Query 013059
Match_columns 450
No_of_seqs 314 out of 781
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 7.9E-11 2.7E-15 89.8 7.5 50 116-165 3-53 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.9 2.4E-09 8.2E-14 78.4 6.7 42 118-159 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.7 1.6E-08 5.5E-13 115.6 8.8 71 114-185 812-883 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.7 2.7E-08 9.2E-13 113.8 9.6 66 118-184 768-834 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.0 5.9E-06 2E-10 60.2 4.5 41 142-183 5-45 (48)
6 2l53_B CAM, voltage-gated sodi 97.7 2E-05 6.9E-10 53.4 3.5 23 115-137 3-25 (31)
7 2kxw_B Sodium channel protein 97.7 1.6E-05 5.4E-10 52.3 2.6 22 115-136 3-24 (27)
8 1wdc_A Scallop myosin; calcium 97.4 0.00028 9.5E-09 54.5 6.7 41 118-158 6-50 (64)
9 2ix7_C Myosin-5A; contractIle 97.4 0.00017 5.7E-09 54.5 4.6 41 141-184 6-46 (58)
10 2bl0_A Major plasmodial myosin 97.3 0.00032 1.1E-08 54.1 5.5 39 143-181 7-45 (63)
11 2bl0_A Major plasmodial myosin 97.3 0.00028 9.7E-09 54.4 4.8 42 118-159 4-49 (63)
12 1wdc_A Scallop myosin; calcium 97.2 0.00034 1.1E-08 54.0 5.0 42 142-183 8-49 (64)
13 1kk8_A Myosin heavy chain, str 97.0 0.00072 2.5E-08 75.7 7.1 42 118-159 779-824 (837)
14 3gn4_A Myosin-VI; unconvention 96.1 0.0064 2.2E-07 54.8 5.5 35 116-150 43-78 (148)
15 1i84_S Smooth muscle myosin he 96.1 0.0053 1.8E-07 70.9 6.2 40 119-158 793-836 (1184)
16 1kk8_A Myosin heavy chain, str 95.4 0.022 7.4E-07 63.9 7.2 42 142-183 781-822 (837)
17 1i84_S Smooth muscle myosin he 93.6 0.087 3E-06 60.9 7.0 53 132-184 783-836 (1184)
18 4dck_A Sodium channel protein 92.0 0.12 4.3E-06 47.4 4.3 27 113-139 125-151 (168)
19 1w7j_A Myosin VA; motor protei 90.0 0.22 7.4E-06 55.6 4.6 24 118-141 768-791 (795)
20 4anj_A Unconventional myosin-V 89.0 0.6 2.1E-05 53.6 7.3 41 118-159 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 79.6 3.7 0.00013 36.9 6.5 25 142-166 47-71 (148)
22 4anj_A Unconventional myosin-V 51.9 10 0.00035 43.6 4.3 43 141-186 775-817 (1052)
23 1w7j_A Myosin VA; motor protei 43.6 24 0.00083 39.3 5.5 22 142-163 770-791 (795)
24 3dvk_B Voltage-dependent R-typ 34.1 17 0.00059 22.9 1.4 19 117-135 5-23 (23)
25 2f3y_B Voltage-dependent L-typ 29.2 36 0.0012 21.9 2.3 18 120-137 4-21 (26)
26 2be6_D Voltage-dependent L-typ 25.8 53 0.0018 22.8 2.8 22 116-137 9-30 (37)
27 3bxl_B CAM, voltage-dependent 25.4 50 0.0017 21.3 2.4 18 119-136 3-20 (26)
28 1m46_B IQ4, IQ4 motif from MYO 22.9 1E+02 0.0036 19.3 3.5 21 140-160 3-23 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.15 E-value=7.9e-11 Score=89.79 Aligned_cols=50 Identities=28% Similarity=0.406 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Q 013059 116 QHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKR 165 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~ 165 (450)
+.+.|||+||+.||||++|+.|..++ ++|.||+.+||+++|+.+......
