Query 013058
Match_columns 450
No_of_seqs 136 out of 210
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 03:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 1.8E-33 6.1E-38 240.2 6.0 88 363-450 18-105 (108)
2 3dgp_A RNA polymerase II trans 100.0 1.8E-31 6.3E-36 217.4 6.9 76 375-450 2-77 (80)
3 3jth_A Transcription activator 81.2 6 0.00021 31.3 7.8 81 31-113 11-92 (98)
4 3f6o_A Probable transcriptiona 80.9 6.1 0.00021 32.7 8.0 80 31-112 6-86 (118)
5 3pqk_A Biofilm growth-associat 80.6 4.9 0.00017 32.1 7.2 79 32-112 12-91 (102)
6 3cuo_A Uncharacterized HTH-typ 77.6 16 0.00053 28.4 9.2 81 31-112 12-93 (99)
7 1r1u_A CZRA, repressor protein 72.1 14 0.00047 29.8 7.7 79 32-112 15-94 (106)
8 2oqg_A Possible transcriptiona 68.6 23 0.00077 28.3 8.3 78 31-110 9-87 (114)
9 3f6v_A Possible transcriptiona 67.2 16 0.00054 32.0 7.5 77 34-112 49-126 (151)
10 2kko_A Possible transcriptiona 67.2 12 0.00041 30.5 6.3 79 33-113 15-94 (108)
11 2jsc_A Transcriptional regulat 58.8 23 0.00078 29.2 6.6 77 35-113 13-90 (118)
12 1y0u_A Arsenical resistance op 55.8 21 0.00072 28.1 5.7 64 34-103 22-85 (96)
13 2zkz_A Transcriptional repress 52.4 30 0.001 27.6 6.1 81 30-112 14-95 (99)
14 1u2w_A CADC repressor, cadmium 51.8 29 0.00099 28.8 6.1 79 32-111 31-110 (122)
15 1b0n_B Protein (SINI protein); 51.0 12 0.00041 28.2 3.2 24 341-364 19-42 (57)
16 2v79_A DNA replication protein 50.3 8.9 0.00031 33.2 2.7 78 201-282 15-106 (135)
17 1r1t_A Transcriptional repress 48.1 75 0.0026 26.3 8.2 76 32-109 35-111 (122)
18 3df8_A Possible HXLR family tr 46.3 14 0.00049 30.3 3.3 71 34-105 18-90 (111)
19 2hzt_A Putative HTH-type trans 43.8 70 0.0024 25.6 7.2 68 35-103 6-77 (107)
20 2fsw_A PG_0823 protein; alpha- 39.1 64 0.0022 25.8 6.2 70 34-104 16-89 (107)
21 2lkp_A Transcriptional regulat 38.3 1E+02 0.0034 24.8 7.3 78 33-112 22-101 (119)
22 1ub9_A Hypothetical protein PH 38.0 70 0.0024 24.4 6.1 72 39-111 12-87 (100)
23 1r7j_A Conserved hypothetical 36.3 11 0.00039 30.4 1.1 30 166-195 38-67 (95)
24 2z99_A Putative uncharacterize 33.6 46 0.0016 31.4 5.0 63 41-108 96-165 (219)
25 3s4e_A Dual specificity protei 32.3 25 0.00087 29.5 2.7 56 329-390 83-144 (144)
26 3lab_A Putative KDPG (2-keto-3 31.3 49 0.0017 31.1 4.8 93 294-396 37-141 (217)
27 1t6s_A Conserved hypothetical 31.2 30 0.001 31.0 3.1 77 28-108 72-160 (162)
28 3kfw_X Uncharacterized protein 29.2 1.3E+02 0.0046 28.5 7.5 69 40-111 1-73 (247)
29 2d1h_A ST1889, 109AA long hypo 28.2 2E+02 0.0067 21.9 7.7 75 37-112 16-97 (109)
30 1p6r_A Penicillinase repressor 27.9 39 0.0013 25.6 2.9 48 44-91 10-60 (82)
31 1yyv_A Putative transcriptiona 27.4 1.1E+02 0.0038 25.7 6.0 72 34-106 26-101 (131)
32 1xmk_A Double-stranded RNA-spe 27.2 1E+02 0.0036 24.2 5.3 59 45-103 13-71 (79)
33 2hl7_A Cytochrome C-type bioge 25.6 48 0.0017 26.7 3.1 25 338-362 49-73 (84)
34 2kw0_A CCMH protein; oxidoredu 24.3 52 0.0018 26.9 3.1 25 338-362 46-70 (90)
35 2fu4_A Ferric uptake regulatio 23.5 1.2E+02 0.004 22.8 4.9 58 44-101 18-83 (83)
36 1w8i_A Putative VAPC ribonucle 23.2 71 0.0024 27.1 4.0 112 297-427 3-122 (156)
37 1zzw_A Dual specificity protei 23.2 1.4E+02 0.0047 24.9 5.8 47 336-388 94-144 (149)
38 2gjf_A Designed protein; proca 22.3 1.3E+02 0.0045 22.7 5.0 51 398-448 11-68 (78)
39 3sr0_A Adenylate kinase; phosp 21.6 41 0.0014 30.6 2.2 78 325-420 23-102 (206)
40 3mhs_B Protein SUS1; multi-pro 21.4 62 0.0021 26.6 3.0 37 337-382 46-82 (96)
41 3u5c_T 40S ribosomal protein S 20.7 50 0.0017 29.3 2.5 31 165-195 101-132 (144)
42 4g6q_A Putative uncharacterize 20.2 1.4E+02 0.0048 26.5 5.5 68 34-102 14-87 (182)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.8e-33 Score=240.18 Aligned_cols=88 Identities=30% Similarity=0.586 Sum_probs=72.4
Q ss_pred CccccccCCCCChhHHHHHHHHHHhcCceeeecceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHH
Q 013058 363 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMR 442 (450)
Q Consensus 363 Hp~m~~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~f~~v~~ya~~~g~llw~~~~kr~~~V~~~~~~~vr 442 (450)
.|+++...|+|||||+|||||||.|||||++++||||++|.|+++|+.+++||+++|||+|+|+.+|+|||+.+||++||
T Consensus 18 ~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk 97 (108)
T 3dom_A 18 DPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVL 97 (108)
T ss_dssp --------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHH
T ss_pred CcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHH
Confidence 35556667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC
Q 013058 443 EFLRGQNK 450 (450)
Q Consensus 443 ~f~k~~~~ 450 (450)
+|||++++
T Consensus 98 ~f~Kr~~~ 105 (108)
T 3dom_A 98 DFAKRKLK 105 (108)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99999875
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-31 Score=217.36 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCceeeecceeecCCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHHHHHhhccC
Q 013058 375 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQNK 450 (450)
