Query 013061
Match_columns 450
No_of_seqs 342 out of 3009
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 00:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 2.4E-46 5.3E-51 340.9 29.3 258 107-406 75-335 (506)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.2E-46 1.1E-50 360.4 33.0 282 114-404 2-351 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-45 2.3E-50 365.0 35.2 249 112-404 55-309 (578)
4 KOG0148 Apoptosis-promoting RN 100.0 1.3E-42 2.8E-47 297.1 25.8 239 112-405 3-241 (321)
5 KOG0145 RNA-binding protein EL 100.0 2.7E-41 5.9E-46 287.0 25.3 283 111-402 37-358 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-40 2.7E-45 341.1 34.1 269 114-402 87-364 (562)
7 TIGR01628 PABP-1234 polyadenyl 100.0 6.2E-41 1.3E-45 343.4 29.3 252 117-403 2-262 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-39 1.2E-43 320.7 32.3 276 114-403 1-352 (481)
9 TIGR01645 half-pint poly-U bin 100.0 2E-39 4.3E-44 320.6 28.7 174 113-289 105-284 (612)
10 TIGR01622 SF-CC1 splicing fact 100.0 2.8E-38 6.1E-43 316.7 32.2 285 112-401 86-447 (457)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1E-37 2.3E-42 311.5 31.9 278 114-402 95-480 (481)
12 KOG0144 RNA-binding protein CU 100.0 1.4E-38 3.1E-43 288.9 20.4 288 111-405 30-507 (510)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.2E-37 2E-41 310.0 30.6 276 111-401 171-501 (509)
14 KOG0127 Nucleolar protein fibr 100.0 2.1E-35 4.7E-40 275.4 26.2 282 116-402 6-378 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 2.3E-34 5E-39 271.5 25.4 168 204-405 103-278 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 5.8E-33 1.3E-37 262.0 24.6 173 110-290 102-276 (346)
17 KOG0123 Polyadenylate-binding 100.0 3.6E-31 7.7E-36 251.0 22.3 239 116-401 2-245 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 9.6E-31 2.1E-35 232.9 17.2 282 113-398 111-531 (544)
19 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-28 3E-33 243.7 25.7 228 113-353 136-367 (578)
20 KOG0123 Polyadenylate-binding 100.0 2E-29 4.3E-34 239.1 18.8 264 117-402 78-349 (369)
21 KOG0147 Transcriptional coacti 100.0 6.6E-30 1.4E-34 240.3 13.9 285 111-400 175-526 (549)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-28 3E-33 238.5 22.9 176 114-290 88-350 (352)
23 KOG0148 Apoptosis-promoting RN 100.0 7.2E-29 1.6E-33 212.9 17.4 168 114-290 61-239 (321)
24 TIGR01645 half-pint poly-U bin 100.0 3.7E-28 8E-33 240.8 22.5 176 207-405 106-287 (612)
25 KOG0110 RNA-binding protein (R 100.0 4.5E-28 9.7E-33 234.1 19.3 257 113-402 383-693 (725)
26 KOG0144 RNA-binding protein CU 100.0 7E-28 1.5E-32 219.5 13.1 171 206-409 32-213 (510)
27 KOG0127 Nucleolar protein fibr 99.9 2.8E-27 6.1E-32 221.4 13.4 279 115-402 117-530 (678)
28 KOG4211 Splicing factor hnRNP- 99.9 2.9E-25 6.3E-30 206.4 25.9 280 113-403 8-359 (510)
29 KOG4212 RNA-binding protein hn 99.9 5.3E-25 1.1E-29 200.8 24.7 169 112-285 41-290 (608)
30 TIGR01622 SF-CC1 splicing fact 99.9 8.7E-26 1.9E-30 226.4 21.9 173 206-401 87-265 (457)
31 KOG0117 Heterogeneous nuclear 99.9 1.7E-25 3.8E-30 204.9 15.8 172 113-293 162-335 (506)
32 KOG0131 Splicing factor 3b, su 99.9 1.5E-25 3.2E-30 181.7 12.5 174 113-293 7-181 (203)
33 KOG0145 RNA-binding protein EL 99.9 1.6E-24 3.4E-29 185.0 15.4 174 115-289 127-358 (360)
34 KOG1190 Polypyrimidine tract-b 99.9 3.2E-23 7E-28 187.9 20.4 280 112-403 25-374 (492)
35 KOG0131 Splicing factor 3b, su 99.9 4.2E-24 9.2E-29 173.3 11.8 168 206-406 7-181 (203)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.2E-23 6.9E-28 210.9 20.9 173 113-288 293-501 (509)
37 KOG0109 RNA-binding protein LA 99.9 4.2E-24 9.1E-29 185.5 12.2 149 209-403 3-151 (346)
38 KOG1190 Polypyrimidine tract-b 99.9 2.1E-22 4.5E-27 182.6 22.6 275 114-401 149-490 (492)
39 KOG0109 RNA-binding protein LA 99.9 5.5E-24 1.2E-28 184.8 9.7 149 116-290 3-151 (346)
40 KOG4205 RNA-binding protein mu 99.9 4.2E-23 9.1E-28 188.8 14.3 174 114-292 5-179 (311)
41 KOG1456 Heterogeneous nuclear 99.9 9.1E-20 2E-24 163.6 25.2 280 111-403 27-364 (494)
42 KOG0146 RNA-binding protein ET 99.9 2.3E-21 5E-26 166.4 12.1 195 207-404 18-367 (371)
43 KOG0120 Splicing factor U2AF, 99.9 6.4E-21 1.4E-25 182.7 14.0 270 112-400 172-490 (500)
44 KOG0146 RNA-binding protein ET 99.8 4.7E-21 1E-25 164.5 10.6 178 112-291 16-367 (371)
45 KOG0124 Polypyrimidine tract-b 99.8 2.5E-20 5.3E-25 166.7 11.1 172 209-403 114-291 (544)
46 KOG1456 Heterogeneous nuclear 99.8 4.6E-18 1E-22 152.8 25.3 276 115-402 120-491 (494)
47 KOG0110 RNA-binding protein (R 99.8 3.9E-20 8.5E-25 179.5 11.6 174 117-291 517-695 (725)
48 KOG4205 RNA-binding protein mu 99.8 1.3E-19 2.8E-24 165.9 14.0 169 207-405 5-179 (311)
49 PLN03134 glycine-rich RNA-bind 99.8 1.7E-18 3.7E-23 143.3 16.1 83 322-405 29-117 (144)
50 KOG4206 Spliceosomal protein s 99.8 5.9E-18 1.3E-22 143.6 17.3 190 206-400 7-220 (221)
51 KOG0105 Alternative splicing f 99.8 1.1E-17 2.5E-22 136.1 18.2 173 206-390 4-176 (241)
52 KOG1365 RNA-binding protein Fu 99.8 6.7E-19 1.5E-23 158.6 11.6 281 112-400 57-360 (508)
53 KOG0147 Transcriptional coacti 99.8 1E-18 2.2E-23 165.2 7.9 175 206-401 177-357 (549)
54 KOG0105 Alternative splicing f 99.7 2.8E-17 6E-22 133.8 12.9 152 112-276 3-175 (241)
55 KOG4206 Spliceosomal protein s 99.7 8.4E-17 1.8E-21 136.6 15.9 163 114-287 8-220 (221)
56 KOG4212 RNA-binding protein hn 99.7 3.6E-16 7.9E-21 143.4 17.5 197 206-404 42-296 (608)
57 PLN03134 glycine-rich RNA-bind 99.7 1.1E-16 2.3E-21 132.6 11.6 84 112-197 31-114 (144)
58 KOG4211 Splicing factor hnRNP- 99.7 2.4E-15 5.1E-20 140.8 20.5 167 206-400 8-180 (510)
59 KOG0106 Alternative splicing f 99.6 6.3E-16 1.4E-20 132.9 8.8 166 210-400 3-169 (216)
60 KOG1548 Transcription elongati 99.6 1.6E-14 3.5E-19 129.3 17.2 190 205-399 131-349 (382)
61 KOG1457 RNA binding protein (c 99.6 6.3E-15 1.4E-19 123.9 13.5 184 205-390 31-274 (284)
62 KOG1548 Transcription elongati 99.6 3.3E-14 7.2E-19 127.3 17.9 172 111-290 130-353 (382)
63 KOG0106 Alternative splicing f 99.6 5.7E-16 1.2E-20 133.2 6.5 152 116-286 2-168 (216)
64 KOG1457 RNA binding protein (c 99.6 1.5E-14 3.2E-19 121.7 13.6 161 111-276 30-273 (284)
65 KOG0122 Translation initiation 99.6 6.4E-15 1.4E-19 125.8 10.1 83 113-197 187-269 (270)
66 KOG0149 Predicted RNA-binding 99.6 3.3E-15 7.2E-20 127.1 7.9 82 111-195 8-89 (247)
67 KOG0107 Alternative splicing f 99.6 9.4E-15 2E-19 118.5 9.9 82 325-407 8-90 (195)
68 KOG0121 Nuclear cap-binding pr 99.6 4.5E-15 9.8E-20 113.7 7.0 82 112-195 33-114 (153)
69 PF00076 RRM_1: RNA recognitio 99.5 2E-14 4.3E-19 104.5 7.5 66 118-184 1-66 (70)
70 KOG0125 Ataxin 2-binding prote 99.5 2.4E-14 5.1E-19 127.3 9.0 83 320-403 89-175 (376)
71 KOG0122 Translation initiation 99.5 3.5E-14 7.5E-19 121.4 9.5 84 205-289 186-269 (270)
72 KOG4207 Predicted splicing fac 99.5 2.9E-14 6.3E-19 118.5 8.2 78 325-403 11-94 (256)
73 KOG0125 Ataxin 2-binding prote 99.5 8.3E-14 1.8E-18 123.9 10.8 100 105-208 86-185 (376)
74 PF00076 RRM_1: RNA recognitio 99.5 1.8E-13 4E-18 99.3 9.6 70 211-282 1-70 (70)
75 COG0724 RNA-binding proteins ( 99.5 2.8E-13 6E-18 127.1 13.3 150 115-267 115-283 (306)
76 KOG0149 Predicted RNA-binding 99.5 7E-14 1.5E-18 119.2 7.4 80 207-288 11-90 (247)
77 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 2.9E-18 100.0 7.3 65 118-183 1-65 (70)
78 PLN03120 nucleic acid binding 99.5 5.5E-13 1.2E-17 118.0 11.4 76 115-196 4-79 (260)
79 KOG4307 RNA binding protein RB 99.5 1.2E-12 2.6E-17 127.0 14.6 175 107-287 303-512 (944)
80 KOG0114 Predicted RNA-binding 99.4 7.6E-13 1.6E-17 97.6 9.5 78 323-401 14-94 (124)
81 COG0724 RNA-binding proteins ( 99.4 4.6E-12 9.9E-17 118.8 16.6 145 208-362 115-260 (306)
82 PLN03120 nucleic acid binding 99.4 6.2E-13 1.3E-17 117.7 9.7 73 327-401 4-79 (260)
83 KOG0121 Nuclear cap-binding pr 99.4 3.8E-13 8.1E-18 103.3 7.1 81 206-287 34-114 (153)
84 KOG0126 Predicted RNA-binding 99.4 1.4E-13 3E-18 112.2 4.3 88 205-293 32-119 (219)
85 KOG0107 Alternative splicing f 99.4 5.6E-13 1.2E-17 108.3 7.7 79 207-291 9-87 (195)
86 PF14259 RRM_6: RNA recognitio 99.4 1.7E-12 3.7E-17 94.2 9.5 70 211-282 1-70 (70)
87 KOG0114 Predicted RNA-binding 99.4 1.8E-12 3.9E-17 95.7 9.0 82 205-290 15-96 (124)
88 KOG0120 Splicing factor U2AF, 99.4 1.6E-12 3.5E-17 125.4 10.9 175 113-288 287-491 (500)
89 PLN03213 repressor of silencin 99.4 2.4E-12 5.1E-17 120.4 11.5 78 113-196 8-87 (759)
90 KOG0126 Predicted RNA-binding 99.4 3E-14 6.5E-19 116.1 -1.0 80 113-194 33-112 (219)
91 KOG0113 U1 small nuclear ribon 99.4 2.4E-12 5.2E-17 113.3 10.2 86 204-290 97-182 (335)
92 KOG4207 Predicted splicing fac 99.4 8.1E-13 1.8E-17 110.0 6.5 84 112-197 10-93 (256)
93 KOG0113 U1 small nuclear ribon 99.4 1.8E-12 3.9E-17 114.1 8.8 80 107-186 93-172 (335)
94 KOG1365 RNA-binding protein Fu 99.4 5.2E-12 1.1E-16 114.6 11.2 170 114-289 160-362 (508)
95 PF13893 RRM_5: RNA recognitio 99.4 5.4E-12 1.2E-16 86.9 8.5 55 344-399 1-56 (56)
96 PLN03121 nucleic acid binding 99.3 3.7E-12 8.1E-17 110.8 9.1 75 114-194 4-78 (243)
97 KOG0129 Predicted RNA-binding 99.3 3.2E-11 6.9E-16 114.3 15.5 157 112-269 256-431 (520)
98 KOG0108 mRNA cleavage and poly 99.3 1E-12 2.3E-17 126.1 5.5 82 209-291 19-100 (435)
99 KOG0111 Cyclophilin-type pepti 99.3 9.7E-13 2.1E-17 110.5 4.2 87 206-293 8-94 (298)
100 PLN03213 repressor of silencin 99.3 7.3E-12 1.6E-16 117.2 9.1 75 325-400 8-86 (759)
101 PLN03121 nucleic acid binding 99.3 1.1E-11 2.3E-16 108.0 9.5 73 326-400 4-79 (243)
102 KOG0130 RNA-binding protein RB 99.3 4.7E-12 1E-16 98.1 6.1 83 113-197 70-152 (170)
103 smart00362 RRM_2 RNA recogniti 99.3 1.8E-11 3.8E-16 88.9 8.5 68 329-397 1-72 (72)
104 smart00360 RRM RNA recognition 99.3 1.8E-11 3.9E-16 88.5 7.9 64 120-183 1-64 (71)
105 KOG0111 Cyclophilin-type pepti 99.3 5.2E-12 1.1E-16 106.2 4.8 79 326-405 9-93 (298)
106 KOG0108 mRNA cleavage and poly 99.3 1.1E-11 2.3E-16 119.2 7.5 80 116-197 19-98 (435)
107 KOG0130 RNA-binding protein RB 99.3 1.3E-11 2.8E-16 95.7 6.4 86 205-291 69-154 (170)
108 smart00362 RRM_2 RNA recogniti 99.2 6.2E-11 1.3E-15 86.0 9.5 72 210-284 1-72 (72)
109 smart00360 RRM RNA recognition 99.2 6.6E-11 1.4E-15 85.5 8.8 71 213-284 1-71 (71)
110 KOG4660 Protein Mei2, essentia 99.2 1.4E-10 3E-15 111.0 13.2 163 110-288 70-249 (549)
111 KOG0129 Predicted RNA-binding 99.2 2.9E-10 6.3E-15 107.9 14.9 167 203-383 254-432 (520)
112 KOG4307 RNA binding protein RB 99.2 2.5E-10 5.5E-15 111.2 13.8 186 209-398 312-510 (944)
113 KOG0128 RNA-binding protein SA 99.2 4.6E-12 9.9E-17 126.3 0.6 239 114-404 570-817 (881)
114 cd00590 RRM RRM (RNA recogniti 99.2 1.7E-10 3.6E-15 84.2 8.9 69 329-398 1-74 (74)
115 cd00590 RRM RRM (RNA recogniti 99.1 4.5E-10 9.7E-15 81.9 10.1 74 210-285 1-74 (74)
116 KOG4454 RNA binding protein (R 99.1 1.4E-11 3.1E-16 103.6 1.5 146 112-281 6-155 (267)
117 KOG0116 RasGAP SH3 binding pro 99.1 4E-10 8.6E-15 107.8 10.8 79 327-407 288-372 (419)
118 smart00361 RRM_1 RNA recogniti 99.1 4.3E-10 9.3E-15 81.2 8.3 62 222-284 2-70 (70)
119 KOG0226 RNA-binding proteins [ 99.1 1.1E-10 2.3E-15 100.7 4.8 172 115-290 96-271 (290)
120 smart00361 RRM_1 RNA recogniti 99.1 3.9E-10 8.4E-15 81.4 6.9 56 129-184 2-64 (70)
121 PF13893 RRM_5: RNA recognitio 99.0 1E-09 2.3E-14 75.4 7.7 56 225-286 1-56 (56)
122 KOG0132 RNA polymerase II C-te 99.0 5.3E-10 1.1E-14 110.5 8.0 80 326-406 420-499 (894)
123 KOG4210 Nuclear localization s 99.0 4.6E-10 1E-14 103.3 6.8 177 113-291 86-266 (285)
124 KOG0415 Predicted peptidyl pro 99.0 5.3E-10 1.2E-14 100.7 6.8 85 204-289 235-319 (479)
125 KOG0112 Large RNA-binding prot 99.0 3E-10 6.5E-15 114.0 5.3 163 204-403 368-532 (975)
126 KOG0132 RNA polymerase II C-te 99.0 6E-10 1.3E-14 110.2 7.2 107 115-229 421-527 (894)
127 KOG0153 Predicted RNA-binding 99.0 1.8E-09 3.8E-14 97.5 9.5 81 320-401 221-302 (377)
128 KOG0415 Predicted peptidyl pro 99.0 5.1E-10 1.1E-14 100.8 5.8 83 111-195 235-317 (479)
129 KOG0128 RNA-binding protein SA 99.0 3.8E-11 8.3E-16 119.8 -2.0 150 114-289 666-815 (881)
130 KOG4210 Nuclear localization s 99.0 1.3E-09 2.8E-14 100.3 7.3 176 207-406 87-268 (285)
131 KOG0112 Large RNA-binding prot 98.9 1.3E-09 2.9E-14 109.5 6.7 166 110-292 367-534 (975)
132 KOG4208 Nucleolar RNA-binding 98.9 2.8E-09 6E-14 89.6 7.4 79 112-190 46-125 (214)
133 KOG4208 Nucleolar RNA-binding 98.8 1.4E-08 3E-13 85.5 8.5 87 203-289 44-130 (214)
134 KOG4660 Protein Mei2, essentia 98.8 9.7E-09 2.1E-13 98.6 7.0 180 203-401 70-249 (549)
135 KOG4454 RNA binding protein (R 98.8 3.1E-09 6.7E-14 89.7 2.5 139 206-389 7-150 (267)
136 KOG0153 Predicted RNA-binding 98.7 1.7E-08 3.7E-13 91.2 6.7 80 110-196 223-302 (377)
137 KOG2193 IGF-II mRNA-binding pr 98.7 2.6E-09 5.6E-14 98.5 0.3 154 209-404 2-159 (584)
138 PF04059 RRM_2: RNA recognitio 98.7 2E-07 4.2E-12 70.6 9.1 80 116-195 2-85 (97)
139 KOG4661 Hsp27-ERE-TATA-binding 98.6 8.4E-08 1.8E-12 91.9 8.2 75 326-401 404-484 (940)
140 KOG4661 Hsp27-ERE-TATA-binding 98.6 7.2E-08 1.6E-12 92.3 7.7 81 208-289 405-485 (940)
141 KOG0226 RNA-binding proteins [ 98.6 1.4E-07 2.9E-12 81.9 6.5 81 112-194 187-267 (290)
142 KOG0533 RRM motif-containing p 98.6 2.7E-07 5.9E-12 81.8 8.6 82 207-290 82-163 (243)
143 KOG0533 RRM motif-containing p 98.4 6.3E-07 1.4E-11 79.5 7.9 80 112-194 80-159 (243)
144 KOG0151 Predicted splicing reg 98.4 7.9E-07 1.7E-11 87.7 7.7 83 112-196 171-256 (877)
145 PF08777 RRM_3: RNA binding mo 98.4 8.4E-07 1.8E-11 68.9 6.3 70 328-398 2-76 (105)
146 KOG0116 RasGAP SH3 binding pro 98.4 1.2E-06 2.6E-11 84.2 8.3 80 110-192 283-362 (419)
147 PF11608 Limkain-b1: Limkain b 98.4 1.5E-06 3.3E-11 62.3 6.5 71 328-403 3-78 (90)
148 KOG4209 Splicing factor RNPS1, 98.4 6.3E-07 1.4E-11 79.8 5.6 82 111-195 97-178 (231)
149 KOG0151 Predicted splicing reg 98.3 1.3E-06 2.8E-11 86.2 8.0 83 318-401 165-256 (877)
