BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013061
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+ +++G+L + E L F G + N+K++ +K ++ Y FVE++ A LQ
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 59
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + N ++NWA S +++ + ++FVGDL +V D L+ F +PS
Sbjct: 60 TLNGKQIENN--IVKINWAFQS---QQSSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPS 113
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286
V+ D TG ++GYGFV F +++ AM M G + RP+RI+ A
Sbjct: 114 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 39/195 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG+L +T+ IL++ F P + K++ID N + Y FV + ++ + A+
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGP-IANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQT 60
Query: 271 MNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATI 330
+NG + ++I+ A Q S SD N +
Sbjct: 61 LNGKQIENNIVKINWAFQS---------------------------QQSSSDDTFN---L 90
Query: 331 FVGALDSDVSDEDLREPFSQFGEILS------VKIPVGKGCGFVQFANSRKDAEVALQKL 384
FVG L+ +V DE LR F F LS ++ +G GFV F S+ DA+ A+ +
Sbjct: 91 FVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT-SQDDAQNAMDSM 149
Query: 385 QGTAIGKQTVRLSWG 399
QG + + +R++W
Sbjct: 150 QGQDLNGRPLRINWA 164
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
++D+T +++GDL +D+ L N F ++ V+ + QTG S GYGFV F S+ A
Sbjct: 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWA 194
+ + S G + +P R+NWA
Sbjct: 143 QNAMDSMQGQDL--NGRPLRINWA 164
>pdb|2DHG|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
In Trna Selenocysteine Associated Protein
Length = 104
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
+ S+FVGDL PDV D +L E F YPS +G KV++D TG +KGYGFV+F DE E+ RA
Sbjct: 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRA 67
Query: 268 MTEMNG-VYCSSRPMRIDVATPKKA 291
+TE G V S+P+R+ VA PK +
Sbjct: 68 LTECQGAVGLGSKPVRLSVAIPKAS 92
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 329 TIFVGALDSDVSDEDLRE------PFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQ 382
++FVG L DV D L E P + G+++ + V KG GFV+F + + AL
Sbjct: 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR-ALT 69
Query: 383 KLQGT-AIGKQTVRLS 397
+ QG +G + VRLS
Sbjct: 70 ECQGAVGLGSKPVRLS 85
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL +D+ L+ F + QTG S+GYGFV+F ++ L
Sbjct: 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70
Query: 177 YSGSLMPNTDQPFRLNWA 194
G++ + +P RL+ A
Sbjct: 71 CQGAVGLGS-KPVRLSVA 87
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 77 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 130
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 131 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 171
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 36/189 (19%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 75
Query: 270 EMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNAT 329
MN +P+RI + Q S +S
Sbjct: 76 TMNFDVIKGKPVRIMWS------------------------------QRDPSLRKSGVGN 105
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAEVALQKLQ 385
IF+ LD + ++ L + FS FG ILS K+ KG GFV F +++ AE A++K+
Sbjct: 106 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF-ETQEAAERAIEKMN 164
Query: 386 GTAIGKQTV 394
G + + V
Sbjct: 165 GMLLNDRKV 173
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 74
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 75 DTMNFDVIKGKPVRIMWSQRDPSLRK 100
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
KV+ D N +KGYGFV F + RA+ +MNG+ + R
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 36/189 (19%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL PDVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNAT 329
MN +P+RI + Q S +S
Sbjct: 71 TMNFDVIKGKPVRIMWS------------------------------QRDPSLRKSGVGN 100
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAEVALQKLQ 385
IF+ LD + ++ L + FS FG ILS K+ KG GFV F +++ AE A++K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF-ETQEAAERAIEKMN 159
Query: 386 GTAIGKQTV 394
G + + V
Sbjct: 160 GMLLNDRKV 168
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G
Sbjct: 14 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG------- 66
Query: 187 QPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID 244
RL T S R +E D ++++ L +T +++ F S++ + ++V++D
Sbjct: 67 --LRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVD 123
Query: 245 SNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TG ++G F+RF +E A+T NG
Sbjct: 124 QTTGLSRGVAFIRFDKRSEAEEAITSFNG 152
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 40/182 (21%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+ V L ++T L+ FSS V+ AK+I D G + GYGFV + + RA+
Sbjct: 5 LIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 63
Query: 271 MNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATI 330
+NG+ S+ +++ A P S +A +
Sbjct: 64 LNGLRLQSKTIKVSYARP--------------------------------SSEVIKDANL 91
Query: 331 FVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVALQKL 384
++ L ++ +D+ + FS+FG I++ ++ V +G F++F + R +AE A+
Sbjct: 92 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF-DKRSEAEEAITSF 150
Query: 385 QG 386
G
Sbjct: 151 NG 152
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEVALQK 383
+ V L +++ ++LR FS GE+ S K+ K G GFV + + KDAE A+
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA-KDAERAINT 63
Query: 384 LQGTAIGKQTVRLSWGR 400
L G + +T+++S+ R
Sbjct: 64 LNGLRLQSKTIKVSYAR 80
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G
Sbjct: 14 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG------- 66
Query: 187 QPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID 244
RL T S R +E D ++++ L +T +++ F S++ + ++V++D
Sbjct: 67 --LRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVD 123
Query: 245 SNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TG ++G F+RF +E A+T NG
Sbjct: 124 QTTGLSRGVAFIRFDKRSEAEEAITSFNG 152
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 40/182 (21%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+ V L ++T L+ FSS V+ AK+I D G + GYGFV + + RA+
Sbjct: 5 LIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 63
Query: 271 MNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATI 330
+NG+ S+ +++ A P S +A +
Sbjct: 64 LNGLRLQSKTIKVSYARP--------------------------------SSEVIKDANL 91
Query: 331 FVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVALQKL 384
++ L ++ +D+ + FS+FG I++ ++ V +G F++F + R +AE A+
Sbjct: 92 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF-DKRSEAEEAITSF 150
Query: 385 QG 386
G
Sbjct: 151 NG 152
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEVALQK 383
+ V L +++ ++LR FS GE+ S K+ K G GFV + + KDAE A+
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA-KDAERAINT 63
Query: 384 LQGTAIGKQTVRLSWGR 400
L G + +T+++S+ R
Sbjct: 64 LNGLRLQSKTIKVSYAR 80
>pdb|2DIV|A Chain A, Solution Structure Of The Rrm Domain Of Trna
Selenocysteine Associated Protein
Length = 99
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 70
Query: 176 SYSGSLMPNTD--QPFRLNWATFSG 198
+G +P + F+LN+AT+SG
Sbjct: 71 KINGKPLPGATPAKRFKLNYATYSG 95
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 70
Query: 270 EMNG 273
++NG
Sbjct: 71 KING 74
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + + F G++ + K++R+K TGQS GYGFV + AEK + + +G
Sbjct: 14 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG------- 66
Query: 187 QPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID 244
RL T S R + S D +++V L +T L++ F S+Y + +++++D
Sbjct: 67 --LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVD 123
Query: 245 SNTGRTKGYGFVRFGDENERSRAMTEMNG 273
TG ++G GF+RF E A+ +NG
Sbjct: 124 QVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 42/170 (24%)
Query: 226 QETFSSKYPSV---KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
QE F S + S+ + K++ D TG++ GYGFV + D + +A+ +NG+ ++ ++
Sbjct: 16 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75
Query: 283 IDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDE 342
+ A P AS +A ++V L ++ +
Sbjct: 76 VSYARPSSAS--------------------------------IRDANLYVSGLPKTMTQK 103
Query: 343 DLREPFSQFGEILSVKIP------VGKGCGFVQFANSRKDAEVALQKLQG 386
+L + FSQ+G I++ +I V +G GF++F + R +AE A++ L G
Sbjct: 104 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF-DKRIEAEEAIKGLNG 152
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186
M + L+ F G + +++R+ +TG S GY FV+F S +++ ++ +G + N
Sbjct: 15 MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-- 72
Query: 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246
+ ++++A G E+ D +++V +L +TD L F KY S+ ++ D
Sbjct: 73 KRLKVSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKL 126
Query: 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVA 286
TGR +G FVR+ E A++ +N V S+P+ + +A
Sbjct: 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 40/185 (21%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
S+ ++ V L D+TD L F + P + +++ D TG + GY FV F E +
Sbjct: 1 ASNTNLIVNYLPQDMTDRELYALFRAIGP-INTCRIMRDYKTGYSYGYAFVDFTSEMDSQ 59
Query: 266 RAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGES 325
RA+ +NG+ ++ +++ A P G +S ++
Sbjct: 60 RAIKVLNGITVRNKRLKVSYARP-----------------------------GGESIKDT 90
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEV 379
N ++V L ++D+ L F ++G I+ I K G FV++ N R++A+
Sbjct: 91 N---LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY-NKREEAQE 146
Query: 380 ALQKL 384
A+ L
Sbjct: 147 AISAL 151
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L + + L F G +V ++R+K TG+ G FV + R A++ + +
Sbjct: 92 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151
Query: 178 SGSLMPNTDQPFRLNWA 194
+ + QP + A
Sbjct: 152 NNVIPEGGSQPLSVRLA 168
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191
L+ F G + ++ R+ +TG S GY FV+F S +++ ++ +G + N + ++
Sbjct: 31 LYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVLNGITVRN--KRLKV 88
Query: 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 251
++A G E+ D +++V +L +TD L F KY S+ ++ D TGR +
Sbjct: 89 SYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPR 142
Query: 252 GYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVA 286
G FVR+ E A++ +N V S+P+ + +A
Sbjct: 143 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 179
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 40/185 (21%)
Query: 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265
S+ ++ V L D TD L F + P + ++ D TG + GY FV F E +
Sbjct: 12 ASNTNLIVNYLPQDXTDRELYALFRAIGP-INTCRIXRDYKTGYSFGYAFVDFTSEXDSQ 70
Query: 266 RAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGES 325
RA+ +NG+ ++ +++ A P G +S ++
Sbjct: 71 RAIKVLNGITVRNKRLKVSYARP-----------------------------GGESIKDT 101
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEV 379
N ++V L ++D+ L F ++G I+ I K G FV++ N R++A+
Sbjct: 102 N---LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY-NKREEAQE 157
Query: 380 ALQKL 384
A+ L
Sbjct: 158 AISAL 162
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L + + L F G +V ++R+K TG+ G FV + R A++ + +
Sbjct: 103 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 162
Query: 178 SGSLMPNTDQPFRLNWATFSG 198
+ + QP + A G
Sbjct: 163 NNVIPEGGSQPLSVRLAEEHG 183
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D + + L M + + F G + + K++R+K TGQS GYGFV + A+K
Sbjct: 2 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 61
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACS--DLSIFVGDLAPDVTDSILQETFS 230
+ + +G +L T S R + S D +++V L ++ +++ F
Sbjct: 62 AINTLNG---------LKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF- 111
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
S+Y + +++++D TG ++G GF+RF E A+ +NG
Sbjct: 112 SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 154
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 42/170 (24%)
Query: 226 QETFSSKYPSV---KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282
Q+ F S + S+ + K++ D TG++ GYGFV + D N+ +A+ +NG+ ++ ++
Sbjct: 18 QDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK 77
Query: 283 IDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDE 342
+ A P AS +A ++V L +S +
Sbjct: 78 VSYARPSSAS--------------------------------IRDANLYVSGLPKTMSQK 105
Query: 343 DLREPFSQFGEILSVKIP------VGKGCGFVQFANSRKDAEVALQKLQG 386
++ + FSQ+G I++ +I V +G GF++F + R +AE A++ L G
Sbjct: 106 EMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF-DKRIEAEEAIKGLNG 154
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IF+G+L P++ + +L +TFS+ ++ K++ D +TG +KGY F+ F + A+
Sbjct: 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67
Query: 271 MNGVYCSSRPMRIDVATPKKASG 293
MNG Y +RP+ + A K + G
Sbjct: 68 MNGQYLCNRPITVSYAFKKDSKG 90
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
I+IG+L +DE L++ FS G ++ K++R+ TG S+GY F+ F S A++ +++
Sbjct: 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67
Query: 177 YSGSLMPNTDQPFRLNWA 194
+G + N +P +++A
Sbjct: 68 MNGQYLCN--RPITVSYA 83
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANSRK 375
G S ++ IF+G LD ++ ++ L + FS FG IL + KG F+ FA S
Sbjct: 1 GSSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFD 59
Query: 376 DAEVALQKLQGTAIGKQTVRLSW 398
++ A++ + G + + + +S+
Sbjct: 60 ASDAAIEAMNGQYLCNRPITVSY 82
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E+ ++IG L E L F G V ++K++++ TG+S G+GF+ F ++ ++V
Sbjct: 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV 61
Query: 174 LQS---YSGSLM-PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
+++ G ++ P P R E IFVG + PDV +E F
Sbjct: 62 VKTQHILDGKVIDPKRAIP-------------RDEQDKTGKIFVGGIGPDVRPKEFEEFF 108
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
S++ ++ A++++D +TG+++G+GFV + + R + + + R + I A P+
Sbjct: 109 -SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR-VCQNKFIDFKDRKIEIKRAEPR 166
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 44/176 (25%)
Query: 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
E+C +F+G L D T+ L+E F KY +V K++ D TGR++G+GF+ F E
Sbjct: 2 ESCK---MFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSF----E 53
Query: 264 RSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDG 323
+ ++ E V + + V PK+A D
Sbjct: 54 KPSSVDE---VVKTQHILDGKVIDPKRAI---------------------------PRDE 83
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANS 373
+ IFVG + DV ++ E FSQ+G I+ ++ + K G GFV + ++
Sbjct: 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
D+T I++G + + FS G +++ +++ +K TGQS G+GFV + S A +
Sbjct: 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143
Query: 172 KVLQS 176
+V Q+
Sbjct: 144 RVCQN 148
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI---PV---GKGCGFVQFANSRKDAE 378
+ +F+G L+ D ++++LRE F ++G + +KI P +G GF+ F E
Sbjct: 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 60
Query: 379 VA 380
V
Sbjct: 61 VV 62
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 199 SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
S ++ + + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F
Sbjct: 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSF 64
Query: 259 GDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
++ + A+ +M G + R +R + AT K