Q Consensus 375 ~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~s~~~f~~v~~ya~~~g~llw~~~~kr~~~V~~~~~~~vr~f~k~~~~ 450 (450)
|||+|||||||+|||||++++||||++|+|+++|+.+++||+++|||+|+|+.+|+|||+.+||++||+|||++++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.21 E-value=6 Score=31.30 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=63.4
Q ss_pred hhHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecCC-CceeEEeCHHHHHHHH
Q 013058 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKK-KETTYRLNSTFQSNLR 109 (450)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~-~~~~~~Ln~~F~~~lr 109 (450)
.....+|+.|..-.+.-|+.+|.- ++++..++..-+. -++......++.|.+.+++...+. ....|.+++..-+.+.
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~-is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~ 88 (98)
T 3jth_A 11 AKAVVLLKAMANERRLQILCMLHN-QELSVGELCAKLQ-LSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMI 88 (98)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHTTT-SCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhc-CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHH
Confidence 345678888888888889998875 8899999988875 446788999999999999986433 3467999998777666
Q ss_pred HHHh
Q 013058 110 KHLI 113 (450)
Q Consensus 110 ~aL~ 113 (450)
..+.
T Consensus 89 ~~l~ 92 (98)
T 3jth_A 89 KLLH 92 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 4
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=80.87 E-value=6.1 Score=32.72 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=63.1
Q ss_pred hhHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC-CCceeEEeCHHHHHHHH
Q 013058 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (450)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (450)
.....+|+.|..-.+.-|+.+|. ++|++..++..-+. -++......++.|.+.+++...+ +....|.|++...+.+.
T Consensus 6 ~~~~~~~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~-is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~ 83 (118)
T 3f6o_A 6 EQLNGIFQALADPTRRAVLGRLS-RGPATVSELAKPFD-MALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVE 83 (118)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHH-TCCEEHHHHHTTCC-SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhC-cCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHH
Confidence 34567899998888998999997 78999999988765 44777888999999999997643 34577999998777665
Q ss_pred HHH
Q 013058 110 KHL 112 (450)
Q Consensus 110 ~aL 112 (450)
..+
T Consensus 84 ~~~ 86 (118)
T 3f6o_A 84 AWL 86 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=80.63 E-value=4.9 Score=32.14 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=60.7
Q ss_pred hHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC-CCceeEEeCHHHHHHHHH
Q 013058 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (450)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (450)
....+|+.|..-.+.-|+++|. ++|.+..++..-+. -+.......++.|.+.+++...+ +....|.|++..-..+..
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~-~~~~~~~ela~~l~-is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~ 89 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV-EGEFSVGELEQQIG-IGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVN 89 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH-TCCBCHHHHHHHHT-CCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHH
Confidence 3457888888888888999985 57899999988774 45678899999999999998643 344779999965555554
Q ss_pred HH
Q 013058 111 HL 112 (450)
Q Consensus 111 aL 112 (450)
++
T Consensus 90 ~l 91 (102)
T 3pqk_A 90 AL 91 (102)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 6
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=77.57 E-value=16 Score=28.39 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=62.0
Q ss_pred hhHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC-CCceeEEeCHHHHHHHH
Q 013058 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (450)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (450)
.....+|+.|..-.+.-|+..|...++++..++..=+.- ++......++.|.+.+++...+ +....|.|++.-.+.+.
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~~~~~~s~~ela~~l~i-s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGL-SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTTCCSEEHHHHHHHHCC-CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 344567787777778889999987778999998886653 4678889999999999997643 34467889998777666
Q ss_pred HHH
Q 013058 110 KHL 112 (450)
Q Consensus 110 ~aL 112 (450)
..+
T Consensus 91 ~~l 93 (99)
T 3cuo_A 91 ATL 93 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 7
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=72.12 E-value=14 Score=29.83 Aligned_cols=79 Identities=10% Similarity=0.162 Sum_probs=59.7
Q ss_pred hHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC-CCceeEEeCHHHHHHHHH
Q 013058 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (450)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (450)
....+|+.|..-.+.-|+.+|. +++.+..++..-+.- ++......++.|.+.+++...+ +....|.+++..-..+-.