150 KOG4209 Splicing factor RNPS1, 98.3 2.6E-06 5.7E-11 75.9 9.0 78 323-402 97-180 (231)
151 PF04059 RRM_2: RNA recognitio 98.3 6.8E-06 1.5E-10 62.2 9.6 81 209-289 2-87 (97)
152 KOG4676 Splicing factor, argin 98.2 5.6E-07 1.2E-11 82.7 1.6 179 209-391 8-215 (479)
153 KOG1995 Conserved Zn-finger pr 98.1 1.1E-05 2.4E-10 74.1 7.8 82 324-406 63-158 (351)
154 KOG2193 IGF-II mRNA-binding pr 98.0 6.2E-07 1.3E-11 83.1 -1.5 155 116-289 2-157 (584)
155 KOG1995 Conserved Zn-finger pr 97.8 2.1E-05 4.7E-10 72.2 4.1 84 206-290 64-155 (351)
156 PF11608 Limkain-b1: Limkain b 97.8 0.00013 2.9E-09 52.5 7.2 71 209-289 3-77 (90)
157 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.5E-05 1.2E-09 50.7 4.8 52 328-381 2-53 (53)
158 KOG4676 Splicing factor, argin 97.7 8.4E-06 1.8E-10 75.1 0.4 155 115-277 7-214 (479)
159 KOG4849 mRNA cleavage factor I 97.7 3.1E-05 6.8E-10 70.3 3.8 71 115-185 80-152 (498)
160 PF08777 RRM_3: RNA binding mo 97.7 9.3E-05 2E-09 57.5 5.8 59 116-180 2-60 (105)
161 KOG1855 Predicted RNA-binding 97.7 0.00013 2.9E-09 68.3 7.3 64 323-387 227-309 (484)
162 KOG0115 RNA-binding protein p5 97.6 0.00012 2.6E-09 64.1 6.3 100 169-284 6-109 (275)
163 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.7E-09 66.3 6.6 72 328-400 115-201 (480)
164 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00015 3.2E-09 48.6 4.9 53 115-174 1-53 (53)
165 KOG1855 Predicted RNA-binding 97.6 8.5E-05 1.8E-09 69.6 4.8 80 112-191 228-320 (484)
166 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00036 7.9E-09 53.3 7.0 71 327-400 6-90 (100)
167 KOG3152 TBP-binding protein, a 97.4 0.00013 2.8E-09 63.9 3.7 73 114-186 73-157 (278)
168 KOG1996 mRNA splicing factor [ 97.4 0.00037 8E-09 62.1 5.9 59 341-400 300-365 (378)
169 KOG4849 mRNA cleavage factor I 97.3 0.00096 2.1E-08 60.9 7.7 76 324-400 77-161 (498)
170 COG5175 MOT2 Transcriptional r 97.2 0.0014 3E-08 59.7 7.7 82 208-290 114-204 (480)
171 KOG2202 U2 snRNP splicing fact 97.2 0.00015 3.3E-09 63.7 1.5 58 342-400 83-146 (260)
172 PF08952 DUF1866: Domain of un 97.2 0.002 4.3E-08 52.3 7.7 75 323-401 23-106 (146)
173 KOG3152 TBP-binding protein, a 97.2 0.00029 6.3E-09 61.7 3.1 74 207-281 73-158 (278)
174 KOG2314 Translation initiation 97.0 0.0015 3.3E-08 63.5 6.5 71 113-184 56-132 (698)
175 KOG0115 RNA-binding protein p5 97.0 0.0018 3.8E-08 57.0 6.0 87 263-389 6-97 (275)
176 KOG2202 U2 snRNP splicing fact 96.9 0.00052 1.1E-08 60.4 2.0 66 223-289 83-148 (260)
177 KOG2416 Acinus (induces apopto 96.9 0.00092 2E-08 65.4 3.8 80 321-401 438-521 (718)
178 PF10309 DUF2414: Protein of u 96.7 0.011 2.4E-07 40.6 6.8 54 116-177 6-62 (62)
179 KOG2314 Translation initiation 96.6 0.005 1.1E-07 60.1 6.6 78 206-285 56-140 (698)
180 KOG1996 mRNA splicing factor [ 96.6 0.0066 1.4E-07 54.4 6.7 66 222-288 300-366 (378)
181 KOG2416 Acinus (induces apopto 96.5 0.0032 6.9E-08 61.7 4.5 78 206-289 442-522 (718)
182 KOG2591 c-Mpl binding protein, 96.2 0.015 3.3E-07 56.7 7.4 69 327-397 175-247 (684)
183 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.025 5.4E-07 43.3 6.6 78 207-287 5-90 (100)
184 PF08675 RNA_bind: RNA binding 96.1 0.026 5.7E-07 40.9 6.1 55 116-179 10-64 (87)
185 PF04847 Calcipressin: Calcipr 95.9 0.021 4.7E-07 49.1 6.0 62 340-402 8-71 (184)
186 PF15023 DUF4523: Protein of u 95.8 0.045 9.7E-07 43.9 7.0 75 323-400 82-160 (166)
187 PF10309 DUF2414: Protein of u 95.8 0.044 9.6E-07 37.6 6.1 56 326-384 4-62 (62)
188 PF07576 BRAP2: BRCA1-associat 95.8 0.12 2.7E-06 40.3 9.3 68 114-183 12-80 (110)
189 KOG0921 Dosage compensation co 95.7 0.016 3.4E-07 60.2 5.1 35 416-450 1194-1228(1282)
190 PF08952 DUF1866: Domain of un 95.6 0.042 9E-07 44.8 6.5 58 224-291 52-109 (146)
191 KOG4574 RNA-binding protein (c 95.5 0.013 2.8E-07 60.0 3.8 74 329-403 300-375 (1007)
192 KOG4285 Mitotic phosphoprotein 95.5 0.047 1E-06 49.4 6.7 70 329-401 199-269 (350)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.014 3E-07 50.1 3.0 70 113-182 5-80 (176)
194 PF08675 RNA_bind: RNA binding 95.3 0.1 2.2E-06 37.9 6.8 54 328-385 10-63 (87)
195 KOG2135 Proteins containing th 95.3 0.011 2.3E-07 56.7 2.4 76 325-402 370-446 (526)
196 KOG0804 Cytoplasmic Zn-finger 95.3 0.1 2.2E-06 50.0 8.7 69 208-278 74-142 (493)
197 PF10567 Nab6_mRNP_bdg: RNA-re 95.2 0.37 8E-06 43.7 11.7 161 111-272 11-212 (309)
198 PF15023 DUF4523: Protein of u 95.2 0.05 1.1E-06 43.6 5.4 74 112-195 83-160 (166)
199 PF07576 BRAP2: BRCA1-associat 95.1 0.24 5.2E-06 38.7 9.1 68 208-277 13-80 (110)
200 KOG2253 U1 snRNP complex, subu 95.1 0.016 3.5E-07 57.9 2.9 70 113-191 38-107 (668)
201 KOG2591 c-Mpl binding protein, 95.0 0.047 1E-06 53.5 5.7 62 111-179 171-234 (684)
202 KOG4574 RNA-binding protein (c 95.0 0.016 3.4E-07 59.4 2.6 75 117-197 300-374 (1007)
203 KOG2068 MOT2 transcription fac 94.2 0.018 4E-07 53.0 0.9 73 328-401 78-162 (327)
204 KOG0804 Cytoplasmic Zn-finger 93.9 0.27 5.7E-06 47.3 8.0 68 115-184 74-142 (493)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 93.8 0.085 1.8E-06 45.3 4.3 81 207-288 6-97 (176)
206 PF11767 SET_assoc: Histone ly 93.7 0.26 5.7E-06 34.4 5.7 55 338-396 11-65 (66)
207 PF10567 Nab6_mRNP_bdg: RNA-re 93.5 2.1 4.6E-05 39.0 12.5 172 204-386 11-213 (309)
208 PF07292 NID: Nmi/IFP 35 domai 93.1 0.19 4.1E-06 37.4 4.5 73 254-349 1-74 (88)
209 PF03880 DbpA: DbpA RNA bindin 92.9 0.48 1E-05 34.2 6.3 59 337-399 11-74 (74)
210 KOG2068 MOT2 transcription fac 92.4 0.059 1.3E-06 49.8 1.2 82 208-290 77-164 (327)
211 PF07292 NID: Nmi/IFP 35 domai 92.0 0.14 3.1E-06 38.0 2.6 69 160-229 1-73 (88)
212 PRK11634 ATP-dependent RNA hel 91.3 1.5 3.3E-05 45.9 10.3 60 337-400 497-561 (629)
213 KOG2318 Uncharacterized conser 90.4 2.1 4.6E-05 42.7 9.6 129 111-286 170-305 (650)
214 KOG4285 Mitotic phosphoprotein 90.3 0.6 1.3E-05 42.5 5.3 62 115-184 197-258 (350)
215 PF04847 Calcipressin: Calcipr 90.1 0.86 1.9E-05 39.3 6.0 63 221-290 8-72 (184)
216 KOG2318 Uncharacterized conser 90.0 1.4 3.1E-05 43.8 8.0 78 322-400 169-306 (650)
217 TIGR02542 B_forsyth_147 Bacter 88.7 1.3 2.7E-05 34.2 5.3 118 122-262 10-130 (145)
218 PF11767 SET_assoc: Histone ly 88.6 2.6 5.7E-05 29.5 6.5 55 219-283 11-65 (66)
219 PF03880 DbpA: DbpA RNA bindin 88.0 2.5 5.4E-05 30.4 6.4 60 218-286 11-74 (74)
220 KOG4019 Calcineurin-mediated s 87.1 0.54 1.2E-05 39.6 2.7 77 326-403 9-91 (193)
221 KOG2253 U1 snRNP complex, subu 86.8 0.57 1.2E-05 47.3 3.2 74 321-398 34-107 (668)
222 KOG2135 Proteins containing th 86.5 0.43 9.3E-06 46.1 2.0 62 221-290 386-447 (526)
223 KOG4274 Positive cofactor 2 (P 86.3 0.9 1.9E-05 45.0 4.1 19 11-29 131-149 (742)
224 KOG3648 Golgi apparatus protei 84.9 0.22 4.8E-06 49.8 -0.6 19 4-22 39-57 (1179)
225 COG4371 Predicted membrane pro 81.0 2.9 6.2E-05 37.1 4.6 19 415-433 73-91 (334)
226 KOG4410 5-formyltetrahydrofola 78.2 3.7 8E-05 37.2 4.5 48 325-372 328-376 (396)
227 KOG0921 Dosage compensation co 76.2 4.1 8.8E-05 43.3 4.8 15 412-426 1195-1209(1282)
228 COG4371 Predicted membrane pro 73.9 4.5 9.8E-05 35.9 3.9 33 413-445 66-98 (334)
229 PF14111 DUF4283: Domain of un 73.6 3 6.5E-05 34.7 2.7 112 219-362 28-140 (153)
230 COG4907 Predicted membrane pro 72.0 3.7 8E-05 39.9 3.1 44 341-388 488-539 (595)
231 KOG3973 Uncharacterized conser 70.7 6.1 0.00013 36.9 4.1 19 211-229 152-170 (465)
232 KOG4410 5-formyltetrahydrofola 65.1 15 0.00032 33.4 5.3 55 110-169 325-379 (396)
233 KOG2891 Surface glycoprotein [ 65.0 25 0.00055 31.8 6.7 109 126-242 48-194 (445)
234 PF05918 API5: Apoptosis inhib 64.1 2.2 4.8E-05 43.3 0.0 18 256-273 328-345 (556)
235 KOG2891 Surface glycoprotein [ 64.1 4.4 9.5E-05 36.5 1.8 77 325-402 147-268 (445)
236 PF00403 HMA: Heavy-metal-asso 62.4 31 0.00068 23.3 5.6 55 329-383 1-58 (62)
237 KOG3424 40S ribosomal protein 61.0 20 0.00043 28.0 4.6 48 218-266 33-84 (132)
238 KOG4483 Uncharacterized conser 60.8 17 0.00036 34.8 5.0 53 116-175 392-445 (528)
239 KOG2295 C2H2 Zn-finger protein 60.2 1.8 3.8E-05 42.9 -1.4 69 114-182 230-298 (648)
240 KOG1883 Cofactor required for 59.9 9.7 0.00021 41.4 3.7 7 9-15 1401-1407(1517)
241 PF03468 XS: XS domain; Inter 59.1 14 0.00031 29.2 3.7 50 117-169 10-68 (116)
242 PF05918 API5: Apoptosis inhib 58.3 3.3 7.1E-05 42.1 0.0 11 126-136 189-199 (556)
243 PRK01178 rps24e 30S ribosomal 57.5 35 0.00076 26.1 5.4 48 218-266 29-80 (99)
244 PF02166 Androgen_recep: Andro 50.8 5.1 0.00011 37.2 0.0 13 129-141 152-164 (423)
245 PF15513 DUF4651: Domain of un 49.9 38 0.00082 23.3 4.0 19 130-148 9-27 (62)
246 COG5638 Uncharacterized conser 48.2 1.2E+02 0.0026 29.3 8.4 40 111-150 142-186 (622)
247 KOG2295 C2H2 Zn-finger protein 48.1 5.3 0.00011 39.8 -0.4 72 324-396 228-305 (648)
248 KOG4483 Uncharacterized conser 47.1 46 0.00099 32.0 5.5 57 325-383 389-446 (528)
249 KOG3648 Golgi apparatus protei 47.1 6.6 0.00014 39.8 0.1 6 21-26 53-58 (1179)
250 PTZ00071 40S ribosomal protein 46.5 57 0.0012 26.4 5.2 48 218-266 34-86 (132)
251 COG0445 GidA Flavin-dependent 45.4 1.2E+02 0.0026 31.0 8.4 85 159-244 238-336 (621)
252 KOG4274 Positive cofactor 2 (P 45.0 30 0.00066 34.8 4.2 15 160-174 389-403 (742)
253 PF03468 XS: XS domain; Inter 44.1 27 0.00059 27.6 3.2 54 329-382 10-75 (116)
254 PF07530 PRE_C2HC: Associated 40.0 61 0.0013 22.8 4.1 64 223-289 2-65 (68)
255 cd00874 RNA_Cyclase_Class_II R 39.9 2.5E+02 0.0055 26.8 9.5 115 121-260 118-239 (326)
256 KOG4213 RNA-binding protein La 39.5 38 0.00082 28.8 3.4 57 116-176 112-169 (205)
257 PRK14548 50S ribosomal protein 38.3 1.3E+02 0.0029 22.2 5.7 58 211-271 23-81 (84)
258 COG2004 RPS24A Ribosomal prote 37.2 1.2E+02 0.0026 23.5 5.5 48 218-266 30-81 (107)
259 TIGR03636 L23_arch archaeal ri 35.8 83 0.0018 22.8 4.3 54 330-384 16-74 (77)
260 COG5193 LHP1 La protein, small 35.7 17 0.00037 34.9 0.9 62 114-175 173-244 (438)
261 COG1512 Beta-propeller domains 35.2 65 0.0014 29.8 4.6 15 215-229 119-133 (271)
262 PRK14548 50S ribosomal protein 33.9 88 0.0019 23.1 4.2 54 330-384 23-81 (84)
263 KOG4365 Uncharacterized conser 33.8 6.7 0.00014 37.9 -2.0 72 328-401 4-81 (572)
264 KOG4407 Predicted Rho GTPase-a 33.5 12 0.00027 41.3 -0.4 8 24-31 322-329 (1973)
265 KOG1295 Nonsense-mediated deca 33.4 46 0.00099 31.9 3.3 70 113-182 5-77 (376)
266 PF02714 DUF221: Domain of unk 31.9 88 0.0019 29.7 5.2 55 160-229 1-55 (325)
267 PF14111 DUF4283: Domain of un 31.3 1.3E+02 0.0028 24.6 5.6 109 126-243 28-139 (153)
268 KOG1151 Tousled-like protein k 31.2 32 0.0007 33.8 2.0 12 330-341 493-504 (775)
269 PF00403 HMA: Heavy-metal-asso 31.1 1.6E+02 0.0036 19.6 5.7 54 117-176 1-58 (62)
270 PF04626 DEC-1_C: Dec-1 protei 30.4 39 0.00084 26.3 1.9 17 417-433 78-94 (132)
271 PF02714 DUF221: Domain of unk 30.3 52 0.0011 31.3 3.3 39 366-407 1-39 (325)
272 PF01282 Ribosomal_S24e: Ribos 29.8 2.1E+02 0.0045 21.1 5.7 48 218-266 11-62 (84)
273 KOG4592 Uncharacterized conser 29.8 33 0.00071 35.0 1.8 7 117-123 235-241 (728)
274 PRK11901 hypothetical protein; 29.6 1.3E+02 0.0028 28.4 5.5 63 114-180 244-307 (327)
275 TIGR03399 RNA_3prim_cycl RNA 3 29.1 5.1E+02 0.011 24.7 10.1 118 117-259 113-240 (326)
276 PRK10905 cell division protein 28.7 1.1E+02 0.0024 28.8 4.9 60 116-179 248-308 (328)
277 smart00596 PRE_C2HC PRE_C2HC d 28.6 1E+02 0.0022 21.7 3.6 63 223-288 2-64 (69)
278 PF14893 PNMA: PNMA 28.3 59 0.0013 31.0 3.2 85 207-294 17-102 (331)
279 KOG4368 Predicted RNA binding 28.1 27 0.00059 35.2 0.9 9 364-372 680-688 (757)
280 KOG4679 Uncharacterized protei 28.0 20 0.00043 35.1 0.0 17 125-141 252-268 (572)
281 COG2608 CopZ Copper chaperone 26.2 2.4E+02 0.0051 19.8 6.3 45 328-372 4-48 (71)
282 KOG4008 rRNA processing protei 26.0 60 0.0013 28.9 2.6 33 112-144 37-69 (261)
283 PRK10590 ATP-dependent RNA hel 25.1 5.1E+02 0.011 25.9 9.5 11 161-171 127-137 (456)
284 PRK10629 EnvZ/OmpR regulon mod 24.4 3.6E+02 0.0077 21.7 6.6 70 328-400 36-109 (127)
285 PRK11901 hypothetical protein; 24.4 1.6E+02 0.0035 27.8 5.2 62 207-274 244-307 (327)
286 PF08544 GHMP_kinases_C: GHMP 24.2 2.2E+02 0.0047 20.3 5.1 43 341-385 36-80 (85)
287 KOG4368 Predicted RNA binding 23.2 69 0.0015 32.5 2.7 9 221-229 552-560 (757)
288 PTZ00191 60S ribosomal protein 23.1 2.8E+02 0.0062 22.9 5.8 56 211-269 84-140 (145)
289 PF12687 DUF3801: Protein of u 22.5 2.1E+02 0.0045 25.2 5.4 55 126-182 38-95 (204)
290 PRK07772 single-stranded DNA-b 21.5 2.5E+02 0.0055 24.3 5.5 6 211-216 8-13 (186)
291 KOG1151 Tousled-like protein k 20.8 51 0.0011 32.6 1.3 10 212-221 392-401 (775)
292 KOG1295 Nonsense-mediated deca 20.7 1.3E+02 0.0028 29.0 3.9 68 208-276 7-77 (376)
293 COG5624 TAF61 Transcription in 20.6 29 0.00064 33.3 -0.3 15 18-32 213-227 (505)
294 PF11823 DUF3343: Protein of u 20.6 1.3E+02 0.0028 21.3 3.1 26 364-390 2-27 (73)
295 PF06403 Lamprin: Lamprin; In 20.5 1.1E+02 0.0023 23.1 2.6 33 416-449 41-73 (138)
296 PF14026 DUF4242: Protein of u 20.3 3.4E+02 0.0074 19.5 8.1 62 117-181 2-70 (77)
297 TIGR03636 L23_arch archaeal ri 20.1 3.3E+02 0.0071 19.7 5.0 57 117-176 15-73 (77)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-46 Score=340.93 Aligned_cols=258 Identities=18% Similarity=0.355 Sum_probs=226.4
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 107 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
.......-.+.|||+.||.++.|+||..+|++.|+|.++++++|+.+|.+||||||.|++.++|.+|++.||+..|. .+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~G 153 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PG 153 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CC
Confidence 33334456789999999999999999999999999999999999999999999999999999999999999999884 45
Q ss_pred CcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecC-CCCCceeEEEEEeCCHHHHH
Q 013061 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERS 265 (450)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~ 265 (450)
+.|.|..+ ..+++|||+|||+++++++|++.|.+..--|.+|.+..+. +..++||||||+|.+...|.
