Query 013059
Match_columns 450
No_of_seqs 314 out of 781
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 23:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.7 8.3E-17 1.8E-21 138.5 7.3 78 336-418 1-83 (102)
2 PF00612 IQ: IQ calmodulin-bin 98.0 7.6E-06 1.6E-10 51.3 3.5 21 118-138 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.6 0.00015 3.2E-09 82.2 7.9 65 116-184 671-736 (862)
4 smart00015 IQ Short calmodulin 97.5 9.6E-05 2.1E-09 48.5 2.9 22 117-138 2-23 (26)
5 PTZ00014 myosin-A; Provisional 96.7 0.0025 5.5E-08 72.7 6.6 41 119-159 778-819 (821)
6 KOG0160 Myosin class V heavy c 96.7 0.0056 1.2E-07 69.9 9.1 68 114-184 692-759 (862)
7 KOG0520 Uncharacterized conser 96.7 0.0014 3E-08 75.1 3.9 71 116-186 808-886 (975)
8 PF00612 IQ: IQ calmodulin-bin 95.2 0.026 5.6E-07 35.2 3.1 19 141-159 2-20 (21)
9 KOG0164 Myosin class I heavy c 95.0 0.087 1.9E-06 59.1 8.4 56 119-185 697-753 (1001)
10 KOG2128 Ras GTPase-activating 94.1 0.14 3E-06 60.9 8.0 71 116-186 563-642 (1401)
11 smart00015 IQ Short calmodulin 92.1 0.15 3.3E-06 33.3 2.6 19 141-159 4-22 (26)
12 COG5022 Myosin heavy chain [Cy 92.0 0.32 6.9E-06 58.2 6.8 42 116-157 743-785 (1463)
13 PTZ00014 myosin-A; Provisional 90.3 0.57 1.2E-05 54.0 6.7 39 142-183 779-817 (821)
14 KOG0942 E3 ubiquitin protein l 83.5 0.89 1.9E-05 52.4 3.1 28 114-141 25-52 (1001)
15 KOG0520 Uncharacterized conser 83.3 0.84 1.8E-05 53.1 2.9 64 119-182 834-930 (975)
16 KOG4427 E3 ubiquitin protein l 82.5 1.2 2.6E-05 50.6 3.7 24 115-138 27-50 (1096)
17 KOG0162 Myosin class I heavy c 80.4 3.2 7E-05 47.3 5.9 37 120-160 698-736 (1106)
18 KOG0377 Protein serine/threoni 76.5 4.1 8.8E-05 44.1 5.1 34 116-149 15-48 (631)
19 KOG0161 Myosin class II heavy 75.8 7.2 0.00016 49.0 7.6 40 142-181 775-814 (1930)
20 KOG2128 Ras GTPase-activating 74.3 3.5 7.5E-05 49.7 4.3 48 117-164 591-646 (1401)
21 KOG0163 Myosin class VI heavy 62.5 11 0.00024 43.3 5.0 35 116-150 811-846 (1259)
22 COG5022 Myosin heavy chain [Cy 60.0 19 0.0004 44.0 6.5 49 131-179 735-784 (1463)
23 KOG0161 Myosin class II heavy 58.4 18 0.00038 45.7 6.1 41 118-158 773-817 (1930)
24 PF08763 Ca_chan_IQ: Voltage g 42.5 30 0.00066 24.8 2.8 21 117-137 8-28 (35)
25 PF15157 IQ-like: IQ-like 37.6 30 0.00065 29.7 2.6 20 118-137 47-66 (97)
26 PF10115 HlyU: Transcriptional 32.4 18 0.0004 31.1 0.5 14 1-14 1-14 (91)
27 KOG4427 E3 ubiquitin protein l 23.9 1.1E+02 0.0025 35.6 4.9 25 140-164 30-54 (1096)
28 KOG0942 E3 ubiquitin protein l 21.4 1.6E+02 0.0035 34.9 5.6 28 138-165 27-54 (1001)
29 KOG1419 Voltage-gated K+ chann 21.1 55 0.0012 36.7 1.8 21 115-135 337-357 (654)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.67 E-value=8.3e-17 Score=138.51 Aligned_cols=78 Identities=45% Similarity=0.540 Sum_probs=55.5
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccccchhhhhcccCCCccchhh----hccCCccC-CC
Q 013059 336 NSPQVSSASYRPGSSARRGPFTPTRSEYSWGYFSGCIGHPNYMANTESSRAKVRSLSAPRQRLEL----ERYGSTKR-SA 410 (450)
Q Consensus 336 ~sP~~~S~ssr~~~s~rrsp~tP~rsd~s~~~~~~~p~~PsYMAnTESSKAKvRSQSAPKQRpe~----Er~~S~RR-Sl 410 (450)
|+|++++...+.... ....++.+.++.+..+. .+|||||+|||+|||+|+||+||||++. ++...++| ||
T Consensus 1 nsPr~~s~~~~~~~~--~~~~s~~~~~~~~~s~~---~~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~ 75 (102)
T PF13178_consen 1 NSPRLRSASSRSSSS--PSRSSPQKSSCRRSSFG---SLPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSL 75 (102)
T ss_pred CCCCccCcccCCCCC--cccCCCcccccccCcCC---CCCCccchhhhhhhhhhccCCcccCCCcccccccccccccccc
Confidence 577765554332221 23334566666665544 2999999999999999999999999996 56667788 99
Q ss_pred CCCCCCCC
Q 013059 411 HGFWDGSI 418 (450)
