BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013061
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 497 bits (1280), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/380 (68%), Positives = 305/380 (80%), Gaps = 14/380 (3%)
Query: 45 WMAMMQYP-AAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQNGGGVKQQQQQQHG---LSN 100
WMA MQYP AAAM MMQQQQM+MYPH Y+PY G PY Q+ Q Q+G
Sbjct: 40 WMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQG--PYQQH-----HPQLHQYGSYQQHQ 92
Query: 101 GKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG 160
+Q+ + + + D+ KT+W+GDL HWMDET+LH+CFSHTG+V +VKVIRNK T QSEGYG
Sbjct: 93 HQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYG 152
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPD 219
FVEF SRAAAE+VLQ+YSGS+MPN+DQPFR+NWA+FS G R E DLS+FVGDL+PD
Sbjct: 153 FVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPD 212
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
VTD +L ETFS +YPSVK AKV+IDSNTGR+KGYGFVRFGDENERSRA+TEMNG YCS+R
Sbjct: 213 VTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNR 272
Query: 280 PMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV 339
MR+ +ATPK+A QQQ+SSQA++LAGG GSNG+ GSQSDGES NATIFVG +D DV
Sbjct: 273 QMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDV 332
Query: 340 SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399
DEDLR+PFSQFGE++SVKIPVGKGCGFVQFA+ RK AE A++ L GT IGK TVRLSWG
Sbjct: 333 IDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFAD-RKSAEDAIESLNGTVIGKNTVRLSWG 391
Query: 400 RNPGNKQWRGDHSNHWNGAH 419
R+P NKQWRGD WNG +
Sbjct: 392 RSP-NKQWRGDSGQQWNGGY 410
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/340 (67%), Positives = 279/340 (82%), Gaps = 2/340 (0%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
++++ KTIWIGDL WMDE++LH+CFS G+V++VK+IRNKQTGQSE YGFVEF + AAA
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAA 138
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EKVLQSY+G++MPNT+QPFRLNWA FS ++R E SD SIFVGDLA DVTD++L++TF+
Sbjct: 139 EKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFA 198
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S+YPS+KGAKV++D+NTG +KGYGFVRFGDE+ERSRAMTEMNGVYCSSR MRI VATPKK
Sbjct: 199 SRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
S + +QYSSQA++L+GG SNGA GSQSDG+S+N TIFVG LDS+V+DE+LR+ F+Q
Sbjct: 259 PSAH-EQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQ 317
Query: 351 FGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGD 410
FGE++SVKIP GKGCGFVQF++ R A+ A+QKL G IGKQ VRLSWGR+P NKQ R D
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSD-RSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTD 376
Query: 411 HSNHWNGAHYGGQGYSGNGYAFPPNQDPNMYAATAVPGAS 450
+ WNG + G Q Y G GY NQD MYA A GAS
Sbjct: 377 SGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGAS 416
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/341 (70%), Positives = 278/341 (81%), Gaps = 14/341 (4%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D+ KT+W+GDL HWMDET+LH CFSHT +V +VKVIRNKQT QSEGYGFVEF SR+AAE+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
LQS+SG MPN +QPFRLNWA+FS G R +E DLSIFVGDLAPDV+D++L ETF+
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
+YPSVKGAKV+IDSNTGR+KGYGFVRFGDENERSRAMTEMNG +CSSR MR+ +ATPK+A
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
+ Y QQ SQAL LAGG G N GS SDGESNN+TIFVG LD+DV++EDL +PFS F
Sbjct: 296 AAYGQQNGSQALTLAGGHGGN-----GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDF 350
Query: 352 GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDH 411
GE++SVKIPVGKGCGFVQFAN R+ AE A+ L GT IGK TVRLSWGR+P NKQWR D
Sbjct: 351 GEVVSVKIPVGKGCGFVQFAN-RQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDS 408
Query: 412 SNHWNGAHYGGQGYSGNGYAFPPNQDPNMY--AATAVPGAS 450
N WNG + GQGY+ NGYA NQD NMY AA AVPGAS
Sbjct: 409 GNQWNGGYSRGQGYN-NGYA---NQDSNMYATAAAAVPGAS 445
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/420 (54%), Positives = 280/420 (66%), Gaps = 48/420 (11%)
Query: 27 SQPTPQQPYHWVPPHQQQWMAMMQYPAAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQNGG 86
+ PTP P HW M+YP + QMM P + PY
Sbjct: 43 TSPTP--PPHW-----------MRYPPTVII---PHQMMYAPPPFPPY------------ 74
Query: 87 GVKQQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS--HTGQVVN 144
Q H L + + + N N E KTIW+GDL HWMDE +L++ F+ ++V+
Sbjct: 75 ---HQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVS 131
Query: 145 VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTE 204
VKVIRNK G SEGYGFVEF S A+KVL+ ++G+ MPNTDQPFRLNWA+FS ++R E
Sbjct: 132 VKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLE 191
Query: 205 AC-SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
DLSIFVGDL+PDV+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENE
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 264 RSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDG 323
R++AMTEMNGV CSSR MRI ATP+K +GYQQQ GG NG ++ +G
Sbjct: 252 RTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ---------GGYMPNGTL---TRPEG 299
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
+ N TIFVG LDS V+DEDL++PF++FGEI+SVKIPVGKGCGFVQF N R +AE AL+K
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVN-RPNAEEALEK 358
Query: 384 LQGTAIGKQTVRLSWGRNPGNKQWRGDHSNHWNGAHYGGQGYSGNGYAFPPNQDPNMYAA 443
L GT IGKQTVRLSWGRNP NKQ R + N W +YGGQ Y+G GY P DP MY A
Sbjct: 359 LNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMV-PQPDPRMYPA 417
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/357 (60%), Positives = 263/357 (73%), Gaps = 17/357 (4%)
Query: 90 QQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS--HTGQVVNVKV 147
Q H + + + N N E KTIW+GDL +WMDE +L++ F+ ++V++KV
Sbjct: 77 HQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKV 136
Query: 148 IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEAC- 206
IRNK G SEGYGFVEF S A+KVLQ ++G+ MPNTDQPFRLNWA+FS ++R E
Sbjct: 137 IRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNG 196
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
DLSIFVGDLAPDV+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENER++
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326
AMTEMNGV CSSR MRI ATP+K +GYQQQ GG +GA ++S+G++
Sbjct: 257 AMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ---------GGYMPSGAF---TRSEGDTI 304
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQG 386
N TIFVG LDS V+DEDL++PFS+FGEI+SVKIPVGKGCGFVQF N R +AE AL+KL G
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVN-RPNAEEALEKLNG 363
Query: 387 TAIGKQTVRLSWGRNPGNKQWRGDHSNHWNGAHYGGQGYSGNGYAFPPNQDPNMYAA 443
T IGKQTVRLSWGRNP NKQ R + N W +YGGQ Y+G GY P DP MY A
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMV-PQPDPRMYPA 419
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 183/335 (54%), Positives = 241/335 (71%), Gaps = 7/335 (2%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T +E +T+WIGDL +W+DE +L +CFS TG++V+VKVIRNK TGQ EGYGF+EF S AAA
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
E+ LQ+Y+G+ MP T+ FRLNWA+F GS ++ +A D SIFVGDLAPDVTD +LQETF
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
Y SV+GAKV+ D +TGR+KGYGFV+F +E+ER+RAM EMNG+YCS+RPMRI ATPKK
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN--NATIFVGALDSDVSDEDLREPF 348
G QQQY ++A+ P + A VQ + ES+ TI V LD +V++E+L++ F
Sbjct: 198 NVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAF 257
Query: 349 SQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWR 408
SQ GE++ VKIP KG G+VQF +R AE A+Q++QG IG+Q VR+SW +NPG W
Sbjct: 258 SQLGEVIYVKIPATKGYGYVQF-KTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWV 316
Query: 409 GD-HSNHWNGAHYGGQGYSGNGYAFPPNQDPNMYA 442
N WNG + GQ + YA+ QDP++YA
Sbjct: 317 TQADPNQWNGYYGYGQ--GYDAYAYGATQDPSVYA 349
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 355 bits (911), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 188/331 (56%), Positives = 232/331 (70%), Gaps = 23/331 (6%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T DE +T+WIGDL +WMDE FL+ CF+HTG++V+ KVIRNKQTGQ EGYGF+EF S AAA
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 171 EKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
E+VLQ+++ + +P+ DQ FRLNWA+ S D+R ++ D +IFVGDLA DVTD IL ETF
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETF 175
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ YPSVKGAKV+ID TGRTKGYGFVRF DE+E+ RAMTEMNGV CS+RPMRI A K
Sbjct: 176 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Query: 290 K-ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348
K +G + Y S A G +D + NN T+FVG LD+ V+D+ L+ F
Sbjct: 236 KGVTGQRDSYQSSA--------------AGVTTDNDPNNTTVFVGGLDASVTDDHLKNVF 281
Query: 349 SQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWR 408