T Consensus 154 K~igvc~S-----------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa 222 (506)
T KOG0117|consen 154 KLLGVCVS-----------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAA 222 (506)
T ss_pred CEeEEEEe-----------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHH
Confidence 66666433 4678999999999999999999997555558888888765 46789999999999999999
Q ss_pred HHHHHhCC--ceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHH
Q 013061 266 RAMTEMNG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDED 343 (450)
Q Consensus 266 ~A~~~l~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 343 (450)
.|.++|-. ..++|..+.|+|++++.... .+.....+.|||+||+.++|+|.
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~d---------------------------ed~ms~VKvLYVRNL~~~tTeE~ 275 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEPD---------------------------EDTMSKVKVLYVRNLMESTTEET 275 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCCC---------------------------hhhhhheeeeeeeccchhhhHHH
Confidence 99887753 55799999999999986542 23455678999999999999999
Q ss_pred HHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 013061 344 LREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 344 L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 406 (450)
|+++|+.||.|++|+.++| +|||+|.+ +++|.+|++.+||++|+|..|.|+++|+...+.
T Consensus 276 lk~~F~~~G~veRVkk~rD--YaFVHf~e-R~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 276 LKKLFNEFGKVERVKKPRD--YAFVHFAE-REDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHhccceEEeecccc--eeEEeecc-hHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999965 99999999 999999999999999999999999999876443
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.2e-46 Score=360.45 Aligned_cols=282 Identities=26% Similarity=0.455 Sum_probs=226.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...+|||+|||+++|+++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|++..+ .++.++|.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999999988 556788887
Q ss_pred ccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
+.... .....++|||+|||.++++++|+++| +.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.||+
T Consensus 80 a~~~~-----~~~~~~~l~v~~l~~~~~~~~l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSS-----DSIKGANLYVSGLPKTMTQHELESIF-SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred ecccc-----cccccceEEECCccccCCHHHHHHHH-hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 76432 22345689999999999999999999 5999999999999988889999999999999999999999999
Q ss_pred ceecC--ccEEEeecCCCCCCcccccchh------hhhhhcC--------------------------------------
Q 013061 274 VYCSS--RPMRIDVATPKKASGYQQQYSS------QALVLAG-------------------------------------- 307 (450)
Q Consensus 274 ~~~~g--~~i~v~~~~~~~~~~~~~~~~~------~~~~~~~-------------------------------------- 307 (450)
..+.+ ++|.|.++.............. .......
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 98876 5688888765442111000000 0000000
Q ss_pred --------CCCCC---CCc-----ccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcE
Q 013061 308 --------GPGSN---GAR-----VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGC 365 (450)
Q Consensus 308 --------~~~~~---~~~-----~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~ 365 (450)
..... ... .............+|||+|||+++++++|+++|++||.|.+|+|+.+ +|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 00000 000 00000111223447999999999999999999999999999999864 799
Q ss_pred EEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 366 GFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 366 afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
|||+|.+ .++|.+|+..|||..|.||.|+|+|+.++..
T Consensus 314 aFV~F~~-~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 314 GFVSMTN-YDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEECC-HHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999 9999999999999999999999999988653
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-45 Score=364.95 Aligned_cols=249 Identities=19% Similarity=0.371 Sum_probs=210.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..+.. ++.+.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V 132 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGV 132 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Cccccc
Confidence 345689999999999999999999999999999999999 789999999999999999999999999987732 233444
Q ss_pred ccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCC-CeeEEEEee-cCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVII-DSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~~~~-~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
.++ ..+++|||+|||.++++++|.++|+ .++ .+.++.++. ...+++++|||||+|.+.++|..|++
T Consensus 133 ~~S-----------~~~~rLFVgNLP~~~TeeeL~eeFs-kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 133 CIS-----------VDNCRLFVGGIPKNKKREEILEEFS-KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred ccc-----------ccCceeEeecCCcchhhHHHHHHhh-cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 332 2467899999999999999999996 664 355544432 33456789999999999999999998
Q ss_pred HhCC--ceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHh
Q 013061 270 EMNG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREP 347 (450)
Q Consensus 270 ~l~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~ 347 (450)
.|+. ..++++.|.|+|+.++.... .......++|||+||++++++++|+++
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d---------------------------~~~~~~~k~LfVgNL~~~~tee~L~~~ 253 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVD---------------------------EDVMAKVKILYVRNLMTTTTEEIIEKS 253 (578)
T ss_pred HhhccceEecCceEEEEeeccccccc---------------------------ccccccccEEEEeCCCCCCCHHHHHHH
Confidence 8864 45789999999998764321 112234579999999999999999999
Q ss_pred cccc--CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 348 FSQF--GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 348 F~~~--G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
|+.| |.|++|.++ +++|||+|.+ .++|.+|++.||+.+|+|+.|+|+|++++..
T Consensus 254 F~~f~~G~I~rV~~~--rgfAFVeF~s-~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 254 FSEFKPGKVERVKKI--RDYAFVHFED-REDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhcCCCceEEEEee--cCeEEEEeCC-HHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9999 999999887 4699999999 9999999999999999999999999987543
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-42 Score=297.13 Aligned_cols=239 Identities=33% Similarity=0.632 Sum_probs=207.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
+...|||||+||..++||+-|..||++.|.|+.|+|+.| ++++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467899999999999999999999999999999999986 4556
Q ss_pred ccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 013061 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 271 (450)
.|+.......+......-.+||+.|..+++.|+|++.|. +||+|.+.+|++|..|+++|||+||.|...++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 666555333334444455799999999999999999995 9999999999999999999999999999999999999999
Q ss_pred CCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhcccc
Q 013061 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351 (450)
Q Consensus 272 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~ 351 (450)
||.-|+.|.|+..|+..|........ ...........++.++|||+||+..++|++|++.|+.|
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~----------------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f 188 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKP----------------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF 188 (321)
T ss_pred CCeeeccceeeccccccCccccCCCC----------------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC
Confidence 99999999999999998874322111 11222233456778999999999999999999999999
Q ss_pred CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCC
Q 013061 352 GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 352 G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 405 (450)
|.|.+|++.++++++||+|++ .|.|.+||..+|+.+|.|..|++.|.|.....
T Consensus 189 G~I~EVRvFk~qGYaFVrF~t-kEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 189 GPIQEVRVFKDQGYAFVRFET-KEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred CcceEEEEecccceEEEEecc-hhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999 99999999999999999999999999976543
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=287.04 Aligned_cols=283 Identities=27% Similarity=0.463 Sum_probs=233.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.+.....|.|.-||..+|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+ ..+.|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 345566799999999999999999999999999999999999999999999999999999999999999988 678899
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
|+++.++.. ....-.|||.+||+.+|..||..+|+ .||.|...+|+.|.-+|.+||.+||.|+..++|++||..
T Consensus 115 VSyARPSs~-----~Ik~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSD-----SIKDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChh-----hhcccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 999886543 33456899999999999999999996 999999999999999999999999999999999999999
Q ss_pred hCCceec--CccEEEeecCCCCCCcccccchhhh---hhhcCCC----------------C------------CCCCccc
Q 013061 271 MNGVYCS--SRPMRIDVATPKKASGYQQQYSSQA---LVLAGGP----------------G------------SNGARVQ 317 (450)
Q Consensus 271 l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------~------------~~~~~~~ 317 (450)
|||..-. ..+|.|+++...............- .....++ . .-.....
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 9998864 4589999987654322111100000 0000000 0 0000011
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCC
Q 013061 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGK 391 (450)
Q Consensus 318 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g 391 (450)
...+.......+|||-||..+.+|..|.++|.+||.|..|+|++| +|++||++.+ .++|..|+..|||..+.+
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtN-YdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN-YDEAAMAIASLNGYRLGD 347 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecc-hHHHHHHHHHhcCccccc
Confidence 112223345789999999999999999999999999999999986 7999999999 999999999999999999
Q ss_pred eEEEEEeccCC
Q 013061 392 QTVRLSWGRNP 402 (450)
Q Consensus 392 ~~l~v~~~~~~ 402 (450)
|.|.|+|..++
T Consensus 348 rvLQVsFKtnk 358 (360)
T KOG0145|consen 348 RVLQVSFKTNK 358 (360)
T ss_pred eEEEEEEecCC
Confidence 99999998765
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-40 Score=341.10 Aligned_cols=269 Identities=27% Similarity=0.491 Sum_probs=223.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...+|||+|||+++++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.+++..+ .++.+.+..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEec
Confidence 45689999999999999999999999999999999985 688999999999999999999999999988 445666644
Q ss_pred ccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
...............++|||+||+.++|+++|+++|+ .||.|.++.+.++. ++.++|+|||+|.+.++|.+|++.|++
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~-~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA-KFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 4332222122334457899999999999999999994 99999999999985 588999999999999999999999999
Q ss_pred ceec----CccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhcc
Q 013061 274 VYCS----SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (450)
Q Consensus 274 ~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~ 349 (450)
..+. ++.+.|.++..+..+............ .........++|||+||+.++++++|+++|+
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~--------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQ--------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhh--------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 9999 999999888766443211100000000 0011233457899999999999999999999
Q ss_pred ccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 350 QFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 350 ~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
.||.|.+|+|+.+ +++|||+|.+ .++|.+|+..|||+.|+|+.|+|.|+..+
T Consensus 308 ~~G~i~~~~i~~d~~g~~~g~gfV~f~~-~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 308 ECGEITSAKVMLDEKGVSRGFGFVCFSN-PEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred hcCCeEEEEEEECCCCCcCCeEEEEeCC-HHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9999999999764 6999999999 99999999999999999999999999864
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.2e-41 Score=343.36 Aligned_cols=252 Identities=30% Similarity=0.523 Sum_probs=222.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~ 196 (450)
+|||+|||+++||++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|++|++.+++..+ .++.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999988 567899988764
Q ss_pred cCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 013061 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (450)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 276 (450)
....+ .....+|||+||+.++++++|+++|+ .||.|.+|++..+. +++++|||||+|.+.++|.+|++.+++..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 43222 22356899999999999999999995 99999999999885 588999999999999999999999999999
Q ss_pred cCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEE
Q 013061 277 SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356 (450)
Q Consensus 277 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~ 356 (450)
.++.|.|.....+..+. .......++|||+||+.++|+++|+++|+.||.|.+
T Consensus 155 ~~~~i~v~~~~~~~~~~---------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE---------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cCceEEEeccccccccc---------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 99999997765543321 012233468999999999999999999999999999
Q ss_pred EEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeC----CeEEEEEeccCCC
Q 013061 357 VKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIG----KQTVRLSWGRNPG 403 (450)
Q Consensus 357 v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~----g~~l~v~~~~~~~ 403 (450)
+.+.++ +++|||+|.+ .++|.+|++.|++..|. |+.|.|.++..+.
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~-~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEK-HEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EEEEECCCCCcccEEEEEECC-HHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 998764 6799999999 99999999999999999 9999999886544
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.4e-39 Score=320.69 Aligned_cols=276 Identities=20% Similarity=0.248 Sum_probs=211.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHh--cCCCCCCCCCccee
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY--SGSLMPNTDQPFRL 191 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l--~g~~~~~~~~~i~~ 191 (450)
++++|||+|||+++++++|+++|+.||.|.+|++++++ +||||+|.+.++|.+|++.+ ++..+ .+++|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEE
Confidence 47899999999999999999999999999999998653 69999999999999999876 44555 6788999
Q ss_pred ccccccCCCCcc-------cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHH
Q 013061 192 NWATFSGSDRRT-------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (450)
Q Consensus 192 ~~~~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a 264 (450)
.|+......+.. ......+|+|.||++.+|+++|+++|+ .||.|.+|.++++.. +++|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 888654322211 112234789999999999999999995 999999999987643 46899999999999
Q ss_pred HHHHHHhCCceecC--ccEEEeecCCCCCCc---------ccccch----hhhh-----hhcC-------------CCCC
Q 013061 265 SRAMTEMNGVYCSS--RPMRIDVATPKKASG---------YQQQYS----SQAL-----VLAG-------------GPGS 311 (450)
Q Consensus 265 ~~A~~~l~~~~~~g--~~i~v~~~~~~~~~~---------~~~~~~----~~~~-----~~~~-------------~~~~ 311 (450)
.+|++.||+..|.+ +.|+|.|+++....- .....- ...+ .... +.+.
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999999964 578888887643210 000000 0000 0000 0000
Q ss_pred C------------CC----------------c----ccCCCCCCCCCCcEEEEecCCC-CCCHHHHHHhccccCceEEEE
Q 013061 312 N------------GA----------------R----VQGSQSDGESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVK 358 (450)
Q Consensus 312 ~------------~~----------------~----~~~~~~~~~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~v~ 358 (450)
. .. . ...........+++|||+||++ .+++++|+++|+.||.|.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 0 00 0 0000011234678999999997 699999999999999999999
Q ss_pred eeCC-CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 359 IPVG-KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 359 i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
|+++ +++|||+|.+ .++|..|+..|||..|.|+.|+|++++...
T Consensus 308 i~~~~~g~afV~f~~-~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 308 FMKNKKETALIEMAD-PYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EEeCCCCEEEEEECC-HHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9876 6999999999 999999999999999999999999997653
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2e-39 Score=320.62 Aligned_cols=174 Identities=18% Similarity=0.362 Sum_probs=153.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++++++|+++|..||+|.+|+|+.|+.+++++|||||+|.+.++|.+|++.|||..+. ++.|++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999994 5666665
Q ss_pred cccccCCC------CcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013061 193 WATFSGSD------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 193 ~~~~~~~~------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
+....... ........++|||+||+.++++++|+++| +.||.|.++++.+|..+++++|||||+|.+.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 54322111 11222345789999999999999999999 599999999999999999999999999999999999
Q ss_pred HHHHhCCceecCccEEEeecCCC
Q 013061 267 AMTEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 267 A~~~l~~~~~~g~~i~v~~~~~~ 289 (450)
|++.||+..++|+.|+|.++.+.
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999998753
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.8e-38 Score=316.66 Aligned_cols=285 Identities=22% Similarity=0.402 Sum_probs=220.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+.+++++|+++|+.||.|.+|+|+.|+.+++++|||||+|.+.++|.+||. |++..+. +++|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~--g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL--GRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC--CeeeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999995 8999884 455555
Q ss_pred ccccccCCCC-------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHH
Q 013061 192 NWATFSGSDR-------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (450)
Q Consensus 192 ~~~~~~~~~~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a 264 (450)
.+........ .......++|||+|||..+++++|+++| +.||.|..|.++.+..++.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 5443221110 1111236899999999999999999999 5999999999999999899999999999999999
Q ss_pred HHHHHHhCCceecCccEEEeecCCCCCCccccc-----------------chhhhh--hh--cC---CC-----CC----
Q 013061 265 SRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ-----------------YSSQAL--VL--AG---GP-----GS---- 311 (450)
Q Consensus 265 ~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~-----------------~~~~~~--~~--~~---~~-----~~---- 311 (450)
.+|+..|++..|.|+.|.|.++........... .....+ .. .. .. ..
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 999999999999999999999763321100000 000000 00 00 00 00
Q ss_pred ----------C--C-----------CcccCC--CCCCCCCCcEEEEecCCCCCC----------HHHHHHhccccCceEE
Q 013061 312 ----------N--G-----------ARVQGS--QSDGESNNATIFVGALDSDVS----------DEDLREPFSQFGEILS 356 (450)
Q Consensus 312 ----------~--~-----------~~~~~~--~~~~~~~~~~l~V~nlp~~~t----------~~~L~~~F~~~G~v~~ 356 (450)
. . ...... .........+|+|.||-...+ .+||+++|++||.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 0 0 000000 001235678999999955443 3789999999999999
Q ss_pred EEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 357 VKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 357 v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
|.|.. ..|++||+|.+ .++|.+|+..|||+.|+|+.|.+.|...
T Consensus 402 v~v~~~~~~G~~fV~F~~-~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 402 IYVDTKNSAGKIYLKFSS-VDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEEeCCCCceeEEEEECC-HHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99874 46999999999 9999999999999999999999998753
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1e-37 Score=311.45 Aligned_cols=278 Identities=18% Similarity=0.251 Sum_probs=215.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...+|+|+||++++|+++|+++|+.||.|.+|.|++++. +++|||+|.+.++|.+|++.|||..+.+.+..++|.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345899999999999999999999999999999988653 3689999999999999999999999977666777777
Q ss_pred ccccCCC-------------------Cc----------------------------------------------------
Q 013061 194 ATFSGSD-------------------RR---------------------------------------------------- 202 (450)
Q Consensus 194 ~~~~~~~-------------------~~---------------------------------------------------- 202 (450)
++..... ..
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 6531100 00
Q ss_pred -------------------ccCCCCceEEECCCCC-CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013061 203 -------------------TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (450)
Q Consensus 203 -------------------~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~ 262 (450)
....++++|||+||+. .+|+++|+++|+ .||.|.+|++++++ +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~-~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFC-VYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012457999999998 699999999995 99999999999863 589999999999
Q ss_pred HHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhh----hhcCCCCCC-CCcccCCCCCCCCCCcEEEEecCCC
Q 013061 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQAL----VLAGGPGSN-GARVQGSQSDGESNNATIFVGALDS 337 (450)
Q Consensus 263 ~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nlp~ 337 (450)
+|..|+..||+..|.|+.|+|.++................. ......... ............+++.+|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 99999999999999999999999865432111100000000 000000000 0000000112235678999999999
Q ss_pred CCCHHHHHHhccccCc--eEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeE------EEEEeccCC
Q 013061 338 DVSDEDLREPFSQFGE--ILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQT------VRLSWGRNP 402 (450)
Q Consensus 338 ~~t~~~L~~~F~~~G~--v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~------l~v~~~~~~ 402 (450)
++++++|+++|+.||. |..|++... +++|||+|.+ .++|..|+..||++.|.++. |+|+|++++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~-~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWES-VEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCC-HHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999998 888888654 4899999999 99999999999999999985 999999874
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=288.87 Aligned_cols=288 Identities=25% Similarity=0.488 Sum_probs=234.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCC-CCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~~~i 189 (450)
.+.+.-+|||+-||..++|+||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|+.. .+++...+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3456778999999999999999999999999999999999999999999999999999999999999875 578889999
Q ss_pred eeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
.++++..+.... ..+++|||+.|++.+||.||+++|+ +||.|++|.|++|.. +.+||||||+|.+.+.|..||+
T Consensus 110 qvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 110 QVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eecccchhhhcc----ccchhhhhhhccccccHHHHHHHHH-hhCccchhhheeccc-ccccceeEEEEehHHHHHHHHH
Confidence 999887543322 4578999999999999999999996 999999999999976 8999999999999999999999
Q ss_pred HhCCce-e--cCccEEEeecCCCCCCcccccc---hhhhhhhcCC-----------------------------------
Q 013061 270 EMNGVY-C--SSRPMRIDVATPKKASGYQQQY---SSQALVLAGG----------------------------------- 308 (450)
Q Consensus 270 ~l~~~~-~--~g~~i~v~~~~~~~~~~~~~~~---~~~~~~~~~~----------------------------------- 308 (450)
.||+.. + +..+|.|+|+++++.+..+... ........+.