Q Consensus 411 ~g~~~~~~ 418 (450)
++......
T Consensus 76 ~~~~~~~~ 83 (102)
T PF13178_consen 76 PGSSNSGS 83 (102)
T ss_pred CCCCCCCc
Confidence 98765443
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.99 E-value=7.6e-06 Score=51.28 Aligned_cols=21 Identities=52% Similarity=0.754 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALK 138 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~ 138 (450)
+.|||+||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.58 E-value=0.00015 Score=82.24 Aligned_cols=65 Identities=31% Similarity=0.435 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059 116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS 184 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~ 184 (450)
....+++.||+.||||+.|+.|..+| +++.||+++||.++|+ ..+ ...|++.||..+|++..|+.
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHH
Confidence 34567788999999999999999999 8999999999999999 222 44466677777777766553
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.49 E-value=9.6e-05 Score=48.48 Aligned_cols=22 Identities=55% Similarity=0.757 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013059 117 HELAAVRIQCAFRGYLARRALK 138 (450)
Q Consensus 117 ee~AAi~IQsafRGyLaRr~~~ 138 (450)
++.+|++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 5
>PTZ00014 myosin-A; Provisional
Probab=96.73 E-value=0.0025 Score=72.72 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Q 013059 119 LAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 119 ~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~ 159 (450)
..++.||++||||++|+.|..++ +++.||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36889999999999999999877 999999999999998763
No 6
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.71 E-value=0.0056 Score=69.85 Aligned_cols=68 Identities=26% Similarity=0.285 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059 114 RWQHELAAVRIQCAFRGYLARRALKALKALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS 184 (450)
Q Consensus 114 ~~ree~AAi~IQsafRGyLaRr~~~alr~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~ 184 (450)
+++...+++.||+.+||+++|+......+.+.||..+|+++.|++|... ..+++.||+.+|+..+|..
T Consensus 692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccc
Confidence 3567789999999999999998433334899999999999999999544 4588999999999999883
No 7
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.68 E-value=0.0014 Score=75.08 Aligned_cols=71 Identities=30% Similarity=0.348 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCcchh
Q 013059 116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKR-------MQTLVKVQARVRASRTPTSES 186 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~-------~~a~v~iQs~vR~~~~R~~e~ 186 (450)
....||..||..||||+.|+.+..++ -+|+||+.|||+.+|++|...... +.++-++|+-+|+++.+...+
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 44578999999999999999999999 899999999999999999844332 346668899999988776554
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.20 E-value=0.026 Score=35.21 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 013059 141 KALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 141 r~ivrLQAlvRG~~vRrq~ 159 (450)
+++|.||+.+||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999987
No 9
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=94.96 E-value=0.087 Score=59.07 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 013059 119 LAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSE 185 (450)
Q Consensus 119 ~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~e 185 (450)
.-++.||++||||++|..|+.|| +++-|+ .+|.+.+|- .+..||.++|+.+.++..