Sbjct: 65 FNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP------VGKGCGFVQFANS 373
Q SN+ +FVG L +++ ED++ F+ FG I ++ KG GFV F N
Sbjct: 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN- 66
Query: 374 RKDAEVALQKLQGTAIGKQTVRLSWG-RNP 402
+ DAE A+Q++ G +G + +R +W R P
Sbjct: 67 KWDAENAIQQMGGQWLGGRQIRTNWATRKP 96
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77
Query: 178 SGSLMPNTDQPFRLNWAT 195
G + + R NWAT
Sbjct: 78 GGQWLGG--RQIRTNWAT 93
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 199 SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
S ++ + + +FVGDL+P++T ++ F+ + + A+V+ D TG++KGYGFV F
Sbjct: 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSF 64
Query: 259 GDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
++ + A+ M G + R +R + AT K
Sbjct: 65 YNKLDAENAIVHMGGQWLGGRQIRTNWATRK 95
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 178 SGSLMPNTDQPFRLNWAT 195
G + + R NWAT
Sbjct: 78 GGQWLGG--RQIRTNWAT 93
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP------VGKGCGFVQFANS 373
Q SN+ +FVG L +++ ED++ F+ FG+I ++ KG GFV F N
Sbjct: 8 QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN- 66
Query: 374 RKDAEVALQKLQGTAIGKQTVRLSWG-RNP 402
+ DAE A+ + G +G + +R +W R P
Sbjct: 67 KLDAENAIVHMGGQWLGGRQIRTNWATRKP 96
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
++FVGDL +V D L+ F +PS V+ D TG ++GYGFV F +++ AM
Sbjct: 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 60
Query: 269 TEMNGVYCSSRPMRIDVA 286
M G + RP+RI+ A
Sbjct: 61 DSMQGQDLNGRPLRINWA 78
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T +++GDL +D+ L N F ++ V+ + QTG S GYGFV F S+ A+ +
Sbjct: 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 60
Query: 175 QSYSGSLMPNTDQPFRLNWA 194
S G + +P R+NWA
Sbjct: 61 DSMQGQDL--NGRPLRINWA 78
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILS------VKIPVGKGCGFVQFANSRKDAEVALQK 383
+FVG L+ +V DE LR F F LS ++ +G GFV F S+ DA+ A+
Sbjct: 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT-SQDDAQNAMDS 62
Query: 384 LQGTAIGKQTVRLSWG 399
+QG + + +R++W
Sbjct: 63 MQGQDLNGRPLRINWA 78
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + TD L+ F ++ ++ V+ D NT R++G+GFV + E AM
Sbjct: 9 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 65
Query: 271 MNGVYCSSRPMRID--VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA 328
++RP ++D V PK+A PG++
Sbjct: 66 ------NARPHKVDGRVVEPKRAVSREDSQR---------PGAH------------LTVK 98
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG------FVQFANSRKDAEVALQ 382
IFVG + D + LR+ F Q+G+I ++I +G G FV F + ++ +Q
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 158
Query: 383 K 383
K
Sbjct: 159 K 159
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 113 DETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L F DE+ L + F G + + V+R+ T +S G+GFV + + +
Sbjct: 4 EQLRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ + + +P R + S R + IFVG + D + L++ F
Sbjct: 63 AAMNARPHKVDGRVVEPKRA--VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-E 119
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE----MNGVYCSSR 279
+Y ++ +++ D +G+ +G+ FV F D + + + + +NG C R
Sbjct: 120 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 171
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + TD L+ F ++ ++ V+ D NT R++G+GFV + E AM
Sbjct: 16 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 72
Query: 271 MNGVYCSSRPMRID--VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA 328
++RP ++D V PK+A PG++
Sbjct: 73 ------NARPHKVDGRVVEPKRAVSREDSQR---------PGAH------------LTVK 105
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG------FVQFANSRKDAEVALQ 382
IFVG + D + LR+ F Q+G+I ++I +G G FV F + ++ +Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 383 K 383
K
Sbjct: 166 K 166
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 113 DETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L F DE+ L + F G + + V+R+ T +S G+GFV + + +
Sbjct: 11 EQLRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ + + +P R + S R + IFVG + D + L++ F
Sbjct: 70 AAMNARPHKVDGRVVEPKRA--VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-E 126
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE----MNGVYCSSR 279
+Y ++ +++ D +G+ +G+ FV F D + + + + +NG C R
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + TD L+ F ++ ++ V+ D NT R++G+GFV + E AM
Sbjct: 15 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 71
Query: 271 MNGVYCSSRPMRID--VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA 328
++RP ++D V PK+A PG++
Sbjct: 72 ------NARPHKVDGRVVEPKRAVSREDSQR---------PGAH------------LTVK 104
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG------FVQFANSRKDAEVALQ 382
IFVG + D + LR+ F Q+G+I ++I +G G FV F + ++ +Q
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
Query: 383 K 383
K
Sbjct: 165 K 165
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 113 DETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L F DE+ L + F G + + V+R+ T +S G+GFV + + +
Sbjct: 10 EQLRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ + + +P R + S R + IFVG + D + L++ F
Sbjct: 69 AAMNARPHKVDGRVVEPKRA--VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-E 125
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE----MNGVYCSSR 279
+Y ++ +++ D +G+ +G+ FV F D + + + + +NG C R
Sbjct: 126 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 177
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + TD L+ F ++ ++ V+ D NT R++G+GFV + E AM
Sbjct: 14 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 70
Query: 271 MNGVYCSSRPMRID--VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA 328
++RP ++D V PK+A PG++
Sbjct: 71 ------NARPHKVDGRVVEPKRAVSREDSQR---------PGAH------------LTVK 103
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG------FVQFANSRKDAEVALQ 382
IFVG + D + LR+ F Q+G+I ++I +G G FV F + ++ +Q
Sbjct: 104 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 163
Query: 383 K 383
K
Sbjct: 164 K 164
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 113 DETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L F DE+ L + F G + + V+R+ T +S G+GFV + + +
Sbjct: 9 EQLRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 67
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ + + +P R + S R + IFVG + D + L++ F
Sbjct: 68 AAMNARPHKVDGRVVEPKRA--VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-E 124
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE----MNGVYCSSR 279
+Y ++ +++ D +G+ +G+ FV F D + + + + +NG C R
Sbjct: 125 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 176
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + TD L+ F ++ ++ V+ D NT R++G+GFV + E AM
Sbjct: 17 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 73
Query: 271 MNGVYCSSRPMRID--VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA 328
++RP ++D V PK+A PG++
Sbjct: 74 ------NARPHKVDGRVVEPKRAVSREDSQR---------PGAH------------LTVK 106
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG------FVQFANSRKDAEVALQ 382
IFVG + D + LR+ F Q+G+I ++I +G G FV F + ++ +Q
Sbjct: 107 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 166
Query: 383 K 383
K
Sbjct: 167 K 167
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 113 DETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L F DE+ L + F G + + V+R+ T +S G+GFV + + +
Sbjct: 12 EQLRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 70
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ + + +P R + S R + IFVG + D + L++ F
Sbjct: 71 AAMNARPHKVDGRVVEPKRA--VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-E 127
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE----MNGVYCSSR 279
+Y ++ +++ D +G+ +G+ FV F D + + + + +NG C R
Sbjct: 128 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 179
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 38/181 (20%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + TD L+ F ++ ++ V+ D NT R++G+GFV + E AM
Sbjct: 16 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-- 72
Query: 271 MNGVYCSSRPMRID--VATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA 328
++RP ++D V PK+A PG++
Sbjct: 73 ------NARPHKVDGRVVEPKRAVSREDSQR---------PGAH------------LTVK 105
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG------FVQFANSRKDAEVALQ 382
IFVG + D + LR+ F Q+G+I ++I +G G FV F + ++ +Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 383 K 383
K
Sbjct: 166 K 166
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 9/172 (5%)
Query: 113 DETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L F DE+ L + F G + + V+R+ T +S G+GFV + + +
Sbjct: 11 EQLRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
+ + + +P R + S R + IFVG + D + L++ F
Sbjct: 70 AAMNARPHKVDGRVVEPKRA--VSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-E 126
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE----MNGVYCSSR 279
+Y ++ +++ D +G+ +G+ FV F D + + + + +NG C R
Sbjct: 127 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
+ ++VG L ++T+ +L+ F + ++ ++++DS TGR+KGYGF+ F D +A+
Sbjct: 27 MRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 85
Query: 269 TEMNGVYCSSRPMRIDVATPK 289
++NG + RPM++ T +
Sbjct: 86 EQLNGFELAGRPMKVGHVTER 106
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G L + E L F G++ +++++ + +TG+S+GYGF+ F A+K L+
Sbjct: 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88
Query: 178 SG 179
+G
Sbjct: 89 NG 90
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKD 376
G + ++VG+L +++++ LR F FG I S+++ + KG GF+ F++S +
Sbjct: 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS-EC 80
Query: 377 AEVALQKLQGTAIGKQTVRL 396
A+ AL++L G + + +++
Sbjct: 81 AKKALEQLNGFELAGRPMKV 100
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 5/174 (2%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G +++ + E + F+ G + ++ + + T + +G+ FVE+ AA+ L+
Sbjct: 31 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90
Query: 178 SGSLM----PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+ ++ +P + A EA + I+V + D++D ++ F + +
Sbjct: 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-F 149
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287
+K A + D TG+ KGYGF+ + A++ MN + +R+ A
Sbjct: 150 GKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 38/213 (17%)
Query: 201 RRTEACSDLS-IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259
+R A + +S ++VG + ++ + +++ F+ P +K + DS T + KG+ FV +
Sbjct: 20 QRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTMKHKGFAFVEYE 78
Query: 260 DENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGS 319
A+ +MN V R +++ G P + G
Sbjct: 79 VPEAAQLALEQMNSVMLGGRNIKV-----------------------GRPSNIGQAQPII 115
Query: 320 QSDGESNNA--TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQF- 370
E A I+V ++ D+SD+D++ F FG+I S + KG GF+++
Sbjct: 116 DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYE 175
Query: 371 -ANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402
A S +DA ++ +G Q +R+ P
Sbjct: 176 KAQSSQDAVSSMNLFD---LGGQYLRVGKAVTP 205
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 310 GSNGARVQGSQSDGESNNAT----------IFVGALDSDVSDEDLREPFSQFGEILSVKI 359
GS+ A + G Q G + A ++VG++ ++ ++ +R+ F+ FG I S+ +
Sbjct: 1 GSHMASMTGGQQMGRGSAAQRQGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDM 60
Query: 360 P------VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
KG FV++ + A++AL+++ +G + +++ N G Q
Sbjct: 61 SWDSVTMKHKGFAFVEY-EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQ 112
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+FVG++ + T+ L++ FS P V +++ D TG+ KGYGF + D+ AM
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
Query: 270 EMNGVYCSSRPMRIDVATPKK 290
+NG S R +R+D A +K
Sbjct: 69 NLNGREFSGRALRVDNAASEK 89
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+++++G++ + E L + FS G VV+ +++ +++TG+ +GYGF E+ + A ++
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
Query: 176 SYSG 179
+ +G
Sbjct: 69 NLNG 72
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQ 382
++FVG + + ++E L++ FS+ G ++S ++ KG GF ++ + ++ A A++
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMR 68
Query: 383 KLQGTAIGKQTVRLSWGRNPGNKQ 406
L G + +R+ + NK+
Sbjct: 69 NLNGREFSGRALRVDNAASEKNKE 92
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG L ++T+ +L+ F + + ++ DS+TGR+KGYGF+ F D RA+ +
Sbjct: 8 LYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66
Query: 271 MNGVYCSSRPMRIDVATPKKASG 293
+NG + RPMR+ T + G
Sbjct: 67 LNGFELAGRPMRVGHVTERLDGG 89
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G L + E L F G++ N+ ++++ TG+S+GYGF+ F A + L+
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 178 SG 179
+G
Sbjct: 68 NG 69
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKD 376
G S ++ ++VG+L +++++ LR F FG+I ++ + KG GF+ F++S +
Sbjct: 1 GSSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS-EC 59
Query: 377 AEVALQKLQG-------TAIGKQTVRLSWGRNPGN 404
A AL++L G +G T RL G P +
Sbjct: 60 ARRALEQLNGFELAGRPMRVGHVTERLDGGSGPSS 94
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 319 SQSDGESNN-ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDA 377
S S GE T++VG L +++ DLR F QFGEI ++ + + C F+QFA +R+ A
Sbjct: 3 SGSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA-TRQAA 61
Query: 378 EVALQK-LQGTAIGKQTVRLSWGR 400
EVA +K + + + + WGR
Sbjct: 62 EVAAEKSFNKLIVNGRRLNVKWGR 85
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 105 GSNNNFTNDET-KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
GS+ + D+T T+++G L + ET L N F G++ + V++ +Q F++
Sbjct: 1 GSSGSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQC------AFIQ 54
Query: 164 FYSRAAAEKVLQSYSGSLMPN 184
F +R AAE + L+ N
Sbjct: 55 FATRQAAEVAAEKSFNKLIVN 75
>pdb|1X4G|A Chain A, Solution Structure Of Rrm Domain In Nucleolysin Tiar
Length = 109
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQG 386
N T++ G + S ++D+ +R+ FS FG+I+ +++ KG FV+F+ + + A A+ + G
Sbjct: 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFS-THESAAHAIVSVNG 83
Query: 387 TAIGKQTVRLSWGR 400
T I V+ WG+
Sbjct: 84 TTIEGHVVKCYWGK 97
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
+ +++ G +A +TD ++++TFS + + +V + KGY FVRF + A
Sbjct: 25 NCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHA 77
Query: 268 MTEMNG 273
+ +NG
Sbjct: 78 IVSVNG 83
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264
A + +FVG L+ D + L++ FS KY + V+ D T R++G+GFV F + ++
Sbjct: 9 ASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 67
Query: 265 SRAMTEMNGVYCSSRPMRIDVA 286
AM MNG R +R+D A
Sbjct: 68 KDAMMAMNGKSVDGRQIRVDQA 89
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
+DE K +++G L +E L FS GQ+ V V+++++T +S G+GFV F +
Sbjct: 8 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 66
Query: 170 AEKVLQSYSG 179
A+ + + +G
Sbjct: 67 AKDAMMAMNG 76
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAE 378
S+ +FVG L D +++ L + FS++G+I V + +G GFV F N DA+
Sbjct: 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI-DDAK 68
Query: 379 VALQKLQGTAIGKQTVRLSW-GRNPGNK 405
A+ + G ++ + +R+ G++ N+
Sbjct: 69 DAMMAMNGKSVDGRQIRVDQAGKSSDNR 96
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G+L + E F G+ V + R++ G+GF+ SR AE
Sbjct: 25 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR------GFGFIRLESRTLAEIAKAEL 78