SQ+GEI+ VKIP GK CGFVQF+ + AE AL+ L G +G TVRLSWGR+P NKQ
Sbjct: 282 SQYGEIVHVKIPAGKRCGFVQFSE-KSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ-S 339
Query: 409 GDHSNHWNGAHYGGQGYSGNGYAFPPNQDPN 439
GD S + G + GQG GY P QDPN
Sbjct: 340 GDPSQFYYGGY--GQGQEQYGYTMP--QDPN 366
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 183/353 (51%), Positives = 234/353 (66%), Gaps = 15/353 (4%)
Query: 89 KQQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148
+Q QQQ+G + +E +++WIGDL +WMDE +L CF HTG++V+ KVI
Sbjct: 57 QQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVI 116
Query: 149 RNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD 208
RNKQTGQSEGYGF+EF S AAAE +LQ+Y+G+LMPN +Q FR+NWA+ +RR ++ ++
Sbjct: 117 RNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDS-AE 175
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
+IFVGDLA DVTD ILQETF S Y SV+GAKV+ D TGR+KGYGFV+F DE+E+ RAM
Sbjct: 176 HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAM 235
Query: 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNA 328
TEMNGV CS+RPMRI A KK G Q+ + Q Q +Q + + NN
Sbjct: 236 TEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQ-------------NPQATQGESDPNNT 282
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTA 388
TIFVG LD V++E LR+ FS +GE++ VKI GK CGFVQF +R AE AL L GT
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFG-TRASAEQALSSLNGTQ 341
Query: 389 IGKQTVRLSWGRNPGNKQWRGDHSNHWNGAHYGGQGYSGNGYAFPPNQDPNMY 441
+G Q++RLSWGR+P +KQ GA+YG PP QDPNMY
Sbjct: 342 LGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY 394
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 334 bits (857), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 232/352 (65%), Gaps = 29/352 (8%)
Query: 93 QQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ 152
Q Q+G+ GS N + + K++WIGDL WMDE ++ + F+ +G+ + KVIRNK
Sbjct: 43 QHQYGI------GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKL 96
Query: 153 TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA-CSDLSI 211
TGQSEGYGF+EF S + AE+VLQ+Y+G+ MP+T+Q FRLNWA ++R + D +I
Sbjct: 97 TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
FVGDLAP+VTD +L +TF + Y SVKGAKV++D TGR+KGYGFVRF DENE+ RAMTEM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216
Query: 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIF 331
NG YCS+RPMRI A K A Q + G+N D + NN TIF
Sbjct: 217 NGQYCSTRPMRIGPAANKNA------LPMQPAMYQNTQGANAG-------DNDPNNTTIF 263
Query: 332 VGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGK 391
VG LD++V+D++L+ F QFGE+L VKIP GK CGFVQ+AN + AE AL L GT +G
Sbjct: 264 VGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYAN-KASAEHALSVLNGTQLGG 322
Query: 392 QTVRLSWGRNPGNKQWRGDHSNHWNGAHYGG---QGYSGNGYAF-PPNQDPN 439
Q++RLSWGR+P NKQ WNG Y G Q G GYA PP QDPN
Sbjct: 323 QSIRLSWGRSP-NKQ---SDQAQWNGGGYYGYPPQPQGGYGYAAQPPTQDPN 370
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/328 (52%), Positives = 215/328 (65%), Gaps = 19/328 (5%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E +++WIGDL WMDE +L N F TG+ KVIRNKQ G SEGYGF+EF + A AE+
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
LQ+Y+G+ MP+++Q FRLNWA +RR + ++FVGDLAPDVTD +L ETF + Y
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVY 197
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
SVKGAKV+ D TGR+KGYGFVRF DE+E+ RAMTEMNG YCSSRPMR A KK
Sbjct: 198 SSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLT 257
Query: 294 YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353
Q P S QG+ + + N TIFVGA+D V+++DL+ F QFGE
Sbjct: 258 MQ-------------PASY-QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGE 303
Query: 354 ILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDHSN 413
++ VKIP GK CGFVQ+AN R AE AL L GT +G Q++RLSWGR+P NKQ + D +
Sbjct: 304 LVHVKIPAGKRCGFVQYAN-RACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQ 362
Query: 414 HWNGAHYGGQGYSGN---GYAFPPNQDP 438
+ G Y G G GYA PP QDP
Sbjct: 363 YGGGGGYYGYPPQGYEAYGYA-PPPQDP 389
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 186/309 (60%), Gaps = 11/309 (3%)
Query: 99 SNGKQNGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG 154
S +N SN + DE T+W+G+L W+ E F+ ++ G+ V VK+IRN+ TG
Sbjct: 72 SGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTG 131
Query: 155 QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFV 213
+ GY FVEF S A + S + +P T+ F+LNWA+ G ++ S+ SIFV
Sbjct: 132 MNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFV 190
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
GDL+P+V + + F+S+Y S K AK++ D T ++GYGFVRF DEN++ A+ EM G
Sbjct: 191 GDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Query: 274 VYCSSRPMRIDVATPKKASGYQQQYSSQALV-LAGGPGSNGARVQGSQSDGESNNATIFV 332
C RP+R+ +ATPK + +S +V ++ P + Q ++ N+T+FV
Sbjct: 251 QICGDRPIRVGLATPKSKA---HVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 333 GALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQ 392
G L VS+E+L+ F FGEI+ VKIP GKGCGFVQF N R+ AE+A+ +LQG +G
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVN-RQSAEIAINQLQGYPLGNS 366
Query: 393 TVRLSWGRN 401
+RLSWGRN
Sbjct: 367 RIRLSWGRN 375
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 168/291 (57%), Gaps = 9/291 (3%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEK 172
+ T+W+GDL WMD TF+ ++ + VNVKV+R+K + Y FV+F S AAAE+
Sbjct: 84 SDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAER 143
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFS 230
L Y+ +++P F+LNWAT G D SIFVGDL P DS L TF
Sbjct: 144 ALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFR 203
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S YPS AK+I+D TG ++ YGFVRF E E+ A+ M G C RP+RI VA+PK
Sbjct: 204 SIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKS 263
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
+ + AL + SN Q S + N T+FVG L S++S++DL+ F
Sbjct: 264 RASIA---ADSALGIVPTSTSNRQPNQDLCS-MDPLNTTVFVGGLASNLSEKDLQVCFQP 319
Query: 351 FGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401
FG IL++KIP GKGCGFVQ++ + AE A+ +QG +G +RL+WG N
Sbjct: 320 FGRILNIKIPFGKGCGFVQYSE-KSAAEKAINTMQGALVGTSHIRLAWGHN 369
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 175/336 (52%), Gaps = 60/336 (17%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYS 166
+++GDL D+ + ++ G+ +NV+++ N ++GY FV+F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 167 RAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRR-----TEACSDLSIFVGDLAPDV 220
A L +G L+PN ++ +LNWAT S S+ ++ ++ SIFVGDLAP+V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+S L E F ++Y S AK++ D TG +KGYGFV+F + +E+ A++EM GV+ + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 281 MRIDVATPKKASGYQQQY--------SSQAL--------VLAGGPG--SNGARVQGSQSD 322
+++ SG QQ SS +L L+ G SNG G + +
Sbjct: 235 IKVG-----PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRN 289
Query: 323 GES------------------NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG 364
S NN T+F+G L S V++++LR F FG I+ VKIPVGK
Sbjct: 290 HMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKC 349
Query: 365 CGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
CGFVQ+ + R AE A+ +QG I VRLSWGR
Sbjct: 350 CGFVQYVD-RLSAEAAIAGMQGFPIANSRVRLSWGR 384
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGF 161
+Q S N+FT+ T++IG L + E L F G +V VK+ K GF
Sbjct: 299 QQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC------GF 352
Query: 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193
V++ R +AE + G P + RL+W
Sbjct: 353 VQYVDRLSAEAAIAGMQG--FPIANSRVRLSW 382
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + E+ L F + + K++ ++ TG S+GYGFV+F + + L
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 176 SYSGSLM 182
G +
Sbjct: 224 EMQGVFL 230
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 171/400 (42%), Gaps = 117/400 (29%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-------------------------N 150
+T+W+GDL DE + +S + V VK+IR N
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 151 KQTGQSE----------------------------GYGFVEFYSRAAAEKVLQSYSGSLM 182
+Q+ + GY FVEF ++ A+ L S + + +
Sbjct: 94 QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152
Query: 183 PNTDQP-------------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
PN P FRLNWA+ + + + S+FVGDL+P T++ L F
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLF 212
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+++ SVK +V+ D TG ++ +GFVRFGDE+ER RA+ EM+G + R +R+ ATP+
Sbjct: 213 QTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
Query: 290 -----------------------------------KASGYQQQYSSQAL---VLAGGP-- 309
K + Q +S L L P
Sbjct: 273 NNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPM 332