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~i-s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 92 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLNL-SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLK 92 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHH
Confidence 3456889888888888888887 778899999887754 4677889999999999997632 334678899876555544
Q ss_pred HH
Q 013058 111 HL 112 (450)
Q Consensus 111 aL 112 (450)
.+
T Consensus 93 ~l 94 (106)
T 1r1u_A 93 QA 94 (106)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=68.59 E-value=23 Score=28.32 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=59.2
Q ss_pred hhHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC-CCceeEEeCHHHHHHHH
Q 013058 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (450)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (450)
.....+|+.|..-.+.-|+..| .+++++..++..-+.- ++......++.|.+.+++...+ +....|.|++.-.+.+.
T Consensus 9 ~~~~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~i-s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~ 86 (114)
T 2oqg_A 9 AELASVFAALSDETRWEILTEL-GRADQSASSLATRLPV-SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTA 86 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHH
Confidence 3456788888888888888888 6788999999887754 4677889999999999997532 33466889887655444
Q ss_pred H
Q 013058 110 K 110 (450)
Q Consensus 110 ~ 110 (450)
.
T Consensus 87 ~ 87 (114)
T 2oqg_A 87 R 87 (114)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=67.22 E-value=16 Score=32.02 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=61.7
Q ss_pred HHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec-CCCceeEEeCHHHHHHHHHHH
Q 013058 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNLRKHL 112 (450)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln~~F~~~lr~aL 112 (450)
..+|+.|..-.+.-|+++|. +++.+..++..-+. -++......|+.|.+.+++... .+....|.|++.-.+.+...+
T Consensus 49 ~~~l~aL~~p~R~~IL~~L~-~~~~t~~eLa~~lg-ls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l 126 (151)
T 3f6v_A 49 LDQLEVAAEPTRRRLVQLLT-SGEQTVNNLAAHFP-ASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALF 126 (151)
T ss_dssp CCHHHHHTSHHHHHHHHHGG-GCCEEHHHHHTTSS-SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 36889888888999999998 78899999988765 4478889999999999999864 334467999998777666554
No 10
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=67.15 E-value=12 Score=30.47 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=59.6
Q ss_pred HHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec-CCCceeEEeCHHHHHHHHHH
Q 013058 33 CEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNLRKH 111 (450)
Q Consensus 33 claifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln~~F~~~lr~a 111 (450)
...+|+.|..-.+.-|+.+|. +++++..++..-+.- ++......++.|.+.+++... .+....|.|++.-...+..+
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lgi-s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~ 92 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA-QGERAVEAIATATGM-NLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFAL 92 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 456788777777777777776 578889999887753 467788999999999999763 33446789998877766666
Q ss_pred Hh
Q 013058 112 LI 113 (450)
Q Consensus 112 L~ 113 (450)
|.
T Consensus 93 l~ 94 (108)
T 2kko_A 93 VQ 94 (108)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 11
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=58.83 E-value=23 Score=29.24 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=55.0
Q ss_pred HHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec-CCCceeEEeCHHHHHHHHHHHh
Q 013058 35 AILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNLRKHLI 113 (450)
Q Consensus 35 aifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln~~F~~~lr~aL~ 113 (450)
.+|+.|..-.+.-|+++|. +++.+..++..-+. -++......++.|.+.+++... .+....|.|++.--..+...+.
T Consensus 13 ~~~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lg-is~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~ 90 (118)
T 2jsc_A 13 RLGRALADPTRCRILVALL-DGVCYPGQLAAHLG-LTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELV 90 (118)
T ss_dssp THHHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHS-SCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHH
Confidence 4666666666666777776 67788888887765 4577888999999999999764 3344679999875544444443
No 12
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=55.78 E-value=21 Score=28.06 Aligned_cols=64 Identities=5% Similarity=0.010 Sum_probs=51.3
Q ss_pred HHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecCCCceeEEeCHH
Q 013058 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNST 103 (450)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~ 103 (450)
..+|+.|..-.+.-|+.+| +++++..++..-+. -++......++.|.+.+++...+ | .|.|++.
T Consensus 22 ~~~~~~l~~~~r~~Il~~L--~~~~~~~eLa~~l~-is~~tv~~~L~~L~~~Glv~~~~-g--~y~l~~~ 85 (96)
T 1y0u_A 22 KRYNYAVTNPVRRKILRML--DKGRSEEEIMQTLS-LSKKQLDYHLKVLEAGFCIERVG-E--RWVVTDA 85 (96)
T ss_dssp HHHHHHHSCHHHHHHHHHH--HTTCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEET-T--EEEECTT
T ss_pred HHHHHHhCCHHHHHHHHHH--cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEC-C--EEEECCC
Confidence 4577877777777888888 67899999988775 44777889999999999998754 3 8888875
No 13
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=52.42 E-value=30 Score=27.56 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=60.2
Q ss_pred hhhHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec-CCCceeEEeCHHHHHHH
Q 013058 30 PFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNL 108 (450)
Q Consensus 30 p~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln~~F~~~l 108 (450)
......+|+.|.+-.+.-|++.|..+++.+..++..-+.- ++......++.|.+- ++... .|....|.|++.--+.+
T Consensus 14 ~~~~~~~~~aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~i-s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 14 LEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKL-PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHSCEEHHHHHHHHTC-CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 3456678888887777778866666778888888876654 367788899999999 88653 33446799998877777
Q ss_pred HHHH
Q 013058 109 RKHL 112 (450)
Q Consensus 109 r~aL 112 (450)
...|
T Consensus 92 ~~~l 95 (99)
T 2zkz_A 92 IKLL 95 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 14
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=51.81 E-value=29 Score=28.76 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=58.4
Q ss_pred hHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecCC-CceeEEeCHHHHHHHHH
Q 013058 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKK-KETTYRLNSTFQSNLRK 110 (450)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~-~~~~~~Ln~~F~~~lr~ 110 (450)
....+|+.|..-.+.-|+.+|..+++.+..++..-+.- +.......++.|.+.+++...+. ....|.|++.--..+-.