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237
G+++ + +P R+ +AT + + V +L+P V++ +L++ F S++ V+
Sbjct: 79 DGTILKS--RPLRIRFATHGAA-----------LTVKNLSPVVSNELLEQAF-SQFGPVE 124
Query: 238 GAKVIIDSNTGRTKGYGFVRFG 259
A V++D + GR G GFV F
Sbjct: 125 KAVVVVD-DRGRATGKGFVEFA 145
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 60/204 (29%)
Query: 189 FRLNWATF--SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIID 244
F ++ +F G T+ C +FVG+L D+T+ + F +Y PS +V I+
Sbjct: 4 FTIDIKSFLKPGEKTYTQRCR---LFVGNLPTDITEEDFKRLFE-RYGEPS----EVFIN 55
Query: 245 SNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALV 304
R +G+GF+R A E++G SRP+RI AT
Sbjct: 56 ----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT----------------- 94
Query: 305 LAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--- 361
+ A + V L VS+E L + FSQFG + + V
Sbjct: 95 ---------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR 133
Query: 362 --GKGCGFVQFANSRKDAEVALQK 383
G GFV+FA ++ A AL++
Sbjct: 134 GRATGKGFVEFA-AKPPARKALER 156
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384
+ +FVG L +D+++ED + F ++GE V I +G GF++ SR AE+A +L
Sbjct: 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRL-ESRTLAEIAKAEL 78
Query: 385 QGTAIGKQTVRLSWG 399
GT + + +R+ +
Sbjct: 79 DGTILKSRPLRIRFA 93
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
++++V +L + D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+
Sbjct: 16 VNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 72
Query: 269 TEMNGVYCSSRPMRIDVATPKK 290
TEMNG +++P+ + +A K+
Sbjct: 73 TEMNGRIVATKPLYVALAQRKE 94
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 307 GGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----G 362
G GS+G R+ Q ++V LD + DE LR+ FS FG I S K+ +
Sbjct: 1 GSSGSSGDRITRYQV------VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS 54
Query: 363 KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
KG GFV F+ S ++A A+ ++ G + + + ++ + +Q
Sbjct: 55 KGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
S + T + +++ +L +D+ L FS G + + KV+ + G+S+G+GFV F
Sbjct: 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFS 63
Query: 166 SRAAAEKVLQSYSGSLM 182
S A K + +G ++
Sbjct: 64 SPEEATKAVTEMNGRIV 80
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G +++ + E + F+ G + ++ + + T + +G+ FVE+ AA+ L+
Sbjct: 16 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 75
Query: 178 SGSLM----PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+ ++ +P + A EA + I+V + D++D ++ F + +
Sbjct: 76 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-F 134
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
+K + D TG+ KGYGF+ + A++ MN
Sbjct: 135 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 173
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 37/202 (18%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG + ++ + +++ F+ P +K + DS T + KG+ FV + A+ +
Sbjct: 16 VYVGSIYYELGEDTIRQAFAPFGP-IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 271 MNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNA-- 328
MN V R +++ G P + G E A
Sbjct: 75 MNSVMLGGRNIKV-----------------------GRPSNIGQAQPIIDQLAEEARAFN 111
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQF--ANSRKDAEVA 380
I+V ++ D+SD+D++ F FG+I S + KG GF+++ A S +DA +
Sbjct: 112 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 171
Query: 381 LQKLQGTAIGKQTVRLSWGRNP 402
+ +G Q +R+ P
Sbjct: 172 MNLFD---LGGQYLRVGKAVTP 190
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIP------VGKGCGFVQFANSRKDAEVALQK 383
++VG++ ++ ++ +R+ F+ FG I S+ + KG FV++ + A++AL++
Sbjct: 16 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY-EVPEAAQLALEQ 74
Query: 384 LQGTAIGKQTVRLSWGRNPGNKQ 406
+ +G + +++ N G Q
Sbjct: 75 MNSVMLGGRNIKVGRPSNIGQAQ 97
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
S +FVGDL+P++T + + + + + A+V+ D TG++KGYGFV F ++ +
Sbjct: 5 SHFHVFVGDLSPEITTAAIAAA-FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 63
Query: 267 AMTEMNGVYCSSRPMRIDVATPK 289
A+ +M G + R +R + AT K
Sbjct: 64 AIQQMGGQWLGGRQIRTNWATRK 86
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 140 GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195
G++ + +V+++ TG+S+GYGFV F+++ AE +Q G + + R NWAT
Sbjct: 31 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWAT 84
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVALQK 383
+FVG L +++ + F+ FG I ++ KG GFV F N + DAE A+Q+
Sbjct: 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN-KWDAENAIQQ 67
Query: 384 LQGTAIGKQTVRLSWG-RNP 402
+ G +G + +R +W R P
Sbjct: 68 MGGQWLGGRQIRTNWATRKP 87
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQ 175
+++G + E L F G V + V+R++ QS+G FV FY+R AA +
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 176 S-YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ ++ ++P P ++ A + A D +F+G ++ T++ ++ FSS +
Sbjct: 78 ALHNMKVLPGMHHPIQMKPA----DSEKNNAVEDRKLFIGMISKKCTENDIRVMFSS-FG 132
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-------CSSRPMRIDVA 286
++ + I+ G ++G FV F R+ A T + ++ CSS PM + A
Sbjct: 133 QIEECR-ILRGPDGLSRGCAFVTF---TTRAMAQTAIKAMHQAQTMEGCSS-PMVVKFA 186
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 316 VQGSQSDGESNNAT----IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCG 366
+Q +D E NNA +F+G + ++ D+R FS FG+I +I G +GC
Sbjct: 92 IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCA 151
Query: 367 FVQFANSRKDAEVALQKLQ 385
FV F +R A+ A++ +
Sbjct: 152 FVTF-TTRAMAQTAIKAMH 169
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKI--------PVGKGCGFVQFANSRKDAEVAL 381
+FVG + S++DLRE F Q+G + + + P KGC FV F +RK A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY-TRKAALEAQ 76
Query: 382 QKLQGTAI 389
L +
Sbjct: 77 NALHNMKV 84
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G + MDET + + F+ G V VK+I ++ TG S+GYGFV FY+ +K+++S
Sbjct: 12 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVES 70
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIP-----VGKGCGFVQFANSRKDAEVALQK 383
T+FVG +D + + ++R F+++G + VKI V KG GFV F N +V +QK
Sbjct: 12 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN-----DVDVQK 66
Query: 384 LQGTAIGKQTVRLSWG 399
+ + I +L G
Sbjct: 67 IVESQINFHGKKLKLG 82
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
++FVG + + ++ ++ +F ++Y SVK K+I D TG +KGYGFV F
Sbjct: 12 TVFVGGIDVRMDETEIR-SFFARYGSVKEVKIITD-RTGVSKGYGFVSF 58
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQ 175
+++G + E L F G V + V+R++ QS+G FV FY+R AA +
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 65
Query: 176 S-YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ ++ ++P P ++ A + A D +F+G ++ T++ ++ FSS +
Sbjct: 66 ALHNMKVLPGMHHPIQMKPA----DSEKNNAVEDRKLFIGMISKKCTENDIRVMFSS-FG 120
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-------CSSRPMRIDVA 286
++ + I+ G ++G FV F R+ A T + ++ CSS PM + A
Sbjct: 121 QIEECR-ILRGPDGLSRGCAFVTF---TTRAMAQTAIKAMHQAQTMEGCSS-PMVVKFA 174
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 316 VQGSQSDGESNNAT----IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCG 366
+Q +D E NNA +F+G + ++ D+R FS FG+I +I G +GC
Sbjct: 80 IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCA 139
Query: 367 FVQFANSRKDAEVALQKLQ 385
FV F +R A+ A++ +
Sbjct: 140 FVTF-TTRAMAQTAIKAMH 157
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI--------PVGKGCGFVQFANSRKD 376
S+ +FVG + S++DLRE F Q+G + + + P KGC FV F +RK
Sbjct: 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF-YTRKA 59
Query: 377 AEVALQKLQGTAI 389
A A L +
Sbjct: 60 ALEAQNALHNMKV 72
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+ ++
Sbjct: 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76
Query: 177 YSGSLMPNTDQPFRLNWAT 195
++ +P R+N A+
Sbjct: 77 M--DMIKLYGKPIRVNKAS 93
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+E D +++VG L V++ +L E F P V + D TG+ +GYGFV F E
Sbjct: 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEFLSEE 68
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVAT 287
+ A+ M+ + +P+R++ A+
Sbjct: 69 DADYAIKIMDMIKLYGKPIRVNKAS 93
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEVA 380
+AT++VG LD VS+ L E F Q G +++ +P + G GFV+F S +DA+ A
Sbjct: 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL-SEEDADYA 73
Query: 381 LQKLQGTAIGKQTVRLS 397
++ + + + +R++
Sbjct: 74 IKIMDMIKLYGKPIRVN 90
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G + MDET + + F+ G V VK+I ++ TG S+GYGFV FY+ +K+++S
Sbjct: 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVES 69
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 319 SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI-----PVGKGCGFVQFANS 373
S +G+ T+FVG +D + + ++R F+++G + VKI V KG GFV F N
Sbjct: 1 SLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN- 59
Query: 374 RKDAEVALQKLQGTAIGKQTVRLSWG 399
+V +QK+ + I +L G
Sbjct: 60 ----DVDVQKIVESQINFHGKKLKLG 81
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
++FVG + + ++ ++ +F ++Y SVK K+I D TG +KGYGFV F
Sbjct: 11 TVFVGGIDVRMDETEIR-SFFARYGSVKEVKIITD-RTGVSKGYGFVSF 57
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G + MDET + + F+ G V VK+I ++ TG S+GYGFV FY+ +K+++S
Sbjct: 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVES 69
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 319 SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI-----PVGKGCGFVQFANS 373
S +G+ T+FVG +D + + ++R F+++G + VKI V KG GFV F N
Sbjct: 1 SLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN- 59
Query: 374 RKDAEVALQKLQGTAIGKQTVRLSWG 399
+V +QK+ + I +L G
Sbjct: 60 ----DVDVQKIVESQINFHGKKLKLG 81
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
++FVG + + ++ ++ +F ++Y SVK K+I D TG +KGYGFV F
Sbjct: 11 TVFVGGIDVRMDETEIR-SFFARYGSVKEVKIITD-RTGVSKGYGFVSF 57
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G +++ + E + F+ G + ++ + T + +G+ FVE+ AA+ L+
Sbjct: 15 VYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQX 74
Query: 178 SGSLM----PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+ + +P + A EA + I+V + D++D ++ F + +
Sbjct: 75 NSVXLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-F 133
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
+K + D TG+ KGYGF+ + A++ N
Sbjct: 134 GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSXN 172
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 35/191 (18%)
Query: 198 GSDRRTEACS-DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
G+ +R A + ++VG + ++ + +++ F+ P +K DS T + KG+ FV
Sbjct: 1 GAAQRQRALAIXCRVYVGSIYYELGEDTIRQAFAPFGP-IKSIDXSWDSVTXKHKGFAFV 59
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARV 316
+ A+ + N V R +++ G P + G
Sbjct: 60 EYEVPEAAQLALEQXNSVXLGGRNIKV-----------------------GRPSNIGQAQ 96
Query: 317 QGSQSDGESNNA--TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFV 368
E A I+V ++ D+SD+D++ F FG+I S + KG GF+
Sbjct: 97 PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFI 156
Query: 369 QF--ANSRKDA 377
++ A S +DA
Sbjct: 157 EYEKAQSSQDA 167
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVK------IPVGKGCGFVQFANSRKDAEVALQK 383
++VG++ ++ ++ +R+ F+ FG I S+ KG FV++ + A++AL++
Sbjct: 15 VYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEY-EVPEAAQLALEQ 73
Query: 384 LQGTAIGKQTVRLSWGRNPGNKQ 406
+G + +++ N G Q
Sbjct: 74 XNSVXLGGRNIKVGRPSNIGQAQ 96
>pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 12/160 (7%)
Query: 119 WIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQS 176
++G + E L F G V + V+R++ QS+G FV FY+R AA + +
Sbjct: 7 FVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA 66
Query: 177 -YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
++ ++P P + A + A D +F+G ++ T++ ++ FSS +
Sbjct: 67 LHNXKVLPGXHHPIQXKPA----DSEKNNAVEDRKLFIGXISKKCTENDIRVXFSS-FGQ 121
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
++ + I+ G ++G FV F R+ A T + +
Sbjct: 122 IEECR-ILRGPDGLSRGCAFVTF---TTRAXAQTAIKAXH 157
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 316 VQGSQSDGESNNAT----IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCG 366
+Q +D E NNA +F+G + ++ D+R FS FG+I +I G +GC
Sbjct: 80 IQXKPADSEKNNAVEDRKLFIGXISKKCTENDIRVXFSSFGQIEECRILRGPDGLSRGCA 139
Query: 367 FVQFANSRKDAEVALQ 382
FV F +R A+ A++
Sbjct: 140 FVTF-TTRAXAQTAIK 154
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI--------PVGKGCGFVQFANSRKD 376
S+ FVG + S++DLRE F Q+G + + + P KGC FV F +RK
Sbjct: 1 SDAIKXFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF-YTRKA 59
Query: 377 AEVALQKLQGTAI 389
A A L +
Sbjct: 60 ALEAQNALHNXKV 72
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 223 SILQETFSSKYPSV---KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
++ Q+ F S + S+ + K++ D TG++ GYGFV + D N+ +A+ +NG+ ++
Sbjct: 15 NMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTK 74
Query: 280 PMRIDVATPKKAS 292
+++ A P AS
Sbjct: 75 TIKVSYARPSSAS 87
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179
M + + F G + + K++R+K TGQS GYGFV + A+K + + +G
Sbjct: 16 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 68
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++FV L+ D T+ L+E+F SV+ A+++ D TG +KG+GFV F E + A
Sbjct: 17 TLFVKGLSEDTTEETLKESFDG---SVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 72
Query: 270 EMNGVYCSSRPMRIDVATPK 289
M + +D A PK
Sbjct: 73 AMEDGEIDGNKVTLDWAKPK 92
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 307 GGPGSNG--ARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF--SQFGEILSVK-IPV 361
G GS+G AR Q S+ T+FV L D ++E L+E F S I++ +
Sbjct: 1 GSSGSSGPNARSQPSK--------TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGS 52
Query: 362 GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
KG GFV F NS +DA+ A + ++ I V L W +
Sbjct: 53 SKGFGFVDF-NSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
+KT+++ L E L F + V +++ +++TG S+G+GFV+F S A+
Sbjct: 15 SKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 71
Query: 175 QSYS-GSLMPNTDQPFRLNWA 194
++ G + N L+WA
Sbjct: 72 EAMEDGEIDGN---KVTLDWA 89
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G+L + E ++ FS +G + + + +K + G+ FVE+YSRA AE ++
Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
Query: 177 YSGSLMPNTDQPFRLNW 193
+G+ + D+ R +W
Sbjct: 101 INGTRLD--DRIIRTDW 115
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK----GCGF--VQFANSRKDAEV 379
+ T++VG L ++E + E FS+ G+I + + + K CGF V++ SR DAE
Sbjct: 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY-SRADAEN 96
Query: 380 ALQKLQGTAIGKQTVRLSW--GRNPGNKQWRG 409
A++ + GT + + +R W G G + RG
Sbjct: 97 AMRYINGTRLDDRIIRTDWDAGFKEGRQYGRG 128
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 341 DEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396
D DLR+ F QFG+IL V+I KG GFV F NS DA+ A +KL GT + + + +
Sbjct: 29 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS-ADADRAREKLHGTVVEGRKIEV 87
Query: 397 S 397
+
Sbjct: 88 N 88
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182
L F G++++V++I N++ S+G+GFV F + A A++ + G+++
Sbjct: 32 LRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVV 80
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+KG+GFV F + + RA +++G R + ++ AT +
Sbjct: 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I+VG+L T ++E FS ++ V K+I D T + KG+GFV +E+ S A+