Query: 310 -----GSNGARVQGSQSDGESN----NATIFVGALDSDVSDEDLREPFSQFGEILSVKIP 360
G + RV S N N T+FVG L ++ LR F FG IL+V+IP
Sbjct: 333 HLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIP 392
Query: 361 VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
GK CGFV+F R DAE ++Q LQG +G +RLSWGR
Sbjct: 393 NGKNCGFVKFE-KRIDAEASIQGLQGFIVGGSPIRLSWGR 431
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 118/187 (63%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P + ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
+FVG L DV D L E F + G+++ + V KG GFV+F + + AL +
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR-ALTE 156
Query: 384 LQGTA-IGKQTVRLS 397
QG +G + VRLS
Sbjct: 157 CQGAVGLGSKPVRLS 171
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 118/187 (63%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G + S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
+FVG L DV D L E F + G+++ + V KG GFV+F + + AL +
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR-ALTE 156
Query: 384 LQGTA-IGKQTVRLS 397
QG +G + VRLS
Sbjct: 157 CQGAIGLGSKPVRLS 171
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 152 bits (383), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+ T+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y + G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYVTY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
+FVG L DV D L E F + G+++ + V KG GFV+F + + AL +
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR-ALTE 156
Query: 384 LQGTA-IGKQTVRLS 397
QG +G + VRLS
Sbjct: 157 CQGAVGLGSKPVRLS 171
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
+FVG L DV D L E F + G+++ + V KG GFV+F + + AL +
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR-ALTE 156
Query: 384 LQGTA-IGKQTVRLS 397
QG +G + VRLS
Sbjct: 157 CQGAVGLGCKPVRLS 171
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANSRKDAEVALQK 383
+FVG L DV D L E F + G+++ V KG GFV+F + + AL +
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKR-ALTE 156
Query: 384 LQGTA-IGKQTVRLS 397
QG +G + VRLS
Sbjct: 157 CQGAVGLGCKPVRLS 171
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 10/185 (5%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ FS G+ VK+I ++ TG S GY FVE A+ ++ +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 176 SYSGSLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+P ++ P F+LN+AT+ +R E + S+FVGDL +V D L + F K+
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKF 123
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPK--K 290
PS KGAKV+ D G ++GYGFV+F DENE+ +A+ E N +P+RI +A K K
Sbjct: 124 PSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNK 182
Query: 291 ASGYQ 295
AS Y
Sbjct: 183 ASTYH 187
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 36/204 (17%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ +++ FS+ + G K+I TG + GY FV DE R +
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 270 EMNG-VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNA 328
+NG + S P P+K ++ Y++ GP
Sbjct: 67 RLNGKLVPGSNP-------PRK---FKLNYATYGKRPEPGP-----------------EF 99
Query: 329 TIFVGALDSDVSDEDLREPF-SQFGEILSVKI---PVG--KGCGFVQFANSRKDAEVALQ 382
++FVG L S+V D L + F +F K+ P G +G GFV+F++ + + AL+
Sbjct: 100 SVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNSRGYGFVKFSDENEQKK-ALE 158
Query: 383 KLQ-GTAIGKQTVRLSWGRNPGNK 405
+ Q + +G + +R+S N GNK
Sbjct: 159 EFQNASGLGGKPIRISIAVNKGNK 182
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 153/305 (50%), Gaps = 38/305 (12%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ + S + +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVAT---PKKASGYQ---QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGAL 335
R + AT P S Y+ +Q S +V P NN T++ G +
Sbjct: 178 RTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSP----------------NNCTVYCGGV 221
Query: 336 DSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395
S ++++ +R+ FS FG+I+ +++ KG FV+F+ S + A A+ + GT I V+
Sbjct: 222 TSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFS-SHESAAHAIVSVNGTTIEGHVVK 280
Query: 396 LSWGR 400
WG+
Sbjct: 281 CYWGK 285
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 162/330 (49%), Gaps = 31/330 (9%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+T+++G+L + E + FS G + K+I + ++ Y FVEFY A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + + ++NWAT + S ++ + + +FVGDL+P++T ++ F+ +
Sbjct: 67 AMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP-FGK 122
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK-ASGY 294
+ A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
Q+ +++ L R + + N T++ G + S ++D+ +R+ FS FG+I
Sbjct: 183 TQENNTKQL-----------RFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231
Query: 355 LSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN---------- 404
+ +++ KG FV+F+ + + A A+ + GT I V+ WG+ +
Sbjct: 232 MEIRVFPEKGYSFVRFS-THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDY 290
Query: 405 KQWRGDHSNHWNGAHYGGQGYSGNGYAFPP 434
QW + N YG Y NG+ PP
Sbjct: 291 SQWGQWSQVYGNPQQYG--QYMANGWQVPP 318
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 151/295 (51%), Gaps = 26/295 (8%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSIL 225
+ +G + + ++NWAT S ++ + S + +FVGDL+P++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R +
Sbjct: 123 KAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLR 345
AT +K + Y S L+ N Q S S N T++ G + S ++++ +R
Sbjct: 182 AT-RKPPAPKSTYESNTKQLSYDEVVN----QSSPS-----NCTVYCGGVTSGLTEQLMR 231
Query: 346 EPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
+ FS FG+I+ +++ KG FV+F NS + A A+ + GT I V+ WG+
Sbjct: 232 QTFSPFGQIMEIRVFPDKGYSFVRF-NSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 36/208 (17%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRT-----------------EACSDLSIFVGDLAPDV 220
G + + R NWAT ++ + S+ +++ G + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG------- 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 274 VYCSSRPMRIDVATP---KKASGYQQQY 298
V C +D+ P + GY Q Y
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQPY 306
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 44/345 (12%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---------------QTGQSEGYG 160
+T+++G+L + E + FS G + K+I + Q ++ Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
FVEFY A L + +G + + ++NWAT + S ++ + + +FVGDL+P++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G + R
Sbjct: 126 TTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 281 MRIDVATPKK-ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV 339
+R + AT K A Q+ +++ L R + + N T++ G + S +
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQL-----------RFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 340 SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399
+D+ +R+ FS FG+I+ +++ KG FV+F+ + + A A+ + GT I V+ WG
Sbjct: 234 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFS-THESAAHAIVSVNGTTIEGHVVKCYWG 292
Query: 400 RNPGN----------KQWRGDHSNHWNGAHYGGQGYSGNGYAFPP 434
+ + QW + N YG Y NG+ PP
Sbjct: 293 KESPDMTKNFQQVDYSQWGQWSQVYGNPQQYG--QYMANGWQVPP 335
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+G+L +MDE F+ F+ G+ VV +++IR+K TG++ GYGFVE A E+ L+
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G +P P R + S ++ E+ S S+FV DL PDV D +L E F + S
Sbjct: 63 KVNGKPLPGATPPKRFKLSR-SNYGKQGES-STFSLFVSDLTPDVDDGMLYEFFHYHFSS 120
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVATPK 289
K+++D+N G +K GFV F E E+ RA+ ++ G + +R+ +A+ +
Sbjct: 121 CCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 35/233 (15%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++G+L P + + + F+ +V ++I D TG+ GYGFV D+ R +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ PK+ + Y Q GES+ +
Sbjct: 63 KVNG-----KPLP-GATPPKRFKLSRSNYGKQ---------------------GESSTFS 95
Query: 330 IFVGALDSDVSDEDLREPFS-QFGEILSVKIPV-----GKGCGFVQFANSRKDAEVALQK 383
+FV L DV D L E F F S KI + K CGFV F + R+ AL
Sbjct: 96 LFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKR-ALVD 154
Query: 384 LQG-TAIGKQTVRLSWGRNPGNKQWRGDHSNHWNGAHYGGQGYSGNGYAFPPN 435
LQG T +GK+ +RLS + NK+ + W N Y +P N
Sbjct: 155 LQGATGLGKKALRLSLASSRVNKKKESSENQIWQYHSDSKNASFINQYYYPQN 207
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 40/213 (18%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+E D +++VG L V++ +L E F P V + D TG+ +GYGFV F E
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEFLSEE 65
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSD 322
+ A+ MN + +P+R++ KAS + +
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN-----KASAHNKNLDV---------------------- 98
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANSRK 375