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~ 263 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGL 263 (510)
T ss_pred hhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccc
Confidence 999865 4 4678999999988754322110 0000000000
Q ss_pred ------------------------------------------C-------------------------------------
Q 013061 309 ------------------------------------------P------------------------------------- 309 (450)
Q Consensus 309 ------------------------------------------~------------------------------------- 309 (450)
.
T Consensus 264 ~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~ 343 (510)
T KOG0144|consen 264 PPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPA 343 (510)
T ss_pred cCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCch
Confidence 0
Q ss_pred --C-------C------------------------------------------------------CCCcccCCCCCCCCC
Q 013061 310 --G-------S------------------------------------------------------NGARVQGSQSDGESN 326 (450)
Q Consensus 310 --~-------~------------------------------------------------------~~~~~~~~~~~~~~~ 326 (450)
. . .............+.
T Consensus 344 ~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpe 423 (510)
T KOG0144|consen 344 NYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPE 423 (510)
T ss_pred hcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCC
Confidence 0 0 000001112223345
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
...|||.+||-+.-+.+|...|..||.|+..++.-+ +.|+||.|++ ..+|..||..|||+.++.++|+|.+.+
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen-~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYEN-AQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccc-hhhhHHHHHHhcchhhccccceEEeee
Confidence 668999999999999999999999999988766543 6899999999 999999999999999999999999998
Q ss_pred CCCCC
Q 013061 401 NPGNK 405 (450)
Q Consensus 401 ~~~~~ 405 (450)
.+.+.
T Consensus 503 ~~~np 507 (510)
T KOG0144|consen 503 DRNNP 507 (510)
T ss_pred ccCCC
Confidence 86543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.2e-37 Score=310.01 Aligned_cols=276 Identities=18% Similarity=0.288 Sum_probs=208.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcc------------CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT------------GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 178 (450)
.....++|||+|||+.+|+++|+++|..+ +.|.++.+ ++.+|||||+|.+.++|..|| .|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 45678899999999999999999999975 23444444 345689999999999999999 599
Q ss_pred CCCCCCCCCcceeccccccCCC------------------------CcccCCCCceEEECCCCCCCCHHHHHHHHhhcCC
Q 013061 179 GSLMPNTDQPFRLNWATFSGSD------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234 (450)
Q Consensus 179 g~~~~~~~~~i~~~~~~~~~~~------------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g 234 (450)
+..+.+ ..|+|......... ........++|||+|||..+++++|+++| +.||
T Consensus 244 g~~~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G 320 (509)
T TIGR01642 244 SIIYSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL-ESFG 320 (509)
T ss_pred CeEeeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC
Confidence 998844 56666433211100 00112345789999999999999999999 5999
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCC
Q 013061 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGA 314 (450)
Q Consensus 235 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (450)
.|..+.++++..++.++|||||+|.+.++|..||..|++..|.++.|.|.++................. ... ....
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~-~~~---~~~~ 396 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAP-VTL---LAKA 396 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccc-ccc---cccc
Confidence 999999999998999999999999999999999999999999999999999865433211111000000 000 0000
Q ss_pred cccCCCCCCCCCCcEEEEecCCCC----------CCHHHHHHhccccCceEEEEeeCC---------CcEEEEEeecCHH
Q 013061 315 RVQGSQSDGESNNATIFVGALDSD----------VSDEDLREPFSQFGEILSVKIPVG---------KGCGFVQFANSRK 375 (450)
Q Consensus 315 ~~~~~~~~~~~~~~~l~V~nlp~~----------~t~~~L~~~F~~~G~v~~v~i~~~---------~g~afV~F~~~~~ 375 (450)
...........++.+|+|.||... .+.++|+++|+.||.|++|.|++. .|+|||+|.+ .+
T Consensus 397 ~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~-~e 475 (509)
T TIGR01642 397 LSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYAD-VR 475 (509)
T ss_pred chhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECC-HH
Confidence 000001122345789999999632 123689999999999999999753 4899999999 99
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 376 DAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 376 ~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
+|.+|+..|||+.|.|+.|.|+|...
T Consensus 476 ~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 476 SAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 99999999999999999999999653
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=275.40 Aligned_cols=282 Identities=21% Similarity=0.343 Sum_probs=218.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
.||||++||++++.++|.++|+.+|+|..|.++.++.++.++||+||.|.-.+++.+|+..++++.+.+ +.+++..+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~G--r~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEG--RILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccc--eeccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999955 455555554
Q ss_pred ccCCCC-------c--------------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEE
Q 013061 196 FSGSDR-------R--------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG 254 (450)
Q Consensus 196 ~~~~~~-------~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~a 254 (450)
...... . ....+.-.|.|+|||+.+...+|..+|+ .||.|.+|.|.+...++.+ |||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~dgklc-GFa 161 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKDGKLC-GFA 161 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCCCCcc-ceE
Confidence 322111 0 0112245799999999999999999996 9999999999988775555 999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhh--------------------------------h
Q 013061 255 FVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQ--------------------------------A 302 (450)
Q Consensus 255 fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~--------------------------------~ 302 (450)
||.|.+..+|..|++.+|+..|+||+|-|.|+.++..-......... .
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ed 241 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSED 241 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccc
Confidence 99999999999999999999999999999999876532211100000 0
Q ss_pred hhhcCC---------C----------CC-CCCccc------CCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEE
Q 013061 303 LVLAGG---------P----------GS-NGARVQ------GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356 (450)
Q Consensus 303 ~~~~~~---------~----------~~-~~~~~~------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~ 356 (450)
..-..+ . .. ...... ...........+|||.|||+++|+++|.++|++||.|.+
T Consensus 242 eEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~y 321 (678)
T KOG0127|consen 242 EEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKY 321 (678)
T ss_pred cccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcccee
Confidence 000000 0 00 000000 000111223479999999999999999999999999999
Q ss_pred EEeeCC------CcEEEEEeecCHHHHHHHHHHh-----cC-CeeCCeEEEEEeccCC
Q 013061 357 VKIPVG------KGCGFVQFANSRKDAEVALQKL-----QG-TAIGKQTVRLSWGRNP 402 (450)
Q Consensus 357 v~i~~~------~g~afV~F~~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~~~~~ 402 (450)
+.|+.+ +|+|||.|.+ ..+|..||.+. .| ..|+||.|+|..+-.+
T Consensus 322 a~iV~~k~T~~skGtAFv~Fkt-~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 322 AIIVKDKDTGHSKGTAFVKFKT-QIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEEEeccCCCCcccceEEEecc-HHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 888753 6999999999 99999999876 23 6789999999987743
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.3e-34 Score=271.53 Aligned_cols=168 Identities=26% Similarity=0.493 Sum_probs=151.1
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||+++|+++|+++| +.||.|.+|+|++|..+++++|||||+|.++++|.+||+.|++..+.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34467899999999999999999999 59999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-
Q 013061 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~- 362 (450)
.++.+.... ...++|||+|||.++++++|+++|++||.|++|+|+++
T Consensus 182 ~~a~p~~~~--------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 182 SYARPGGES--------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ecccccccc--------------------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 998653211 12457999999999999999999999999999999865
Q ss_pred -----CcEEEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEeccCCCCC
Q 013061 363 -----KGCGFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWGRNPGNK 405 (450)
Q Consensus 363 -----~g~afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~~ 405 (450)
+++|||+|.+ .++|.+|++.||+..|.+ +.|+|.|++.....
T Consensus 230 ~tg~~kG~aFV~F~~-~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 230 LTGTPRGVAFVRFNK-REEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccceEEEEEECC-HHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 4899999999 999999999999999876 78999999876543
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.8e-33 Score=262.02 Aligned_cols=173 Identities=26% Similarity=0.477 Sum_probs=155.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
......++|||+|||+++|+++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++|++.|++..+ ..++|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCcee
Confidence 3455788999999999999999999999999999999999999999999999999999999999999999998 56788
Q ss_pred eeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
+|.++.... ....+++|||+|||.++|+++|+++| +.||+|.+++|++|+.+++++|+|||+|.+.++|++||+
T Consensus 180 ~V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeecccccc-----cccccceeEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 888876432 22345689999999999999999999 599999999999999899999999999999999999999
Q ss_pred HhCCceecC--ccEEEeecCCCC
Q 013061 270 EMNGVYCSS--RPMRIDVATPKK 290 (450)
Q Consensus 270 ~l~~~~~~g--~~i~v~~~~~~~ 290 (450)
.||+..+.+ ++|+|.++....
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HhCCCccCCCceeEEEEECCccc
Confidence 999998865 688888887653
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=3.6e-31 Score=250.99 Aligned_cols=239 Identities=29% Similarity=0.559 Sum_probs=215.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
..|||+ +++|+..|.++|+++|+|+++++++|. | +-|||||.|.++++|++|++.+|...+ .++++++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 368998 999999999999999999999999998 6 999999999999999999999999999 77999999997
Q ss_pred ccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 013061 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 275 (450)
..... |||.||+++++..+|.++|+ .||.|.+|++..+.+ | ++|| ||+|++++.|.+|+..+||..
T Consensus 74 rd~~~----------~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCce----------eeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 54333 99999999999999999995 999999999999976 5 9999 999999999999999999999
Q ss_pred ecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceE
Q 013061 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (450)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~ 355 (450)
+.++.|.|.....+..+...... ....-+.++|.|++.+++++.|.++|..||.|.
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc------------------------hhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 99999999998887665322211 223346789999999999999999999999999
Q ss_pred EEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 356 SVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 356 ~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
.+.++.+ ++++||.|.+ .++|..|+..|++..+.+..+.|.-+.+
T Consensus 196 s~~v~~~~~g~~~~~gfv~f~~-~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 196 SVAVMRDSIGKSKGFGFVNFEN-PEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred EEEEeecCCCCCCCccceeecC-hhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999874 6999999999 9999999999999999999999987775
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9.6e-31 Score=232.92 Aligned_cols=282 Identities=20% Similarity=0.337 Sum_probs=214.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.--|+|||+.|.+++.|+.||..|..||+|++|.+..|+.|++.+|||||+|+-+|.|..|++.+|+.++.+ +.|+|.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG--RNiKVg 188 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG--RNIKVG 188 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC--cccccc
Confidence 356799999999999999999999999999999999999999999999999999999999999999999955 555554
Q ss_pred cccccCCCC------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013061 193 WATFSGSDR------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 193 ~~~~~~~~~------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
....-.... ..+...-++|||..+.++++++||+..| +.||+|..|.+-+++..+.+|||+|++|.+..+-..
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 332111111 1223445789999999999999999999 699999999999999989999999999999999999
Q ss_pred HHHHhCCceecCccEEEeecCCCCCCcccccc----h-------------hhh---------hhhcCCC-----------
Q 013061 267 AMTEMNGVYCSSRPMRIDVATPKKASGYQQQY----S-------------SQA---------LVLAGGP----------- 309 (450)
Q Consensus 267 A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~----~-------------~~~---------~~~~~~~----------- 309 (450)
||..+|-+.++|..++|-.+.........-.. + ... +...+.+
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~ 347 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQ 347 (544)
T ss_pred HhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccC
Confidence 99999999999999999876543311100000 0 000 0000000
Q ss_pred ---------------C--------CC-----------------CCcc---------------------------------
Q 013061 310 ---------------G--------SN-----------------GARV--------------------------------- 316 (450)
Q Consensus 310 ---------------~--------~~-----------------~~~~--------------------------------- 316 (450)
+ .+ ...+
T Consensus 348 p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI 427 (544)
T KOG0124|consen 348 PLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSI 427 (544)
T ss_pred CCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccc
Confidence 0 00 0000
Q ss_pred cCC--------CCCCCCCCcEEEEecC--CCCCC---HHHHHHhccccCceEEEEeeCCC----------cEEEEEeecC
Q 013061 317 QGS--------QSDGESNNATIFVGAL--DSDVS---DEDLREPFSQFGEILSVKIPVGK----------GCGFVQFANS 373 (450)
Q Consensus 317 ~~~--------~~~~~~~~~~l~V~nl--p~~~t---~~~L~~~F~~~G~v~~v~i~~~~----------g~afV~F~~~ 373 (450)
.+. .......+++|.++|+ |.+++ +.+|.+.|.+||.|.+|.|...+ -..||+|+.
T Consensus 428 ~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~- 506 (544)
T KOG0124|consen 428 SGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSI- 506 (544)
T ss_pred cCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeech-
Confidence 000 0001134678888888 55554 46799999999999999987642 367999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 374 RKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 374 ~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
..++.+|+.+|+|+.|.|+++..+.
T Consensus 507 ~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 507 ASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred hhHHHHHHHhhccceecCceeehhh
Confidence 9999999999999999999987663
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.4e-28 Score=243.68 Aligned_cols=228 Identities=18% Similarity=0.239 Sum_probs=175.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-ceEEEEEec-CCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++|||+|||+++++++|.++|+.++. ++++.++.. ...++++|||||+|++.++|..|++.|+...+...++.|+
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34689999999999999999999999874 555544432 3456789999999999999999999887655444678899
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcC--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~--g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 268 (450)
|.|+..............++|||+||+.++++++|+++|+ .| |.|++|.+++ +||||+|.+.++|.+|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKIR--------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEeec--------CeEEEEeCCHHHHHHHH
Confidence 9999876555444445568999999999999999999995 99 9999998763 49999999999999999
Q ss_pred HHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhc
Q 013061 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348 (450)
Q Consensus 269 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F 348 (450)
+.||+..|+|+.|+|+++.+........... .....................+.+.++++.|++++.+++.|.++|
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~r----g~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f 362 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYTR----GTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFP 362 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCccccccccc----ccCCCcccccccccccCcccCccccccccccccccccccchhhcc
Confidence 9999999999999999998864432110000 000000001111112233445678899999999999999999999
Q ss_pred cccCc
Q 013061 349 SQFGE 353 (450)
Q Consensus 349 ~~~G~ 353 (450)
..+|.
T Consensus 363 ~~~g~ 367 (578)
T TIGR01648 363 RMPGP 367 (578)
T ss_pred ccCcc
Confidence 88775
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-29 Score=239.10 Aligned_cols=264 Identities=28% Similarity=0.477 Sum_probs=216.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~ 196 (450)
.|||.||+++++..+|.++|+.||.|++|++.+|.+ | ++|| ||+|.++++|++|++.+||..+.+ ..+-+.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~--kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNG--KKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCC--CeeEEeeccc
Confidence 399999999999999999999999999999999964 5 9999 999999999999999999999954 4444433332
Q ss_pred cCCC--Cc-ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 197 SGSD--RR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 197 ~~~~--~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
.... .. .....-..+++.+++.+.+.+.|.++| ..+|.|..+.++.+.. +.+++|+||.|.+.++|..|+..|++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f-~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF-SAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhh-cccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccC
Confidence 2111 11 122334578999999999999999999 5999999999999965 66999999999999999999999999
Q ss_pred ceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCc
Q 013061 274 VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353 (450)
Q Consensus 274 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~ 353 (450)
..+.+..+.|..+..+..+...-...... .............|||.|++..++++.|+++|+.||.
T Consensus 231 ~~~~~~~~~V~~aqkk~e~~~~l~~~~~~--------------~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~Ge 296 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSEREAELKRKFEQ--------------EFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGE 296 (369)
T ss_pred CcCCccceeecccccchhhHHHHhhhhHh--------------hhhhccccccccccccccCccccchhHHHHHHhcccc
Confidence 99999999998887743322111000000 0011222445678999999999999999999999999
Q ss_pred eEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 354 ILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 354 v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
|..++|..+ ++++||.|.+ .++|.+|+..+|+..+.++.|.|.++...
T Consensus 297 I~s~kv~~~~~g~skG~gfV~fs~-~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 297 ITSAKVMVDENGKSKGFGFVEFSS-PEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred eeeEEEEeccCCCccceEEEEcCC-HHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 999988763 7999999999 99999999999999999999999998843
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=6.6e-30 Score=240.35 Aligned_cols=285 Identities=18% Similarity=0.348 Sum_probs=217.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++||+--|+..+++-+|.+||+.+|.|.+|.++.|+.+++++|.|||+|.|.++.-.|+ .|.|..+ .+.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCceeE
Confidence 3456689999999999999999999999999999999999999999999999999999999999 7899988 445555
Q ss_pred eccccccCCCC---------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCH
Q 013061 191 LNWATFSGSDR---------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (450)
Q Consensus 191 ~~~~~~~~~~~---------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~ 261 (450)
|.......... .....+-+.|||+||..++++++|+.+| +.||.|+.|.+.+|.+||.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecH
Confidence 54333221110 1111222349999999999999999999 6999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCceecCccEEEeecCCCCCCccc-----cc---------------chhhhhhhcCCC------------
Q 013061 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ-----QQ---------------YSSQALVLAGGP------------ 309 (450)
Q Consensus 262 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~------------ 309 (450)
++|.+|+..||+.++-|+.|+|.....+...... .. ............
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 9999999999999999999999875543221110 00 000000000000
Q ss_pred -----------CC----CCCcccCCCCCCCCCCcEEEEecCCCC--CC--------HHHHHHhccccCceEEEEeeCCC-
Q 013061 310 -----------GS----NGARVQGSQSDGESNNATIFVGALDSD--VS--------DEDLREPFSQFGEILSVKIPVGK- 363 (450)
Q Consensus 310 -----------~~----~~~~~~~~~~~~~~~~~~l~V~nlp~~--~t--------~~~L~~~F~~~G~v~~v~i~~~~- 363 (450)
.. .........+....++.|+.++|+=.. .| .+||.+.|.+||.|.+|.|.++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 00 000000001112266778888888322 22 57899999999999999998875
Q ss_pred cEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 364 GCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 364 g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
|+.||.|.+ .++|..|+.+|||++|.|+.|...|-.
T Consensus 491 g~VYvrc~s-~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 491 GCVYVRCPS-AEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred ceEEEecCc-HHHHHHHHHHHhhhhhccceeEEEEee
Confidence 999999999 999999999999999999999999865
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.4e-28 Score=238.48 Aligned_cols=176 Identities=26% Similarity=0.501 Sum_probs=156.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
..++|||+|||+++++++|+++|+.||.|..++++.+..++.++|||||+|.+.++|++|++.|++..+.+...++++.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999988778888887
Q ss_pred ccccCCCCc-----------------------------------------------------------------------
Q 013061 194 ATFSGSDRR----------------------------------------------------------------------- 202 (450)
Q Consensus 194 ~~~~~~~~~----------------------------------------------------------------------- 202 (450)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 753320000
Q ss_pred ----------------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013061 203 ----------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 203 ----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
.......+|||+|||.++++++|+++|+ .||.|.+++|++|..++.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011123699999999999999999995 99999999999999899999999999999999999
Q ss_pred HHHHhCCceecCccEEEeecCCCC
Q 013061 267 AMTEMNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 267 A~~~l~~~~~~g~~i~v~~~~~~~ 290 (450)
||..|||..|+|+.|+|.|...+.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999998764
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.2e-29 Score=212.89 Aligned_cols=168 Identities=30% Similarity=0.574 Sum_probs=154.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...-|||+.|...++.|+|++.|.+||+|.+++|++|.+|+++|||+||.|.+.++|+.||..|||.-| -.|.||-.|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNW 138 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNW 138 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeeccc
Confidence 356799999999999999999999999999999999999999999999999999999999999999999 568999999
Q ss_pred ccccCCCCc-----------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013061 194 ATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (450)
Q Consensus 194 ~~~~~~~~~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~ 262 (450)
+..+..+.. ..+..+++||++|++.-+|+++|++.|+ .||.|.+|+++++ +||+||.|.+.|
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tkE 211 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETKE 211 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecchh
Confidence 987654332 3446678999999999999999999996 9999999999988 569999999999
Q ss_pred HHHHHHHHhCCceecCccEEEeecCCCC
Q 013061 263 ERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 263 ~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 290 (450)
+|..||..+|+.+|.|..+++.|-+...