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~ 53 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRT 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999 999999999999999999655443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.4e-09 Score=78.42 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK---ALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr---~ivrLQAlvRG~~vRrq~ 159 (450)
..|||.||+.|||||+|+.|..++ ++|.||+.+||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 358999999999999999999887 899999999999999986
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.72 E-value=1.6e-08 Score=115.63 Aligned_cols=71 Identities=31% Similarity=0.370 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 013059 114 RWQHELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSE 185 (450)
Q Consensus 114 ~~ree~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~e 185 (450)
.++++.||++||++||||++|+.|..++ ++|.||+.+||+++|+.+.... ...+++.||+.+|++.+|+..
T Consensus 812 ~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 812 FLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHY 883 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHT
T ss_pred ccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999 9999999999999999986544 445888899999998877643
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.69 E-value=2.7e-08 Score=113.82 Aligned_cols=66 Identities=29% Similarity=0.416 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS 184 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~ 184 (450)
..||++||++||||++|+.|+.++ +++.||+.+||+++|+++.. ++...|+++||+.||++.+|+.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHHH
Confidence 579999999999999999999998 99999999999999999854 4566788888888888887754
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.99 E-value=5.9e-06 Score=60.19 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059 142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT 183 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~ 183 (450)
++|.||+.+||+++|+.+.. ++...++++||+.+||+.+|.
T Consensus 5 a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 5 AIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHH
Confidence 78999999999999999954 445569999999999998764
No 6
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.74 E-value=2e-05 Score=53.39 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 013059 115 WQHELAAVRIQCAFRGYLARRAL 137 (450)
Q Consensus 115 ~ree~AAi~IQsafRGyLaRr~~ 137 (450)
.+||.+|++||.+||+||.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 37999999999999999999864
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.72 E-value=1.6e-05 Score=52.33 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 013059 115 WQHELAAVRIQCAFRGYLARRA 136 (450)
Q Consensus 115 ~ree~AAi~IQsafRGyLaRr~ 136 (450)
.+||.||++||.+||+||.++.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3799999999999999999864
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.44 E-value=0.00028 Score=54.51 Aligned_cols=41 Identities=32% Similarity=0.453 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQ 158 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq 158 (450)
...++.||+..||||+|+.|..+. ++..||.-+|+++.++.
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345666777777777777666653 55566666666666553
No 9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.38 E-value=0.00017 Score=54.50 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059 141 KALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS 184 (450)
Q Consensus 141 r~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~ 184 (450)
.++|.||+.+||+++|+.|..+ ..+++.||+.+||+.+|..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999543 3589999999999998764
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.31 E-value=0.00032 Score=54.08 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=18.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013059 143 LVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRT 181 (450)
Q Consensus 143 ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~ 181 (450)
++.||+.+||+++|+.+...+...+|+..||..+|++..
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~ 45 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLE 45 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444454455555555443
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.26 E-value=0.00028 Score=54.35 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq~ 159 (450)
...++.||+..||||+|+.|..+. ++..||.-+|+++.++..
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 456899999999999999999984 788999999999998753
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.24 E-value=0.00034 Score=54.04 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059 142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT 183 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~ 183 (450)
.++.||+.+||+++|+.+...+...+|+..||..+|++..++
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999999999988654
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.04 E-value=0.00072 Score=75.72 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq~ 159 (450)
..+|+.||++|||||+|+.|+.++ +++.||..+||+++||.+
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 357899999999999999999883 889999999999999875
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.11 E-value=0.0064 Score=54.84 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 013059 116 QHELAAVRIQCAFRGYLARRALK-ALKALVKLQALV 150 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~~-alr~ivrLQAlv 150 (450)
=+..|+|+||+++||||+|+.++ .+.|++++.+|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46788999999999999999987 556888887764
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.10 E-value=0.0053 Score=70.87 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHH
Q 013059 119 LAAVRIQCAFRGYLARRALKALK----ALVKLQALVRGHIVRKQ 158 (450)
Q Consensus 119 ~AAi~IQsafRGyLaRr~~~alr----~ivrLQAlvRG~~vRrq 158 (450)
.+++.||+.|||||+|+.|..++ +++.||..+||++.|+.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999885 89999999999999865
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.37 E-value=0.022 Score=63.90 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013059 142 ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPT 183 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~ 183 (450)
.++.||+.+||++.|++|...+....|++.||+.+|++..++
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r 822 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 822 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999888777889999999999988764
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.62 E-value=0.087 Score=60.89 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=42.4
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013059 132 LARRALKALK-ALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTS 184 (450)
Q Consensus 132 LaRr~~~alr-~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~ 184 (450)
|....-..|. .++.||+.+||++.|+.|...++...+++.||+.+|++..++.