A IF+G LD ++ ++ L + FS FG IL + KG F+ FA S
Sbjct: 99 ----GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFD 153
Query: 376 DAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWR 408
++ A++ + G + + + +S+ +K R
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 32/300 (10%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH+ FS G +V+ KV + +GQS+GYGFV++ + +A+K ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237
+G L+ N Q + + D +++V +LA TD L+ F +Y +
Sbjct: 185 NGMLL-NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG-EYGKIT 242
Query: 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297
A V++ G++KG+GFV F + ++ +RA+ +NG + + G Q+
Sbjct: 243 SA-VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV---------GRAQK 292
Query: 298 YSSQALVLAGGPGSNGARVQGSQSDGES----NNATIFVGALDSDVSDEDLREPFSQFGE 353
S + L RV+ Q+ E+ ++ ++V LD +SDE L+E FS FG
Sbjct: 293 KSERETEL---------RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT 343
Query: 354 ILSVKI---PVG--KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWR 408
+ S K+ P G KG GFV FA + E A+ +L G I + + ++ + +++ R
Sbjct: 344 VTSSKVMRDPNGTSKGSGFVAFATPEEATE-AMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 136/278 (48%), Gaps = 45/278 (16%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + ++ L + F G VV V+V R+ T +S GYG+V F + A + +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +P +P R+ ++ S RR+ A +IF+ +L + L +TFSS + ++
Sbjct: 97 L--NYIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNI 150
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV +DS +G++KGYGFV++ +E +A+ ++NG+ + + + +
Sbjct: 151 VSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV------------- 196
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNN---ATIFVGALDSDVSDEDLREPFSQFGE 353
G ++ + D +N ++V L +D+DL+ F ++G+
Sbjct: 197 ----------------GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 354 ILSVKIP-----VGKGCGFVQFANSRKDAEVALQKLQG 386
I S + KG GFV F N+ DA A++ L G
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENA-DDAARAVESLNG 277
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 37/190 (19%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL +VTDS L + F + +V +V D T R+ GYG+V F + + +RA+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFG-QMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
E+N + +P+R+ YS + S S
Sbjct: 96 ELNYIPLYGKPIRV-------------MYSHR-----------------DPSVRRSGAGN 125
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV-----GKGCGFVQFANSRKDAEVALQKL 384
IF+ LD + + L + FS FG I+S K+ V KG GFVQ+AN + A+ A++KL
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYAN-EESAQKAIEKL 184
Query: 385 QGTAIGKQTV 394
G + + V
Sbjct: 185 NGMLLNDKQV 194
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 19/198 (9%)
Query: 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVE 163
+ FTN +++ +L + L N F G++ + V+++ + G+S+G+GFV
Sbjct: 208 TANKTKFTN-----VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVN 261
Query: 164 FYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIF 212
F + A + ++S Y G +++ L + +++
Sbjct: 262 FENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLY 321
Query: 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272
V +L P ++D L+E FS + +V +KV+ D N G +KG GFV F E + AM++++
Sbjct: 322 VKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLS 379
Query: 273 GVYCSSRPMRIDVATPKK 290
G S+P+ + +A K+
Sbjct: 380 GKMIESKPLYVAIAQRKE 397
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVA 380
N +++VG LD +V+D L + F Q G +++V++ G G+V F N +DA A
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNP-QDAARA 93
Query: 381 LQKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+Q+L + + +R+ + R+P ++
Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDPSVRR 120
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 40/213 (18%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+E D +++VG L V++ +L E F P V + D TG+ +GYGFV F E
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEFLSEE 65
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSD 322
+ A+ MN + +P+R++ KAS + +
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN-----KASAHNKNLDV---------------------- 98
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANSRK 375
A IF+G LD ++ ++ L + FS FG IL + KG F+ FA S
Sbjct: 99 ----GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFD 153
Query: 376 DAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWR 408
++ A++ + G + + + +S+ +K R
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 40/213 (18%)
Query: 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262
+E D +++VG L V++ +L E F P V + D TG+ +GYGFV F E
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVEFLSEE 65
Query: 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSD 322
+ A+ MN + +P+R++ KAS + +
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVN-----KASAHNKNLDV---------------------- 98
Query: 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANSRK 375
A IF+G LD ++ ++ L + FS FG IL + KG F+ FA S
Sbjct: 99 ----GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFD 153
Query: 376 DAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWR 408
++ A++ + G + + + +S+ +K R
Sbjct: 154 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 141/283 (49%), Gaps = 38/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ ++F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGY FV F + +A+ +MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKSRKEREA 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ ++A E N +++ +V DE L+E FSQFG+ LS
Sbjct: 182 ELGAKA--------------------KEFTN--VYIKNFGEEVDDESLKELFSQFGKTLS 219
Query: 357 VKI---PVG--KGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
VK+ P G KG GFV + +DA A++++ G I + +
Sbjct: 220 VKVMRDPNGKSKGFGFVSY-EKHEDANKAVEEMNGKEISGKII 261
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 148/300 (49%), Gaps = 29/300 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L++ FS G +++ KV+ ++ S+GY FV F ++ AA+K ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ +A ++++ + +V D L+E FS ++
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QFGK 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
KV+ D N G++KG+GFV + + ++A+ EMNG S + + + A K +
Sbjct: 217 TLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + L +R QG +++ LD + DE LR+ FS FG I
Sbjct: 276 LKRKFEQL-----KQERISRYQG---------VNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDH 411
S K+ + KG GFV F+ S ++A A+ ++ G +G + + ++ + K+ R H
Sbjct: 322 SAKVMLEDGRSKGFGFVCFS-SPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAH 377
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + +D+ L FS G+ ++VKV+R+ G+S+G+GFV +
Sbjct: 188 KEFTN-----VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKH 241
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A K ++ + G ++ L R +++++ +L
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDTIDDEKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 359 GSKPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L SDV++ L E FS G +LS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + +R+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRK 95
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 139/283 (49%), Gaps = 37/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L++ FS G + +++V R+ T S GY +V + A +K +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ + + +P R+ W+ + R+ + +IF+ +L P + + L ETFS+ + V
Sbjct: 111 LNYAEI--NGRPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETFST-FGEV 164
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV +D N G ++G+GFV F +E++ A+ +NG+ + + + + PKK
Sbjct: 165 LSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK------ 217
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
R+ + ++N I+V +D + +DE+ + FSQ+GEI+S
Sbjct: 218 -----------------DRI-SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVS 259
Query: 357 VKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
+ KG GFV F + A+ A+++L G Q +
Sbjct: 260 AALEKDAEGKPKGFGFVNFVDHNAAAK-AVEELNGKEFKSQAL 301
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 27/282 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH FS G+V++ KV + + G S G+GFV F + A+ +++
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS-IFVGDLAPDVTDSILQETFSSKYPSV 236
+G LM + ++ + EA ++ + I+V ++ + TD ++ FS +Y +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFS-QYGEI 257
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KASGY 294
A + D+ G+ KG+GFV F D N ++A+ E+NG S+ + + A K +A
Sbjct: 258 VSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEEL 316
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