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999987653
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=3.7e-28 Score=240.81 Aligned_cols=176 Identities=20% Similarity=0.434 Sum_probs=150.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++|||+||++++++++|+++|. .||.|.+|++++|+.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~-~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFD-PFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-ccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999995 9999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
........ ............++|||+||+.++++++|+++|+.||.|.+|+|.++
T Consensus 185 ~~~p~a~~---------------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg 243 (612)
T TIGR01645 185 SNMPQAQP---------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 243 (612)
T ss_pred cccccccc---------------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Confidence 33211100 00000111223578999999999999999999999999999999863
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 405 (450)
+|+|||+|.+ .++|.+|++.||+..|+|+.|+|.++.++...
T Consensus 244 ksKGfGFVeFe~-~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 244 GHKGYGFIEYNN-LQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CcCCeEEEEECC-HHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 6899999999 99999999999999999999999999976544
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=234.07 Aligned_cols=257 Identities=22% Similarity=0.376 Sum_probs=206.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...+.|+|+|||..+..++|..+|..||+|..|.+.+... -++|+|.+..+|..|++.|....+ ...++.+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~--k~~plyle 454 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLE 454 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhh--ccCccccc
Confidence 4457899999999999999999999999999994443221 499999999999999999988776 44455555
Q ss_pred cccccCCC--------------C----c---------------------------ccCCCCceEEECCCCCCCCHHHHHH
Q 013061 193 WATFSGSD--------------R----R---------------------------TEACSDLSIFVGDLAPDVTDSILQE 227 (450)
Q Consensus 193 ~~~~~~~~--------------~----~---------------------------~~~~~~~~l~v~nl~~~~t~~~l~~ 227 (450)
|+....-. . . ......++|||.||+++.|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 44311000 0 0 0001123499999999999999999
Q ss_pred HHhhcCCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhh
Q 013061 228 TFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALV 304 (450)
Q Consensus 228 ~f~~~~g~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~ 304 (450)
.|. ..|.|..+.|...++. -.+.||+||+|.+.++|..|+..|+|..++|+.|.|.++..+....
T Consensus 535 ~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~----------- 602 (725)
T KOG0110|consen 535 LFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST----------- 602 (725)
T ss_pred HHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc-----------
Confidence 995 8999999988765432 2356999999999999999999999999999999999998332211
Q ss_pred hcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHH
Q 013061 305 LAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAE 378 (450)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~ 378 (450)
.+.........+.|+|.|||+..+..+|+++|..||.|.+|+|+.. +|+|||+|-+ ..+|.
T Consensus 603 ------------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t-~~ea~ 669 (725)
T KOG0110|consen 603 ------------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT-PREAK 669 (725)
T ss_pred ------------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC-cHHHH
Confidence 0112223334789999999999999999999999999999999863 7999999999 99999
Q ss_pred HHHHHhcCCeeCCeEEEEEeccCC
Q 013061 379 VALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 379 ~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
.|+++|..+.|.||+|.++|++..
T Consensus 670 nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 670 NAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHhhcccceechhhheehhccc
Confidence 999999999999999999999864
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7e-28 Score=219.48 Aligned_cols=171 Identities=27% Similarity=0.505 Sum_probs=152.8
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---cCccEE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPMR 282 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~ 282 (450)
....+|||+-+|..++|.||+++| ++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|++.+. ...+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 556789999999999999999999 6999999999999999999999999999999999999999998664 357899
Q ss_pred EeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC
Q 013061 283 IDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG 362 (450)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~ 362 (450)
|++++.++.+ .....+|||+-|++.+||++|+++|++||.|++|.|+++
T Consensus 111 vk~Ad~E~er-------------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd 159 (510)
T KOG0144|consen 111 VKYADGERER-------------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD 159 (510)
T ss_pred ecccchhhhc-------------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheec
Confidence 9999877654 134579999999999999999999999999999999985
Q ss_pred -----CcEEEEEeecCHHHHHHHHHHhcCCe-eCC--eEEEEEeccCCCCCCCCC
Q 013061 363 -----KGCGFVQFANSRKDAEVALQKLQGTA-IGK--QTVRLSWGRNPGNKQWRG 409 (450)
Q Consensus 363 -----~g~afV~F~~~~~~A~~A~~~l~g~~-~~g--~~l~v~~~~~~~~~~~~~ 409 (450)
||||||+|.+ .+.|..|++.|||.. +.| .+|.|.|+.+.+.+..+.
T Consensus 160 ~~~~sRGcaFV~fst-ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 160 PDGLSRGCAFVKFST-KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred ccccccceeEEEEeh-HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 8999999999 999999999999985 665 579999999887766543
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=221.36 Aligned_cols=279 Identities=24% Similarity=0.420 Sum_probs=201.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
.-+|.|+||||.+.+.+|..+|+.||.|.+|.|.+.+ .|+-.|||||.|....+|..|++.+|+..+ .+++|-|+|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5689999999999999999999999999999998765 466669999999999999999999999999 6788888888
Q ss_pred cccCC--------------------------------------------C--C----------c----------c-----
Q 013061 195 TFSGS--------------------------------------------D--R----------R----------T----- 203 (450)
Q Consensus 195 ~~~~~--------------------------------------------~--~----------~----------~----- 203 (450)
-.... + + . .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 52200 0 0 0 0
Q ss_pred --------------cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 204 --------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 204 --------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
......+|||+|||+++|+++|.+.|+ .||+|..+.|+.++.|+.++|.|||.|.+..+|..||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 001125899999999999999999995 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-ceecCccEEEeecCCCCCCccccc-------chhhhhhhcCCC-------CCCCCcc-------------
Q 013061 270 EM-----NG-VYCSSRPMRIDVATPKKASGYQQQ-------YSSQALVLAGGP-------GSNGARV------------- 316 (450)
Q Consensus 270 ~l-----~~-~~~~g~~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~-------~~~~~~~------------- 316 (450)
.. .+ ..+.||.|.|..+.++.....-.. .....++++.-+ .......
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 76 23 678999999999987653221100 000011111100 0000000
Q ss_pred --cCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccc----c-CceEE-EEeeC---------CCcEEEEEeecCHHHHHH
Q 013061 317 --QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ----F-GEILS-VKIPV---------GKGCGFVQFANSRKDAEV 379 (450)
Q Consensus 317 --~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~----~-G~v~~-v~i~~---------~~g~afV~F~~~~~~A~~ 379 (450)
.-..+......+.|.|.|||..++...|..+.-. | +.|.. |+.+. +.+++|+.|.. .+.|.+
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~E-hEhalk 511 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTE-HEHALK 511 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccH-HHHHHH
Confidence 0011112233467899999999999999887643 2 23322 22222 36999999998 999999
Q ss_pred HHHHhcCCeeCCeEEEEEeccCC
Q 013061 380 ALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 380 A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
|+..+ |. + +.-+|.|....
T Consensus 512 alk~~-G~-l--kq~~Vefev~~ 530 (678)
T KOG0127|consen 512 ALKVL-GV-L--KQAKVEFEVDG 530 (678)
T ss_pred hhhcc-cc-c--ccceEEEEecc
Confidence 99866 21 1 34455565543
No 28
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.95 E-value=2.9e-25 Score=206.42 Aligned_cols=280 Identities=22% Similarity=0.300 Sum_probs=190.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.....|.+++|||++|++||.+||+.++ |.++.+.+ .+|+..|-|||+|.+++++++|+++ +-..+ ..+-|.|-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEEE
Confidence 4567899999999999999999999995 78876666 4699999999999999999999965 55555 33444443
Q ss_pred cccccCCC---C---cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHH
Q 013061 193 WATFSGSD---R---RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERS 265 (450)
Q Consensus 193 ~~~~~~~~---~---~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~ 265 (450)
.+...+.+ + .........|.|++||+.||++||.++|+ -.-.|.. |.++.+. .+++.|.|||.|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeeccC-CCCcccceEEEecCHHHHH
Confidence 33222111 1 12224567899999999999999999995 5444444 4455554 4789999999999999999
Q ss_pred HHHHHhCCceecCccEEEeecCCCCCCccccc----------ch-----hhhhhh----------------cCCC-----
Q 013061 266 RAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ----------YS-----SQALVL----------------AGGP----- 309 (450)
Q Consensus 266 ~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~----------~~-----~~~~~~----------------~~~~----- 309 (450)
.|+. -|...|..|.|+|..+.....+..... .. ...... ..+.
T Consensus 160 ~Al~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~ 238 (510)
T KOG4211|consen 160 IALG-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSR 238 (510)
T ss_pred HHHH-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccccc
Confidence 9996 677778889999877643221111000 00 000000 0000
Q ss_pred ----------CC---------CC----Cccc--CCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCce-EEEEeeCC-
Q 013061 310 ----------GS---------NG----ARVQ--GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI-LSVKIPVG- 362 (450)
Q Consensus 310 ----------~~---------~~----~~~~--~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v-~~v~i~~~- 362 (450)
++ .. .... ............++.++||++.++.+|.++|+..-.+ ..|+|-.+
T Consensus 239 ~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dG 318 (510)
T KOG4211|consen 239 YPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDG 318 (510)
T ss_pred CccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCC
Confidence 00 00 0000 0000111223688999999999999999999976444 34444443
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
.+.|+|+|.+ .++|..|+.+ ++..+..+.|.+.......
T Consensus 319 r~TGEAdveF~t-~edav~Amsk-d~anm~hrYVElFln~~~g 359 (510)
T KOG4211|consen 319 RATGEADVEFAT-GEDAVGAMGK-DGANMGHRYVELFLNGAPG 359 (510)
T ss_pred ccCCcceeeccc-chhhHhhhcc-CCcccCcceeeecccCCcc
Confidence 5899999999 9999999885 8888888888887654433
No 29
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=5.3e-25 Score=200.76 Aligned_cols=169 Identities=17% Similarity=0.263 Sum_probs=136.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhh-ccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
....|.+||.|||+++.+.+|+++|. +.|+|+-|.++.|. +|+++|||.|||+++|.+++|++.||...+.+ +++.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G--R~l~ 117 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNG--RELV 117 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccC--ceEE
Confidence 34456799999999999999999995 68999999999995 69999999999999999999999999998844 4444
Q ss_pred ecccccc---------------------------------------------CCCC-c----------------------
Q 013061 191 LNWATFS---------------------------------------------GSDR-R---------------------- 202 (450)
Q Consensus 191 ~~~~~~~---------------------------------------------~~~~-~---------------------- 202 (450)
+...... ...+ .
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 4322210 0000 0
Q ss_pred ------------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 203 ------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 203 ------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
.......++||.||.+.+....|++.| .-.|.|..|.+-.|++ +.++|++.++|.+.-+|..||..
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvf-gmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVF-GMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHh-ccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHh
Confidence 011223579999999999999999999 5899999999999987 79999999999999999999999
Q ss_pred hCCceecCccEEEee
Q 013061 271 MNGVYCSSRPMRIDV 285 (450)
Q Consensus 271 l~~~~~~g~~i~v~~ 285 (450)
+++.-+.+++..+..
T Consensus 276 l~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 276 LDRQGLFDRRMTVRL 290 (608)
T ss_pred hccCCCccccceeec
Confidence 997655666655554
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=8.7e-26 Score=226.44 Aligned_cols=173 Identities=27% Similarity=0.491 Sum_probs=148.5
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||+|||.++++++|+++|+ .||.|.+|.+++|..+++++|||||+|.+.++|.+||. |++..+.|+.|.|.+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~-~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFS-KVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4567999999999999999999995 99999999999999999999999999999999999996 999999999999988
Q ss_pred cCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---
Q 013061 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--- 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--- 362 (450)
+........... .......+..++|||+|||..+++++|+++|+.||.|..|.|..+
T Consensus 165 ~~~~~~~~~~~~--------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~ 224 (457)
T TIGR01622 165 SQAEKNRAAKAA--------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET 224 (457)
T ss_pred cchhhhhhhhcc--------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC
Confidence 754332210000 000011223789999999999999999999999999999998843
Q ss_pred ---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 363 ---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 363 ---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
+++|||+|.+ .++|.+|+..|+|..|.|+.|+|.|+..
T Consensus 225 g~~~g~afV~f~~-~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 225 GRSKGFGFIQFHD-AEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CccceEEEEEECC-HHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999 9999999999999999999999999773
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=204.93 Aligned_cols=172 Identities=20% Similarity=0.340 Sum_probs=154.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-ceEEEEEecC-CCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++|||+|||...++++|.+.|++.++ |++|.+..++ +..++||||||+|.|...|..|.++|-...+.-.+..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 45678999999999999999999999984 8888888765 457899999999999999999999988777777788999
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
|+|+.+...........-..|||+||+.++|+|.|+++| +.||.|++|+.++| ||||.|.+.++|.+|++.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F-~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLF-NEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHH-HhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 999998887777666667789999999999999999999 59999999998866 999999999999999999
Q ss_pred hCCceecCccEEEeecCCCCCCc
Q 013061 271 MNGVYCSSRPMRIDVATPKKASG 293 (450)
Q Consensus 271 l~~~~~~g~~i~v~~~~~~~~~~ 293 (450)
+|+++|+|..|.|.+++|...+.
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hcCceecCceEEEEecCChhhhc
Confidence 99999999999999999876544
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=181.71 Aligned_cols=174 Identities=29% Similarity=0.574 Sum_probs=155.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
....+|||+||+..++++-|.++|-+.|+|+++++.+|+.+...+|||||+|.++|+|+-|++-||...+ .+++|++.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv~ 84 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRVN 84 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEEE
Confidence 4556999999999999999999999999999999999999999999999999999999999999997777 67888887
Q ss_pred cccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 013061 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (450)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 271 (450)
.+. ........+.+|||+||.+.++|..|.+.|+ .||.+.. -.++++.+|+.++|++||-|++.+.+.+|+..+
T Consensus 85 kas----~~~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 85 KAS----AHQKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred ecc----cccccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 776 1122223346899999999999999999996 9998765 478999999999999999999999999999999
Q ss_pred CCceecCccEEEeecCCCCCCc
Q 013061 272 NGVYCSSRPMRIDVATPKKASG 293 (450)
Q Consensus 272 ~~~~~~g~~i~v~~~~~~~~~~ 293 (450)
|+..+++++|+|+++..+...+
T Consensus 160 ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccchhcCCceEEEEEEecCCCc
Confidence 9999999999999998776655
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=185.03 Aligned_cols=174 Identities=27% Similarity=0.483 Sum_probs=156.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
...|||.+||..+|..||+++|++||.|..-+|+.|..+|.+||.+||.|...++|+.|++.|||..-.++..+|.|.++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCc----------------------------------------------------------ccCCCCceEEECCC
Q 013061 195 TFSGSDRR----------------------------------------------------------TEACSDLSIFVGDL 216 (450)
Q Consensus 195 ~~~~~~~~----------------------------------------------------------~~~~~~~~l~v~nl 216 (450)
........ ......-+|||-||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 63311100 00122357999999
Q ss_pred CCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCC
Q 013061 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 217 ~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 289 (450)
.++.+|.-|+.+|+ .||.|..|++++|..|.++|||+||.+.+-++|..||..|||..+.++.+.|.+...+
T Consensus 287 spd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 287 SPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999995 9999999999999999999999999999999999999999999999999999987654
No 34
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=3.2e-23 Score=187.86 Aligned_cols=280 Identities=20% Similarity=0.300 Sum_probs=195.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
..+++.|.+|||||+++|+||..++.+||.|+.+.+++.++ -||++|.|+++|...+.......-.-++.++-+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 35789999999999999999999999999999999998775 599999999999986654443333334444444
Q ss_pred ccccccC------------------------CC-----------CcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCe
Q 013061 192 NWATFSG------------------------SD-----------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236 (450)
Q Consensus 192 ~~~~~~~------------------------~~-----------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i 236 (450)
.++.... .. ......+-..++|.++-+.++-|-|+.+|+ +||.|
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS-~fG~V 177 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS-KFGFV 177 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHh-hccee
Confidence 4332110 00 001111223577899999999999999996 99999
Q ss_pred eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecC--ccEEEeecCCCCCCcc-----cccchhhhhhhc---
Q 013061 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS--RPMRIDVATPKKASGY-----QQQYSSQALVLA--- 306 (450)
Q Consensus 237 ~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~i~v~~~~~~~~~~~-----~~~~~~~~~~~~--- 306 (450)
..|.-+...+ + =-|+|+|.+.+.|..|...|+|+.|.+ +.++|.+++-....-. ........+...
T Consensus 178 lKIiTF~Knn-~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 178 LKIITFTKNN-G---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred EEEEEEeccc-c---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 9887664432 1 148999999999999999999999854 4556666543211000 000000000000
Q ss_pred ------------CCC---CCCC------CcccCCCCCCCC--CCcEEEEecCCCC-CCHHHHHHhccccCceEEEEeeCC
Q 013061 307 ------------GGP---GSNG------ARVQGSQSDGES--NNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVG 362 (450)
Q Consensus 307 ------------~~~---~~~~------~~~~~~~~~~~~--~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~v~i~~~ 362 (450)
..+ +.+. ............ ..++|.|.||... +|.+.|..+|.-||+|.+|+|+.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 000 0000 000000011111 2578889988655 999999999999999999999886
Q ss_pred -CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 363 -KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 363 -~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
+..|+|.|.| ...|..|++.|+|.++.|+.|+|.++|...
T Consensus 334 kkd~ALIQmsd-~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 334 KKDNALIQMSD-GQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred CCcceeeeecc-hhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 5799999999 999999999999999999999999999544
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=173.32 Aligned_cols=168 Identities=29% Similarity=0.509 Sum_probs=148.8
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
....+|||+||+..++++.|+|+|- ..|+|.++.+.+|+.+...+|||||+|.++++|+-|++-||...+.|++|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3467999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEE-EeeC---
Q 013061 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSV-KIPV--- 361 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v-~i~~--- 361 (450)
+..... .......|||+||.+.+++..|.+.|+.||.+... ++++
T Consensus 86 as~~~~-------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~ 134 (203)
T KOG0131|consen 86 ASAHQK-------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD 134 (203)
T ss_pred cccccc-------------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCccccccc
Confidence 873222 22334789999999999999999999999988662 4443
Q ss_pred ---CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 013061 362 ---GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 362 ---~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 406 (450)
.++++||.|.+ .+.+.+|+..|||..++++.+.|+|+......+
T Consensus 135 tg~~~~~g~i~~~s-feasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 135 TGNPKGFGFINYAS-FEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCCCCeEEechh-HHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 26899999999 999999999999999999999999999876554
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=3.2e-23 Score=210.85 Aligned_cols=173 Identities=19% Similarity=0.304 Sum_probs=143.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+.+|+++|+++|+.||.|..+.|++++.+|.++|||||+|.+.++|..|++.|++..+. +..|+|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999994 4556666
Q ss_pred cccccCCCCc-----------------------ccCCCCceEEECCCCCCC----------CHHHHHHHHhhcCCCeeEE
Q 013061 193 WATFSGSDRR-----------------------TEACSDLSIFVGDLAPDV----------TDSILQETFSSKYPSVKGA 239 (450)
Q Consensus 193 ~~~~~~~~~~-----------------------~~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~~g~i~~v 239 (450)
++........ ....++.+|+|.|+.... ..++|+++| +.||.|..|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEE
Confidence 6543211100 012356789999985321 236789999 599999999
Q ss_pred EEeecC---CCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 240 KVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 240 ~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
.|.++. .++...|++||+|.+.++|.+|+..|||..|.|+.|.|.|...
