGGLRITNAG 184
Query: 192 FQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKS 251
FQFLL D NAQ+W ++ +Y++ S+ ++ D+++F+ L G+ Y+L+ LSE QK
Sbjct: 185 FQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKH 244
Query: 252 MIKDFADLGLVKLQQGRKENWFIPTKLATNLSM------------------SLTDSSARK 293
M++D D G+V Q+ F PT+LAT L+ +++ S A
Sbjct: 245 MLEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAAD 303
Query: 294 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 353
GFI++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQ
Sbjct: 304 SGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQ 363
Query: 354 IISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACD 413
II++L +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++
Sbjct: 364 IITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDVST 423
Query: 414 YARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 450
YA++ LL+E+P K + V + EF++ +N+
Sbjct: 424 YAKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 262/478 (54%), Gaps = 54/478 (11%)
Query: 15 VASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTK 74
+ASL ++DL+ LY++P+ C+AILRSLPP +K+Y+++M +D P + ++W +
Sbjct: 10 LASLDSKDLEELYKDPWTCQAILRSLPPRSKQYILKMLLVD-TYPLSLAKDWSTQASIQQ 68
Query: 75 HRVAIDRLVQLRLFSEEK-----------------------------KKETTYRLNSTFQ 105
H+ ++ +L L++ +K + E T RLN FQ
Sbjct: 69 HKESLKKLFDLKIIFLDKINKPIQPQQQQSSQQSSSQQQQQQQQQQQQTEQTIRLNPLFQ 128
Query: 106 SNLRKHLIYGGALPREPMPS-GITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNF 164
N+++ L+ + S + P+++DL++Y+ QWE L L S +P+
Sbjct: 129 DNIKRSLVQVNQVIFSNNSSIKDNHKPPSIDDLDSYSKSQWEKVLYFL--SDDTVQPSKL 186
Query: 165 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GIN 220
S ++ L++++ + +T GF+FLL D Q+W ++ Y+ + +++ +
Sbjct: 187 ISELL---LSSNLTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGS 243
Query: 221 QADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT 280
+ DL+SFL LSF G Y ++ LSE QK + GL+ ++ F PT+L
Sbjct: 244 RNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLII 302
Query: 281 NLS----MSLTDS-------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 329
+L+ +SL S + +++G+IV+ETN+R+YAY++S L +L LF K+ Y+LP
Sbjct: 303 SLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLP 362
Query: 330 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLN 389
NL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ N
Sbjct: 363 NLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERN 422
Query: 390 RVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLW-EDPKKMRLVVKAEIHMHMREFLR 446
R+ T + Y+ FP+ D + A +A++Q +W DP K LVVK E + +R F++
Sbjct: 423 RITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKT-LVVKEEGNDPIRNFIK 479
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 226/411 (54%), Gaps = 14/411 (3%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY+ P C A+ R LP LA++YVM M + + + W+ + ++LV+
Sbjct: 21 RLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMP-SGITARLPTLEDLEAYAIG 143
+ +F + + T LNS F+ L GG +P + L T++ L+AYA
Sbjct: 81 MHIFQFDGQYIT---LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKE 137
Query: 144 QWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQL 203
WE L ++ + +A+ P ++ + +RG L K R+T +GFQFLL D NAQ+
Sbjct: 138 TWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQI 194
Query: 204 WYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK 263
W ++ +Y+ S++ ++ ++ FL L G AY+++ L++ Q+ M++D + GLV
Sbjct: 195 WTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV- 253
Query: 264 LQQGRKENWFIPTKLATNLSMSLTDSSARK------EGFIVVETNFRMYAYSTSKLHCEI 317
Q+ F PT+LAT L+ ++ +GFI+VETN+R+YAY++S L I
Sbjct: 254 YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAI 313
Query: 318 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENV 377