++QY L A+ QG +F+ LD + DE L+E F+ +G I
Sbjct: 317 KKQYEQYRL-------EKLAKFQG---------VNLFIKNLDDSIDDEKLKEEFAPYGTI 360
Query: 355 LSVKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGK 391
S ++ KG GFV F++ + + +K Q GK
Sbjct: 361 TSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGK 402
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN K I + DE F FS G++V+ + ++ + G+ +G+GFV F
Sbjct: 229 NFTNIYVKNIDV----ETTDEEF-EQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHN 282
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL------------------S 210
AA K ++ +G + F+ + ++ E +L +
Sbjct: 283 AAAKAVEELNG-------KEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVN 335
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+ +L + D L+E F+ Y ++ A+V+ D G +KG+GFV F E ++AMTE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAP-YGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTE 393
Query: 271 MNGVYCSSRPMRIDVATPK 289
N + +P+ + +A K
Sbjct: 394 KNQQIVAGKPLYVAIAQRK 412
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDA 377
E+NNA+++VG LD ++++ L + FS G I S+++ G +V + +
Sbjct: 46 ENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEA-G 104
Query: 378 EVALQKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ A+Q+L I + R+ W R+P ++
Sbjct: 105 KKAIQELNYAEINGRPCRIMWSERDPAIRK 134
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L+E F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAI-GKQT 393
VK+ KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 220 VKVMTDESGKSKGFGFVSF-ERHEDAQKAVDEMNGKELNGKQI 261
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 26/295 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRK---FEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L+E F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAI-GKQT 393
VK+ KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 220 VKVMTDESGKSKGFGFVSF-ERHEDAQKAVDEMNGKELNGKQI 261
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 143/295 (48%), Gaps = 26/295 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRK---FEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L++ F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAI-GKQT 393
VK+ KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 220 VKVMTDESGKSKGFGFVSF-ERHEDAQKAVDEMNGKELNGKQI 261
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 143/295 (48%), Gaps = 26/295 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRK---FEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 142/283 (50%), Gaps = 39/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L++ F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAI-GKQT 393
VK+ KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 220 VKVMTDESGKSKGFGFVSF-ERHEDAQKAVDEMNGKELNGKQI 261
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 143/295 (48%), Gaps = 26/295 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRK---FEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 137/277 (49%), Gaps = 37/277 (13%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
+ ++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + +L+ +P R+ W+ + R+T A +IF+ +L + + L +TF++ +
Sbjct: 119 EELNYTLI--KGRPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTFAA-FG 172
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294
++ KV D + G +KGYGFV + + S+A+ +NG+ + + + + PKK
Sbjct: 173 NILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR-- 229
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
Q + ++N ++V ++++V+DE+ RE F++FGE+
Sbjct: 230 ----------------------QSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEV 267
Query: 355 LSVKIP-----VGKGCGFVQFANSRKDAEVALQKLQG 386
S + +G GFV F A+ A+ +L G
Sbjct: 268 TSSSLARDQEGKSRGFGFVNFTTHEAAAQ-AVDELNG 303
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 58/245 (23%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN +++ ++ + + + F+ G+V + + R+ Q G+S G+GFV F +
Sbjct: 239 NFTN-----VYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHE 292
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
AA + + Y G ++ L + + + +++++ +L
Sbjct: 293 AAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLG 352
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDS-------------------------------- 245
DV D L+ FS +Y + AKV+ DS
Sbjct: 353 DDVDDDKLRAMFS-EYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEK 411
Query: 246 --------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297
G++KG+GFV F + ++ ++A+TEMN +P+ + +A K Q +
Sbjct: 412 KTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLE 471
Query: 298 YSSQA 302
S QA
Sbjct: 472 ASIQA 476
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKI---PVGK---GCGFVQFANSRKDAEVA 380
+A+++VG LD V++ L E FSQ G + S+++ V + G +V + N+ D E A
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNY-NTTADGEKA 117
Query: 381 LQKLQGTAIGKQTVRLSWG-RNPGNKQ 406
L++L T I + R+ W R+P ++
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRK 144
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 139/275 (50%), Gaps = 38/275 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGRPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D++DE L+E F ++G LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQG 386
VK+ KG GFV F +DA+ A+ ++ G
Sbjct: 220 VKVMTDDNGKSKGFGFVSF-ERHEDAQKAVDEMNG 253
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 152/338 (44%), Gaps = 30/338 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F KY
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KYGP 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
KV+ D N G++KG+GFV F + +A+ EMNG + + M + A K +
Sbjct: 217 ALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ F FG I
Sbjct: 276 LKRKFEQM-----KQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFLPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDH 411
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q +
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380
Query: 412 SNHWNGAHYGGQGYSGNGYAFPPNQDPNMYAATAVPGA 449
A N Y PP+ Y A+P A
Sbjct: 381 QYMQRMASVRVPNPVINPYQPPPSS----YFMAAIPPA 414
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 36/189 (19%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DVT+++L E FS P + +V D T R+ GY +V F + RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
MN RP+RI +S Q S +S
Sbjct: 71 TMNFDVIKGRPVRI-------------MWS-----------------QRDPSLRKSGVGN 100
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANSRKDAEVALQKLQ 385
IF+ LD + ++ L + FS FG ILS K+ KG GFV F +++ AE A+ K+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHF-ETQEAAERAIDKMN 159
Query: 386 GTAIGKQTV 394
G + + V
Sbjct: 160 GMLLNDRKV 168
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + M++ L F G ++VKV+ + G+S+G+GFV F
Sbjct: 190 FTN-----VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHED 243
Query: 170 AEKVLQSYSGSLM-----------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + +G M ++ L R ++++V +L
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ F + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG ++
Sbjct: 304 GIDDERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 279 RPMRIDVATPKK 290
+P+ + +A K+
Sbjct: 361 KPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGRPVRIMWSQRDPSLRK 95
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 141/283 (49%), Gaps = 39/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L++ F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAI-GKQT 393
VK+ KG GFV F +DA+ A+ ++ G + GKQ
Sbjct: 220 VKVMTDESGKSKGFGFVSF-ERHEDAQKAVDEMNGKELNGKQI 261
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 143/295 (48%), Gaps = 26/295 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRK---FEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L D ++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 39/300 (13%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
S NN + ++++G+L + E L+ FS GQV +++V R+ T +S GY +V +
Sbjct: 41 SPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 100
Query: 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL 225
+ A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L
Sbjct: 101 NTADGERALEDLNYTLI--KGKPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKAL 155
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + +
Sbjct: 156 HDTFAA-FGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 213
Query: 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLR 345
KK Q + ++N I++ +D DV++E+ R
Sbjct: 214 HISKKDR------------------------QSKFDEMKANFTNIYIKNIDPDVTEEEFR 249
Query: 346 EPFSQFGEILSVKI---PVGK--GCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
+ F QFGEI S + P GK G GFV ++ + + A+ A+ ++ + +T +L GR