T Consensus 31 ~~~~~~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~i-s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 31 GVSQILKAIADENRAKITYALCQDEELCVCDIANILGV-TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 45678888877778888888886788899999887753 46788889999999999976433 34678898875555444
Q ss_pred H
Q 013058 111 H 111 (450)
Q Consensus 111 a 111 (450)
.
T Consensus 110 ~ 110 (122)
T 1u2w_A 110 I 110 (122)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=51.00 E-value=12 Score=28.19 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCc
Q 013058 341 LYNAFENGITAEQIISFLQQNAHP 364 (450)
Q Consensus 341 v~~Al~~GITA~QII~fL~~hAHp 364 (450)
|++|-+.|+|-++|..||..+-.+
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC---
T ss_pred HHHHHHcCCCHHHHHHHHHHhccC
Confidence 689999999999999999987543
No 16
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=50.26 E-value=8.9 Score=33.23 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHcCCChhHHHHHHHHhcccccCccccCC-------CCCHHH-HHHHHHHhhcCceeeecC--CC-
Q 013058 201 AQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN-------TLSEIQ-KSMIKDFADLGLVKLQQG--RK- 269 (450)
Q Consensus 201 ~Q~W~lll~yL~~~e~~g~~~~e~L~flf~L~~~~~G~~Y~~~-------~lt~~q-~~~L~~L~~~GLv~~~~~--~~- 269 (450)
.-+-.+|+.+ ..+.|++..|++-.++-..+.+-|..+++- ++++.+ ..+|+.|.+-|+|..... ..
T Consensus 15 ~~ip~~LL~~---y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g 91 (135)
T 2v79_A 15 STIPNLLLTH---YKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNG 91 (135)
T ss_dssp EEEEHHHHHH---HHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTC
T ss_pred ccchHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCC
Confidence 3344455555 456799999987766666677777776652 456655 569999999999988422 11
Q ss_pred ---cccccchhhhhhh
Q 013058 270 ---ENWFIPTKLATNL 282 (450)
Q Consensus 270 ---~~fy~pT~La~~L 282 (450)
..|. .|||---|
T Consensus 92 ~~~~~yd-L~pL~ekL 106 (135)
T 2v79_A 92 IKFEKYS-LQPLWGKL 106 (135)
T ss_dssp CEEEEEE-CHHHHHHH
T ss_pred ceEEEee-HHHHHHHH
Confidence 3455 88887655
No 17
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=48.06 E-value=75 Score=26.33 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=56.7
Q ss_pred hHHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC-CCceeEEeCHHHHHHHH
Q 013058 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (450)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (450)
....+|+.|..-.+.-|+.+|. +++.+..++..-+.- ++......++.|.+.+++...+ +....|.+++.--..+-
T Consensus 35 ~~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lgi-s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~ 111 (122)
T 1r1t_A 35 SLAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIGV-SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALY 111 (122)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHH
Confidence 3457888887777877888886 578888999887754 4778889999999999997633 33467888887544443
No 18
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=46.30 E-value=14 Score=30.31 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHHhhCChhHHHHHHHHhcCCCCCC--hHHHHhhcCCcchhHHHHHHHHHhcCceeeecCCCceeEEeCHHHH
Q 013058 34 EAILRSLPPLAKKYVMQMFYIDGAIP--AKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQ 105 (450)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~--~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~F~ 105 (450)
..+|..|..--+-.|++.|. +++.. ..++..-+..-+.......|+.|.+-+++.........|.|++.=+
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~ 90 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGM 90 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHH
T ss_pred HHHHHHHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHH
Confidence 33445444445667888887 67777 8999998755567889999999999999976432457799998643
No 19
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.84 E-value=70 Score=25.64 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=50.4
Q ss_pred HHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec--C--CCceeEEeCHH
Q 013058 35 AILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE--K--KKETTYRLNST 103 (450)
Q Consensus 35 aifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~ 103 (450)
.+|+.+.+--+-.|+..|. +++....++..-+..-+.......+++|.+.+++... + +....|.|++.