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 998753 3455679999999999999999999999999999999999765
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=4.2e-24 Score=185.50 Aligned_cols=149 Identities=21% Similarity=0.480 Sum_probs=139.5
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
.+|||+|||..+++.+|+.+| +.||.|.++.|+++ |+||..+++..+..||.+|++..|+|..|.|+.++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 379999999999999999999 69999999999966 999999999999999999999999999999999987
Q ss_pred CCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEE
Q 013061 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFV 368 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV 368 (450)
+.. .+++|+|+||.+.++.++|+..|++||.|.+++|. ++++||
T Consensus 74 Ksk----------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fv 117 (346)
T KOG0109|consen 74 KSK----------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFV 117 (346)
T ss_pred cCC----------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEE
Confidence 733 36799999999999999999999999999999999 569999
Q ss_pred EeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 369 QFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 369 ~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
+|+- .++|..|++.|++++|.|++|+|.+++.+-
T Consensus 118 h~d~-~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 118 HFDR-AEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred EEee-ccchHHHHhcccccccccceeeeeeecccc
Confidence 9999 999999999999999999999999988654
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=2.1e-22 Score=182.64 Aligned_cols=275 Identities=19% Similarity=0.309 Sum_probs=208.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCccee-EEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.--+++|.|+-+.+|-+.|..+|++||.|..|.-+...+ +| |+|.|.+.+.|..|...|+|..+...+..+|++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-----chhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 445789999999999999999999999998876665432 33 999999999999999999999998888888888
Q ss_pred cccccCCCC--------------------------------------------------------cccCC--CCceEEEC
Q 013061 193 WATFSGSDR--------------------------------------------------------RTEAC--SDLSIFVG 214 (450)
Q Consensus 193 ~~~~~~~~~--------------------------------------------------------~~~~~--~~~~l~v~ 214 (450)
+++-..... ..... .+..|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 775210000 00001 14678888
Q ss_pred CCC-CCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCc
Q 013061 215 DLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (450)
Q Consensus 215 nl~-~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~ 293 (450)
||. ..+|.+.|..+|+ .||+|.+|+|+.++. -.|+|++.+...|..|++.|+|..+.|+.|+|.+++......
T Consensus 304 nln~~~VT~d~LftlFg-vYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFG-VYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cCchhccchhHHHHHHh-hhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 885 4589999999996 999999999998853 369999999999999999999999999999999998654332
Q ss_pred ccccchhhhhhhcCCCCCCCCcc----cCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEE-EEe-eCCCcEEE
Q 013061 294 YQQQYSSQALVLAGGPGSNGARV----QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKI-PVGKGCGF 367 (450)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~-v~i-~~~~g~af 367 (450)
..+..++..+..-... ++-... ........+++.+|+++|+|.++++|+|+++|..-|.+.+ .++ ..++.+|+
T Consensus 378 p~egq~d~glT~dy~~-spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGN-SPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCccccccccCCC-CchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 2222111111110000 000000 1111223467889999999999999999999988776644 443 34789999
Q ss_pred EEeecCHHHHHHHHHHhcCCeeCC-eEEEEEeccC
Q 013061 368 VQFANSRKDAEVALQKLQGTAIGK-QTVRLSWGRN 401 (450)
Q Consensus 368 V~F~~~~~~A~~A~~~l~g~~~~g-~~l~v~~~~~ 401 (450)
+.+.+ .++|..|+..+|.+.+++ ..|+|+|+|.
T Consensus 457 ~q~~s-veeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLES-VEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCC-hhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999 999999999999999985 5999999985
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=5.5e-24 Score=184.80 Aligned_cols=149 Identities=23% Similarity=0.464 Sum_probs=135.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
-+|||+|||..+++.+|+.+|++||.|++|.|+++ |+||..++...|+.|+..|++..| .+..|+|+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEecc
Confidence 37999999999999999999999999999999985 899999999999999999999999 45666665554
Q ss_pred ccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 013061 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 275 (450)
.+ +..+.+|+|+||.+.++..||++.| ++||+|.++.|++| |+||.|+..++|..|++.|++.+
T Consensus 73 sK-------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cc-------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 22 4567899999999999999999999 69999999999966 99999999999999999999999
Q ss_pred ecCccEEEeecCCCC
Q 013061 276 CSSRPMRIDVATPKK 290 (450)
Q Consensus 276 ~~g~~i~v~~~~~~~ 290 (450)
|.|+.++|..++.+-
T Consensus 137 ~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRL 151 (346)
T ss_pred cccceeeeeeecccc
Confidence 999999999987653
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=188.82 Aligned_cols=174 Identities=26% Similarity=0.458 Sum_probs=147.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
..++|||++|+|++++|.|+++|..||+|.+|.+++|+.+++++||+||+|.+++...++|.. ....+ .++.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc--CCcccccee
Confidence 788999999999999999999999999999999999999999999999999999999999854 33334 234444433
Q ss_pred ccccCCCCc-ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 013061 194 ATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (450)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 272 (450)
+.+.....+ .......+|||++||.+++++++++.| +.||.|.++.++.|..+.+++|++||.|.+++++.+++. +.
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceecc-cc
Confidence 333222111 122256799999999999999999999 699999999999999999999999999999999999985 77
Q ss_pred CceecCccEEEeecCCCCCC
Q 013061 273 GVYCSSRPMRIDVATPKKAS 292 (450)
Q Consensus 273 ~~~~~g~~i~v~~~~~~~~~ 292 (450)
-+.|+++.+.|..+.++...
T Consensus 160 f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eeeecCceeeEeeccchhhc
Confidence 78899999999999998764
No 41
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=9.1e-20 Score=163.64 Aligned_cols=280 Identities=17% Similarity=0.209 Sum_probs=203.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
....+..|.|++|-..++|.||.+.++.||.|.-+.++..+. .|.|+|++.+.|+.++.......+...+...-
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhh
Confidence 345677999999999999999999999999998888777653 69999999999999997544444433444443
Q ss_pred eccccccCCCCc--ccCCCCceEEEC--CCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013061 191 LNWATFSGSDRR--TEACSDLSIFVG--DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 191 ~~~~~~~~~~~~--~~~~~~~~l~v~--nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
+.++......++ ....++..|.+. |--+.+|.+-|..++ ...|.|.+|.|++.. + --|.|+|++.+.|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfkkn--g---VQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEecc--c---eeeEEeechhHHHHH
Confidence 444432222222 223344455444 445679999999999 599999999998762 2 369999999999999
Q ss_pred HHHHhCCcee--cCccEEEeecCCCCCCcccccch---------------------hh---------hhhhcCCC---CC
Q 013061 267 AMTEMNGVYC--SSRPMRIDVATPKKASGYQQQYS---------------------SQ---------ALVLAGGP---GS 311 (450)
Q Consensus 267 A~~~l~~~~~--~g~~i~v~~~~~~~~~~~~~~~~---------------------~~---------~~~~~~~~---~~ 311 (450)
|...|||-.| +-..|+|+++++.+..-.++... .. .....++. .+
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999887 45678999998765322111100 00 00000000 00
Q ss_pred -----C-C---Cc--------ccCCCCCCCCCCcEEEEecCCCC-CCHHHHHHhccccCceEEEEeeCC-CcEEEEEeec
Q 013061 312 -----N-G---AR--------VQGSQSDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFAN 372 (450)
Q Consensus 312 -----~-~---~~--------~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~v~i~~~-~g~afV~F~~ 372 (450)
+ . ++ .....+......+++.|.+|.-. ++.+.|.++|-.||.|++|++++. .+.|+|++.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 0 0 00 01112234456789999999866 788999999999999999999886 5999999999
Q ss_pred CHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 373 SRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 373 ~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
..+.++|+..||+..+-|.+|.|.+++-..
T Consensus 335 -~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 335 -AYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred -HHHHHHHHHHhccCccccceEEEeeccccc
Confidence 999999999999999999999999998654
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.3e-21 Score=166.35 Aligned_cols=195 Identities=26% Similarity=0.459 Sum_probs=151.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---cCccEEE
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPMRI 283 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~v 283 (450)
.+++|||+.|.+.-+|||++.+| ..||.|+++.+++..+ |.+||++||.|.+..+|..||+.|++... -...+.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf-~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLF-QPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHh-cccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 67899999999999999999999 4999999999999876 89999999999999999999999998653 3568999
Q ss_pred eecCCCCCCcccccchh---------------------------hh--hhhcCCC-------------------------
Q 013061 284 DVATPKKASGYQQQYSS---------------------------QA--LVLAGGP------------------------- 309 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~---------------------------~~--~~~~~~~------------------------- 309 (450)
++++..+++..+.-... .. +....++
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 99987764432210000 00 0000000
Q ss_pred -----------------------------------------C------------------CC------------------
Q 013061 310 -----------------------------------------G------------------SN------------------ 312 (450)
Q Consensus 310 -----------------------------------------~------------------~~------------------ 312 (450)
+ +.
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence 0 00
Q ss_pred -----------C----CcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEee
Q 013061 313 -----------G----ARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFA 371 (450)
Q Consensus 313 -----------~----~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~ 371 (450)
. ...........++.|.|||-.||.+..+.+|...|-.||.|++.++..| |+|+||.|+
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 0 0000001123467899999999999999999999999999998877653 789999999
Q ss_pred cCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 372 NSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 372 ~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
| ..+|..||.+|||+.|+-++|+|.+.+++..
T Consensus 336 N-p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 336 N-PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred C-chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9 9999999999999999999999999998763
No 43
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=6.4e-21 Score=182.69 Aligned_cols=270 Identities=21% Similarity=0.354 Sum_probs=200.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc-----------C-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcC
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----------G-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 179 (450)
....+.++|+++|+.++++.+..+|..- | .++.|.+...+ .|||++|.+.+.|..|+ .+++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-ALDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-cccc
Confidence 3456789999999999999999999654 2 36677666655 49999999999999999 5677
Q ss_pred CCCCCCCCcceecccccc------------------CCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEE
Q 013061 180 SLMPNTDQPFRLNWATFS------------------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (450)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~------------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~ 241 (450)
..+.+ .++++...... ...........++++|++||..++++.++|++ +.||++....+
T Consensus 245 ~~f~g--~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~l 321 (500)
T KOG0120|consen 245 IIFEG--RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFRL 321 (500)
T ss_pred hhhCC--CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchhhee
Confidence 77644 33333222211 01112333455789999999999999999999 59999999999
Q ss_pred eecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCC
Q 013061 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQS 321 (450)
Q Consensus 242 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (450)
+.|..++.++||||.+|.+......|+..|||..+.++.+.|..+-............... ...........
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~--------~~~~i~~~~~q 393 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS--------QVPGIPLLMTQ 393 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc--------ccccchhhhcc
Confidence 9999999999999999999999999999999999999999999887654432221110000 00000000012
Q ss_pred CCCCCCcEEEEecC--CCC--------CCHHHHHHhccccCceEEEEeeCC---------CcEEEEEeecCHHHHHHHHH
Q 013061 322 DGESNNATIFVGAL--DSD--------VSDEDLREPFSQFGEILSVKIPVG---------KGCGFVQFANSRKDAEVALQ 382 (450)
Q Consensus 322 ~~~~~~~~l~V~nl--p~~--------~t~~~L~~~F~~~G~v~~v~i~~~---------~g~afV~F~~~~~~A~~A~~ 382 (450)
....+..+|.+.|+ |.+ ...|+|+..|.+||.|.+|.|.+. .|..||+|.+ .+++.+|++
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas-~ed~qrA~~ 472 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFAD-TEDSQRAME 472 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecC-hHHHHHHHH
Confidence 22334445555544 111 124667788999999999999874 4899999999 999999999
Q ss_pred HhcCCeeCCeEEEEEecc
Q 013061 383 KLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 383 ~l~g~~~~g~~l~v~~~~ 400 (450)
.|+|+.|.||.|..+|--
T Consensus 473 ~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 473 ELTGRKFANRTVVASYYD 490 (500)
T ss_pred HccCceeCCcEEEEEecC
Confidence 999999999999999854
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=4.7e-21 Score=164.50 Aligned_cols=178 Identities=25% Similarity=0.459 Sum_probs=152.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCC-CCCCCCcce
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~~~~~i~ 190 (450)
..+.|+|||+-|...-+|||++.+|..||.|.+|.+.+.. .|.+||||||+|.+..+|..||..|+|.. +.+....+-
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3477899999999999999999999999999999999986 59999999999999999999999999864 555555555
Q ss_pred eccccccCCCC---------------------------------------------------------------------
Q 013061 191 LNWATFSGSDR--------------------------------------------------------------------- 201 (450)
Q Consensus 191 ~~~~~~~~~~~--------------------------------------------------------------------- 201 (450)
|+++..+++..
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 55554210000
Q ss_pred --------------------------------------------------------------------------------
Q 013061 202 -------------------------------------------------------------------------------- 201 (450)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (450)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred ------------------------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEE
Q 013061 202 ------------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257 (450)
Q Consensus 202 ------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~ 257 (450)
..+....+.|||-.||.+..+.||...|. .||.|.+.+++.|+.|+.+|+|+||.
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeEe
Confidence 00113457899999999999999999996 99999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceecCccEEEeecCCCCC
Q 013061 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 258 f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 291 (450)
|++..+|.+||..+||+.|+=++++|.+..++..
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999998888754
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.5e-20 Score=166.75 Aligned_cols=172 Identities=22% Similarity=0.456 Sum_probs=146.0
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
++|||+.+.+++.|+.|+..| ..||+|++|.+..|+-|+++||||||+|+-.|.|..|++.+|+..++||.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 579999999999999999999 5999999999999999999999999999999999999999999999999999984332
Q ss_pred CCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------
Q 013061 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------ 362 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------ 362 (450)
-... +...... ......-++|||..+..+.+++||+.+|+-||.|.+|.+.++
T Consensus 193 mpQA--QpiID~v-------------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 193 MPQA--QPIIDMV-------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred Cccc--chHHHHH-------------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 1110 0000000 001122468999999999999999999999999999999864
Q ss_pred CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 363 KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 363 ~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
+|++||+|.+ ......|+..||-+.++|..|+|.-+-.+.
T Consensus 252 kGyGfiEy~n-~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 252 KGYGFIEYNN-LQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred cceeeEEecc-ccchHHHhhhcchhhcccceEecccccCCC
Confidence 7999999999 899999999999999999999998776544
No 46
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.83 E-value=4.6e-18 Score=152.78 Aligned_cols=276 Identities=18% Similarity=0.185 Sum_probs=211.1
Q ss_pred CceEEEcCCC--CCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 115 TKTIWIGDLF--HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 115 ~~~l~V~nLp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...|.+.=|. +.+|.+.|..++...|.|.+|.|++. +| --|.|||++.+.|++|...|||-.+...+.+++|+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 3445544444 68999999999999999999999875 33 36999999999999999999999998888899998
Q ss_pred cccccCCCC---------------------------c-------------------------------------------
Q 013061 193 WATFSGSDR---------------------------R------------------------------------------- 202 (450)
Q Consensus 193 ~~~~~~~~~---------------------------~------------------------------------------- 202 (450)
++++..... +
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 887431000 0
Q ss_pred -------ccCCCCceEEECCCCCC-CCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 013061 203 -------TEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (450)
Q Consensus 203 -------~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 274 (450)
....+...++|-+|... +.-+.|..+|. .||.|++|++++.+. |.|.|+..+....++|+..||+.
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~C-lYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFC-LYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhh-hcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccC
Confidence 00022356888888764 56778999996 999999999998753 68999999999999999999999
Q ss_pred eecCccEEEeecCCCCCCc-----ccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhcc
Q 013061 275 YCSSRPMRIDVATPKKASG-----YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (450)
Q Consensus 275 ~~~g~~i~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~ 349 (450)
.+.|.+|.|.+++...... ......+........................+++++|...|.|..+||+.|.++|.
T Consensus 349 ~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred ccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 9999999999987554322 11222222233333333334444556667788999999999999999999999997
Q ss_pred ccCc-eEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCC------eEEEEEeccCC
Q 013061 350 QFGE-ILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGK------QTVRLSWGRNP 402 (450)
Q Consensus 350 ~~G~-v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g------~~l~v~~~~~~ 402 (450)
..+. ..+|+|... ...+.++|++ .++|..|+.++|...+.+ -.|++-|+.++
T Consensus 429 ek~v~~~svkvFp~kserSssGllEfe~-~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 429 EKDVPPTSVKVFPLKSERSSSGLLEFEN-KSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred hcCCCcceEEeecccccccccceeeeeh-HHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 6543 366666653 3688999999 999999999999999875 35777777764
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=3.9e-20 Score=179.45 Aligned_cols=174 Identities=18% Similarity=0.351 Sum_probs=144.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCC---CCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
+|||.||++++|.++|..+|...|.|.+|.|...+.. --|.||+||+|.++++|..|++.|+|+.+.+....+++..
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988776532 1256999999999999999999999999966555555544
Q ss_pred ccccCCCCc--ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 013061 194 ATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (450)
Q Consensus 194 ~~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 271 (450)
..+.....+ ......++|+|.|||+..+..+|+++|. .||.|.+|+|......+.++|+|||+|-+..+|..|++.|
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 111111111 1122246899999999999999999995 9999999999988666778999999999999999999999
Q ss_pred CCceecCccEEEeecCCCCC
Q 013061 272 NGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 272 ~~~~~~g~~i~v~~~~~~~~ 291 (450)
....+.||.+.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999987643
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=1.3e-19 Score=165.92 Aligned_cols=169 Identities=24% Similarity=0.414 Sum_probs=146.3
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
...+|||++|++++++|.|++.|+ .||+|.++.+++|+.+++++|++||+|++.+...+++. ...+.|+++.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 567999999999999999999995 99999999999999999999999999999999999886 5567789999999999
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
.++..... .......++|||+.||.++++++|+++|++||.|.++.++.+
T Consensus 83 v~r~~~~~--------------------------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 83 VSREDQTK--------------------------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS 136 (311)
T ss_pred cCcccccc--------------------------cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc
Confidence 88765421 112226789999999999999999999999999999888764
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 405 (450)
++++||+|.+ ++.+.+++. ..-+.|.++.+.|.-+.++...
T Consensus 137 ~~rgFgfv~~~~-e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 137 RPRGFGFVTFDS-EDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccccceeeEecc-ccccceecc-cceeeecCceeeEeeccchhhc
Confidence 6999999998 777777766 6788899999999988875533
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.7e-18 Score=143.29 Aligned_cols=83 Identities=24% Similarity=0.539 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
.....+++|||+|||+++++++|+++|++||.|.+|+|+.+ +++|||+|.+ .++|.+|++.||+..|+|+.|+
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~-~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND-EGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECC-HHHHHHHHHHcCCCEECCEEEE
Confidence 33456779999999999999999999999999999999753 6999999999 9999999999999999999999
Q ss_pred EEeccCCCCC
Q 013061 396 LSWGRNPGNK 405 (450)
Q Consensus 396 v~~~~~~~~~ 405 (450)
|+|++++...
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999876543
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=5.9e-18 Score=143.63 Aligned_cols=190 Identities=22% Similarity=0.349 Sum_probs=147.4
Q ss_pred CCCceEEECCCCCCCCHHHHHH----HHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~----~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
.++.+|||.||+..+..++|++ +|+ .||.|.+|...+ +.+.+|-|||.|.+.+.|..|+..|+|..|.|+++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 3455999999999999999988 995 999999998874 57789999999999999999999999999999999
Q ss_pred EEeecCCCCCCccccc------c---hhhh-------hhhcCCCC-CCCCcccCC-CCCCCCCCcEEEEecCCCCCCHHH
Q 013061 282 RIDVATPKKASGYQQQ------Y---SSQA-------LVLAGGPG-SNGARVQGS-QSDGESNNATIFVGALDSDVSDED 343 (450)
Q Consensus 282 ~v~~~~~~~~~~~~~~------~---~~~~-------~~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~V~nlp~~~t~~~ 343 (450)
+|.|+..+.....+.. . .... ....+... .+....... .....++..++|+.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 9999976543221100 0 0000 00000000 000001111 134467788999999999999999
Q ss_pred HHHhccccCceEEEEeeCC-CcEEEEEeecCHHHHHHHHHHhcCCeeC-CeEEEEEecc
Q 013061 344 LREPFSQFGEILSVKIPVG-KGCGFVQFANSRKDAEVALQKLQGTAIG-KQTVRLSWGR 400 (450)
Q Consensus 344 L~~~F~~~G~v~~v~i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 400 (450)
|..+|.+|.....|+++.. ++.|||+|.+ ...|..|...|.+..+- ...++|.|++
T Consensus 163 l~~lf~qf~g~keir~i~~~~~iAfve~~~-d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRSGIAFVEFLS-DRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCCceeEEecch-hhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999998885 6899999999 88889999999999887 8999999876
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.1e-17 Score=136.07 Aligned_cols=173 Identities=18% Similarity=0.343 Sum_probs=134.8
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
..++.|||+|||.++.+.||.++|. +||.|..|.+... .....||||+|++..+|+.||.--++..+++..|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3567899999999999999999996 9999999988643 33456999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcE
Q 013061 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGC 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~ 365 (450)
+..........- .. ........................|.|++||.+-+|.||++++.+-|.|-...+.++ +.