Sbjct: 250 KIFEQFGEITSATLSRDPEGKSRGFGFVNYS-THESAQAAVDEMHDKEV--KTQKLYVGR 306
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 120/248 (48%), Gaps = 28/248 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S DR+++ + +I++ ++ PDVT+ ++ F ++
Sbjct: 200 NGMLL-NDKKVFVGHH--ISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFE-QF 255
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KA 291
+ A + D G+++G+GFV + A+ EM+ ++ + + A K +
Sbjct: 256 GEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHERE 314
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
++QY + L ++ QG ++V L DV DE LRE F +
Sbjct: 315 EELRKQYEAARL-------EKASKYQG---------VNLYVKNLTDDVDDEKLRELFGPY 358
Query: 352 GEILSVKI 359
G I S K+
Sbjct: 359 GTITSAKV 366
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 70/257 (27%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN I+I ++ + E F G++ + + R+ + G+S G+GFV + +
Sbjct: 230 NFTN-----IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHE 283
Query: 169 AAE-----------KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
+A+ K + Y G ++ L + + ++++V +L
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN------------------------------- 246
DV D L+E F Y ++ AKV+ DS
Sbjct: 344 DDVDDEKLRELFGP-YGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAE 402
Query: 247 ---------------------TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
G++KG+GFV F +E S+A+TEMN + +P+ + +
Sbjct: 403 EKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 462
Query: 286 ATPKKASGYQQQYSSQA 302
A K Q + S QA
Sbjct: 463 AQRKDVRRSQLEASIQA 479
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 140/283 (49%), Gaps = 38/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L+E F Q+G LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKEWFGQYGAALS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
VK+ +G GFV F +DA+ A+ + G + + +
Sbjct: 220 VKVMTDDHGKSRGFGFVSF-ERHEDAQKAVDDMNGKDLNGKAI 261
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 154/338 (45%), Gaps = 30/338 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F +Y +
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFG-QYGA 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
KV+ D + G+++G+GFV F + +A+ +MNG + + + + A K +
Sbjct: 217 ALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ F+ FG I
Sbjct: 276 LKRKFEQM-----KQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFTPFGSIT 321
Query: 356 SVKIPV----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDH 411
S K+ + KG GFV F+ S ++A A+ ++ G + + + ++ + +Q +
Sbjct: 322 SAKVMMEGGRSKGFGFVCFS-SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380
Query: 412 SNHWNGAHYGGQGYSGNGYAFPPNQDPNMYAATAVPGA 449
A N Y PP+ Y A+P A
Sbjct: 381 QYMQRMASVRVPNPVINPYQPPPSS----YFMAAIPPA 414
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + G+S G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERH 241
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + + G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ F+ + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G ILS+++ G +V F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + VR+ W R+P ++
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 37/280 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL ++E+ L + FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ L+ N +P R+ W+ S RR+ ++F+ +L + + + +TFS+ + ++
Sbjct: 63 MNFDLVRN--KPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV D G +KGYGFV F E + ++ ++NG+ + + + + P+K ++
Sbjct: 117 LSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER--EK 173
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + ++V D DE L+E F +G+I S
Sbjct: 174 ELGEKAKLFTN----------------------VYVKNFTEDFDDEKLKEFFEPYGKITS 211
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGK 391
K+ KG GFV F + + AE A+Q L G +G+
Sbjct: 212 YKVMSKEDGKSKGFGFVAFETT-EAAEAAVQALNGKDMGE 250
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN +++ + D+ L F G++ + KV+ +K+ G+S+G+GFV F + A
Sbjct: 182 FTN-----VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEA 235
Query: 170 AEKVLQSYSGSLM------------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
AE +Q+ +G M ++ L +R E+ ++++V +L
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLD 295
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
+ D L+ FS Y ++ AKV+ D GR+KG+GFV F +E + A+TE+NG
Sbjct: 296 DTIDDDRLRIAFSP-YGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVG 353
Query: 278 SRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 354 SKPLYVALAQRKE 366
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S++VGDL DV +S L + FSS P V +V D T R+ GY +V F + RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGP-VLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
MN ++P+RI +S Q S S
Sbjct: 62 TMNFDLVRNKPIRI-------------MWS-----------------QRDPSLRRSGVGN 91
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV-----GKGCGFVQFANSRKDAEVALQKL 384
+F+ LD + ++ + + FS FG ILS K+ KG GFV F + + A ++ K+
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHF-ETEEAANTSIDKV 150
Query: 385 QGTAIGKQTV 394
G + + V
Sbjct: 151 NGMLLNGKKV 160
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L + FS G +LS+++ G +V F DAE AL
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQP-ADAERAL 60
Query: 382 QKLQGTAIGKQTVRLSWG-RNP 402
+ + + +R+ W R+P
Sbjct: 61 DTMNFDLVRNKPIRIMWSQRDP 82
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 155/321 (48%), Gaps = 39/321 (12%)
Query: 93 QQQHGLS-NGKQNGSNN-NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN 150
+Q LS KQ G+N N + + ++++GDL + E L++ FS G V +++V R+
Sbjct: 10 EQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRD 69
Query: 151 KQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS 210
T S GY +V F AA+ ++ + P + R+ W+ S R+ A +
Sbjct: 70 AITKTSLGYAYVNFNDHDAAKTAIEKL--NFTPIKGKLCRIMWSQRDPSLRKKGAG---N 124
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
IF+ +L PD+ + L +TFS + ++ +KV D TG++KG+G+V F ++ S A+
Sbjct: 125 IFIKNLHPDIDNKALYDTFSV-FGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDA 182
Query: 271 MNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATI 330
+NG+ + + + + GP + + + ++N +
Sbjct: 183 LNGMLLNGQEIYV------------------------GPHLSKKERESKFEEMKANFTNV 218
Query: 331 FVGALDSDVSDEDLREPFSQFGEILSV---KIPVG--KGCGFVQFANSRKDAEVALQKLQ 385
++ ++++ +D++ E ++FG+ SV + P G KG GFV F N +DA +++L
Sbjct: 219 YIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVN-HEDAVKCVEELN 277
Query: 386 GTAIGKQTVRLSWGRNPGNKQ 406
T Q + ++ + +Q
Sbjct: 278 NTEFKGQPLYVNRAQKKYERQ 298
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 130/284 (45%), Gaps = 31/284 (10%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV + +TG+S+G+G+V F +A + + +
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS-IFVGDLAPDVTDSILQETFSS--KYP 234
+G L+ + + + + E ++ + +++ ++ + TD +E + K
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTD 243
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KAS 292
SV V+ + G KG+GFV F + + + + E+N +P+ ++ A K +
Sbjct: 244 SV----VLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQ 299
Query: 293 GYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG 352
++QY + + A+ QG +F+ LD + D+ L E F+ +G
Sbjct: 300 ELKKQYEATRM-------EKMAKYQG---------INLFIKNLDDSIDDKKLEEEFAPYG 343
Query: 353 EILSVKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGK 391
I S K+ KG GFV F+ + + +K Q GK
Sbjct: 344 TITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN ++I ++ + + G+ +V V+ G+++G+GFV F +
Sbjct: 214 NFTN-----VYIKNINTETTDKEFEELVAKFGKTDSV-VLERTPEGENKGFGFVNFVNHE 267
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--------------LSIFVG 214
A K ++ + + QP +N A +R+ E +++F+
Sbjct: 268 DAVKCVEELNNTEFKG--QPLYVNRAQ-KKYERQQELKKQYEATRMEKMAKYQGINLFIK 324
Query: 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
+L + D L+E F+ Y ++ AKV+ N G++KG+GFV F E ++A+TE N
Sbjct: 325 NLDDSIDDKKLEEEFAP-YGTITSAKVMTTEN-GKSKGFGFVCFSTPEEATKAITEKNQQ 382
Query: 275 YCSSRPMRIDVATPK 289
+ +P+ + +A K
Sbjct: 383 IVAGKPLYVAIAQRK 397
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 319 SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFAN 372
++ E+ +A+++VG LD VS+ L + FS G + S+++ G +V F N
Sbjct: 26 EENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF-N 84
Query: 373 SRKDAEVALQKLQGTAIGKQTVRLSWG-RNP-------GNKQWRGDHSNHWNGAHYGGQG 424
A+ A++KL T I + R+ W R+P GN + H + N A Y
Sbjct: 85 DHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFS 144
Query: 425 YSGN 428
GN
Sbjct: 145 VFGN 148