Sbjct: 3 NIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEESV-SEAIA 60
Query: 270 EMNGVYCSSRPMRIDVATPKKA 291
+++ R +R+ A PKK+
Sbjct: 61 KLDNTDFMGRTIRVTEANPKKS 82
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+ I++G+L + + FS G+V NVK+I +++T + +G+GFVE + +E + +
Sbjct: 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAK 61
Query: 176 SYSGSLMPNT 185
+ M T
Sbjct: 62 LDNTDFMGRT 71
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQK 383
I+VG L + E ++E FSQFG++ +VK+ KG GFV+ + A+ K
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEM--QEESVSEAIAK 61
Query: 384 LQGTAIGKQTVRLS 397
L T +T+R++
Sbjct: 62 LDNTDFMGRTIRVT 75
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
I++G L + + L F G + VI ++QTG+S GYGFV RAAAE+ +
Sbjct: 20 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 77
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IFVG L TD+ L++ F + ++ A VI D TG+++GYGFV D RA +
Sbjct: 20 IFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78
Query: 271 MNGV 274
N +
Sbjct: 79 PNPI 82
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVALQ 382
IFVG L +D LR+ F FG+I + +G GFV A+ R AE A +
Sbjct: 20 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD-RAAAERACK 77
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D + + + + +DE L F G + +VK++ +++T QS GYGFV+F S ++A++
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 173 VLQSYSG 179
+ +G
Sbjct: 100 AIAGLNG 106
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%)
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
P D + +Y ++ K++ D T +++GYGFV+F + +A+ +NG
Sbjct: 51 PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110
Query: 278 SRPMRIDVA 286
++ +++ +A
Sbjct: 111 NKRLKVALA 119
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVALQK 383
+ V + + V + LR+ F ++G I SVKI +G GFV+F S A+ A+
Sbjct: 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKF-QSGSSAQQAIAG 103
Query: 384 LQGTAIGKQTVRLSWG 399
L G I + ++++
Sbjct: 104 LNGFNILNKRLKVALA 119
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D+ TI + +L ET L F G + + + ++K TGQS+G+ F+ F+ R A +
Sbjct: 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 72
Query: 173 VLQSYSG 179
+ SG
Sbjct: 73 AIAGVSG 79
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG +RR A + +I V +L+ D ++ LQE F + S+ + D TG++KG+ F+
Sbjct: 6 SGPNRR--ADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFI 62
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
F + +RA+ ++G + ++ A P SG
Sbjct: 63 SFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSG 99
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEV 379
+NATI V L D + DL+E F FG I + + KG F+ F + R+DA
Sbjct: 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF-HRREDAAR 72
Query: 380 ALQKLQGTAIGKQTVRLSWGR 400
A+ + G + + W +
Sbjct: 73 AIAGVSGFGYDHLILNVEWAK 93
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
S+ ++ V L D+TD L F + P + +++ D TG + GY FV F E + R
Sbjct: 2 SNTNLIVNYLPQDMTDRELYALFRAIGP-INTCRIMRDYKTGYSYGYAFVDFTSEMDSQR 60
Query: 267 AMTEMNGVYCSSRPMRIDVATP 288
A+ +NG+ ++ +++ A P
Sbjct: 61 AIKVLNGITVRNKRLKVSYARP 82
Score = 35.0 bits (79), Expect = 0.088, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184
M + L+ F G + +++R+ +TG S GY FV+F S +++ ++ +G + N
Sbjct: 15 MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 201 RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260
++ E ++F+ L + TD+ L TF + +V AKV ID T +K +GFV F +
Sbjct: 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDN 91
Query: 261 ENERSRAMTEMNGVYCSSRPMRIDV 285
+ A+ MNG ++ +++ +
Sbjct: 92 PDSAQVAIKAMNGFQVGTKRLKVQL 116
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK-----GC-GFVQFA 371
G Q +G +F+ L + +D DL F FG ++S K+ + K C GFV F
Sbjct: 32 GKQIEGP-EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFD 90
Query: 372 NSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
N A+VA++ + G +G + +++ +
Sbjct: 91 NP-DSAQVAIKAMNGFQVGTKRLKVQLKK 118
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I L +T L + F G V++ KV +KQT S+ +GFV F + +A+ +++
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102
Query: 178 SG 179
+G
Sbjct: 103 NG 104
>pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre
Rna
pdb|1RKJ|A Chain A, Solution Structure Of The Complex Formed By The Two N-
Terminal Rna-Binding Domains Of Nucleolin And A Pre-Rrna
Target
Length = 175
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+E+ + ++F+G+L P+ + + L+ S + K ++D TG + +G+V F
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFA--KNDLAVVDVRTGTNRKFGYVDFESAE 65
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSD 322
+ +A+ E+ G+ ++++ PK G + +V+ ++
Sbjct: 66 DLEKAL-ELTGLKVFGNEIKLE--KPK--------------------GRDSKKVRAAR-- 100
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEI-LSVKIPVGKGCGFVQFANSRKDAEVAL 381
T+ L ++++++L+E F EI L + KG +++F S DAE L
Sbjct: 101 ------TLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEF-KSEADAEKNL 153
Query: 382 QKLQGTAIGKQTVRLSW 398
++ QG I ++V L +
Sbjct: 154 EEKQGAEIDGRSVSLYY 170
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Query: 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179
+ +L + E F N + VV+V+ TG + +G+V+F S EK L+
Sbjct: 27 VAELKVAISELFAKNDLA----VVDVR------TGTNRKFGYVDFESAEDLEKALELTGL 76
Query: 180 SLMPNTDQPFRLNWATFSGSD-RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238
+ N + G D ++ A ++ +L+ ++T+ L+E F
Sbjct: 77 KVFGN-----EIKLEKPKGRDSKKVRAAR--TLLAKNLSFNITEDELKEVFED------A 123
Query: 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
++ + S G++KG ++ F E + + + E G R + +
Sbjct: 124 LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 112 NDETKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY---SR 167
N ++ +++G + + +E L C S+ G V+N+K++ + QTG+S+GY F+EF S
Sbjct: 1 NPPSRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESS 59
Query: 168 AAAEKVLQSY 177
A+A + L Y
Sbjct: 60 ASAVRNLNGY 69
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+++G + D T+ + + S+ P V K++ D TGR+KGY F+ F D + A+
Sbjct: 7 VYLGSIPYDQTEEQILDLCSNVGP-VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 65
Query: 271 MNGVYCSSRPMR 282
+NG SR ++
Sbjct: 66 LNGYQLGSRFLK 77
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+IF+ +L + + L +TFS+ + ++ KV+ D N +KGYGFV F + RA+
Sbjct: 13 NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 69
Query: 270 EMNGVYCSSR 279
+MNG+ + R
Sbjct: 70 KMNGMLLNDR 79
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAEV 379
+S IF+ LD + ++ L + FS FG ILS K+ KG GFV F +++ AE
Sbjct: 8 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF-ETQEAAER 66
Query: 380 ALQKLQGTAIGKQTV 394
A++K+ G + + V
Sbjct: 67 AIEKMNGMLLNDRKV 81
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G++ + I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F
Sbjct: 1 GADPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHF 58
Query: 165 YSRAAAEKVLQSYSGSLM 182
++ AAE+ ++ +G L+
Sbjct: 59 ETQEAAERAIEKMNGMLL 76
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 341 DEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396
D DLR+ F QFG+IL V+I KG GFV F NS DA+ A +KL GT + + + +
Sbjct: 43 DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS-ADADRAREKLHGTVVEGRKIEV 101
Query: 397 S 397
+
Sbjct: 102 N 102
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 105 GSNNNFTN-DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
GS+ N N + K + + ++ + L F G++++V++I N++ S+G+GFV
Sbjct: 18 GSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVT 75
Query: 164 FYSRAAAEKVLQSYSGSLM 182
F + A A++ + G+++
Sbjct: 76 FENSADADRAREKLHGTVV 94
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 246 NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
N +KG+GFV F + + RA +++G R + ++ AT +
Sbjct: 64 NERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L MDE L N GQV++ +++R+ +G S G GF S E V+ +
Sbjct: 28 LYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHF 86
Query: 178 SGSLM---PNTDQPFRLNWATFSG 198
+G + P P FSG
Sbjct: 87 NGKFIKTPPGVSAPTEPLLCKFSG 110
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
DE +++G L + L + FS G+VV+ ++++K T QS G+GFV+F
Sbjct: 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 73
Query: 173 VLQSYSGSL 181
VL S +L
Sbjct: 74 VLASRPHTL 82
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FVG L T L+ FS +Y V ++ D T +++G+GFV+F D N
Sbjct: 19 LFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN-------- 69
Query: 271 MNGVYCSSRPMRID 284
G +SRP +D
Sbjct: 70 CVGTVLASRPHTLD 83
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFAN 372
+FVG LD + E LR FSQ+GE++ I K G GFV+F +
Sbjct: 19 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++G+L + E + F G+ V + ++K G+GF+ +R AE +
Sbjct: 25 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAE--IAKV 76
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237
MP + R+ +A C S+ V +L V++ +L+E FS + V+
Sbjct: 77 ELDNMPLRGKQLRVRFA-----------CHSASLTVRNLPQYVSNELLEEAFSV-FGQVE 124
Query: 238 GAKVIIDSNTGRTKGYGFVRF 258
A VI+D + GR G G V F
Sbjct: 125 RAVVIVD-DRGRPSGKGIVEF 144
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384
+ + +FVG L D+++E++R+ F ++G+ V I KG GF++ +R AE+A +L
Sbjct: 20 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRL-ETRTLAEIAKVEL 78
Query: 385 QGTAIGKQTVRLSWG 399
+ + +R+ +
Sbjct: 79 DNMPLRGKQLRVRFA 93
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 50/166 (30%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FVG+L PD+T+ +++ F KY K +V I + KG+GF+R +R + E
Sbjct: 25 LFVGNLPPDITEEEMRKLFE-KYG--KAGEVFIHKD----KGFGFIRL-----ETRTLAE 72
Query: 271 MNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATI 330
+ V + P+R RV+ + ++A++
Sbjct: 73 IAKVELDNMPLR----------------------------GKQLRVRFA-----CHSASL 99
Query: 331 FVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFA 371
V L VS+E L E FS FG++ + V G G V+F+
Sbjct: 100 TVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFS 145
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 203 TEACSDLSIFVGDL-----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257
TE + ++FVG+L AP++ I + F+ K ++D G T+ +G+V
Sbjct: 2 TEPTTAFNLFVGNLNFNKSAPELKTGI-SDVFA------KNDLAVVDVRIGMTRKFGYVD 54
Query: 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQ 317
F + +A+ E+ G+ ++++ PK
Sbjct: 55 FESAEDLEKAL-ELTGLKVFGNEIKLE--KPK---------------------------- 83
Query: 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI-LSVKIPVGKGCGFVQFANSRKD 376
G S E + T+ L V+ ++L+E F EI L K KG +++F + D
Sbjct: 84 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEF-KTEAD 142
Query: 377 AEVALQKLQGTAIGKQTVRLSWGRNP 402
AE ++ QGT I +++ L + P
Sbjct: 143 AEKTFEEKQGTEIDGRSISLYYTGEP 168
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 142 VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR 201
VV+V++ G + +G+V+F S EK L+ + N + G D
Sbjct: 39 VVDVRI------GMTRKFGYVDFESAEDLEKALELTGLKVFGN-----EIKLEKPKGKDS 87
Query: 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261
+ E + ++ +L VT L+E F A++ + S G++KG ++ F E
Sbjct: 88 KKERDAR-TLLAKNLPYKVTQDELKEVFED------AAEIRLVSKDGKSKGIAYIEFKTE 140
Query: 262 NERSRAMTEMNGVYCSSRPMRI 283
+ + E G R + +
Sbjct: 141 ADAEKTFEEKQGTEIDGRSISL 162
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+IF+ +L + + L +TFS+ + ++ KV+ D N +KGYGFV F + RA+
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIE 63
Query: 270 EMNGVYCSSRPMRIDVATPKKAS----GXXXXXXXXALVLAGGPGSNGA 314
+MNG+ + R + + +K G + GPGS A
Sbjct: 64 KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAE 378
G + IF+ LD + ++ L + FS FG ILS K+ KG GFV F +++ AE
Sbjct: 1 GPLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF-ETQEAAE 59
Query: 379 VALQKLQGTAIGKQTV 394
A++K+ G + + V
Sbjct: 60 RAIEKMNGMLLNDRKV 75
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 65
Query: 178 SGSLM 182
+G L+
Sbjct: 66 NGMLL 70
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
E+ D +++V +L +TD L F KY S+ ++ D TGR +G FVR+ E
Sbjct: 9 ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 67
Query: 264 RSRAMTEMNGVY--CSSRPMRIDVA 286
A++ +N V S+P+ + +A
Sbjct: 68 AQEAISALNNVIPEGGSQPLSVRLA 92
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L + + L F G +V ++R+K TG+ G FV + R A++ + +
Sbjct: 16 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 75
Query: 178 SGSLMPNTDQPFRLNWATFSG 198
+ + QP + A G
Sbjct: 76 NNVIPEGGSQPLSVRLAEEHG 96
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 115 TKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY---SRAAA 170
++ +++G + + +E L C S+ G V+N+K++ + QTG+S+GY F+EF S A+A
Sbjct: 2 SRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
Query: 171 EKVLQSY 177
+ L Y
Sbjct: 61 VRNLNGY 67
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+++G + D T+ + + S+ P V K++ D TGR+KGY F+ F D + A+
Sbjct: 5 VYLGSIPYDQTEEQILDLCSNVGP-VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63
Query: 271 MNGVYCSSRPMRIDVATPKKASG 293
+NG SR ++ ++ SG
Sbjct: 64 LNGYQLGSRFLKCGYSSNSDISG 86
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 115 TKTIWIGDL-FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY---SRAAA 170
++ +++G + + +E L C S+ G V+N+K++ + QTG+S+GY F+EF S A+A
Sbjct: 3 SRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
Query: 171 EKVLQSY 177
+ L Y
Sbjct: 62 VRNLNGY 68
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+++G + D T+ + + S+ P V K++ D TGR+KGY F+ F D + A+
Sbjct: 6 VYLGSIPYDQTEEQILDLCSNVGP-VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 64
Query: 271 MNGVYCSSRPMRIDVATPKKASG 293
+NG SR ++ ++ SG
Sbjct: 65 LNGYQLGSRFLKCGYSSNSDISG 87
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 23/143 (16%)
Query: 152 QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL-- 209
Q Q + + F+EF S + T Q + F G + D
Sbjct: 48 QINQDKNFAFLEFRS---------------VDETTQAMAFDGIIFQGQSLKIRRPHDYQP 92
Query: 210 -----SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264
+F+G L + D ++E +S P +K ++ DS TG +KGY F + D N
Sbjct: 93 LPGAHKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKDSATGLSKGYAFCEYVDINVT 151
Query: 265 SRAMTEMNGVYCSSRPMRIDVAT 287
+A+ +NG+ + + + A+
Sbjct: 152 DQAIAGLNGMQLGDKKLLVQRAS 174
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++IG L +++++ + + G + ++++ TG S+GY F E+ ++ +
Sbjct: 99 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 158
Query: 178 SG 179
+G
Sbjct: 159 NG 160
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++ V L ++T L+ FSS V+ AK+I D G + GYGFV + + RA+
Sbjct: 6 NLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 64
Query: 270 EMNGVYCSSRPMRIDVATP 288
+NG+ S+ +++ A P
Sbjct: 65 TLNGLRLQSKTIKVSYARP 83
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179
M + L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G
Sbjct: 16 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 68
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEVALQK 383
+ V L +++ ++LR FS GE+ S K+ K G GFV + + KDAE A+
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA-KDAERAINT 65
Query: 384 LQGTAIGKQTVRLSWGR 400
L G + +T+++S+ R
Sbjct: 66 LNGLRLQSKTIKVSYAR 82
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 23/143 (16%)
Query: 152 QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL-- 209
Q Q + + F+EF S + T Q + F G + D