T Consensus 6 ~~l~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 6 ATLEVIGGKWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp HHHHHHCSTTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred HHHHHHcCccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 3455555555666788887 7899999999887555688899999999999999752 1 12356888864
No 20
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=39.08 E-value=64 Score=25.80 Aligned_cols=70 Identities=7% Similarity=-0.058 Sum_probs=52.7
Q ss_pred HHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec--C--CCceeEEeCHHH
Q 013058 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE--K--KKETTYRLNSTF 104 (450)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~F 104 (450)
..+|..+.+--+..|+..|. +++....++..-+..-+.......++.|.+.+++... + .....|.|++.=
T Consensus 16 ~~~l~~l~~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 89 (107)
T 2fsw_A 16 RKSMQIFAGKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG 89 (107)
T ss_dssp HHHHHHHTSSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred HHHHHHHcCccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH
Confidence 45566666666667888887 7889999999877545578899999999999999752 1 123668899863
No 21
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=38.25 E-value=1e+02 Score=24.79 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.6
Q ss_pred HHHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec-CCCceeEEeC-HHHHHHHHH
Q 013058 33 CEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-KKKETTYRLN-STFQSNLRK 110 (450)
Q Consensus 33 claifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln-~~F~~~lr~ 110 (450)
...+|+.|....+.-|+..|.- .+.+..++..-+.- ++......|+.|.+.+++... .+....|.++ ..+.+-++.
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~i-s~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~ 99 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIGM-EQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDE 99 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHSS-CHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHH
Confidence 3467787777777778888875 67888888887654 477888899999999998653 2234668888 666665554
Q ss_pred HH
Q 013058 111 HL 112 (450)
Q Consensus 111 aL 112 (450)
++
T Consensus 100 ~~ 101 (119)
T 2lkp_A 100 AI 101 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=37.97 E-value=70 Score=24.44 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=51.2
Q ss_pred hCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec----CCCceeEEeCHHHHHHHHHH
Q 013058 39 SLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE----KKKETTYRLNSTFQSNLRKH 111 (450)
Q Consensus 39 ~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~----~~~~~~~~Ln~~F~~~lr~a 111 (450)
.|..-.+.-|+..|..+++++.+++..-+.- +.......++.|.+-+++... .+....|.|++.-++-+...
T Consensus 12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i-s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~ 87 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL-TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF 87 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHH
Confidence 4444456667777776678888999887754 467788899999999999742 22346788999876655443
No 23
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=36.27 E-value=11 Score=30.42 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.7
Q ss_pred hhHHHHHHhCCCccCCCCCCccchhhhhhh
Q 013058 166 SSMMKVFQRGLLSRRDKEAPRLTESGFQFL 195 (450)
Q Consensus 166 ~~v~~lL~~~gL~~~~~~~~~IT~~GfqFL 195 (450)
...++.|...||+....++..||++|-++|
T Consensus 38 ~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 38 GRYIKMLMDLEIIRQEGKQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCeEEECCeeEEChhHHHHH
Confidence 445788999999998777899999999975
No 24
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=33.62 E-value=46 Score=31.38 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=49.2
Q ss_pred ChhHHHH--HHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec-----CCCceeEEeCHHHHHHH
Q 013058 41 PPLAKKY--VMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-----KKKETTYRLNSTFQSNL 108 (450)
Q Consensus 41 p~lak~~--vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-----~~~~~~~~Ln~~F~~~l 108 (450)
+.+.+-- +++++...+||+.++++.--.-.. ...++.|..-++|.+. + |...|..++.|..-|
T Consensus 96 ~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~----~~~v~~Lle~gLI~e~Gr~~~~-Gp~ly~tT~~Fl~~f 165 (219)
T 2z99_A 96 TKLTRAALETLAVVAYRQPVTRARVSAVRGVNV----DAVMRTLLARGLITEVGTDADT-GAVTFATTELFLERL 165 (219)
T ss_dssp CCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC----HHHHHHHHHTTSEEEEEECTTT-CCEEEEECHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH----HHHHHHHHHCCCEEEccccCCC-CCeEEEECHHHHHHh
Confidence 3455555 888888899999999998655443 5789999999999762 3 467899999998755
No 25
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=32.26 E-value=25 Score=29.54 Aligned_cols=56 Identities=9% Similarity=0.203 Sum_probs=38.6
Q ss_pred CceEEEE--eCHHHHH-HH---HHcCCCHHHHHHHHHhcCCccccccCCCCChhHHHHHHHHHHhcCc
Q 013058 329 PNLIVGA--ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 390 (450)
Q Consensus 329 PNlvvg~--iTReSv~-~A---l~~GITA~QII~fL~~hAHp~m~~~~~~lP~tV~dQIrLWe~Er~R 390 (450)
+-+|-+. ++|...- -| ...|.+.++.+.++++. .|.+ ...+....|++.||.+++|