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 140/283 (49%), Gaps = 38/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ ++F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVI--KGRPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D + R GYGFV F + +RA+ MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKSRREREL 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+Y GA+V E N +++ D+ D+ LRE FS FG LS
Sbjct: 182 EY--------------GAKVM------EFTN--VYIKNFGEDMDDKRLREIFSAFGNTLS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
VK+ + +G GFV + N ++A+ A+ ++ G + + +
Sbjct: 220 VKVMMDDTGRSRGFGFVNYGN-HEEAQKAVSEMNGKEVNGRMI 261
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 22/214 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + MD+ L FS G ++VKV+ + TG+S G+GFV + +
Sbjct: 190 FTN-----VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEE 243
Query: 170 AEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + Y G ++ L R ++++V +L
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ FS Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S+
Sbjct: 304 GIDDDRLRKEFSP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 279 RPMRIDVATPK--KASGYQQQYSSQALVLAGGPG 310
+P+ + +A K + + QY + + PG
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPG 394
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFANSRKDAEVAL 381
A+++VG L DV++ L E FS G I+S+++ G ++ F DAE AL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + +R+ W R+PG ++
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGLRK 95
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 154/300 (51%), Gaps = 34/300 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L+ FS G +++ KV + G+S+GYGFV+F A+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 178 SGSLMPNTDQPFRLNWATFSGSDR-RTEA---CSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N Q F ++ DR R+E+ S +++V +L ++TD L++TF KY
Sbjct: 207 NGMLL-NDKQVFVGHFVR--RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG-KY 262
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KA 291
+ A V++ +G ++ +GFV F + A+ +MNG+ + + A K +
Sbjct: 263 GDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 321
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
++++ + + S ++QGS +++ LD V+DE L+E FS++
Sbjct: 322 EELRRKFEQERI-------SRFEKLQGS---------NLYLKNLDDSVNDEKLKEMFSEY 365
Query: 352 GEILSVKIP-----VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406
G + S K+ + +G GFV ++N ++A +A++++ G IG++ + ++ + +Q
Sbjct: 366 GNVTSCKVMMNSQGLSRGFGFVAYSNP-EEALLAMKEMNGKMIGRKPLYVALAQRKEERQ 424
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 141/283 (49%), Gaps = 38/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL ++E+ L + F+ V N++V R+ T +S GY +V F + A + ++S
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 118
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ + P D+P R+ S D T ++F+ +L + + L ETFSS + ++
Sbjct: 119 LNYA--PIRDRPIRI---MLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSS-FGTI 172
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV +D GR+KGYGFV+F E A+ ++NG+ + + + + G+
Sbjct: 173 LSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV---------GHFV 222
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A S+S + ++V L +++D++L++ F ++G+I S
Sbjct: 223 RRQDRA---------------RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 267
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
+ + GFV F S + A VA++K+ G ++G+ +
Sbjct: 268 AVVMKDQSGNSRSFGFVNFV-SPEAAAVAVEKMNGISLGEDVL 309
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 19/199 (9%)
Query: 103 QNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV 162
++G+ +FTN +++ +L + + L F G + + V+++ Q+G S +GFV
Sbjct: 231 ESGAVPSFTN-----VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFV 284
Query: 163 EFYSRAAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSI 211
F S AA ++ Y G +D+ L R E ++
Sbjct: 285 NFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNL 344
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
++ +L V D L+E FS +Y +V KV+++S G ++G+GFV + + E AM EM
Sbjct: 345 YLKNLDDSVNDEKLKEMFS-EYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 272 NGVYCSSRPMRIDVATPKK 290
NG +P+ + +A K+
Sbjct: 403 NGKMIGRKPLYVALAQRKE 421
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIP-----VGKGCGFVQFANSRKDAEVAL 381
N++++VG LD V++ L + F+Q + ++++ G +V FAN +DA A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANP-EDASRAM 116
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNK 405
+ L I + +R+ R+P +
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTR 141
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 143/297 (48%), Gaps = 39/297 (13%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
N + + ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 101
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQET 228
E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +T
Sbjct: 102 DGERALEDLNYTLI--KGKPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDT 156
Query: 229 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
F++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + +
Sbjct: 157 FAA-FGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 214
Query: 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348
KK Q + ++N +++ +D DV++E+ RE F
Sbjct: 215 KKDR------------------------QSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 349 SQFGEILSVKIP-----VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
+FGEI S + +G GFV F+ + + A+ A+ ++ I +T +L GR
Sbjct: 251 EKFGEITSATLSRDQEGKSRGFGFVNFS-THESAQAAVDEMNEKEI--RTQKLYVGR 304
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 28/267 (10%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S DR+++ + ++++ ++ DVT+ +E F K+
Sbjct: 198 NGMLL-NDKKVFVGHH--ISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFE-KF 253
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KA 291
+ A + D G+++G+GFV F A+ EMN ++ + + A K +
Sbjct: 254 GEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHERE 312
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
++QY + L A ++ QG ++V L DV DE LRE F +
Sbjct: 313 EELRKQYEAARLEKA-------SKYQG---------VNLYVKNLTDDVDDEKLRELFGPY 356
Query: 352 GEILSVKIPVGKGCGFVQFANSRKDAE 378
G I S K+ Q S K+ E
Sbjct: 357 GTITSAKVMRDTNIERTQTPESDKEKE 383
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKI---PVGK---GCGFVQFANSRKDAEV 379
++A+++VG LD V++ L E FS G++ S+++ V + G +V + N+ D E
Sbjct: 47 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT-ADGER 105
Query: 380 ALQKLQGTAIGKQTVRLSWG-RNP 402
AL+ L T I + R+ W R+P
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDP 129
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 248 GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQA 302
G++KG+GFV F +E S+A+TEMN + +P+ + +A K Q + S QA
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQA 484
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 134/274 (48%), Gaps = 38/274 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++
Sbjct: 122 LNYTLI--KGRPCRIMWSQRDPALRKT---GQGNVFIKNLDVAIDNKALHDTFAA-FGNI 175
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV D N G +KGYGFV + + S+A+ +NG+ + + + + PKK
Sbjct: 176 LSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR---- 230
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
Q + ++N I+V ++ +V+D++ R F ++G++ S
Sbjct: 231 --------------------QSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTS 270
Query: 357 VKIP------VGKGCGFVQFANSRKDAEVALQKL 384
+ +G GFV F S +DA A+Q+L
Sbjct: 271 SSLARDQETGKSRGFGFVNFT-SHEDASKAVQEL 303
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 41/255 (16%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA + ++
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 178 SGSLM-----------PNTDQPFRLNW--ATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
+G L+ P D+ + + A F+ +I+V ++ P+VTD
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFT------------NIYVKNINPEVTDDE 257
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
+ F KY V + + D TG+++G+GFV F + S+A+ E+N + + +
Sbjct: 258 FRTLFE-KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVG 316
Query: 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDL 344
A K + + S +A ++ QG +++ LD +V DE L
Sbjct: 317 RAQKKHEREEELRKSYEA-----ARQEKASKYQG---------VNLYIKNLDDEVDDEKL 362
Query: 345 REPFSQFGEILSVKI 359
R+ FS+FG I S K+
Sbjct: 363 RQLFSEFGPITSAKV 377
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 101/251 (40%), Gaps = 63/251 (25%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN I++ ++ + + F G V + + R+++TG+S G+GFV F S
Sbjct: 240 NFTN-----IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
A K +Q Y G ++ L + + + +++++ +L
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLD 354
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNT------------------------------ 247