T Consensus 80 prggr~s~~~~G-----~y-~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRG-----SY-SGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GV 152 (241)
T ss_pred ccCCCccccccc-----cc-CCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cc
Confidence 876542211000 00 001111111111222333444568999999999999999999999999999888876 69
Q ss_pred EEEEeecCHHHHHHHHHHhcCCeeC
Q 013061 366 GFVQFANSRKDAEVALQKLQGTAIG 390 (450)
Q Consensus 366 afV~F~~~~~~A~~A~~~l~g~~~~ 390 (450)
+.|+|.. .++.+-|+.+|....+.
T Consensus 153 GvV~~~r-~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 153 GVVEYLR-KEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeee-hhhHHHHHHhhcccccc
Confidence 9999999 99999999999988775
No 52
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=6.7e-19 Score=158.62 Aligned_cols=281 Identities=16% Similarity=0.150 Sum_probs=192.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
.++...|..++|||..++.+|..+|+-.-...-.+.+.....|+..|++.|.|.|.|.-+.|++. +...+ ..+.+.+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryiev 133 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIEV 133 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCceee
Confidence 35566789999999999999999998764444445555556788999999999999999999975 33333 2445554
Q ss_pred ccccccC---------C--CCcccCCCCceEEECCCCCCCCHHHHHHHHhh---cCCCeeEEEEeecCCCCCceeEEEEE
Q 013061 192 NWATFSG---------S--DRRTEACSDLSIFVGDLAPDVTDSILQETFSS---KYPSVKGAKVIIDSNTGRTKGYGFVR 257 (450)
Q Consensus 192 ~~~~~~~---------~--~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~---~~g~i~~v~~~~~~~~~~~~g~afV~ 257 (450)
-.+..++ . ........-..|.+++||+++++.|+.++|.. ..+..+.|.+++..+ |+..|-|||.
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvl 212 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVL 212 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEE
Confidence 4333221 1 11111123446778999999999999999941 234566676666644 8999999999
Q ss_pred eCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCc-ccCCCCCCCCCCcEEEEecCC
Q 013061 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGAR-VQGSQSDGESNNATIFVGALD 336 (450)
Q Consensus 258 f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp 336 (450)
|..+++|..|+. .|...++-|.|++-.++..+.....+......+. ....+.... .............+|.+++||
T Consensus 213 fa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi--~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 213 FACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLI--PGLTSPLLPGGPARLVPPTRSKDCVRLRGLP 289 (508)
T ss_pred ecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhcccccc--CCCCCCCCCCCccccCCCCCCCCeeEecCCC
Confidence 999999999996 5556677788877766543321111111111111 111111111 011122223336799999999
Q ss_pred CCCCHHHHHHhccccCc-eEE--EEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 337 SDVSDEDLREPFSQFGE-ILS--VKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 337 ~~~t~~~L~~~F~~~G~-v~~--v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
+..+.|+|.+||..|-. |.. |++.-+ .|.|||+|.+ .++|..|..+-|++.++.|.|.|--+.
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~n-ae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRN-AERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhh-hHHHHHHHHHHHHhhcccceEEEeecc
Confidence 99999999999998853 333 555532 5899999999 999999999999998999999997665
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=1e-18 Score=165.24 Aligned_cols=175 Identities=26% Similarity=0.436 Sum_probs=144.7
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...+++|+--|....++-+|.++|+ .+|.|.+|.++.|..+++++|.+||+|.+.+....||. |.|..+.|.+|.|..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs-~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFS-IVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHH-hhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3456788888888999999999995 99999999999999999999999999999999999994 999999999999987
Q ss_pred cCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---
Q 013061 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--- 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--- 362 (450)
....+... . +......... ...+-..|||+||...+++++|+.+|+.||.|..|.+..+
T Consensus 255 sEaeknr~---a--------------~~s~a~~~k~-~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t 316 (549)
T KOG0147|consen 255 SEAEKNRA---A--------------NASPALQGKG-FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET 316 (549)
T ss_pred cHHHHHHH---H--------------hccccccccc-cccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccc
Confidence 76543321 0 0000000000 1111222999999999999999999999999999998865
Q ss_pred ---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 363 ---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 363 ---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
+||+||+|.+ .++|++|++.|||.+|.|+.|+|.....
T Consensus 317 G~skgfGfi~f~~-~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 317 GRSKGFGFITFVN-KEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred ccccCcceEEEec-HHHHHHHHHHhccceecCceEEEEEeee
Confidence 6999999999 9999999999999999999999987664
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=2.8e-17 Score=133.85 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=125.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...+++|||+|||.++.+.||+++|.+||.|.+|.+...+ ..-.||||+|+++.+|+.|+..-+|..+. +..++|
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdyd--g~rLRV 77 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYD--GCRLRV 77 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccC--cceEEE
Confidence 3578999999999999999999999999999999885532 34579999999999999999999999884 455666
Q ss_pred ccccccCC--CC-------------------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCc
Q 013061 192 NWATFSGS--DR-------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRT 250 (450)
Q Consensus 192 ~~~~~~~~--~~-------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~ 250 (450)
.++..... .. .........|.|.+||++-++.||++... .-|+|-...+.+|
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------ 150 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc------
Confidence 66553211 00 12234456799999999999999999995 8999988888877
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCcee
Q 013061 251 KGYGFVRFGDENERSRAMTEMNGVYC 276 (450)
Q Consensus 251 ~g~afV~f~~~~~a~~A~~~l~~~~~ 276 (450)
|++.|+|...++.+-|+.+|+...+
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccccc
Confidence 3799999999999999999987665
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=8.4e-17 Score=136.63 Aligned_cols=163 Identities=22% Similarity=0.402 Sum_probs=136.6
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 114 ETKTIWIGDLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
+..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+ .+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchh
Confidence 334999999999999999998 999999999998876 467899999999999999999999999999 56777
Q ss_pred eeccccccCCCC---------------------------------------------cccCCCCceEEECCCCCCCCHHH
Q 013061 190 RLNWATFSGSDR---------------------------------------------RTEACSDLSIFVGDLAPDVTDSI 224 (450)
Q Consensus 190 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l~v~nl~~~~t~~~ 224 (450)
++.+++.+.... .....++..|++.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 777776432100 01145677899999999999999
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec-CccEEEeecC
Q 013061 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (450)
Q Consensus 225 l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~~~ 287 (450)
+..+| +.|....+|+++... ++.|||+|.++..|..|...+.+..|. ...+.|.+++
T Consensus 163 l~~lf-~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLF-EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHH-hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999 599999999988653 469999999999999999999998885 7777777664
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=3.6e-16 Score=143.41 Aligned_cols=197 Identities=18% Similarity=0.328 Sum_probs=148.3
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...+.+||+|||+++.+.+|+++|.++-|+|+.|.++.|. .++++|+|.|+|+++|.+++|++.||.+.+.+|+|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3455699999999999999999999999999999999995 499999999999999999999999999999999999986
Q ss_pred cCCCCCCcccccc-------------------------------------hhhhhhhcCCC----------------CCC
Q 013061 286 ATPKKASGYQQQY-------------------------------------SSQALVLAGGP----------------GSN 312 (450)
Q Consensus 286 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~----------------~~~ 312 (450)
........+-..- ....+....+. +..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 5442111000000 00000000000 000
Q ss_pred CCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC-----CCcEEEEEeecCHHHHHHHHHHhcCC
Q 013061 313 GARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-----GKGCGFVQFANSRKDAEVALQKLQGT 387 (450)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~-----~~g~afV~F~~~~~~A~~A~~~l~g~ 387 (450)
......-.....+....+||.||.+.+..+.|++.|.--|.|+.|.+.- ++++|.++|++ +-+|..|+.+|++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~h-pveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDH-PVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecc-hHHHHHHHHhhccC
Confidence 0000111112345567899999999999999999999999999887754 36999999999 99999999999998
Q ss_pred eeCCeEEEEEeccCCCC
Q 013061 388 AIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 388 ~~~g~~l~v~~~~~~~~ 404 (450)
-+.+++..+.+.+-+.+
T Consensus 280 g~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRIPDR 296 (608)
T ss_pred CCccccceeeccccccc
Confidence 88889999988775443
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.1e-16 Score=132.62 Aligned_cols=84 Identities=32% Similarity=0.536 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...+++|||+|||+++|+++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.|++..+ .++.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 34677999999999999999999999999999999999999999999999999999999999999999988 5678888
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.|+...
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 887644
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=2.4e-15 Score=140.81 Aligned_cols=167 Identities=19% Similarity=0.328 Sum_probs=130.6
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
.....|.+.+||+++|++||+++|+ ..+ |+++.+.+. +|+..|-|||+|.+++++.+|++ .+...+..|.|.|-.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~-~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFS-NCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHh-cCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 3445788999999999999999995 554 787666554 58999999999999999999996 777889999999998
Q ss_pred cCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEE-EEeeCC--
Q 013061 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIPVG-- 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~-v~i~~~-- 362 (450)
+........-.. .......+..+|.+.+||+.+|++||.+||+..-.|.+ |.++.+
T Consensus 83 ~~~~e~d~~~~~---------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 83 AGGAEADWVMRP---------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred cCCccccccccC---------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 877655321110 00111135568999999999999999999998766655 333332
Q ss_pred ---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 363 ---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 363 ---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
.+.|||.|++ .+.|++|+.. |...|..|.|.|--+.
T Consensus 142 gR~tGEAfVqF~s-qe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 142 GRPTGEAFVQFES-QESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCcccceEEEecC-HHHHHHHHHH-HHHhhccceEEeehhH
Confidence 5899999999 9999999985 7778888888887544
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.3e-16 Score=132.91 Aligned_cols=166 Identities=23% Similarity=0.421 Sum_probs=134.1
Q ss_pred eEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCC
Q 013061 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 210 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 289 (450)
.+||++||+.+.+.+|.++| ..||.|.++.+. .||+||+|.+..+|..|+..|++..|.+..+.|+++...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFF-KGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHH-hhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 68999999999999999999 599999998775 358899999999999999999999999888888888764
Q ss_pred CCCcccccchhhhhhhcCCCCCCCCc-ccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEE
Q 013061 290 KASGYQQQYSSQALVLAGGPGSNGAR-VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFV 368 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV 368 (450)
.... +.+....-. ............+.|.|.++...+.+.+|.++|..+|.+....+ ..+++||
T Consensus 74 ~~~~-------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v 138 (216)
T KOG0106|consen 74 RRGR-------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFV 138 (216)
T ss_pred cccc-------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccce
Confidence 3221 011100000 01122233456678999999999999999999999999966655 4789999
Q ss_pred EeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 369 QFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 369 ~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
+|++ .++|.+|+..|++..+.++.|.+...-
T Consensus 139 ~Fs~-~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 139 EFSE-QEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred eehh-hhhhhhcchhccchhhcCceeeecccC
Confidence 9999 999999999999999999999994433
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.6e-14 Score=129.31 Aligned_cols=190 Identities=18% Similarity=0.228 Sum_probs=140.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 276 (450)
...+..|||.|||.++|.+++.++|+ .+|.|.+ |+++++.. |..+|-|+|.|...+++..|+..|++..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 44566799999999999999999996 8887753 88888865 99999999999999999999999999999
Q ss_pred cCccEEEeecCCCCCCccc--------ccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCC--CC--CC----
Q 013061 277 SSRPMRIDVATPKKASGYQ--------QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALD--SD--VS---- 340 (450)
Q Consensus 277 ~g~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp--~~--~t---- 340 (450)
.|+.|+|+.+.-....... ............. .................++|.+.||= .. .+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k--~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQK--LLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHh--hcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 9999999988643211100 0000000000000 00011111223344556788888882 11 12
Q ss_pred ---HHHHHHhccccCceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 341 ---DEDLREPFSQFGEILSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 341 ---~~~L~~~F~~~G~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
.++|++.+++||.|.+|.|.. ..|.+-|.|.+ .++|..++..|+|+.|+||.|..+.-
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n-~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRN-NEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCC-hHHHHHHHHHhcCeeecceEEEEEEe
Confidence 477888899999999999884 46999999999 99999999999999999999988754
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.63 E-value=6.3e-15 Score=123.86 Aligned_cols=184 Identities=21% Similarity=0.369 Sum_probs=126.9
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeec-CCCCCceeEEEEEeCCHHHHHHHHHHhCCceec---Ccc
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SRP 280 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~ 280 (450)
...-++|||.+||.++...||..+|. .|-..+...+... +...-++-+|||+|.+..+|.+|++.|||..|+ +..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34568999999999999999999995 7777777655533 222335679999999999999999999999984 678
Q ss_pred EEEeecCCCCCCcccc--cch--hhhhhhcC------------------CC-------CCCC------------------
Q 013061 281 MRIDVATPKKASGYQQ--QYS--SQALVLAG------------------GP-------GSNG------------------ 313 (450)
Q Consensus 281 i~v~~~~~~~~~~~~~--~~~--~~~~~~~~------------------~~-------~~~~------------------ 313 (450)
++|++++......... ..+ ...+.... .+ ....
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 8888876432211111 000 00000000 00 0000
Q ss_pred -Ccc------cCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHh
Q 013061 314 -ARV------QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANSRKDAEVALQKL 384 (450)
Q Consensus 314 -~~~------~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l 384 (450)
... ..........+.+|||.||...++||+|+.+|+.|-....++|.. +...||++|++ .+.|..|+..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~-~~~at~am~~l 268 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEE-IEQATDAMNHL 268 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHH-HHHHHHHHHHh
Confidence 000 000012233467999999999999999999999997766666654 45799999999 99999999999
Q ss_pred cCCeeC
Q 013061 385 QGTAIG 390 (450)
Q Consensus 385 ~g~~~~ 390 (450)
.|..|-
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 998764
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=3.3e-14 Score=127.29 Aligned_cols=172 Identities=17% Similarity=0.291 Sum_probs=137.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCce--------EEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
.......|||.|||.++|.+++.++|++||.|. .|++.++.. |..+|-|++.|.-.++++.|+..|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 344556799999999999999999999999654 578888864 99999999999999999999999999999
Q ss_pred CCCCCcceeccccccC---------------------------------CCCcccCCCCceEEECCCC----CCCC----
Q 013061 183 PNTDQPFRLNWATFSG---------------------------------SDRRTEACSDLSIFVGDLA----PDVT---- 221 (450)
Q Consensus 183 ~~~~~~i~~~~~~~~~---------------------------------~~~~~~~~~~~~l~v~nl~----~~~t---- 221 (450)
++..|+|..+++.. ..........++|.+.|+= ...+
T Consensus 209 --rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 209 --RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred --cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 57788887776321 0011223445788888872 1222
Q ss_pred ---HHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCC
Q 013061 222 ---DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 222 ---~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 290 (450)
.++|.+.+ ++||.|..|.|.-. .+.|.+.|.|.+.++|..||..|+|+.|+||.|...+.+.+.
T Consensus 287 ~dlkedl~eec-~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 287 NDLKEDLTEEC-EKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHH-HHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 35677888 49999999987743 357899999999999999999999999999999999887654
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5.7e-16 Score=133.18 Aligned_cols=152 Identities=19% Similarity=0.352 Sum_probs=126.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
..|||++||+.+.+.+|+.||..||.+.+|.+.. ||+||+|.+..+|..|+..|+++.|.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4799999999999999999999999999998754 58999999999999999999999996655 6666666
Q ss_pred ccC---------------CCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q 013061 196 FSG---------------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (450)
Q Consensus 196 ~~~---------------~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~ 260 (450)
... ............+.|.+++..+.+.+|.+.|+ .+|.+....+ ..+.+||+|.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 311 11112244567899999999999999999995 9999855444 24589999999
Q ss_pred HHHHHHHHHHhCCceecCccEEEeec
Q 013061 261 ENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 261 ~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
.++|..|+..|++..+.++.|++...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=121.67 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=122.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEe-cCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC-CCCc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQP 188 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-~~~~ 188 (450)
.....|||||.+||.++...||..+|..|-..+.+.+.. ++.....+.+|||.|.+..+|..|+..|||..|.- ....
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 345689999999999999999999999997777766643 33333456899999999999999999999988743 4556
Q ss_pred ceeccccccCCCCccc----------------------------------------------------------------
Q 013061 189 FRLNWATFSGSDRRTE---------------------------------------------------------------- 204 (450)
Q Consensus 189 i~~~~~~~~~~~~~~~---------------------------------------------------------------- 204 (450)
++++.++......+..
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 6666665321111000
Q ss_pred -----------------CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013061 205 -----------------ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (450)
Q Consensus 205 -----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A 267 (450)
...-.+|||.||..+++|++|+.+|+ .|.....++|... .| ...||++|.+.+.|..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR--GG--MPVAFADFEEIEQATDA 264 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC--CC--cceEeecHHHHHHHHHH
Confidence 00113799999999999999999995 8887776665422 13 34899999999999999
Q ss_pred HHHhCCcee
Q 013061 268 MTEMNGVYC 276 (450)
Q Consensus 268 ~~~l~~~~~ 276 (450)
+..|.|..|
T Consensus 265 m~~lqg~~~ 273 (284)
T KOG1457|consen 265 MNHLQGNLL 273 (284)
T ss_pred HHHhhccee
Confidence 999998776
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.4e-15 Score=125.81 Aligned_cols=83 Identities=30% Similarity=0.484 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.+..+|.|.||+.+++|++|++||.+||.|.+|.+.+|++||.++|||||.|.+.++|.+|++.|||.-+ ..+-++|.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEEE
Confidence 4788999999999999999999999999999999999999999999999999999999999999999888 56788999
Q ss_pred ccccc
Q 013061 193 WATFS 197 (450)
Q Consensus 193 ~~~~~ 197 (450)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 98754
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=127.15 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=69.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.+..-++|||++|+|+++.|+|+++|++||+|++..|+.|+.+||||||+||+|+|.++|++|++. -.-.|.+ |..+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdG--R~aN 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDG--RKAN 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccc--cccc
Confidence 344567899999999999999999999999999999999999999999999999999999999975 3344544 4444
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
+..+.
T Consensus 85 cnlA~ 89 (247)
T KOG0149|consen 85 CNLAS 89 (247)
T ss_pred cchhh
Confidence 44443
No 67
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=9.4e-15 Score=118.48 Aligned_cols=82 Identities=28% Similarity=0.504 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
...++|||+||+..+++.||..+|..||.|..|.|... .+||||+|++ ..+|..|+..|+|+.|+|..|+|++++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed-~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFED-PRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccC-cccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 34689999999999999999999999999999988765 6999999999 999999999999999999999999999766
Q ss_pred CCCC
Q 013061 404 NKQW 407 (450)
Q Consensus 404 ~~~~ 407 (450)
....
T Consensus 87 r~~r 90 (195)
T KOG0107|consen 87 RGSR 90 (195)
T ss_pred cccc
Confidence 5443
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.5e-15 Score=113.68 Aligned_cols=82 Identities=28% Similarity=0.565 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...+++|||+||++.++||.|.++|+++|+|..|.+-.|+.+....|||||+|.+.++|+.|++.+++..+ ..++|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999 6788888
Q ss_pred cccc
Q 013061 192 NWAT 195 (450)
Q Consensus 192 ~~~~ 195 (450)
+|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7765
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2e-14 Score=104.46 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 118 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
|||+|||+++|+++|+++|+.||.|..+.+..+ .+++.+++|||+|.+.++|++|++.+++..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 578999999999999999999999999988743
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.4e-14 Score=127.28 Aligned_cols=83 Identities=29% Similarity=0.471 Sum_probs=75.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 320 ~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
.+......++|+|+|||+...+-||+.+|++||+|.+|+|+.+ |||+||+|++ .+||++|.++|||..+.||+|.