T Consensus 83 ~VlVHC~~G~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 83 VVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNA-RPSI-----CPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-STTC-----CCCHHHHHHHHHTTHHHHC
T ss_pred eEEEEcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHhccC
Confidence 4444443 6786433 23 25899999999999974 4532 3456899999999987653
No 26
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=31.26 E-value=49 Score=31.06 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=64.1
Q ss_pred cceEEEeeCceEEeecCChhHHHHHHHHHhhhhcCCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHHhcCC
Q 013058 294 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAH 363 (450)
Q Consensus 294 ~g~IIvETNFrvYAYT~S~lqiaiL~lF~~l~~r~PNlvvg---~iTReSv~~Al~~GI-------TA~QII~fL~~hAH 363 (450)
.|.=++|..|| +|-....+ ..+..++|+++|| ++|.+.+++|.+.|= +-.+++.+-+.+--
T Consensus 37 gGi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 36667887666 44444333 4556678999999 899999999999983 44678888776644
Q ss_pred ccccccCCCCCh--hHHHHHHHHHHhcCceeeecc
Q 013058 364 PRVADRMPSVPE--NVCDQIRLWESDLNRVEMTPA 396 (450)
Q Consensus 364 p~m~~~~~~lP~--tV~dQIrLWe~Er~R~~~~~g 396 (450)
- =.-+.|.+|- |..+=.+-|+.--+-+++.++
T Consensus 108 ~-~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa 141 (217)
T 3lab_A 108 D-GQWQGVFLPGVATASEVMIAAQAGITQLKCFPA 141 (217)
T ss_dssp H-CSCCCEEEEEECSHHHHHHHHHTTCCEEEETTT
T ss_pred C-ccCCCeEeCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 0 0001135553 777778889988888888764
No 27
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=31.16 E-value=30 Score=31.04 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=52.9
Q ss_pred cChhhHHHHHhhCC-----hhHHHH--HHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeee-----cCCCc
Q 013058 28 ENPFICEAILRSLP-----PLAKKY--VMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSE-----EKKKE 95 (450)
Q Consensus 28 ~~p~tclaifR~Lp-----~lak~~--vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~-----~~~~~ 95 (450)
..|.-.-.|=|.++ .|.+-- ++.++...+||+.++++.--.-+ ....++.|..-++|.+ .+|.+
T Consensus 72 t~~~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~----~~~~v~~L~e~glI~e~g~~~~~GRp 147 (162)
T 1t6s_A 72 TEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS----PDYSIDRLLARGLIEVRGRADSPGRP 147 (162)
T ss_dssp ECGGGHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC----CCSHHHHHHHTTSEEEEEECSSTTCC
T ss_pred EcHHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC----HHHHHHHHHHCCCEEEccccCCCCCC
Confidence 34544444444433 244554 78888888999999998855443 4467889999999976 23345
Q ss_pred eeEEeCHHHHHHH
Q 013058 96 TTYRLNSTFQSNL 108 (450)
Q Consensus 96 ~~~~Ln~~F~~~l 108 (450)
..|..++.|-+-|
T Consensus 148 ~ly~tT~~fL~~F 160 (162)
T 1t6s_A 148 LQYGTTEVFLDLF 160 (162)
T ss_dssp EEEEECHHHHHHT
T ss_pred eEEEECHHHHHhc
Confidence 7799999998754
No 28
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=29.22 E-value=1.3e+02 Score=28.46 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHhcC--CCCCChHHHHhhcCCcc--hhHHHHHHHHHhcCceeeecCCCceeEEeCHHHHHHHHHH
Q 013058 40 LPPLAKKYVMQMFYI--DGAIPAKMMEEWVLPDG--FTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKH 111 (450)
Q Consensus 40 Lp~lak~~vmrlL~~--~~~v~~~~l~~W~~~~~--~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~F~~~lr~a 111 (450)
+|.-|+..|+.+|+- +.+|+.+.+-.++..=+ ......|+.+|.+=+.+...+.| |.|++.=++.++.+
T Consensus 1 ~~~~arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~G---Y~LT~~~~~~~~~~ 73 (247)
T 3kfw_X 1 MSLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSADG---YRLSDRLLARQRRQ 73 (247)
T ss_dssp -CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETTE---EEECHHHHHHHHHH
T ss_pred CCCCCceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCCc---eeeCHHHHHHHHHH
Confidence 367789999999876 44689999999888755 44579999999999999875433 99999877766644
No 29
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=28.16 E-value=2e+02 Score=21.87 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=51.9
Q ss_pred HhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecCC-----C--ceeEEeCHHHHHHHH
Q 013058 37 LRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKK-----K--ETTYRLNSTFQSNLR 109 (450)
Q Consensus 37 fR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~-----~--~~~~~Ln~~F~~~lr 109 (450)
...|.+-....+..++..+++++.+++..-+.- ++......++.|.+.+++...++ | ...|.+++.+.+.++
T Consensus 16 ~~~l~~~~~~~l~~l~~~~~~~t~~ela~~l~i-s~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~ 94 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEIEKPITSEELADIFKL-SKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIR 94 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHcCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHH
Confidence 346666666666666654778999999987754 46778899999999999975211 1 245778887766665
Q ss_pred HHH
Q 013058 110 KHL 112 (450)
Q Consensus 110 ~aL 112 (450)
..+
T Consensus 95 ~~~ 97 (109)
T 2d1h_A 95 NDL 97 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 30
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=27.90 E-value=39 Score=25.64 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCCCChHHHHhhcCCc---chhHHHHHHHHHhcCceeeec
Q 013058 44 AKKYVMQMFYIDGAIPAKMMEEWVLPD---GFTKHRVAIDRLVQLRLFSEE 91 (450)
Q Consensus 44 ak~~vmrlL~~~~~v~~~~l~~W~~~~---~~~~~~~al~~L~~L~I~~~~ 91 (450)
++..||..||..++++..++...+..+ +.......+++|.+-+++...