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcccc
Confidence 45899999999999999999999 444445 456443332 334578888888766543
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.11 E-value=0.14 Score=60.85 Aligned_cols=71 Identities=32% Similarity=0.479 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHH-HH-HHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCcchh
Q 013059 116 QHELAAVRIQCAFRGYLA---RRA-LK-ALKALVKLQALVRGHIVRKQTADMLK----RMQTLVKVQARVRASRTPTSES 186 (450)
Q Consensus 116 ree~AAi~IQsafRGyLa---Rr~-~~-alr~ivrLQAlvRG~~vRrq~~~tl~----~~~a~v~iQs~vR~~~~R~~e~ 186 (450)
+.....+.||.+||||+. +.. +. .++-+|++|++.||+++|+.+...+. ||.+.++||+.+|++..|..-.
T Consensus 563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence 366788999999999994 111 12 23389999999999999999875544 6889999999999999887543
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.10 E-value=0.15 Score=33.27 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 013059 141 KALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 141 r~ivrLQAlvRG~~vRrq~ 159 (450)
+.++.||+.+||+++|++|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999997
No 12
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=91.98 E-value=0.32 Score=58.25 Aligned_cols=42 Identities=36% Similarity=0.477 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHH
Q 013059 116 QHELAAVRIQCAFRGYLARRALKA-LKALVKLQALVRGHIVRK 157 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~a-lr~ivrLQAlvRG~~vRr 157 (450)
.-...++.||++|||++.|++|.+ ++.+..+|.+.+|.++|+
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~ 785 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRR 785 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 345689999999999999988764 335555555555555554
No 13
>PTZ00014 myosin-A; Provisional
Probab=90.31 E-value=0.57 Score=54.01 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059 142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT 183 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~ 183 (450)
.++.||+.+||++.|++|... .+++++||+.+|++..++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 567889999999999999443 668999999999998764
No 14
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.45 E-value=0.89 Score=52.39 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013059 114 RWQHELAAVRIQCAFRGYLARRALKALK 141 (450)
Q Consensus 114 ~~ree~AAi~IQsafRGyLaRr~~~alr 141 (450)
.-++|.+|++||+.||||++|+..+.+-
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999766543
No 15
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=83.27 E-value=0.84 Score=53.12 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---H--------HHHHHHHhhhHHHHHHHH----------------------HHHHH
Q 013059 119 LAAVRIQCAFRGYLARRALKALK---A--------LVKLQALVRGHIVRKQTA----------------------DMLKR 165 (450)
Q Consensus 119 ~AAi~IQsafRGyLaRr~~~alr---~--------ivrLQAlvRG~~vRrq~~----------------------~tl~~ 165 (450)
.=+|+||+++|||-.|+.|+.|- + --++|+-+||+..|.-.. ...+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999998877 1 123477778887765321 11112
Q ss_pred HHHHHHHHHHHHHhccC
Q 013059 166 MQTLVKVQARVRASRTP 182 (450)
Q Consensus 166 ~~a~v~iQs~vR~~~~R 182 (450)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 35999999999998876
No 16
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=1.2 Score=50.59 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 013059 115 WQHELAAVRIQCAFRGYLARRALK 138 (450)
Q Consensus 115 ~ree~AAi~IQsafRGyLaRr~~~ 138 (450)
.+++.||+.||..+|||++|+.++
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999876
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=80.36 E-value=3.2 Score=47.25 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHH
Q 013059 120 AAVRIQCAFRGYLARRALKALK--ALVKLQALVRGHIVRKQTA 160 (450)
Q Consensus 120 AAi~IQsafRGyLaRr~~~alr--~ivrLQAlvRG~~vRrq~~ 160 (450)
=|.+||.+||.|++||.|..|| +.- |+-|...||++.