T Consensus 783 LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 783 LEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4433333333 6889999999999999998888888899999999999987653
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.99 E-value=0.12 Score=47.37 Aligned_cols=27 Identities=44% Similarity=0.510 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013059 113 VRWQHELAAVRIQCAFRGYLARRALKA 139 (450)
Q Consensus 113 ~~~ree~AAi~IQsafRGyLaRr~~~a 139 (450)
...+++.||++||.+||.|+.|+.++.
T Consensus 125 ~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 125 RRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 446789999999999999999887655
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=90.03 E-value=0.22 Score=55.61 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK 141 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr 141 (450)
..+|+.||++|||||+|+.|+.+|
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999988
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=89.02 E-value=0.6 Score=53.60 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Q 013059 118 ELAAVRIQCAFRGYLARRALKALK-ALVKLQALVRGHIVRKQT 159 (450)
Q Consensus 118 e~AAi~IQsafRGyLaRr~~~alr-~ivrLQAlvRG~~vRrq~ 159 (450)
..+|+.||. +||||+|+.|+.++ +.+.+|.+.|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777775 79999999999999 888888888887766554
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=79.58 E-value=3.7 Score=36.92 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 013059 142 ALVKLQALVRGHIVRKQTADMLKRM 166 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl~~~ 166 (450)
.+|+||..|||+++|+++.--+..+
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~g~ 71 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRIDGL 71 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6888899999999999985444443
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=51.88 E-value=10 Score=43.60 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh
Q 013059 141 KALVKLQALVRGHIVRKQTADMLKRMQTLVKVQARVRASRTPTSES 186 (450)
Q Consensus 141 r~ivrLQAlvRG~~vRrq~~~tl~~~~a~v~iQs~vR~~~~R~~e~ 186 (450)
..++.||..+||+++|++|..+. .+++.||...|.++.|....
T Consensus 775 ~~~~~~iq~~r~~l~r~~~~k~~---~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 775 DHLAELVKRVNHWLICSRWKKVQ---WCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcc
Confidence 35666666789999999995443 45666666666665554433
No 23
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=43.57 E-value=24 Score=39.30 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 013059 142 ALVKLQALVRGHIVRKQTADML 163 (450)
Q Consensus 142 ~ivrLQAlvRG~~vRrq~~~tl 163 (450)
.++.||+.+||++.|++|..+.
T Consensus 770 ~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 770 ACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999985543
No 24
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=34.13 E-value=17 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH...
Q 013059 117 HELAAVRIQCAFRGYLARR... 135 (450)
Q Consensus 117 ee~AAi~IQsafRGyLaRr... 135 (450)
.--|+..||-.||-+..|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 4678999999999987763
No 25
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=29.17 E-value=36 Score=21.95 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013059 120 AAVRIQCAFRGYLARRAL 137 (450)
Q Consensus 120 AAi~IQsafRGyLaRr~~ 137 (450)
|...||-.||.|..|++-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 557899999999998864
No 26
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=25.78 E-value=53 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013059 116 QHELAAVRIQCAFRGYLARRAL 137 (450)
Q Consensus 116 ree~AAi~IQsafRGyLaRr~~ 137 (450)
-.--|-..||-.||.|..|+.-
T Consensus 9 GKfYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 9 GKFYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999864
No 27
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=25.44 E-value=50 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013059 119 LAAVRIQCAFRGYLARRA 136 (450)
Q Consensus 119 ~AAi~IQsafRGyLaRr~ 136 (450)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999988875
No 28
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=22.86 E-value=1e+02 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 013059 140 LKALVKLQALVRGHIVRKQTA 160 (450)
Q Consensus 140 lr~ivrLQAlvRG~~vRrq~~ 160 (450)
||.|..||.-||-.+-.+|+.
T Consensus 3 lrtitnlqkkirkelkqrqlk 23 (26)
T 1m46_B 3 LRTITNLQKKIRKELKQRQLK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888887777753
Done!