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456699999988899999998877532 467789999999999999764
No 31
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=27.41 E-value=1.1e+02 Score=25.69 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=53.9
Q ss_pred HHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeec--C--CCceeEEeCHHHHH
Q 013058 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE--K--KKETTYRLNSTFQS 106 (450)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~F~~ 106 (450)
..+|..+..--+-.|+..|. +++....++..-+..-+.......|+.|.+-+++... + +....|.|++.=++
T Consensus 26 ~~~l~~l~~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~ 101 (131)
T 1yyv_A 26 REVLKHVTSRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQ 101 (131)
T ss_dssp HHHHHHHHSHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHH
Confidence 45566666666667888887 7889999999987545578899999999999999752 1 12367889986544
No 32
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=27.20 E-value=1e+02 Score=24.21 Aligned_cols=59 Identities=5% Similarity=-0.008 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecCCCceeEEeCHH
Q 013058 45 KKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNST 103 (450)
Q Consensus 45 k~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~ 103 (450)
+.-|+.+|...+|.+..++..=..-+..+..+..|..|.+=+.+.....|...|.|++.
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~ 71 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDK 71 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHh
Confidence 55577889999999999999888777655889999999999999754335568988875
No 33
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=25.57 E-value=48 Score=26.69 Aligned_cols=25 Identities=12% Similarity=0.505 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q 013058 338 KESLYNAFENGITAEQIISFLQQNA 362 (450)
Q Consensus 338 ReSv~~Al~~GITA~QII~fL~~hA 362 (450)
|.-|++-+..|=|-+||++|+..+-
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~RY 73 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 7789999999999999999998653
No 34
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=24.33 E-value=52 Score=26.90 Aligned_cols=25 Identities=12% Similarity=0.513 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q 013058 338 KESLYNAFENGITAEQIISFLQQNA 362 (450)
Q Consensus 338 ReSv~~Al~~GITA~QII~fL~~hA 362 (450)
|.-|++-+..|=|-+||++|+...-
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 7789999999999999999998653
No 35
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.52 E-value=1.2e+02 Score=22.84 Aligned_cols=58 Identities=5% Similarity=0.181 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCC--CCCChHHHHhhcC----CcchhHHHHHHHHHhcCceeeecC--CCceeEEeC
Q 013058 44 AKKYVMQMFYID--GAIPAKMMEEWVL----PDGFTKHRVAIDRLVQLRLFSEEK--KKETTYRLN 101 (450)
Q Consensus 44 ak~~vmrlL~~~--~~v~~~~l~~W~~----~~~~~~~~~al~~L~~L~I~~~~~--~~~~~~~Ln 101 (450)
.+..|+.+|... .+++..++..-++ .-+....-..|+.|.+.+++.... ++...|.++
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~~ 83 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT 83 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeecC
Confidence 456688888764 6899999988884 345778889999999999997632 344566654
No 36
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=23.23 E-value=71 Score=27.10 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=64.5
Q ss_pred EEEeeCceEEeecC-ChhHHHHHHHHH-hhhhcCCceEEEEeCHHHHHHHHHcCC-CHHHHHHHHHhcCCccccccCCCC
Q 013058 297 IVVETNFRMYAYST-SKLHCEILRLFS-KVEYQLPNLIVGAITKESLYNAFENGI-TAEQIISFLQQNAHPRVADRMPSV 373 (450)
Q Consensus 297 IIvETNFrvYAYT~-S~lqiaiL~lF~-~l~~r~PNlvvg~iTReSv~~Al~~GI-TA~QII~fL~~hAHp~m~~~~~~l 373 (450)
++|.||.=||.+.. .+.+-...+++. .+...-..+++..++-..+...+.+.. .+.+.+..|... +.+ .++
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~--~~~----~v~ 76 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVES--GVL----NII 76 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTT--SSS----EEE
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhC--CCe----EEE
Confidence 78999999998886 566666667776 554333557777777777776665421 566666665321 211 255
Q ss_pred ChhHHHHHHHHHHhc---Cc--eeeecceeecCCCCHHHHHHHHHHHHHcCeEeeecCC
Q 013058 374 PENVCDQIRLWESDL---NR--VEMTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDPK 427 (450)
Q Consensus 374 P~tV~dQIrLWe~Er---~R--~~~~~g~Ly~~f~s~~~f~~v~~ya~~~g~llw~~~~ 427 (450)
|.+-.+-.+-|+.-. ++ +.+.|+ .++..|+..|+.++..+.
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~~~l~~~Da-------------li~A~A~~~g~~l~T~D~ 122 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYEKGFSYTDA-------------ISEVVAEELKLKLISYDS 122 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTSTTCCHHHH-------------HHHHHHHHHTCEEECSCT
T ss_pred eCCHHHHHHHHHHHHHHhccCCCCHhHH-------------HHHHHHHHcCCEEEEeCc
Confidence 544333333333322 11 222221 224677888888888663
No 37
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=23.21 E-value=1.4e+02 Score=24.85 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.4
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHHhcCCccccccCCCCChhHHHHHHHHHHhc
Q 013058 336 ITKESLYNA----FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDL 388 (450)
Q Consensus 336 iTReSv~~A----l~~GITA~QII~fL~~hAHp~m~~~~~~lP~tV~dQIrLWe~Er 388 (450)
++|...--| ...|.+.++++.++++. +|.+ ..-+....|++.||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPII-----SPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHHHHHHHHHHHHHH
Confidence 588876433 24799999999999876 4432 22356899999999874
No 38
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=22.33 E-value=1.3e+02 Score=22.70 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=37.7
Q ss_pred eecCC-CCHHHHHHHHHHHH--HcCeEeeecCC----CceEEEeccccHHHHHHHhhc
Q 013058 398 YYDEF-PSRDVFEAACDYAR--DQSGLLWEDPK----KMRLVVKAEIHMHMREFLRGQ 448 (450)
Q Consensus 398 Ly~~f-~s~~~f~~v~~ya~--~~g~llw~~~~----kr~~~V~~~~~~~vr~f~k~~ 448 (450)
+|+=. .+.+..+.+.+..+ ..++-.|..+. .-.++|+++.-+.+++|+++.