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~ree~t~----ll~gKKeRRr~S 736 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMREEATK----LLLGKKERRRYS 736 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH
Confidence 5899999999999999999999 333 345666676663
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=76.47 E-value=4.1 Score=44.11 Aligned_cols=34 Identities=29% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013059 116 QHELAAVRIQCAFRGYLARRALKALKALVKLQAL 149 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~alr~ivrLQAl 149 (450)
+-.+|||.||..||+|.||..-+.--...-+|++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 5678999999999999999876654455555665
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.76 E-value=7.2 Score=49.00 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013059 142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRT 181 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~ 181 (450)
-|+.+||.|||+++|+-+...+..+.++..||..+|.+..
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~ 814 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK 814 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999988888888899999999988853
No 20
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=74.25 E-value=3.5 Score=49.66 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHHHHH
Q 013059 117 HELAAVRIQCAFRGYLARRALKALK--------ALVKLQALVRGHIVRKQTADMLK 164 (450)
Q Consensus 117 ee~AAi~IQsafRGyLaRr~~~alr--------~ivrLQAlvRG~~vRrq~~~tl~ 164 (450)
...-++++|++.||+++|+.+.... .+++||..+|+.+.|+.|.....
T Consensus 591 ~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 591 AKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 4556899999999999999877655 79999999999999999865554
No 21
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=62.46 E-value=11 Score=43.29 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 013059 116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALV 150 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlv 150 (450)
=+..+.+++|+..||||+|++++.-. ++.++-+|.
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 45677899999999999999876433 555554443
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=60.04 E-value=19 Score=44.05 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013059 131 YLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRAS 179 (450)
Q Consensus 131 yLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~ 179 (450)
.|.-.+-..+. .+++||+.|||+.+|+++...++.++++..+|.-++.+
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~ 784 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR 784 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 34433444444 78999999999999999977776666555555444444
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.43 E-value=18 Score=45.74 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQ 158 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq 158 (450)
..-.+.+|+.+||||+|+.|.... +|..||.=+|-++..|.
T Consensus 773 s~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 773 SQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345778899999999999987655 89999998888866653
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=42.53 E-value=30 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013059 117 HELAAVRIQCAFRGYLARRAL 137 (450)
Q Consensus 117 ee~AAi~IQsafRGyLaRr~~ 137 (450)
.--|+..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999863
No 25
>PF15157 IQ-like: IQ-like
Probab=37.62 E-value=30 Score=29.72 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRAL 137 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~ 137 (450)
|--+.+||.+||-||+|...
T Consensus 47 eskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCC
Confidence 44577899999999999763
No 26
>PF10115 HlyU: Transcriptional activator HlyU; InterPro: IPR018772 This is a family of hypothetical prokaryotic proteins, with no known function. One of the proteins in this entry corresponds to the transcriptional activator HlyU, indicating a possible similar role in other members.
Probab=32.40 E-value=18 Score=31.10 Aligned_cols=14 Identities=57% Similarity=1.032 Sum_probs=12.1
Q ss_pred CccccccccCCCCC
Q 013059 1 MGFFRRLFGAKKAG 14 (450)
Q Consensus 1 mgw~r~~~~~kk~~ 14 (450)
||+|++||||+++.
T Consensus 1 M~~~s~LFGg~~~~ 14 (91)
T PF10115_consen 1 MSFFSRLFGGGKKS 14 (91)
T ss_pred CcHHHHhhCCCCCC
Confidence 99999999988763
No 27
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=1.1e+02 Score=35.59 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 013059 140 LKALVKLQALVRGHIVRKQTADMLK 164 (450)
Q Consensus 140 lr~ivrLQAlvRG~~vRrq~~~tl~ 164 (450)
..+.+.||+.+|||++||++...++
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999875444
No 28
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.42 E-value=1.6e+02 Score=34.87 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 013059 138 KALKALVKLQALVRGHIVRKQTADMLKR 165 (450)
Q Consensus 138 ~alr~ivrLQAlvRG~~vRrq~~~tl~~ 165 (450)
++.++.|++|+++||+.+|++.....+.
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445999999999999999987655553
No 29
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.07 E-value=55 Score=36.67 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013059 115 WQHELAAVRIQCAFRGYLARR 135 (450)
Q Consensus 115 ~ree~AAi~IQsafRGyLaRr 135 (450)
.+...||-.||.+||-|.+-.
T Consensus 337 rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hhcchHHHHHHHHHHHHhccc
Confidence 455679999999999998765
Done!