Sbjct: 46 QINQDKNFAFLEFRS---------------VDETTQAMAFDGIIFQGQSLKIRRPHDYQP 90
Query: 210 -----SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264
+F+G L + D ++E +S P +K ++ DS TG +KGY F + D N
Sbjct: 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKDSATGLSKGYAFCEYVDINVT 149
Query: 265 SRAMTEMNGVYCSSRPMRIDVAT 287
+A+ +NG+ + + + A+
Sbjct: 150 DQAIAGLNGMQLGDKKLLVQRAS 172
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++IG L +++++ + + G + ++++ TG S+GY F E+ ++ +
Sbjct: 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156
Query: 178 SG 179
+G
Sbjct: 157 NG 158
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
+D ++FVG+L V + IL E F P K I G+ K +GFV F S
Sbjct: 15 ADRTVFVGNLEARVREEILYELFLQAGPLTK--VTICKDREGKPKSFGFVCFKHPESVSY 72
Query: 267 AMTEMNGVYCSSRPMRIDVATP 288
A+ +NG+ RP I+V+ P
Sbjct: 73 AIALLNGIRLYGRP--INVSGP 92
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++ V L + T L+ FSS V+ AK+I D G + GYGFV + + RA+
Sbjct: 21 NLIVNYLPQNXTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 270 EMNGVYCSSRPMRIDVATP 288
+NG+ S+ +++ A P
Sbjct: 80 TLNGLRLQSKTIKVSYARP 98
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179
L + FS G+V + K+IR+K G S GYGFV + + AE+ + + +G
Sbjct: 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANSRKDAEVALQK 383
+ V L + + ++LR FS GE+ S K+ K G GFV + + KDAE A+
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA-KDAERAINT 80
Query: 384 LQGTAIGKQTVRLSWGR 400
L G + +T+++S+ R
Sbjct: 81 LNGLRLQSKTIKVSYAR 97
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK---GCGF--VQFANSRKDAEVAL 381
+ T++VG L ++E + E FS+ G+I + + + K CGF V++ SR DAE A+
Sbjct: 18 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKTACGFCFVEYY-SRADAENAM 76
Query: 382 QKLQGTAIGKQTVRLSW 398
+ + GT + + +R W
Sbjct: 77 RYINGTRLDDRIIRTDW 93
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G+L + E ++ FS +G + + + +K + G+ FVE+YSRA AE ++
Sbjct: 20 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK-TACGFCFVEYYSRADAENAMRY 78
Query: 177 YSGSLMPNTDQPFRLNW 193
+G+ + D+ R +W
Sbjct: 79 INGTRL--DDRIIRTDW 93
>pdb|2DNK|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 4
Rna Binding Protein
Length = 105
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKL 384
+FVG L+ S++D+R F FG I I G KGC FV+++ S +A+ A+ L
Sbjct: 18 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYS-SHAEAQAAINAL 76
Query: 385 QGT 387
G+
Sbjct: 77 HGS 79
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+ +++G L E + F G + ++R G S+G FV++ S A A+ +
Sbjct: 16 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAIN 74
Query: 176 SYSGS-LMPNTDQPFRLNWA 194
+ GS MP + +A
Sbjct: 75 ALHGSQTMPGASSSLVVKFA 94
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEV 379
+ +GE +N +FV DV + +L E F FG + VKI G FV+F + A+
Sbjct: 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAK- 80
Query: 380 ALQKLQGTAIGKQTVRLSWGRNPGNK 405
A++++ G + Q + + + + P +
Sbjct: 81 AIEEVHGKSFANQPLEVVYSKLPAKR 106
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 307 GGPGSNGARVQ-----GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361
G GS+G Q GSQ +G A +F+ L + D+DL + F FG ++S K+ +
Sbjct: 1 GSSGSSGLTQQSIGAAGSQKEGP-EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 59
Query: 362 GK-----GC-GFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401
K C GFV + N A+ A+Q + G IG + +++ R+
Sbjct: 60 DKQTNLSKCFGFVSYDNPV-SAQAAIQSMNGFQIGMKRLKVQLKRS 104
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRT 250
L + + + E ++F+ L + D L + F + +V AKV ID T +
Sbjct: 8 LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLS 66
Query: 251 KGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
K +GFV + + A+ MNG + +++ + K S
Sbjct: 67 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E ++I L + L F G VV+ KV +KQT S+ +GFV + + +A+
Sbjct: 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 83
Query: 174 LQSYSG 179
+QS +G
Sbjct: 84 IQSMNG 89
>pdb|1NO8|A Chain A, Solution Structure Of The Nuclear Factor Aly Rbd Domain
Length = 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+ V +L V+D+ +QE F+ ++ ++K A V D +GR+ G V F + + +AM +
Sbjct: 31 LLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQ 88
Query: 271 MNGVYCSSRPMRIDVAT 287
NGV RPM I + T
Sbjct: 89 YNGVPLDGRPMNIQLVT 105
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG R + SDL I +G L T+ L+E FS+ + V +V D TG +KG+GFV
Sbjct: 6 SGVKRAVQKTSDL-IVLG-LPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFV 62
Query: 257 RFGDENERSRAMTE---MNGVYCSSR 279
RF + + + M++ ++G +C +
Sbjct: 63 RFTEYETQVKVMSQRHMIDGRWCDCK 88
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEV 379
+ + V L +++DL+E FS FGE+L V++ KG GFV+F +V
Sbjct: 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 73
Query: 380 ALQK 383
Q+
Sbjct: 74 MSQR 77
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
E L FS G+V+ V+V ++ +TG S+G+GFV F KV+
Sbjct: 29 EQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQK 383
IFVG L D +E +RE F FGE+ S+++P+ +G F+ F ++ +K
Sbjct: 4 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 63
Query: 384 LQGTAIGKQTVRLS 397
+ K ++++
Sbjct: 64 YHNVGLSKCEIKVA 77
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
IFVG L+PD + ++E F + V+ ++ +D+ T + +G+ F+ F +E + M
Sbjct: 4 IFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 60
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L+ T+ L+E FS KY + ++ D + R++G+ FV F + ++ A NG+
Sbjct: 54 LSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 112
Query: 276 CSSRPMRIDVATPKK 290
R +R+D + K+
Sbjct: 113 LDGRRIRVDFSITKR 127
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVA 380
N + V L ++ DLRE FS++G I V I +G FV F N DA+ A
Sbjct: 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV-DDAKEA 104
Query: 381 LQKLQGTAIGKQTVRLSW 398
++ G + + +R+ +
Sbjct: 105 KERANGMELDGRRIRVDF 122
>pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSR 374
G S ++ +FVG D+++++LRE FSQ+G+++ V IP + FV FA+ +
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L + D ++E +S P +K ++ DS TG +KGY F + D N +A+
Sbjct: 117 LFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175
Query: 271 MNGVYCSSRPMRIDVAT 287
+NG+ + + + A+
Sbjct: 176 LNGMQLGDKKLLVQRAS 192
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D ++IG L +++++ + + G + ++++ TG S+GY F E+ ++
Sbjct: 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 171
Query: 173 VLQSYSG 179
+ +G
Sbjct: 172 AIAGLNG 178
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQK 383
IFVG L D +E +RE F FGE+ S+++P+ +G F+ F ++ +K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 384 LQGTAIGKQTVRLS 397
+ K ++++
Sbjct: 62 YHNVGLSKCEIKVA 75
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
IFVG L+PD + ++E F + V+ ++ +D+ T + +G+ F+ F +E + M
Sbjct: 2 IFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 58
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L+ T+ L+E FS KY + ++ D + R++G+ FV F + ++ A NG+
Sbjct: 23 LSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81
Query: 276 CSSRPMRIDVATPKK 290
R +R+D + K+
Sbjct: 82 LDGRRIRVDFSITKR 96
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVA 380
N + V L ++ DLRE FS++G I V I +G FV F N DA+ A
Sbjct: 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV-DDAKEA 73
Query: 381 LQKLQGTAIGKQTVRLSW 398
++ G + + +R+ +
Sbjct: 74 KERANGMELDGRRIRVDF 91
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+ L+E FS KY + ++ D + R++G+ FV F + ++ A NG+ R
Sbjct: 25 TERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 83
Query: 281 MRIDVATPKK 290
+R+D + K+
Sbjct: 84 IRVDFSITKR 93
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVA 380
N + V L ++ DLRE FS++G I V I +G FV F N DA+ A
Sbjct: 12 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV-DDAKEA 70
Query: 381 LQKLQGTAIGKQTVRLSW 398
++ G + + +R+ +
Sbjct: 71 KERANGMELDGRRIRVDF 88
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKD 376
G + ++VG L +V D+ L F FG+I ++IP+ +G FV+F + +D
Sbjct: 1 GSTTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-ED 59
Query: 377 AEVALQKLQGTAIGKQTVRLSWGR 400
A A+ + + + +T+R++ +
Sbjct: 60 AAAAIDNMNESELFGRTIRVNLAK 83
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG LA +V D +L F + + ++ +D T + +G+ FV F + + A+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 271 MNGVYCSSRPMRIDVA 286
MN R +R+++A
Sbjct: 67 MNESELFGRTIRVNLA 82
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+ +++G L +D+ LH F G + ++++ + +T + G+ FVEF
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>pdb|1X4E|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 2
Length = 85
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180
D+ + C + G++V+ K I +K T + +GYGFV+F S +AA+K + + S
Sbjct: 19 DQDLVKLCQPY-GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS 70
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+++ L P TD L + Y + K I+D T + KGYGFV F + +A+T
Sbjct: 8 LYIRGLQPGTTDQDLVK-LCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66
Query: 271 MN 272
+
Sbjct: 67 LK 68
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKD 376
G S ++ +++ L +D+DL + +G+I+S K + KG GFV F +S
Sbjct: 1 GSSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF-DSPSA 59
Query: 377 AEVALQKLQGTAIGKQTVRLS 397
A+ A+ L+ + + Q + S
Sbjct: 60 AQKAVTALKASGVQAQMAKQS 80
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG LA +V D +L F + + ++ +D T + +G+ FV F + + A+
Sbjct: 15 LYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73
Query: 271 MNGVYCSSRPMRIDVATPKK 290
MN R +R+++A P +
Sbjct: 74 MNESELFGRTIRVNLAKPMR 93
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 321 SDGESNNAT----IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQF 370
S G S AT ++VG L +V D+ L F FG+I ++IP+ +G FV+F
Sbjct: 2 SSGSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 61
Query: 371 ANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
+ +DA A+ + + + +T+R++ +
Sbjct: 62 ELA-EDAAAAIDNMNESELFGRTIRVNLAK 90
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+ +++G L +D+ LH F G + ++++ + +T + G+ FVEF
Sbjct: 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 61
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384
+ + +FVG L D+++E++R+ F ++G+ V I KG GF++ +R AE+A +L
Sbjct: 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRL-ETRTLAEIAKVEL 71
Query: 385 QGTAI-GKQ 392
+ GKQ
Sbjct: 72 DNMPLRGKQ 80
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FVG+L PD+T+ +++ F KY K +V I + KG+GF+R +R + E
Sbjct: 18 LFVGNLPPDITEEEMRKLFE-KYG--KAGEVFIHKD----KGFGFIRL-----ETRTLAE 65
Query: 271 MNGVYCSSRPMR 282
+ V + P+R
Sbjct: 66 IAKVELDNMPLR 77
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L + D ++E +S P +K ++ DS TG +KGY F + D N +A+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 271 MNGVYCSSRPMRIDVAT 287
+NG+ + + + A+
Sbjct: 63 LNGMQLGDKKLLVQRAS 79
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 146 KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA 205
K+I N +T + E E A AEKV + Y+ + + + TF+ ++
Sbjct: 4 KLILNGKTLKGET--TTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHH 61
Query: 206 CSDL------SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259
+ S+ V +L + L+ F KY V + D T ++G+ FVRF
Sbjct: 62 HHHMDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFH 120
Query: 260 DENERSRAMTEMNGVYCSSRPMRIDVA 286
D+ + AM M+G R +R+ +A
Sbjct: 121 DKRDAEDAMDAMDGAVLDGRELRVQMA 147
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+ V +L + L+ F KY V + D T ++G+ FVRF D+ + AM
Sbjct: 49 SLKVDNLTYRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 107
Query: 270 EMNGVYCSSRPMRIDVA 286
M+G R +R+ +A
Sbjct: 108 AMDGAVLDGRELRVQMA 124
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
Length = 88
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI--------PVGKGCGFVQFANSRKD 376
S+ +FVG + S++DLRE F Q+G + + + P KGC FV F +RK
Sbjct: 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFY-TRKA 59
Query: 377 AEVALQKLQGTAI 389
A A L +
Sbjct: 60 ALEAQNALHNMKV 72
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQ 175
+++G + E L F G V + V+R++ QS+G FV FY+R AA +
Sbjct: 6 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 65
Query: 176 S-YSGSLMPNTDQPFRLNWA 194
+ ++ ++P P ++ A
Sbjct: 66 ALHNMKVLPGMHHPIQMKPA 85
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ D T L++ FS K+ V + +D TGR++G+GFV F + + M +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFS-KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVALQK 383
+F+G L D + +DL++ FS+FGE++ + + +G GFV F S +V QK
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++IG L + L + FS G+VV+ + + TG+S G+GFV F + +KV+
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 178 SGSLMPNTDQPFR 190
L P R
Sbjct: 62 EHKLNGKVIDPKR 74
>pdb|2DNH|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 5
Rna Binding Protein
Length = 105
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKL 384
+FVG L+ S+ED+ F FG I + G KGC FV+F +S +A+ A+ L
Sbjct: 18 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKF-SSHTEAQAAIHAL 76
Query: 385 QGT 387
G+
Sbjct: 77 HGS 79
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
D +++V L ++ +++ FS +Y + +++++D TG ++G GF+RF E A
Sbjct: 1 DANLYVSGLPKTMSQKEMEQLFS-QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEA 59
Query: 268 MTEMNG 273
+ +NG
Sbjct: 60 IKGLNG 65
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
FVG L+ D + L++ F+ K+ V + D NTGR++G+GF+ F D + + +
Sbjct: 15 FVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQ- 72
Query: 272 NGVYCSSRPMRID--VATPKKA 291
+ R+D V PKKA
Sbjct: 73 -------KEHRLDGRVIDPKKA 87
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSR 374
S E + FVG L D S +DL++ F++FGE++ I +G GF+ F ++
Sbjct: 5 SKNEEDAGKXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAA 64
Query: 375 KDAEVALQK 383
+V QK
Sbjct: 65 SVEKVLDQK 73
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
G N + ++ ++G L + L + F+ G+VV+ + + TG+S G+GF+ F
Sbjct: 1 GINASKNEEDAGKXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILF 60
Query: 165 YSRAAAEKVL 174
A+ EKVL
Sbjct: 61 KDAASVEKVL 70
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ + ++IG L E L N + G++ + V+R+ + +S G+GFV F S A +
Sbjct: 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 83
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGS 199
+ + S+ +P R SGS
Sbjct: 84 AAMAARPHSIDGRVVEPKRAVAREESGS 111
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L+ + T+ L+ + ++ + V+ D + R++G+GFV F E AM
Sbjct: 30 LFIGGLSFETTEESLR-NYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-- 86
Query: 271 MNGVYCSSRPMRID--VATPKKA 291
++RP ID V PK+A
Sbjct: 87 ------AARPHSIDGRVVEPKRA 103
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEI---LSVKIPVGK---GCGFVQFAN 372
+F+G L + ++E LR + Q+G++ + ++ P K G GFV F++
Sbjct: 30 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 197 SGSDRRTEACSDLSI-FVGDLAPDVTDSILQETFSS--KYPSVKGAKVIIDSNTGRTKGY 253
SGS E + + + FV +LA VT+ IL+++FS K VK + K Y
Sbjct: 3 SGSSGDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVK-----------KLKDY 51
Query: 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP--KKASG 293
FV F D +AM EMNG + I +A P KK SG
Sbjct: 52 AFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRSG 93
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG LA +V D +L F + + ++ +D T + +G+ FV F + + A+