T Consensus 11 ~~rV~~~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 11 IFVIVPTNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp EEEECCCSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 44433 45667777777776 67889998653 347899999999999999864
No 39
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.59 E-value=41 Score=30.63 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred hhcCCceEEEEeCHHHHHHHHHcCCC-HHHHHHHHHhcCCccccccCCCCChhHHHHHHHHHHhcCceeeecceeecCCC
Q 013058 325 EYQLPNLIVGAITKESLYNAFENGIT-AEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFP 403 (450)
Q Consensus 325 ~~r~PNlvvg~iTReSv~~Al~~GIT-A~QII~fL~~hAHp~m~~~~~~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~f~ 403 (450)
.|-+|++.+|-|=|+.+ ++|-. ..++-.|+.+ +..+|..++-++- .+|+.-.+|++++.|+
T Consensus 23 ~~g~~~istGdllR~~i----~~~t~lg~~~~~~~~~---------G~lvpd~iv~~lv-----~~~l~~~~~~ilDGfP 84 (206)
T 3sr0_A 23 EKGFVHISTGDILREAV----QKGTPLGKKAKEYMER---------GELVPDDLIIALI-----EEVFPKHGNVIFDGFP 84 (206)
T ss_dssp HHCCEEEEHHHHHHHHH----HHTCHHHHHHHHHHHH---------TCCCCHHHHHHHH-----HHHCCSSSCEEEESCC
T ss_pred HHCCeEEcHHHHHHHHH----HhcChhhhhHHHHHhc---------CCcCCHHHHHHHH-----HHhhccCCceEecCCc
Confidence 46688888886656544 44432 2334444443 3489999887664 2345557899999998
Q ss_pred CH-HHHHHHHHHHHHcCe
Q 013058 404 SR-DVFEAACDYARDQSG 420 (450)
Q Consensus 404 s~-~~f~~v~~ya~~~g~ 420 (450)
-. +..+.+-+...+.|.
T Consensus 85 Rt~~Qa~~l~~~l~~~~~ 102 (206)
T 3sr0_A 85 RTVKQAEALDEMLEKKGL 102 (206)
T ss_dssp CSHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhHHHhcc
Confidence 75 555666666666653
No 40
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=21.35 E-value=62 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.0
Q ss_pred CHHHHHHHHHcCCCHHHHHHHHHhcCCccccccCCCCChhHHHHHH
Q 013058 337 TKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIR 382 (450)
Q Consensus 337 TReSv~~Al~~GITA~QII~fL~~hAHp~m~~~~~~lP~tV~dQIr 382 (450)
.|+-+++. ..+|-+++++.+.-+|+. .||+.|...+.
T Consensus 46 ~r~~i~~~--~~vt~~~L~~~I~P~Ar~-------~VP~~VK~Ell 82 (96)
T 3mhs_B 46 TKSEMNIN--ESTNFTQILSTVEPKALE-------MVSDSTRETVL 82 (96)
T ss_dssp HHHHHHHH--TCCCHHHHHHHHHHHHHH-------TSCHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHhHHHHH-------HCCHHHHHHHH
Confidence 34445444 799999999999988877 89999977653
No 41
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=20.74 E-value=50 Score=29.26 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.8
Q ss_pred ChhHHHHHHhCCCccCCC-CCCccchhhhhhh
Q 013058 165 SSSMMKVFQRGLLSRRDK-EAPRLTESGFQFL 195 (450)
Q Consensus 165 s~~v~~lL~~~gL~~~~~-~~~~IT~~GfqFL 195 (450)
-..+++-|...||++.+. ++..||++|-++|
T Consensus 101 iR~~LQqLE~~g~vek~~~~GR~lT~~G~~~L 132 (144)
T 3u5c_T 101 NRKVLQALEKIGIVEISPKGGRRISENGQRDL 132 (144)
T ss_dssp HHHHHHHHHHTTSEECCSSSSCEECHHHHHHH
T ss_pred HHHHHHHHHHCCCeeecCCCCcEECHhHHHHH
Confidence 345677788999999863 6779999998875
No 42
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=20.24 E-value=1.4e+02 Score=26.47 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=51.8
Q ss_pred HHHHhhCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhcCceeeecC----CC--ceeEEeCH
Q 013058 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK----KK--ETTYRLNS 102 (450)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~----~~--~~~~~Ln~ 102 (450)
-.+|+.|-+-.+.-|+.+|. +++....++..=+..-+.......|+.|.+-+|+...+ +| ...|.+++
T Consensus 14 ~~~~~~La~P~Rl~il~~L~-~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~ 87 (182)
T 4g6q_A 14 SSLVDLLHHPLRWRITQLLI-GRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNT 87 (182)
T ss_dssp HHHHHHTTSHHHHHHHHHTT-TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECT
T ss_pred HHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecc
Confidence 37899888888888999885 67888888877665555677888899999999997521 12 24577765
Done!