+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P +
Sbjct: 314 IGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTL 373
Query: 378 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKK 428
DQI LWE + NR+ TP + +F + F+ A +YA++ L+W+ K
Sbjct: 374 VDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKELGVLVWDSSLK 424
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/490 (30%), Positives = 241/490 (49%), Gaps = 92/490 (18%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLYE P C +I R LPP+AK Y+M M + + + K +++W P T + D L +
Sbjct: 25 RLYEAPATCLSIYRLLPPIAKFYIMTMLFYETPVALKDLDKWCKP---TSRKFQFDSLKR 81
Query: 85 LRLFS--EEKKKETTYRLNSTFQSNLRKHLIYG------GALPREPMPSGITARLPTLED 136
LR EE + RL+ TF+ N R L G L P ++ +
Sbjct: 82 LRALHLIEEDSSGSHIRLHPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKF----- 136
Query: 137 LEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRL--TESGFQF 194
L+++A+ +WE L ++ + + P+N S++K GL+ +K RL T SGFQF
Sbjct: 137 LDSFALQKWESILHFMVGTELSVTPSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQF 194
Query: 195 LLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIK 254
LL D NAQ+W ++ +Y++ +Q+ ++ D+++F+ L G+ Y +++LSE Q SM+
Sbjct: 195 LLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLA 254
Query: 255 DFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARK--------------------- 293
D D GL+ Q+ F PT+LAT L+ +DS+A K
Sbjct: 255 DLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQQN 310
Query: 294 ------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 347
+G I++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ NA N
Sbjct: 311 LASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYN 370
Query: 348 GITAEQIISFLQQNAHPRVA---------------------------------------- 367
GITA+QII FL+ +AH ++
Sbjct: 371 GITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVA 430
Query: 368 -DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDP 426
++ +P V DQI+LW+ +L+R++ + + +F S+ FEA +YA + LLW +
Sbjct: 431 QHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLLWSNK 490
Query: 427 KKMRLVVKAE 436
KM+ V +
Sbjct: 491 SKMKFFVTKD 500
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/473 (30%), Positives = 237/473 (50%), Gaps = 56/473 (11%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLYE+P C AI R L P+AK ++M M + D + + +++WV PD + + +I +
Sbjct: 24 RLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAKYQLQYSIKSMKS 83
Query: 85 LRLFSE-EKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLP-TLEDLEAYAI 142
L L E E K+ RLN F+ + K+++ GG + P + L+ Y+
Sbjct: 84 LNLIIEGESKQPLLIRLNPIFKKSF-KNVLTGGEINNSFGDVADDDTNPVSTATLDQYSA 142
Query: 143 GQWECFLLQLISSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNA 201
+WE L ++ + P ++ + Q GL+ + ++T GFQFLL D NA
Sbjct: 143 EKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITNQGFQFLLQDVNA 199
Query: 202 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 261
Q+W ++ +Y+ ++ ++ D+++F+ L G+AY + LS Q++M++D D GL
Sbjct: 200 QMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGL 259
Query: 262 VKLQQGRKENWFIPTKLAT-----------------------NLSMSLTDSSARKE---- 294
+ Q F PT+LAT N + ++ S + E
Sbjct: 260 IYQNQSDYAK-FYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAVEGDSGQDETTER 318
Query: 295 ---GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITA 351
G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+ES+ NA NGITA
Sbjct: 319 TQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITA 378
Query: 352 EQIISFLQQNAHPR------------------VADRMPSVPENVCDQIRLWESDLNRVEM 393
EQII++L+ +AHPR V + + +P V DQIRLW+ +L+R+
Sbjct: 379 EQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIIS 438
Query: 394 TPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLR 446