+V D L++ FS P + AKV+ DS T
Sbjct: 355 DEVDDEKLRQLFSEFGP-ITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDS 413
Query: 248 ----------------GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
G++KG+GFV F + ++ ++A+ EMN +++P+ + +A K
Sbjct: 414 KPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDV 473
Query: 292 SGYQQQYSSQA 302
Q + S QA
Sbjct: 474 RKNQLEQSIQA 484
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKI---PVGK---GCGFVQFANSRKDAEVA 380
+A+++VG LD V++ L E FSQ G + S+++ V + G +V + N+ D E A
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNY-NTTADGEKA 118
Query: 381 LQKLQGTAIGKQTVRLSWG-RNPGNKQ 406
L++L T I + R+ W R+P ++
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRK 145
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 41/285 (14%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + E L++ F+ + +V++ ++ +G+S YG+ F SR A +
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + SL+ + R+ W+ + RR ++FV +L VT+++LQ+ F K+
Sbjct: 83 EKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMF-KKFG 136
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294
++ KV + G+++GYGFV+F E+ A+ +N + + + +
Sbjct: 137 NIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV----------- 184
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
G RV+ E +++ LD+DVS++ LRE F++FG+I
Sbjct: 185 ------------GKFMKKTDRVK-----PEEKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Query: 355 LSVKIP-----VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
+S+ I + +G FV F N +DA A + + GT G + +
Sbjct: 228 VSLAIAKDENRLCRGYAFVNFDNP-EDARRAAETVNGTKFGSKCL 271
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 39/266 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L + L + F G +V+ KV + G+S GYGFV+F AA +Q+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 178 SGSLMPNTDQPFRLNWATF-SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +++ + + + F +DR ++++ +L DV++ +L+E F+ ++ +
Sbjct: 173 NSTIVADKE----IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFA-EFGKI 227
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA----- 291
+ D N +GY FV F + + RA +NG S+ + + A K
Sbjct: 228 VSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLL 286
Query: 292 -SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
+++++ Q ++ A+V + I+V ++ V++E+LR+ FSQ
Sbjct: 287 REQFKEKHEEQKMI---------AKV-----------SNIYVKNVNVAVTEEELRKHFSQ 326
Query: 351 FGEILSVKIPV-----GKGCGFVQFA 371
G I S K+ KG GFV F+
Sbjct: 327 CGTITSTKLMCDEKGKSKGFGFVCFS 352
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY----SRAAAEKV 173
+++ +L + E L F+ G++V++ + ++ + GY FV F +R AAE V
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 174 LQSYSGSLM---------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
+ GS +Q R + + S+ I+V ++ VT+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN--IYVKNVNVAVTEEE 319
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L++ FS + ++ K++ D G++KG+GFV F E A+ +G +P+ +
Sbjct: 320 LRKHFS-QCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
Query: 285 VATPKKASGYQQQ 297
+A K+ Q Q
Sbjct: 378 IAQKKEDRKMQLQ 390
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG-----C-GFVQFANSRKDAEVAL 381
A+++VG L V++ L + F++F + SV++ C G+ F SR+DA +A+
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFL-SRQDANLAI 82
Query: 382 QKLQGTAIGKQTVRLSWG 399
+K + + + +R+ W
Sbjct: 83 EKKNNSLLNGKMIRVMWS 100
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 155/342 (45%), Gaps = 50/342 (14%)
Query: 98 LSNGKQNGSNNNFTNDETKT-IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQS 156
+SNG ++ + +D +T + + L M + L + FS G+V + K+IR+K G S
Sbjct: 1 MSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 157 EGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVG 214
GYGFV + + AE+ + + +G RL T S R +E D ++++
Sbjct: 61 LGYGFVNYVTAKDAERAISTLNG---------LRLQSKTIKVSYARPSSEVIKDANLYIS 111
Query: 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
L +T +++ F S++ + ++V++D TG ++G F+RF +E A+T NG
Sbjct: 112 GLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGH 170
Query: 275 YC--SSRPMRIDVAT----PKKASGYQQQYSSQALVLAGGP------------------- 309
SS P+ + A K + Q Y S A GGP
Sbjct: 171 KPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRF-GGPVHHQAQRFRFSPMGVDHMS 229
Query: 310 GSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------K 363
G +G V G+ S G IF+ L D + L + F FG + +VK+ K
Sbjct: 230 GISGVNVPGNASSG----WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 364 GCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405
G GFV N ++A +A+ L G +G + +++S+ N +K
Sbjct: 286 GFGFVTMTNY-EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 140/289 (48%), Gaps = 39/289 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A E+ L+
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +L+ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++
Sbjct: 115 LNYTLI--KGKPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDTFAA-FGNI 168
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV D G +KGYGFV + + A+ +NG+ + + + + KK
Sbjct: 169 LSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR---- 223
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
Q + ++N +++ LDS++ D++ R+ F +FGEI S
Sbjct: 224 --------------------QSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITS 263
Query: 357 VKIP-----VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400
+ +G GFV F+ + + A+ A++++ I Q +L GR
Sbjct: 264 ATLSRDQEGKSRGFGFVNFS-THESAQAAVEEMNDKEIRSQ--KLYVGR 309
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 119/248 (47%), Gaps = 28/248 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S DR+++ + ++++ +L ++ D ++ F K+
Sbjct: 203 NGMLL-NDKKVFVGHH--ISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFE-KF 258
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KA 291
+ A + D G+++G+GFV F A+ EMN S+ + + A K +
Sbjct: 259 GEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHERE 317
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
++QY + L A ++ QG ++V L D+ DE LRE F +
Sbjct: 318 EELRKQYEAARLEKA-------SKYQG---------VNLYVKNLTDDIDDEKLRELFGPY 361
Query: 352 GEILSVKI 359
G I S K+
Sbjct: 362 GTITSAKV 369
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 248 GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQA 302
G++KG+GFV F +E S+A+TEMN + +P+ + +A K Q + S QA
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQA 486
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI---PVGK---GCGFVQFANSRKDA 377
+ ++A+++VG LD V++ L E FS G++ S+++ V + G +V + N+ D
Sbjct: 50 QPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT-ADG 108
Query: 378 EVALQKLQGTAIGKQTVRLSWG-RNPGNKQ 406
E AL+ L T I + R+ W R+P ++
Sbjct: 109 ERALEDLNYTLIKGKPCRIMWSQRDPALRK 138
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 138/283 (48%), Gaps = 38/283 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++IGDL + E L+ FS G +++++V R+ T +S Y ++ F A AE+ L +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVI--KGRPIRIMWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D + R GYGFV F +RA+ MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKSRREREL 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+Y GA+V E N +++ D+ D+ LRE FS FG LS
Sbjct: 182 EY--------------GAKVM------EFTN--VYIKNFGEDMDDKRLREIFSAFGNTLS 219
Query: 357 VKIPV-----GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394
VK+ + +G GFV + N ++A+ A+ ++ G + + +
Sbjct: 220 VKVMMDDSGRSRGFGFVNYGN-HEEAQKAVSEMNGKEVNGRMI 261
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + MD+ L FS G ++VKV+ + +G+S G+GFV + +
Sbjct: 190 FTN-----VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEE 243
Query: 170 AEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + Y G ++ L R ++++V +L
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ F Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S+
Sbjct: 304 GIDDDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 279 RPMRIDVATPK--KASGYQQQYSSQALVLAGGPG 310
+P+ + +A K + + QY + + PG
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPG 394
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGC------GFVQFANSRKDAEVAL 381
A++++G L DV++ L E FS G I+S+++ ++ F DAE AL
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQP-ADAERAL 69
Query: 382 QKLQGTAIGKQTVRLSWG-RNPGNKQ 406
+ I + +R+ W R+PG ++
Sbjct: 70 DTMNFEVIKGRPIRIMWSQRDPGLRK 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,605,290
Number of Sequences: 539616
Number of extensions: 8493787
Number of successful extensions: 33030
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 27885
Number of HSP's gapped (non-prelim): 4017
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)