Sbjct: 5 LYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 63
Query: 271 MNGVYCSSRPMRIDVA 286
MN R +R+++A
Sbjct: 64 MNESELFGRTIRVNLA 79
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQK 383
++VG L +V D+ L F FG+I ++IP+ +G FV+F + +DA A+
Sbjct: 5 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-EDAAAAIDN 63
Query: 384 LQGTAIGKQTVRLS 397
+ + + +T+R++
Sbjct: 64 MNESELFGRTIRVN 77
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+ +++G L +D+ LH F G + ++++ + +T + G+ FVEF
Sbjct: 3 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 51
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG LA +V D +L F + + ++ +D T + +G+ FV F + + A+
Sbjct: 66 LYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124
Query: 271 MNGVYCSSRPMRIDVA 286
MN R +R+++A
Sbjct: 125 MNESELFGRTIRVNLA 140
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQK 383
++VG L +V D+ L F FG+I ++IP+ +G FV+F + +DA A+
Sbjct: 66 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-EDAAAAIDN 124
Query: 384 LQGTAIGKQTVRLS 397
+ + + +T+R++
Sbjct: 125 MNESELFGRTIRVN 138
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+ +++G L +D+ LH F G + ++++ + +T + G+ FVEF
Sbjct: 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 112
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++VG LA +V D +L F + + ++ +D T + +G+ FV F + + A+
Sbjct: 10 LYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68
Query: 271 MNGVYCSSRPMRIDVA 286
MN R +R+++A
Sbjct: 69 MNESELFGRTIRVNLA 84
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQK 383
++VG L +V D+ L F FG+I ++IP+ +G FV+F + +DA A+
Sbjct: 10 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA-EDAAAAIDN 68
Query: 384 LQGTAIGKQTVRLSWGR 400
+ + + +T+R++ +
Sbjct: 69 MNESELFGRTIRVNLAK 85
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+ +++G L +D+ LH F G + ++++ + +T + G+ FVEF
Sbjct: 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 56
>pdb|3NS5|A Chain A, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
pdb|3NS5|B Chain B, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
Length = 91
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179
L + FS G+VVN++ ++ TG+++G+ FVE S A+K+++S+ G
Sbjct: 29 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 218 PDVTDSILQETFSSKYPSVKGAKVI-----IDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
P +L++ +S + K KV+ ID TG+TKG+ FV G N+ + + +
Sbjct: 18 PSAKVPVLKKALTSLFS--KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75
Query: 273 G 273
G
Sbjct: 76 G 76
>pdb|2CQH|A Chain A, Solution Structure Of The Rna Binding Domain Of Igf-Ii
Mrna- Binding Protein 2
Length = 93
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+++G+L+P VT L++ F + + G +V++ S GY FV + D+N RA+
Sbjct: 11 LYIGNLSPAVTADDLRQLFGDRKLPLAG-QVLLKS------GYAFVDYPDQNWAIRAIET 63
Query: 271 MNG-VYCSSRPMRIDVATPKK 290
++G V + M +D + KK
Sbjct: 64 LSGKVELHGKIMEVDYSVSKK 84
>pdb|3NS6|A Chain A, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
pdb|3NS6|B Chain B, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
Length = 100
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179
L + FS G+VVN++ ++ TG+++G+ FVE S A+K+++S+ G
Sbjct: 29 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 218 PDVTDSILQETFSSKYPSVKGAKVI-----IDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
P +L++ +S + K KV+ ID TG+TKG+ FV G N+ + + +
Sbjct: 18 PSAKVPVLKKALTSLFS--KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75
Query: 273 G 273
G
Sbjct: 76 G 76
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-----SRKDAEVALQKL 384
+FV + + ++ED+ + F+++GEI ++ + + + G+++ + K+A+ A++ L
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 385 QGTAIGKQTVRLSW 398
G + Q + + W
Sbjct: 70 NGQDLMGQPISVDW 83
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + T+ + + F+ +Y +K + +D TG KGY V + E AM
Sbjct: 10 LFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
Query: 271 MNGVYCSSRPMRID 284
+NG +P+ +D
Sbjct: 69 LNGQDLMGQPISVD 82
Score = 35.8 bits (81), Expect = 0.045, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188
E +H+ F+ G++ N+ + +++TG +GY VE+ + A+ ++ +G + QP
Sbjct: 21 EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQP 78
Query: 189 FRLNW 193
++W
Sbjct: 79 ISVDW 83
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGF------VQFANSRKDAEVALQ 382
+FV ++ + +++++E F +GEI ++ + + + GF V++ + K A A +
Sbjct: 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY-ETHKQALAAKE 132
Query: 383 KLQGTAIGKQTVRLSW 398
L G I QT+++ W
Sbjct: 133 ALNGAEIMGQTIQVDW 148
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + + +QE F Y +K + +D TG +KGY V + + A
Sbjct: 75 LFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133
Query: 271 MNGVYCSSRPMRID---VATPKKAS 292
+NG + +++D V PK+
Sbjct: 134 LNGAEIMGQTIQVDWCFVKGPKRVK 158
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++ + E + F G++ N+ + +++TG S+GY VE+ + A ++
Sbjct: 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDR 201
+G+ + Q +++W G R
Sbjct: 134 LNGAEIMG--QTIQVDWCFVKGPKR 156
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 137 SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181
SH Q V+++RNK +GQS G+ FVEF A + +++ SL
Sbjct: 24 SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL 68
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++IG L + L F G+V V+R+ T +S G+GFV F +A +KVL
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 178 SGSLMPNTDQP 188
L T P
Sbjct: 63 RHELDSKTIDP 73
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEI---LSVKIPVGK---GCGFVQFAN 372
+F+G L + E LRE F QFGE+ L ++ P+ K G GFV F +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 51
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261
+F+G L+ T L+E F ++ VK V+ D T R++G+GFV F D+
Sbjct: 3 MFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 52
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-----SRKDAEVALQKL 384
+FV + + ++ED+ + F+++GEI ++ + + + G+++ + K+A+ A++ L
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 385 QGTAIGKQTVRLSW 398
G + Q + + W
Sbjct: 70 NGQDLMGQPISVDW 83
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188
E +H+ F+ G++ N+ + +++TG +GY VE+ + A+ ++ +G + QP
Sbjct: 21 EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQP 78
Query: 189 FRLNWATFSG 198
++W G
Sbjct: 79 ISVDWCFVRG 88
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + T+ + + F+ +Y +K + +D TG KGY V + E AM
Sbjct: 10 LFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
Query: 271 MNGVYCSSRPMRID 284
+NG +P+ +D
Sbjct: 69 LNGQDLMGQPISVD 82
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++FV + D T+S L+ F Y +K ++ +G+ +GY F+ + E + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 270 EMNGVYCSSRPMRIDVATPKKASG 293
+G R + +DV + G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKG 186
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
++ N D KT+++ + + E+ L F G + + ++ +K++G+ GY F+E+
Sbjct: 93 NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-----SRKDAEVALQKL 384
+FV + + ++ED+ + F+++GEI ++ + + + G+++ + K+A+ A++ L
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 385 QGTAIGKQTVRLSW 398
G + Q + + W
Sbjct: 70 NGQDLMGQPISVDW 83
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188
E +H+ F+ G++ N+ + +++TG +GY VE+ + A+ ++ +G + QP
Sbjct: 21 EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQP 78
Query: 189 FRLNWATFSG 198
++W G
Sbjct: 79 ISVDWCFVRG 88
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + T+ + + F+ +Y +K + +D TG KGY V + E AM
Sbjct: 10 LFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
Query: 271 MNGVYCSSRPMRID 284
+NG +P+ +D
Sbjct: 69 LNGQDLMGQPISVD 82
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-----SRKDAEVALQKL 384
+FV + + ++ED+ + F+++GEI ++ + + + G+++ + K+A+ A++ L
Sbjct: 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84
Query: 385 QGTAIGKQTVRLSW 398
G + Q + + W
Sbjct: 85 NGQDLMGQPISVDW 98
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + T+ + + F+ +Y +K + +D TG KGY V + E AM
Sbjct: 25 LFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83
Query: 271 MNGVYCSSRPMRID 284
+NG +P+ +D
Sbjct: 84 LNGQDLMGQPISVD 97
Score = 35.4 bits (80), Expect = 0.064, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188
E +H+ F+ G++ N+ + +++TG +GY VE+ + A+ ++ +G + QP
Sbjct: 36 EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQP 93
Query: 189 FRLNW 193
++W
Sbjct: 94 ISVDW 98
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-----SRKDAEVALQKL 384
+FV + + ++ED+ + F+++GEI ++ + + + G+++ + K+A+ A++ L
Sbjct: 12 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 71
Query: 385 QGTAIGKQTVRLSW 398
G + Q + + W
Sbjct: 72 NGQDLMGQPISVDW 85
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188
E +H+ F+ G++ N+ + +++TG +GY VE+ + A+ ++ +G + QP
Sbjct: 23 EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQP 80
Query: 189 FRLNWATFSG 198
++W G
Sbjct: 81 ISVDWCFVRG 90
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + T+ + + F+ +Y +K + +D TG KGY V + E AM
Sbjct: 12 LFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 70
Query: 271 MNGVYCSSRPMRID 284
+NG +P+ +D
Sbjct: 71 LNGQDLMGQPISVD 84
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
T+++ +L + L+ FS G+VV V ++++K T +S+G F+ F + +A+
Sbjct: 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 72
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264
A S +++V +L +T++ L FS KY V ++ D +T ++KG F+ F D++
Sbjct: 13 APSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 71
Query: 265 SRAMTEMNGVYCSSRPMRIDVA 286
+N R ++ +A
Sbjct: 72 QNCTRAINNKQLFGRVIKASIA 93
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANSRKDAEVALQ 382
+ +G L +V+ + + E FS +G+I + +PV KG +V+F N +AE AL+
Sbjct: 7 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP-DEAEKALK 65
Query: 383 KLQGTAIGKQTV 394
+ G I Q +
Sbjct: 66 HMDGGQIDGQEI 77
Score = 32.0 bits (71), Expect = 0.68, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-----TKGYGFVRFGDENERS 265
+ +G L +VT + E FS+ Y +K +ID R +KGY +V F + +E
Sbjct: 7 VHIGRLTRNVTKDHIMEIFST-YGKIK----MIDMPVERMHPHLSKGYAYVEFENPDEAE 61
Query: 266 RAMTEMNG 273
+A+ M+G
Sbjct: 62 KALKHMDG 69
>pdb|3TP2|A Chain A, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
pdb|3TP2|B Chain B, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
Length = 229
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (21%)
Query: 326 NNATIFVGALDSDVSDEDL---------REPFSQFGEILSVKIPVGKGCGFVQFANSRKD 376
N T++VG +D ++ + L R FS+ G+I ++ K CGFV+F + +
Sbjct: 135 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKF-KYQAN 193
Query: 377 AEVALQKLQGTAIGKQTVRLSWGRNPGNKQW 407
AE A + A+ QT+ L P +K+W
Sbjct: 194 AEFAKE-----AMSNQTLLL-----PSDKEW 214
>pdb|3U1L|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
pdb|3U1M|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
Length = 240
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 20/91 (21%)
Query: 326 NNATIFVGALDSDVSDEDL---------REPFSQFGEILSVKIPVGKGCGFVQFANSRKD 376
N T++VG +D ++ + L R FS+ G+I ++ K CGFV+F + +
Sbjct: 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKF-KYQAN 191
Query: 377 AEVALQKLQGTAIGKQTVRLSWGRNPGNKQW 407
AE A + A+ QT+ L P +K+W
Sbjct: 192 AEFAKE-----AMSNQTLLL-----PSDKEW 212
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 319 SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAE 378
S S G + +FV L + V++E L + FSQFG++ VK K F+ F + R A
Sbjct: 3 SGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHF-DERDGAV 59
Query: 379 VALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
A++++ G + + + + + + P K+
Sbjct: 60 KAMEEMNGKDLEGENIEIVFAKPPDQKR 87
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 211 IFVGDLAPDVTDSILQETFSS--KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
+FV +LA VT+ IL++ FS K VK + K Y F+ F + + +AM
Sbjct: 14 LFVRNLANTVTEEILEKAFSQFGKLERVK-----------KLKDYAFIHFDERDGAVKAM 62
Query: 269 TEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGS 311
EMNG + I A P A A GP S
Sbjct: 63 EEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQA---ASGPSS 102
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-----SRKDAEVALQKL 384
+FV + + ++ED+ + F+++GEI ++ + + + G+++ + K+A+ A++ L
Sbjct: 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85
Query: 385 QGTAIGKQTVRLSW 398
G + Q + + W
Sbjct: 86 NGQDLMGQPISVDW 99
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188
E +H+ F+ G++ N+ + +++TG +GY VE+ + A+ ++ +G + QP
Sbjct: 37 EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQP 94
Query: 189 FRLNWATFSG 198
++W G
Sbjct: 95 ISVDWCFVRG 104
Score = 35.4 bits (80), Expect = 0.065, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + T+ + + F+ +Y +K + +D TG KGY V + E AM
Sbjct: 26 LFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84
Query: 271 MNGVYCSSRPMRID 284
+NG +P+ +D
Sbjct: 85 LNGQDLMGQPISVD 98
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FV+ Y A +L N RL S + T+A + V +L P
Sbjct: 50 YCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDAL----LCVANLPP 105
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+T +E + S++ ++ TG++KGYGF + ++ +RA +++ G
Sbjct: 106 SLTQQQFEE-LVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 140 GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
G + ++ +++TGQS+GYGF E+ + +A +
Sbjct: 120 GSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGF------VQFANSRKDAEVALQK 383
+FV ++ + +++++E F +GEI ++ + + + GF V++ + K A A +
Sbjct: 29 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY-ETHKQALAAKEA 87
Query: 384 LQGTAIGKQTVRLSW 398
L G I QT+++ W
Sbjct: 88 LNGAEIMGQTIQVDW 102
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV + + + +QE F Y +K + +D TG +KGY V + + A
Sbjct: 29 LFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87
Query: 271 MNGVYCSSRPMRID---VATPKK 290
+NG + +++D V PK+
Sbjct: 88 LNGAEIMGQTIQVDWCFVKGPKR 110
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 136 FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195
F G++ N+ + +++TG S+GY VE+ + A ++ +G+ + Q +++W
Sbjct: 47 FCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVDWCF 104
Query: 196 FSGSDR 201
G R
Sbjct: 105 VKGPKR 110
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FV+ Y A +L N RL S + T+A + V +L P
Sbjct: 50 YCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDAL----LCVANLPP 105
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+T +E + S++ ++ TG++KGYGF + ++ +RA +++ G
Sbjct: 106 SLTQQQFEE-LVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 140 GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
G + ++ +++TGQS+GYGF E+ + +A +
Sbjct: 120 GSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++FV + D T+S L+ F Y +K ++ +G+ +GY F+ + E + A
Sbjct: 104 TLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 270 EMNGVYCSSRPMRIDVATPKKASG 293
+G R + +DV + G
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKG 186
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
++ N D KT+++ + + E+ L F G + + ++ +K++G+ GY F+E+
Sbjct: 93 NDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151
>pdb|2DNO|A Chain A, Solution Structure Of Rna Binding Domain In Trinucleotide
Repeat Containing 4 Variant
Length = 102