+ Y +F S ++ DYA+D LLW++ KK V E + + +F R
Sbjct: 439 YDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQVLDFHR 491
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 214 bits (546), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 145/488 (29%), Positives = 242/488 (49%), Gaps = 77/488 (15%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY++P C AI R L P+AK ++M M + D + + ++ WV PD + AI +
Sbjct: 33 RLYQSPATCLAIYRLLSPMAKFFIMSMIFQDEEVSLRDLDRWVKPDAKFQLHDAIKSMKL 92
Query: 85 LRLFSEEKKKE-TTYRLNSTFQSNLRKHLI-------YGGALPREPMPSGITARLPTLED 136
L L +E + + +LNS F+ + + L +G + E P T+
Sbjct: 93 LHLITEGRSGQPLMVQLNSIFKESFKNALTGGEVKNSFGNVVEEENDPV-------TMAM 145
Query: 137 LEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLL 196
L++YA +WE L ++ + + P S+++ + + KE ++T GFQFLL
Sbjct: 146 LDSYAADKWETILHFMVGTPLTKSPGKNVLSLLRHSKLMEVDESSKEL-KITNEGFQFLL 204
Query: 197 MDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDF 256
D NAQ+W ++ +Y++ ++ ++ D+++ + + G+AY++ LSE QK+M++D
Sbjct: 205 QDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDL 264
Query: 257 ADLGLVKLQQGRKENWFIPTKLATNLS---MSLTDSSA--------RKEGF--------- 296
D GLV Q+ + F PT+LAT L+ +S+ +S R EG
Sbjct: 265 RDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTA 323
Query: 297 -----------------IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKE 339
++VETNF++Y+YS S L IL LF ++ + N++ G IT+E
Sbjct: 324 LGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRE 383
Query: 340 SLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRMPSVPENVCDQI 381
S+ A NGITA+QII++++ +AHP R+A D + +P V DQI
Sbjct: 384 SIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQI 443
Query: 382 RLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAE----- 436
+LW+ +L+R+ + + +F + ++ YARD LLW D KK V E
Sbjct: 444 KLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQV 503
Query: 437 IHMHMREF 444
I H R+F
Sbjct: 504 IDFHKRKF 511
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 237/481 (49%), Gaps = 67/481 (13%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY++P C AI R LP LAK ++M + + D I + ++ WV +G + + AI +
Sbjct: 24 RLYKSPATCLAIYRLLPTLAKFFIMTVIFNDKDISLRDLDRWVKSNGKLQFQEAIKSMKS 83
Query: 85 LRLFSEEK-KKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITA---RLPTLEDL--- 137
L L + + LN TF+ + R L GG + GI RL T+ +L
Sbjct: 84 LHLLIPTRVNGQLLINLNPTFRESFRNALT-GGEVNNS---FGIVVDEDRLDTVVNLAVL 139
Query: 138 EAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRR--DKEAPRLTESGFQFL 195
+ YA +WE L ++ + A+ P S +++ + + L D +T GFQFL
Sbjct: 140 DEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQFL 196
Query: 196 LMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKD 255
L + N+Q+W ++ +Y+ ++ ++ +++F+ L G+AY+ LSE Q M+ D
Sbjct: 197 LQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLD 256
Query: 256 FADLGLVKLQQGRKENWFIPTKLATNLS----------------MSLTDSSAR------- 292
D GLV Q+ N F PT+LA L+ ++ D +A+
Sbjct: 257 MRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDAAKSTDDKYD 315
Query: 293 ---------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYN 343
++G +++ETNF++Y+Y S L IL LF ++ + N++ G IT+ES+
Sbjct: 316 SLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRR 375
Query: 344 AFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENVCDQIRLWE 385
A NGITA+Q+I++L+ +AHP++ D + +P V DQI+LW+
Sbjct: 376 ALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQ 435
Query: 386 SDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFL 445
+L+RV Y +F + F C YA+D LLW+D +K +L V E + + E+
Sbjct: 436 LELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQVLEYA 495
Query: 446 R 446
+
Sbjct: 496 K 496
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 141/489 (28%), Positives = 241/489 (49%), Gaps = 71/489 (14%)
Query: 24 DRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLV 83
+RLY +P C AI R LPPLAK ++M M + + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +LR L GG + + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALT-GGEV-QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAP-RLTESGFQFLLMDTNA 201
+WE L ++ + A+ P+ +++K L+ + ++T GFQFLL + N+
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLK--HSKLMEEVNSTGEFKITNEGFQFLLQEINS 198
Query: 202 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 261
QLW ++ +Y+ + ++ D++ F+ L G+AY ++ LSE Q+ M++D D GL
Sbjct: 199 QLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGL 258
Query: 262 VKLQQGRKENWFIPTKLATNLS---------MSLTDSSARK------------------- 293
V Q+ ++ F PTKLA L+ + DS R+
Sbjct: 259 V-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTD 317
Query: 294 ------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 335
+G ++VETNF++Y+YS S L +L LF ++ + N+++G
Sbjct: 318 ITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQ 377
Query: 336 ITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENV 377
IT+ES+ A NGITA+QII++L+ +AHP++ + + +P V
Sbjct: 378 ITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTV 437
Query: 378 CDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEI 437
DQIRLW+ +L+RV Y +F + + YA+D LLW+D KK + + E
Sbjct: 438 VDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEG 497
Query: 438 HMHMREFLR 446
+ + +F +
Sbjct: 498 NSQVLDFAK 506
>sp|P42316|SCOB_BACSU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Bacillus subtilis (strain 168) GN=scoB PE=1 SV=1
Length = 216
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 218 GINQADLISFLLELSFHVAGEAY--NLNTLSEIQKSMIKDFADLGLVKL-QQGRKENWFI 274
G ADLI+ E V G +Y + + + I+ I D A LG +++ +QG NW I
Sbjct: 60 GTEDADLINAGKETITEVTGASYFDSAESFAMIRGGHI-DLAILGGMEVSEQGDLANWMI 118
Query: 275 PTKLATNL--SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 328
P K+ + +M L + + R +V+ + + S K C + KV ++L
Sbjct: 119 PGKMVKGMGGAMDLVNGAKR---IVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRL 171
>sp|Q2JTM9|Y1810_SYNJA UPF0182 protein CYA_1810 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_1810 PE=3 SV=1
Length = 851
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 347 NGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRD 406
N +TAE + F + PRV+ R P V + + RVE PA YY E + D
Sbjct: 426 NVVTAEGLPDFFLSDIPPRVSPRYPEV------------AQVLRVEQ-PALYYSELTTTD 472
Query: 407 VFEAA 411
VF A
Sbjct: 473 VFVGA 477
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae
GN=CBG18211 PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 198 DTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFA 257
D + + + + EY S S+ +++ ++I ++ L HV + L Q + I+
Sbjct: 38 DHSKEAYLHISEYGSTSRRCRVSEDEIIDEIVCLHLHVLHSVHVAKDLISSQSTQIRIIQ 97
Query: 258 DLGLVKLQQGRKENWFIPT--KLATNL 282
LQ+ + ENWF+P +L T+L
Sbjct: 98 LFNKEILQKRKDENWFLPIFYRLCTDL 124
>sp|P31235|CASQ2_RABIT Calsequestrin-2 OS=Oryctolagus cuniculus GN=CASQ2 PE=1 SV=1
Length = 409
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 350 TAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 409
T E+++ F++++ P + P D WE DLN + + P + + E
Sbjct: 233 TEEELVEFVKEHQRPTLRRLRPE------DMFETWEDDLNGIHIVPFAEKSDPDGYEFLE 286
Query: 410 AACDYARDQS-----GLLWEDPKKMRLVV 433
ARD + ++W DP L+V
Sbjct: 287 ILKQVARDNTDNPDLSIVWIDPDDFPLLV 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,872,318
Number of Sequences: 539616
Number of extensions: 6291980
Number of successful extensions: 15120
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 15068
Number of HSP's gapped (non-prelim): 35
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)