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKL 384
+FVG L +DED+R+ F FG I + G KGC FV+F + +A+ A+ L
Sbjct: 15 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKF-QTHAEAQAAINTL 73
Query: 385 QGT 387
+
Sbjct: 74 HSS 76
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FV+ Y A +L N RL S + T+A + V +L P
Sbjct: 48 YCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDAL----LCVANLPP 103
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
+T +E + S++ ++ TG++KGYGF + ++ +RA +++ G
Sbjct: 104 SLTQQQFEE-LVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 157
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 140 GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
G + ++ +++TGQS+GYGF E+ + +A +
Sbjct: 118 GSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 150
>pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSR 374
+ +FVG D++ E+L++ F Q+GE++ V IP + FV FA+ +
Sbjct: 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++IG L + L F G+V V+R+ T +S G+GFV F +A +KVL
Sbjct: 28 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87
Query: 178 SGSLMPNTDQP 188
L T P
Sbjct: 88 RHELDSKTIDP 98
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
S +F+G L+ T L+E F ++ VK V+ D T R++G+GFV F D+ +
Sbjct: 24 SGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 82
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKA 291
+ + S+ + VA P++A
Sbjct: 83 VLAQSRH-ELDSKTIDPKVAFPRRA 106
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 325 SNNATIFVGALDSDVSDEDLREPFSQFGEI---LSVKIPVGK---GCGFVQFAN 372
S+ +F+G L + E LRE F QFGE+ L ++ P+ K G GFV F +
Sbjct: 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
E +N +FV DV + +L E F FG + VKI G FV+F + A+ A+++
Sbjct: 1 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAK-AIEE 57
Query: 384 LQGTAIGKQTVRLSWGR 400
+ G + Q + + + +
Sbjct: 58 VHGKSFANQPLEVVYSK 74
>pdb|3ULH|A Chain A, Crystal Structure Of A Rna Binding Domain Of Tho Complex
Subunit 4 Protein (Thoc4) From Homo Sapiens At 2.54 A
Resolution
Length = 107
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+ V +L V+D+ +QE F+ ++ ++K A V D +GR+ G V F + + +A +
Sbjct: 32 LLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAXKQ 89
Query: 271 MNGVYCSSRPMRIDVAT 287
NGV RP I + T
Sbjct: 90 YNGVPLDGRPXNIQLVT 106
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275
L+ T+ L+E FS KY + ++ D + R++G+ FV F + ++ A NG+
Sbjct: 23 LSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81
Query: 276 CSSRPMRI 283
R +R+
Sbjct: 82 LDGRRIRV 89
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANSRKDAEVA 380
N + V L ++ DLRE FS++G I V I +G FV F N DA+ A
Sbjct: 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV-DDAKEA 73
Query: 381 LQKLQGTAIGKQTVRLS 397
++ G + + +R+S
Sbjct: 74 KERANGMELDGRRIRVS 90
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 35.4 bits (80), Expect = 0.059, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 198 GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS----KYPSVKGAKVIIDSNTGRTKGY 253
GS + AC IFV +L D T +L++ F+ Y +K G++KG
Sbjct: 1 GSSGSSGACQ---IFVRNLPFDFTWKMLKDKFNECGHVLYADIK-------MENGKSKGC 50
Query: 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
G V+F RA MNG+ S R IDV + ASG
Sbjct: 51 GVVKFESPEVAERACRMMNGMKLSGR--EIDVRIDRNASG 88
>pdb|2DO0|A Chain A, Solution Structure Of The Rna Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein M
Length = 114
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++FV +L V L+E FS V+ I++ G+++G G V F E +A++
Sbjct: 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRAD--ILEDKDGKSRGIGTVTFEQSIEAVQAIS 74
Query: 270 EMNGVYCSSRPMRIDV---ATPK 289
NG RPM + + A PK
Sbjct: 75 MFNGQLLFDRPMHVKMDERALPK 97
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++ +L + + L FS G VV ++ +K G+S G G V F A + +
Sbjct: 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISM 75
Query: 177 YSGSLMPNTDQPFRLN 192
++G L+ D+P +
Sbjct: 76 FNGQLL--FDRPMHVK 89
>pdb|2F3J|A Chain A, The Solution Structure Of The Ref2-I Mrna Export Factor
(Residues 1-155)
Length = 177
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+ V +L V+D+ +QE F+ ++ ++K A V D +GR+ G V F + +AM
Sbjct: 90 KLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYD-RSGRSLGTADVHFERRADALKAMK 147
Query: 270 EMNGVYCSSRPMRIDVAT 287
+ GV RPM I +
Sbjct: 148 QYKGVPLDGRPMDIQLVA 165
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK-----GCGFVQFANSRKD 376
+G A + V LD VSD D++E F++FG + + + G V F R D
Sbjct: 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF-ERRAD 141
Query: 377 AEVALQKLQGTAI 389
A A+++ +G +
Sbjct: 142 ALKAMKQYKGVPL 154
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 307 GGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP------ 360
G GS+G Q + + I V + + ++RE FS FGE+ +V++P
Sbjct: 1 GSSGSSG------QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT 54
Query: 361 -VGKGCGFVQFANSRKDAEVALQKL-QGTAIGKQTVRLSW 398
+G GFV F +++DA+ A L T + + + L W
Sbjct: 55 GAHRGFGFVDFI-TKQDAKKAFNALCHSTHLYGRRLVLEW 93
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 330 IFVGALDSDVSDEDL-REPFSQFGEILSVKIPVGKG-------CGFVQFANSRKDAEVAL 381
I + L +++ DE+L RE F FG I + IP G+ C F F N + AE AL
Sbjct: 213 IXIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFXVFEN-KDSAERAL 271
Query: 382 QKLQGTAIGKQTVRLSWG 399
Q + +G + + +S
Sbjct: 272 QX-NRSLLGNREISVSLA 288
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 104 NGSNNNFTND-ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV 162
+GS+ +D + +T+++G+L + E + FS G + K+I + ++ Y FV
Sbjct: 3 SGSSGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFV 60
Query: 163 EFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR 201
EFY A L + +G + + ++NWAT S +
Sbjct: 61 EFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQK 97
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+++VG+L+ DVT+ ++ + FS P K K+I + + Y FV F + + + A+
Sbjct: 17 TLYVGNLSRDVTEVLILQLFSQIGP-CKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 73
Query: 270 EMNGVYCSSRPMRIDVAT 287
MNG + ++++ AT
Sbjct: 74 AMNGRKILGKEVKVNWAT 91
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 307 GGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG 366
G GS+G + DG+ T++VG L DV++ + + FSQ G S K+
Sbjct: 1 GSSGSSGMM----EDDGQPR--TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN 54
Query: 367 ----FVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
FV+F R DA AL + G I + V+++W P +++
Sbjct: 55 DPYCFVEFYEHR-DAAAALAAMNGRKILGKEVKVNWATTPSSQK 97
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
IFVG L+ + T ++ F ++ V A ++ D T R +G+GFV F E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESED 52
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQF 370
IFVG L + + ED++ F QFG++ + K G GFV F
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 48
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 136 FSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
F G+V + ++ +K T + G+GFV F S EKV +
Sbjct: 20 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59
>pdb|2LKZ|A Chain A, Solution Structure Of The Second Rrm Domain Of Rbm5
Length = 95
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 142 VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
V N+++I++KQT Q+ G+ FV+ S A ++LQ
Sbjct: 38 VNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQ 71
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 210 SIFVGDLAP-DVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
+I + ++AP V DSI+ T S Y S V ++I D T + +G+ FV+ + S+
Sbjct: 11 TIILRNIAPHTVVDSIM--TALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQ 68
Query: 267 AMTEMNGVYCSSRPMRIDVAT 287
+ + ++ P++ID T
Sbjct: 69 LLQILQSLH---PPLKIDGKT 86
>pdb|2LA4|A Chain A, Nmr Structure Of The C-Terminal Rrm Domain Of Poly(U)
Binding 1
Length = 101
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTA 388
T ++G + ++ DL F FG IL K KGC F+++ ++ + A V + L
Sbjct: 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKY-DTHEQAAVCIVALANFP 87
Query: 389 IGKQTVRLSWGR 400
+ +R WG+
Sbjct: 88 FQGRNLRTGWGK 99
>pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 327 NATIFVGALDSDVSDEDLREP----FSQFGEILSVKIPVG---KGCGFVQFANSRKDAEV 379
N TI++ L+ + ++L++ FSQFG+IL + + +G FV F A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEV-SSATN 67
Query: 380 ALQKLQGTAIGKQTVRLSWGR 400
AL+ +QG + +R+ + +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAK 88
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 70
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 71 SMQGFPFYDKPMRIQYA 87
>pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
Length = 282
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 327 NATIFVGALDSDVSDEDLREP----FSQFGEILSVKIPVG---KGCGFVQFANSRKDAEV 379
N TI++ L+ + ++L++ FSQFG+IL + + +G FV F A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEV-SSATN 67
Query: 380 ALQKLQGTAIGKQTVRLSWGR 400
AL+ +QG + +R+ + +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAK 88
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
E + +I++ +L + L+++ + + I+ S + + +G FV F + +
Sbjct: 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 64
Query: 264 RSRAMTEMNGVYCSSRPMRIDVA 286
+ A+ M G +PMRI A
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYA 87
>pdb|3Q2S|C Chain C, Crystal Structure Of Cfim68 RrmCFIM25 COMPLEX
pdb|3Q2S|D Chain D, Crystal Structure Of Cfim68 RrmCFIM25 COMPLEX
pdb|3Q2T|C Chain C, Crystal Structure Of Cfim68 RrmCFIM25RNA COMPLEX
pdb|3Q2T|D Chain D, Crystal Structure Of Cfim68 RrmCFIM25RNA COMPLEX
Length = 229
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
++IG+L W + L G ++ +K N+ GQS+G+ V S A+++K++
Sbjct: 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
IFVG + + ++ L+E F K+ V +I D+ R +G+GF+ F DE +A+
Sbjct: 13 IFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSR 374
IFVG + + + +LRE F +FG + V + +G GF+ F + +
Sbjct: 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 63
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
+GS+ +D K ++IG + +DE L F G++ + V++++ TG +G F+
Sbjct: 3 SGSSGMKDHDAIK-LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 61
Query: 164 FYSRAAAEKVLQS-YSGSLMPNTDQPFRLNWA 194
+ R +A K + + +P ++P ++ A
Sbjct: 62 YCERESALKAQSALHEQKTLPGMNRPIQVKPA 93
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQF 370
GS + + +F+G + ++ ++DL+ F +FG+I + + + KGC F+ +
Sbjct: 4 GSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 62
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+++ +L+P VT+ L F+ ++ KG + TGR +G F+ F ++ +A+
Sbjct: 28 LYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86
Query: 271 MNGVYCSSRPMRIDVATPKK 290
+NG + + I+ KK
Sbjct: 87 VNGYKLYGKILVIEFGKNKK 106
>pdb|2DNG|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 4h
Length = 103
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+ +VG+L + + F K S++ +++ D +T + KG+ +V F + + A+T
Sbjct: 17 TAYVGNLPFNTVQGDIDAIF--KDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALT 74
Query: 270 EMNGVYCSSRPMRIDVATPKK 290
+G R +R+D+A +K
Sbjct: 75 -YDGALLGDRSLRVDIAEGRK 94
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein 28
Length = 111
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E KT++I +L +E L G + V+V+ + T S+G F +F ++ AA+K
Sbjct: 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 73
Query: 174 LQSYS 178
L + S
Sbjct: 74 LAAAS 78
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQF 370
T+F+ L D +E L E QFG++ V++ + KGC F QF
Sbjct: 17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQF 64
>pdb|1WF1|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
Np_057951
Length = 110
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G+L + ET SKY V G V KGY FV++ +E A+
Sbjct: 30 VFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLG 81
Query: 271 MNGVYCSSRPMRIDVA 286
NG + + + I++A
Sbjct: 82 ENGRVLAGQTLDINMA 97
>pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 327 NATIFVGALDSDVSDEDLREP----FSQFGEILSVKIPVG---KGCGFVQFANSRKDAEV 379
N TI++ L+ + ++L++ FSQFG+IL + + +G FV F A
Sbjct: 8 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEV-SSATN 66
Query: 380 ALQKLQGTAIGKQTVRLSWGR 400
AL+ +QG + +R+ + +
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAK 87
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 10 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 69
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 70 SMQGFPFYDKPMRIQYA 86
>pdb|3N9U|C Chain C, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
pdb|3N9U|I Chain I, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
Length = 156
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+++G W + L G VV +K N+ GQS+GY V S + K+L+
Sbjct: 58 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 117
Query: 176 SYSGSLM--------PNTDQPFRLNWATFSGSDRRTEAC 206
G ++ P T Q N + F R+ E
Sbjct: 118 LLPGKVLNGEKVDVRPATRQ----NLSQFEAQARKRECV 152
>pdb|2KT5|A Chain A, Rrm Domain Of Mrna Export Adaptor Ref2-I Bound To Hsv-1
Icp27 Peptide
Length = 124
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+ V +L V+D+ +QE F+ ++ ++K A V D +GR+ G V F + +AM +
Sbjct: 38 LLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYD-RSGRSLGTADVHFERRADALKAMKQ 95
Query: 271 MNGVYCSSRPMRIDVATPK 289
GV RPM I + +
Sbjct: 96 YKGVPLDGRPMDIQLVASQ 114
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK-----GCGFVQFANSRKD 376
+G A + V LD VSD D++E F++FG + + + G V F R D
Sbjct: 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF-ERRAD 88
Query: 377 AEVALQKLQGTAI 389
A A+++ +G +
Sbjct: 89 ALKAMKQYKGVPL 101
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 211 IFVGDLAPDVTDSILQETFSS----KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
IFV +L D T +L++ F+ Y +K G++KG G V+F R
Sbjct: 8 IFVRNLPFDFTWKMLKDKFNECGHVLYADIK-------MENGKSKGCGVVKFESPEVAER 60
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKASG 293
A MNG+ S R IDV + ASG
Sbjct: 61 ACRMMNGMKLSGR--EIDVRIDRNASG 85
>pdb|2YKA|A Chain A, Rrm Domain Of Mrna Export Adaptor Ref2-I Bound To Hvs
Orf57 Peptide
Length = 124
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+ V +L V+D+ +QE F+ ++ ++K A V D +GR+ G V F + +AM +
Sbjct: 38 LLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYD-RSGRSLGTADVHFERRADALKAMKQ 95
Query: 271 MNGVYCSSRPMRIDVATPK 289
GV RPM I + +
Sbjct: 96 YKGVPLDGRPMDIQLVASQ 114
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK-----GCGFVQFANSRKD 376
+G A + V LD VSD D++E F++FG + + + G V F R D
Sbjct: 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF-ERRAD 88
Query: 377 AEVALQKLQGTAI 389
A A+++ +G +
Sbjct: 89 ALKAMKQYKGVPL 101
>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVA 380
S G S +F+G L + +++++R F Q+G++L I K GFV + + AE A
Sbjct: 2 SSGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIED-KTAAEDA 58
Query: 381 LQKLQ 385
++ L
Sbjct: 59 IRNLH 63
>pdb|2XNQ|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 323 GESNNATIFVGALD-SDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVAL 381
G + +F+G L +VS EDL FS +G I+ + I GF+QF N + +
Sbjct: 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIE 75
Query: 382 QKLQGTAIGKQTV 394
+ Q GK+ +
Sbjct: 76 XESQEMNFGKKLI 88
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
+++ V +L + L+ F KY V + + +T +G+ FVRF D + A
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAE 72
Query: 269 TEMNGVYCSSRPMRIDVA 286
M+G R +R+ VA
Sbjct: 73 AAMDGAELDGRELRVQVA 90
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
SG R + + +F+ L T L+E + +VK +++ + G+ KG +V
Sbjct: 6 SGVFRYSTSLEKHKLFISGLPFSCTKEELEE-ICKAHGTVKDLRLVTN-RAGKPKGLAYV 63
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
+ +E++ S+A+ +M+G+ +++ ++ +SG
Sbjct: 64 EYENESQASQAVMKMDGMTIKENIIKVAISNSGPSSG 100
>pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 211 IFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+ V +L P+ VT L F Y V+ K++ + K V+ D N+ AM+
Sbjct: 6 LLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMS 59
Query: 270 EMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESN--- 326
+NG +P+RI ++ + L G S R + S N
Sbjct: 60 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYG-NSPLHRFKKPGSKNFQNIFP 118
Query: 327 -NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384
+AT+ + + VS+EDL+ FS G ++ KG F Q KD ++AL ++
Sbjct: 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVV-------KGFKFFQ-----KDRKMALIQM 165
>pdb|2XNR|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 323 GESNNATIFVGALD-SDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVAL 381
G + +F+G L +VS EDL FS +G I+ + I GF+QF N + +
Sbjct: 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIE 75
Query: 382 QKLQGTAIGKQTV 394
+ Q GK+ +
Sbjct: 76 CESQEMNFGKKLI 88
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR------ 167
+ +++++G++ + L FS G + + ++ +K +G +GY ++EF R
Sbjct: 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA 94
Query: 168 -AAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR 201
A E V + + ++P R N S +DR
Sbjct: 95 VAMDETVFRGRTIKVLPK-----RTNMPGISSTDR 124
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK---------GCGFVQFANS 373
G S ++ +F+ L+ ++E L+ FS+ G I S I K G GFV++
Sbjct: 1 GSSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60
Query: 374 RKDAEVALQKLQGTAIG--KQTVRLS 397
+ A+ AL++LQG + K VR+S
Sbjct: 61 EQ-AQKALKQLQGHTVDGHKLEVRIS 85
>pdb|1X5P|A Chain A, Solution Structure Of Rrm Domain In Parp14
Length = 97
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 338 DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397
D++ LR FS FG I+ + + + C FV + + A+ A+ +L GT + ++++
Sbjct: 24 DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTY-EKMESADQAVAELNGTQVESVQLKVN 82
Query: 398 WGR 400
R
Sbjct: 83 IAR 85
>pdb|2BZ2|A Chain A, Solution Structure Of Nelf E Rrm
pdb|2JX2|A Chain A, Solution Conformation Of Rna-Bound Nelf-E Rrm
Length = 121
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 338 DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397
D++ LR FS FG I+ + + + C FV + + A+ A+ +L GT + ++++
Sbjct: 48 DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTY-EKMESADQAVAELNGTQVESVQLKVN 106
Query: 398 WGRN 401
R
Sbjct: 107 IARK 110
>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 211 IFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+ V +L P+ VT L F Y V+ K++ + K V+ D N+ AM+
Sbjct: 37 LLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMS 90
Query: 270 EMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESN--- 326
+NG +P+RI ++ + L G S R + S N
Sbjct: 91 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYG-NSPLHRFKKPGSKNFQNIFP 149
Query: 327 -NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384
+AT+ + + VS+EDL+ FS G ++ KG F Q KD ++AL ++
Sbjct: 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVV-------KGFKFFQ-----KDRKMALIQM 196
>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
Length = 96
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 330 IFVGALD-SDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTA 388
+F+G L +VS EDL FS +G I+ + I GF+QF N + + + Q
Sbjct: 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMN 70
Query: 389 IGKQTVRLSWGRNPGNKQWRGDHSNH 414
GK+ + N + GDH +
Sbjct: 71 FGKKLILEVSSSNARPQFDHGDHGTN 96
>pdb|1FJ7|A Chain A, Solution Structure Of Nucleolin Rbd1
Length = 101
Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+E+ + ++F+G+L P+ + + L+ S + K ++D TG + +G+V F
Sbjct: 12 SESTTPFNLFIGNLNPNKSVAELKVAISELF--AKNDLAVVDVRTGTNRKFGYVDFESAE 69
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
+ +A+ E+ G+ ++++ PK G
Sbjct: 70 DLEKAL-ELTGLKVFGNEIKLE--KPKGRDG 97
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E+KT+ + +L + E L F + +KV +N Q G+S+GY F+EF S A++
Sbjct: 14 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEA 69
Query: 174 LQS 176
L S
Sbjct: 70 LNS 72
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
++ + +L+ T+ LQE F K +K + + G++KGY F+ F + A+
Sbjct: 17 TLVLSNLSYSATEETLQEVFE-KATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 71
Query: 270 EMNGVYCSSRPMRIDVATPK 289
N R +R+++ P+
Sbjct: 72 SCNKREIEGRAIRLELQGPR 91
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+G L + + +L+ F P + ++I T +++G+ F+ F + + A +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISE--VLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 271 MNGVYCSSRPMRIDVA-TPKKASG 293
MNG + ++++ A P SG
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSG 91
>pdb|2L41|A Chain A, Nab3 Rrm - Ucuu Complex
Length = 77
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 330 IFVGALD-SDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTA 388
+F+G L +VS EDL FS +G I+ + I GF+QF N + + + Q
Sbjct: 5 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMN 62
Query: 389 IGKQTV 394
GK+ +
Sbjct: 63 FGKKLI 68
>pdb|2CPD|A Chain A, Solution Structure Of The Rna Recognition Motif Of Human
Apobec-1 Complementation Factor, Acf
Length = 99
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 197 SGSDRRTEACSDLSI-FVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYG 254
SGS + S + I +V +L ++ ++++ F++ P +V+ K I D Y
Sbjct: 3 SGSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YA 54
Query: 255 FVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP--KKASG 293
FV F + + AM +NG P+ + +A P K +SG
Sbjct: 55 FVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSSG 95
>pdb|3P5T|L Chain L, Cfim25-Cfim68 Complex
pdb|3P5T|M Chain M, Cfim25-Cfim68 Complex
pdb|3P5T|N Chain N, Cfim25-Cfim68 Complex
pdb|3P5T|O Chain O, Cfim25-Cfim68 Complex
pdb|3P5T|P Chain P, Cfim25-Cfim68 Complex
pdb|3P5T|Q Chain Q, Cfim25-Cfim68 Complex
pdb|3P6Y|C Chain C, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|D Chain D, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|G Chain G, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|H Chain H, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|K Chain K, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|L Chain L, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|O Chain O, Cf Im25-Cf Im68-Uguaa Complex
pdb|3P6Y|P Chain P, Cf Im25-Cf Im68-Uguaa Complex
Length = 90
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
++IG+L W + L G ++ +K N+ GQS+G+ V S A+++K++
Sbjct: 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 62
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+FV +L+ ++ L++ FS+ Y + IDS T + KG+ FV F +A E
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 271 MNGVYCSSRPMRIDVATPKKAS 292
++G R + + +T KK +
Sbjct: 70 VDGQVFQGRMLHVLPSTIKKEA 91
>pdb|1WHY|A Chain A, Solution Structure Of The Rna Recognition Motif From
Hypothetical Rna Binding Protein Bc052180
Length = 97
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 323 GESNNAT-IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVAL 381
G++N T ++VG L + S L F +FG I ++ G ++Q+ S A+ A
Sbjct: 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQY-ESLDAAQAAC 70
Query: 382 QKLQGTAIGKQTVRL 396
K++G +G RL
Sbjct: 71 AKMRGFPLGGPDRRL 85
>pdb|1OPI|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
pdb|2M0G|B Chain B, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 104
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 342 EDLREPFSQFGEILSVKIPVG------KGCG--FVQFANSRKDAEVALQKLQGTAIGKQT 393
ED+R+ S++G + S++IP GCG FV+F S D + A+Q L G +
Sbjct: 29 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEF-TSVFDCQKAMQGLTGRKFANRV 87
Query: 394 V 394
V
Sbjct: 88 V 88
>pdb|1O0P|A Chain A, Solution Structure Of The Third Rna Recognition Motif
(Rrm) Of U2af65 In Complex With An N-Terminal Sf1
Peptide
Length = 104
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 342 EDLREPFSQFGEILSVKIPVG------KGCG--FVQFANSRKDAEVALQKLQGTAIGKQT 393
ED+R+ S++G + S++IP GCG FV+F S D + A+Q L G +
Sbjct: 29 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEF-TSVFDCQKAMQGLTGRKFANRV 87
Query: 394 V 394
V
Sbjct: 88 V 88
>pdb|2E5J|A Chain A, Solution Structure Of Rna Binding Domain In
Methenyltetrahydrofolate Synthetase Domain Containing
Length = 97
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEI---LSVKIPVGKGCGFVQFANSRKDAE 378
+G A ++VG L D DL+ + G + L+ + P + F+ + +S A+
Sbjct: 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRA--FLHYPDSAA-AQ 70
Query: 379 VALQKLQGTAIGKQTVRLSWGRNPGNK 405
A+ LQG +G T+R++ R +K
Sbjct: 71 QAVSCLQGLRLGTDTLRVALARQQRDK 97
>pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 11 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 70
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 71 SMQGFPFYDKPMRIQYA 87
>pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 69
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 70 SMQGFPFYDKPMRIQYA 86
>pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
Length = 90
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 65 SMQGFPFYDKPMRIQYA 81
>pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 69
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 70 SMQGFPFYDKPMRIQYA 86
>pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 6 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 65
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 66 SMQGFPFYDKPMRIQYA 82
>pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 8 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 67
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 68 SMQGFPFYDKPMRIQYA 84
>pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
Length = 94
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 7 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 66
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 67 SMQGFPFYDKPMRIQYA 83
>pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
Length = 97
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 69
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 70 SMQGFPFYDKPMRIQYA 86
>pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+I++ +L + L+++ + + I+ S + + +G FV F + + + A+
Sbjct: 11 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 70
Query: 270 EMNGVYCSSRPMRIDVA 286
M G +PMRI A
Sbjct: 71 SMQGFPFYDKPMRIQYA 87
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
L + FS G+V +V++I ++ + +S+G +VEF
Sbjct: 42 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 74
>pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2
Length = 96
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 152 QTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180
Q G+S+G ++EF S A AEK L+ G+
Sbjct: 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGA 76
>pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 321 SDGESNNA-TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEV 379
S G S N IFVG + + + ++LR F + G + ++ V K FV DA+
Sbjct: 2 SSGSSGNTWKIFVGNVSAACTSQELRSLFERRGRV--IECDVVKDYAFVHM-EKEADAKA 58
Query: 380 ALQKLQGTAI 389
A+ +L G +
Sbjct: 59 AIAQLNGKEV 68
>pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 307 GGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------P 360
G GS+G ++ + + +FVG + + ++DL+ F +FG I + +
Sbjct: 1 GSSGSSGVPMK------DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTG 54
Query: 361 VGKGCGFVQFA--NSRKDAEVALQK 383
+ KGC F+ + +S A+ AL +
Sbjct: 55 LHKGCAFLTYCARDSALKAQSALHE 79
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 513 LLDVYAGPCSQKADTVFRLNWATYLAS 539
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 505 LLDVYAGPCSQKADTVFRLNWATYLAS 531
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 505 LLDVYAGPCSQKADTVFRLNWATYLAS 531
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 505 LLDVYAGPCSQKADTVFRLNWATYLAS 531
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 511 LLDVYAGPCSQKADTVFRLNWATYLAS 537
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 505 LLDVYAGPCSQKADTVFRLNWATYLAS 531
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 513 LLDVYAGPCSQKADTVFRLNWATYLAS 539
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 513 LLDVYAGPCSQKADTVFRLNWATYLAS 539
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 508 LLDVYAGPCSQKADTVFRLNWATYLAS 534
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 505 LLDVYAGPCSQKADTVFRLNWATYLAS 531
>pdb|2M2B|A Chain A, Nmr Structure Of The Rrm2 Domain Of The Protein Rbm10 From
Homo Sapiens
Length = 131
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAE--KVLQS 176
NV+VI++KQT + G+ F++ + AA+ ++LQ+
Sbjct: 54 NVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQA 88
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 543 LLDVYAGPCSQKADTVFRLNWATYLAS 569
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 516 LLDVYAGPCSQKADTVFRLNWATYLAS 542
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 515 LLDVYAGPCSQKADTVFRLNWATYLAS 541
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 510 LLDVYAGPCSQKADTVFRLNWATYLAS 536
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 508 LLDVYAGPCSQKADTVFRLNWATYLAS 534
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 517 LLDVYAGPCSQKADTVFRLNWATYLAS 543
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 506 LLDVYAGPCSQKADTVFRLNWATYLAS 532
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 507 LLDVYAGPCSQKADTVFRLNWATYLAS 533
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGS 199
+L Y+G D FRLNWAT+ S
Sbjct: 505 LLDVYAGPCSQKADTVFRLNWATYLAS 531
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ Y+G D FRLNWAT+ S T++I+ +F +
Sbjct: 507 LIDVYAGPCSQKADAAFRLNWATYLAS---------------------TENIIVASFDGR 545
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
+G K++ N K G + D+ E +R +M V
Sbjct: 546 GSGYQGDKIMHAIN----KRLGTLEVEDQIEAARQFLKMGFV 583
>pdb|1WF2|A Chain A, Solution Structure Of Rrm Domain In Hnrpc Protein
Length = 98
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 197 SGSDRRTEACS-DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255
SGS +T+ S + +F+G+L V E SKY + G V KG+ F
Sbjct: 3 SGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAF 54
Query: 256 VRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
V++ +E A+ +G + + + I++A K
Sbjct: 55 VQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPK 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,877,330
Number of Sequences: 62578
Number of extensions: 483526
Number of successful extensions: 1296
Number of sequences better than 100.0: 217
Number of HSP's better than 100.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 467
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)