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen-~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMEN-PADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecC-hhhHHHHHHHhhcceeeceEEE
Confidence 3445567789999999999999999999999999999999863 7999999999 9999999999999999999999
Q ss_pred EEeccCCC
Q 013061 396 LSWGRNPG 403 (450)
Q Consensus 396 v~~~~~~~ 403 (450)
|..++.+-
T Consensus 168 Vn~ATarV 175 (376)
T KOG0125|consen 168 VNNATARV 175 (376)
T ss_pred Eeccchhh
Confidence 99988643
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.5e-14 Score=121.36 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=80.0
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
...+++|.|.||+.++++++|.++| .+||.|.++.|.+|++||.++|||||.|.+.++|.+||+.|||.-++.--|+|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3467889999999999999999999 599999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 013061 285 VATPK 289 (450)
Q Consensus 285 ~~~~~ 289 (450)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99885
No 72
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=2.9e-14 Score=118.52 Aligned_cols=78 Identities=29% Similarity=0.533 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
....+|.|.||.+.++.++|+.+|++||.|-+|.|+.+ +|||||.|.+ ..+|+.|+++|+|..|+|+.|+|.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~-k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHD-KRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeee-cchHHHHHHhhcceeeccceeeehh
Confidence 34578999999999999999999999999999999986 6999999999 9999999999999999999999999
Q ss_pred ccCCC
Q 013061 399 GRNPG 403 (450)
Q Consensus 399 ~~~~~ 403 (450)
++=..
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 88443
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=8.3e-14 Score=123.86 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=81.0
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 105 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
.+.+.......++|+|+|||+...|-||+.+|.+||.|.+|.|+.+. .-||||+||+|++.++|++|.++|||..+.
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VE- 162 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVE- 162 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceee-
Confidence 33444455677899999999999999999999999999999999864 569999999999999999999999999995
Q ss_pred CCCcceeccccccCCCCcccCCCC
Q 013061 185 TDQPFRLNWATFSGSDRRTEACSD 208 (450)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~ 208 (450)
+|.|+|..+...-..++.+..+.
T Consensus 163 -GRkIEVn~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 163 -GRKIEVNNATARVHNKKKKVLPY 185 (376)
T ss_pred -ceEEEEeccchhhccCCcccCCC
Confidence 46666666665544444443333
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=1.8e-13 Score=99.29 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=66.3
Q ss_pred EEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 211 l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
|||+|||.++|+++|+++|+ .||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999995 8999999999998 6688999999999999999999999999999999885
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=2.8e-13 Score=127.13 Aligned_cols=150 Identities=23% Similarity=0.365 Sum_probs=114.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
.++|||+|||+++|+++|+++|..||.|..|.+..|+.+++++|||||+|.+.++|..|++.+++..+ .++.+++.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999 4566666663
Q ss_pred c----ccCCCC---------------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEE
Q 013061 195 T----FSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (450)
Q Consensus 195 ~----~~~~~~---------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~af 255 (450)
. ...... .........+++.+++..++..++...| ..++.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLF-KSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhc-cccccceeeeccCCCCCcccccccc
Confidence 2 111111 1223445679999999999999999999 4999997666655443332333333
Q ss_pred EEeCCHHHHHHH
Q 013061 256 VRFGDENERSRA 267 (450)
Q Consensus 256 V~f~~~~~a~~A 267 (450)
+.+.....+...
T Consensus 272 ~~~~~~~~~~~~ 283 (306)
T COG0724 272 VGNEASKDALES 283 (306)
T ss_pred cchhHHHhhhhh
Confidence 333333333333
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=7e-14 Score=119.16 Aligned_cols=80 Identities=35% Similarity=0.537 Sum_probs=73.0
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
.-++|||++|++++..|+|++.| |.||+|++..|+.|+.++++|||+||+|.+.++|.+|++.- +-.|+||+..++++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 34689999999999999999999 69999999999999999999999999999999999999743 45689999999988
Q ss_pred CC
Q 013061 287 TP 288 (450)
Q Consensus 287 ~~ 288 (450)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=1.4e-13 Score=99.98 Aligned_cols=65 Identities=38% Similarity=0.598 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCC
Q 013061 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (450)
Q Consensus 118 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 183 (450)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|++.+++..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 79999999999999999999999999999999987 899999999999999999999998877773
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=5.5e-13 Score=118.00 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=68.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.|+. ++|||||+|+++++|+.|| .|++..+ .++.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999999864 4689999999999999999 4999999 5677787776
Q ss_pred cc
Q 013061 195 TF 196 (450)
Q Consensus 195 ~~ 196 (450)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 53
No 79
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.46 E-value=1.2e-12 Score=127.00 Aligned_cols=175 Identities=13% Similarity=0.039 Sum_probs=123.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 107 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
+...-..+.+.+-+.++++++++.|+++||.-. .|.++.|..+...+...|-++|+|....++.+|+.. +...+ ..
T Consensus 303 stpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~--~~ 378 (944)
T KOG4307|consen 303 STPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDD--VN 378 (944)
T ss_pred CCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhh--hh
Confidence 333445677888999999999999999999654 456667766665444578999999999999999964 43333 23
Q ss_pred Ccceecccccc---------------------------------CC-CCcccCCCCceEEECCCCCCCCHHHHHHHHhhc
Q 013061 187 QPFRLNWATFS---------------------------------GS-DRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232 (450)
Q Consensus 187 ~~i~~~~~~~~---------------------------------~~-~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 232 (450)
+.+.+...... .. ..........+|||..||..+++.++.++|. .
T Consensus 379 R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~-~ 457 (944)
T KOG4307|consen 379 RPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFM-G 457 (944)
T ss_pred cceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhh-h
Confidence 33333211100 00 0001123456899999999999999999995 5
Q ss_pred CCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecC
Q 013061 233 YPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (450)
Q Consensus 233 ~g~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 287 (450)
.-.|++ |.|.+- -+++.++.|||.|..++++..|....+.+.++.+.|+|....
T Consensus 458 ~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 458 AAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred hhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 556666 555554 457888999999999988888877666666777888887543
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=7.6e-13 Score=97.64 Aligned_cols=78 Identities=19% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
..+....|||.|||+++|.|++.++|.+||.|..|+|-.. +|.|||-|++ ..+|++|++.|+|..+.++.|.|-|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYed-i~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYED-IFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehH-hhhHHHHHHHhcccccCCceEEEEec
Confidence 3455679999999999999999999999999999999653 7999999999 99999999999999999999999886
Q ss_pred cC
Q 013061 400 RN 401 (450)
Q Consensus 400 ~~ 401 (450)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 53
No 81
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=4.6e-12 Score=118.82 Aligned_cols=145 Identities=28% Similarity=0.516 Sum_probs=114.8
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecC
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 287 (450)
..+|||+|||.++++++|.++| ..||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..|.++.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999999999999999 599999999999998899999999999999999999999999999999999999976
Q ss_pred C-CCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC
Q 013061 288 P-KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG 362 (450)
Q Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~ 362 (450)
. .......... ......................+++.+++..++..++...|..+|.+..+.+...
T Consensus 194 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNN---------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccc---------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 4 1111100000 0000000012223344566788999999999999999999999999977777654
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6.2e-13 Score=117.67 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=68.7
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
.++|||+||++.+++++|+++|+.||.|.+|+|..+ +++|||+|.+ .++|..|+. |+|..|.|+.|+|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d-~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKD-PQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCc-HHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 469999999999999999999999999999999875 5899999999 999999996 999999999999999874
No 83
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.8e-13 Score=103.25 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=76.8
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
..+++|||+||+..++||.|.++|+ ..|+|..|.+-.|+.+..+=|+|||+|.+.++|..|++.+++..++.+.|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4578999999999999999999996 999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 013061 286 AT 287 (450)
Q Consensus 286 ~~ 287 (450)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.4e-13 Score=112.24 Aligned_cols=88 Identities=25% Similarity=0.464 Sum_probs=80.7
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
...+--|||+|||+++||.||.-.|+ .||+|.+|.+++|+.||+++||||+.|++-.+...|+..|||..|.||.|+|.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34566899999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCc
Q 013061 285 VATPKKASG 293 (450)
Q Consensus 285 ~~~~~~~~~ 293 (450)
.........
T Consensus 111 Hv~~Yk~pk 119 (219)
T KOG0126|consen 111 HVSNYKKPK 119 (219)
T ss_pred ecccccCCc
Confidence 776554443
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.6e-13 Score=108.27 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=72.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
-.++|||+||+..+++.||..+|. .||.|..|+|-+++ .|||||+|++..||+.|+..|++..|+|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 467999999999999999999995 99999999998754 589999999999999999999999999999999999
Q ss_pred CCCCC
Q 013061 287 TPKKA 291 (450)
Q Consensus 287 ~~~~~ 291 (450)
.-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76644
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=1.7e-12 Score=94.18 Aligned_cols=70 Identities=29% Similarity=0.665 Sum_probs=64.2
Q ss_pred EEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 211 l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
|||+|||+++++++|+++|+ .+|.|..+.+..++. +.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999995 999999999999977 89999999999999999999999998999999874
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=95.66 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=74.4
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
...++.|||.|||+++|.|+..++|. .||.|..|+|-..++ .+|.|||.|++..+|.+|++.|+|..+.++.+.|-
T Consensus 15 pevnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 44578999999999999999999996 999999999986654 48999999999999999999999999999999999
Q ss_pred ecCCCC
Q 013061 285 VATPKK 290 (450)
Q Consensus 285 ~~~~~~ 290 (450)
+..+..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 887654
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.6e-12 Score=125.37 Aligned_cols=175 Identities=17% Similarity=0.337 Sum_probs=131.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.....++|++||..+++..+.++...||++....++.|..+|-++||||.+|.++.....|+..|||+.+......+...
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999885443333322
Q ss_pred cccccCCC---C--------------cccCCCCceEEECCCC--CCC-CH-------HHHHHHHhhcCCCeeEEEEeecC
Q 013061 193 WATFSGSD---R--------------RTEACSDLSIFVGDLA--PDV-TD-------SILQETFSSKYPSVKGAKVIIDS 245 (450)
Q Consensus 193 ~~~~~~~~---~--------------~~~~~~~~~l~v~nl~--~~~-t~-------~~l~~~f~~~~g~i~~v~~~~~~ 245 (450)
........ + .....+++.|.+.|+= .++ .+ |+++..|+ .||.|..|.+.++.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEIPRPY 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEecCCCC
Confidence 22111000 0 1122334455555431 111 11 34455664 89999999998872
Q ss_pred ---CCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 246 ---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 246 ---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
...-..|..||+|++.+++.+|+..|+|.+|.+|.|...|-+.
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 2233567899999999999999999999999999999988754
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=2.4e-12 Score=120.41 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccH--HHHHHHHHHhcCCCCCCCCCcce
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR--AAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
....+|||+||+++++++||+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+|++.|||..| .++.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 4567999999999999999999999999999999994 567 89999999987 789999999999999 667777
Q ss_pred eccccc
Q 013061 191 LNWATF 196 (450)
Q Consensus 191 ~~~~~~ 196 (450)
|..+++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 776664
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3e-14 Score=116.09 Aligned_cols=80 Identities=24% Similarity=0.474 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
..+.-|||+|||++.||.||.-+|++||+|++|.+++|+.||+|+||||+.|++..+...|+..|||..+ .++.|+|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 4677899999999999999999999999999999999999999999999999999999999999999998 66778775
Q ss_pred cc
Q 013061 193 WA 194 (450)
Q Consensus 193 ~~ 194 (450)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 43
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.4e-12 Score=113.29 Aligned_cols=86 Identities=27% Similarity=0.508 Sum_probs=80.0
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+=+||||+-|+++++|.+|++.| +.||+|+.|.|++|+.||+++|||||+|.++.+..+|.+..+|..|+++.|.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34567899999999999999999999 59999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 013061 284 DVATPKK 290 (450)
Q Consensus 284 ~~~~~~~ 290 (450)
.+..-..
T Consensus 176 DvERgRT 182 (335)
T KOG0113|consen 176 DVERGRT 182 (335)
T ss_pred Eeccccc
Confidence 9876543
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=8.1e-13 Score=110.02 Aligned_cols=84 Identities=24% Similarity=0.431 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
-+.-.+|.|-||.+-++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|.+| .++.|+|
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelrV 87 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELRV 87 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceeee
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999 5577777
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 88 q~aryg 93 (256)
T KOG4207|consen 88 QMARYG 93 (256)
T ss_pred hhhhcC
Confidence 666543
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=114.07 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=73.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 107 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
.......+-+||||+-|+++++|..|+..|+.||+|+.|+|+.|+.||+++|||||+|+++.+...|.+..+|..|.+..
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 33345578899999999999999999999999999999999999999999999999999999999999999999985433
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=5.2e-12 Score=114.58 Aligned_cols=170 Identities=14% Similarity=0.172 Sum_probs=124.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh---cc-CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFS---HT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~---~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
..-.|.+++||+++++.++.+||. .. |.++.|.+++.+ +|+..|-|||.|..+++|..||.+....+- .+-|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iG---qRYI 235 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIG---QRYI 235 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHh---HHHH
Confidence 345789999999999999999995 22 255667666654 589999999999999999999976333221 1112
Q ss_pred eeccccc--------------------c------CCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCC-eeE--EE
Q 013061 190 RLNWATF--------------------S------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKG--AK 240 (450)
Q Consensus 190 ~~~~~~~--------------------~------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~--v~ 240 (450)
.+-.+.. . ....-....+..+|.+++||+..+.|+|..+|. .|-. |.- |.
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gVH 314 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGVH 314 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhcccceeE
Confidence 1111100 0 000001223367899999999999999999995 5543 433 67
Q ss_pred EeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCC
Q 013061 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 241 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 289 (450)
++.+. .|++.|.|||+|.+.++|.+|...++++....|.|+|-.+...
T Consensus 315 mv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 315 MVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred EEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 77774 4999999999999999999999999988888999999877644
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=5.4e-12 Score=86.92 Aligned_cols=55 Identities=36% Similarity=0.645 Sum_probs=51.9
Q ss_pred HHHhccccCceEEEEeeCCC-cEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 344 LREPFSQFGEILSVKIPVGK-GCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 344 L~~~F~~~G~v~~v~i~~~~-g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
|+++|++||.|.++.+.+++ ++|||+|.+ .++|.+|++.||+..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~-~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFAS-VEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESS-HHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999887 999999999 99999999999999999999999996
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.7e-12 Score=110.80 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...+|||+||++.+|+++|++||+.||.|.+|+|++|. +.++||||+|+++++|+.|+ .|+|..| .+.+|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEe
Confidence 45799999999999999999999999999999999985 45689999999999999999 6999998 445666654
Q ss_pred c
Q 013061 194 A 194 (450)
Q Consensus 194 ~ 194 (450)
.
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 3
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.2e-11 Score=114.31 Aligned_cols=157 Identities=20% Similarity=0.294 Sum_probs=114.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCC--Ccce---eEEEEeccHHHHHHHHHHhcCCC----C
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEG---YGFVEFYSRAAAEKVLQSYSGSL----M 182 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g---~afV~f~~~~~A~~A~~~l~g~~----~ 182 (450)
..-+++|||++|||+++|+.|...|..||.+.-=+-.+....+ -.+| |+|+-|+++.++...+..+.-.. |
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3457789999999999999999999999975322221111111 2456 99999999999998886654311 1
Q ss_pred CC-----CCC-----cceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCcee
Q 013061 183 PN-----TDQ-----PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 252 (450)
Q Consensus 183 ~~-----~~~-----~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g 252 (450)
.. +.+ ++++..+..- ........+.+||||++||.-++.++|..+|...||.|..+-|-.|++-+.++|
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEecCcccccceeEEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 01 111 1111111111 112234567889999999999999999999977999999999999988899999
Q ss_pred EEEEEeCCHHHHHHHHH
Q 013061 253 YGFVRFGDENERSRAMT 269 (450)
Q Consensus 253 ~afV~f~~~~~a~~A~~ 269 (450)
-+=|+|.+..+-.+||.
T Consensus 415 aGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cceeeecccHHHHHHHh
Confidence 99999999999999996
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=1e-12 Score=126.11 Aligned_cols=82 Identities=32% Similarity=0.590 Sum_probs=78.6
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
+.+||+|+|+++++++|.++|+ ..|.|.+++++.|++||+++||+|++|.+.++|..|++.||+.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999995 999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 013061 289 KKA 291 (450)
Q Consensus 289 ~~~ 291 (450)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 654
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.7e-13 Score=110.45 Aligned_cols=87 Identities=26% Similarity=0.574 Sum_probs=82.1
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||++|..++++.-|...|- +||+|.+|.+..|.++.+.|||+||+|...++|.+||..||..++.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3567999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc
Q 013061 286 ATPKKASG 293 (450)
Q Consensus 286 ~~~~~~~~ 293 (450)
+.|.+...
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99987654
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=7.3e-12 Score=117.20 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC--CcEEEEEeecCH--HHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--KGCGFVQFANSR--KDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--~g~afV~F~~~~--~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
....+|||+||++.+++++|+.+|..||.|.+|.|++. ||||||+|.+ . .++.+|+..|||..+.|+.|+|.-|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMss-dddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSP-SSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecC-CcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34579999999999999999999999999999999874 7999999997 5 68999999999999999999999988
No 101
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=108.00 Aligned_cols=73 Identities=26% Similarity=0.303 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
...+|+|+||++.+|+++|+++|+.||.|.+|+|.++ +++|||+|.+ +++|..|+. |+|..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3579999999999999999999999999999999986 4799999999 999999985 99999999999998755
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4.7e-12 Score=98.08 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
-..-.|||.++...+||++|.+.|..||+|+.|.+..|+.||-.+|||+|+|++.+.|.+|++.+|+..+ .+..|.|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEE
Confidence 4455799999999999999999999999999999999999999999999999999999999999999988 56778888
Q ss_pred ccccc
Q 013061 193 WATFS 197 (450)
Q Consensus 193 ~~~~~ 197 (450)
|.-..
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 87644
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.8e-11 Score=88.88 Aligned_cols=68 Identities=50% Similarity=0.850 Sum_probs=64.1
Q ss_pred EEEEecCCCCCCHHHHHHhccccCceEEEEeeCCC----cEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK----GCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~----g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
+|+|+|||..+++++|+++|+.||.|.++.+..++ ++|||+|.+ .++|..|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~-~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFES-EEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCC-HHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998865 999999999 999999999999999999999874
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=1.8e-11 Score=88.53 Aligned_cols=64 Identities=38% Similarity=0.629 Sum_probs=60.2
Q ss_pred EcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCC
Q 013061 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (450)
Q Consensus 120 V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 183 (450)
|+|||+.+++++|+++|+.||.|..+.+..++.+++++++|||+|.+.++|.+|++.+++..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999999998878899999999999999999999999987773
No 105
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.2e-12 Score=106.15 Aligned_cols=79 Identities=29% Similarity=0.619 Sum_probs=73.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
..++|||++|..+|++.-|...|-+||.|.+|.++.+ |+++||+|.. .++|.+|+..||+.+|.||.|+|.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~-aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEE-AEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeec-cchhHHHhhcCchhhhcceeEEEeec
Confidence 4579999999999999999999999999999999864 7999999999 99999999999999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
++.+-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 976643
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=1.1e-11 Score=119.21 Aligned_cols=80 Identities=25% Similarity=0.554 Sum_probs=76.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.+|+++||+|++|.+.++|.+|++.||+..+ .++.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 67889998887
Q ss_pred cc
Q 013061 196 FS 197 (450)
Q Consensus 196 ~~ 197 (450)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 54
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.3e-11 Score=95.69 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=79.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
+...-.|||.++....++++|.+.|+ .||+|..|.+..|..||..+|||+|+|.+.+.|.+|+..+|+..+.+..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34456799999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013061 285 VATPKKA 291 (450)
Q Consensus 285 ~~~~~~~ 291 (450)
|+-.+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9865543
No 108
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=6.2e-11 Score=85.96 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=66.3
Q ss_pred eEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 210 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
+|+|+|||..+++++|+++| +.||.|..+.+..+. +.++++|||+|.+.++|.+|++.+++..+.++.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~-~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELF-SKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHH-HhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999 599999999998876 6788999999999999999999999999999988763
No 109
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=6.6e-11 Score=85.49 Aligned_cols=71 Identities=37% Similarity=0.780 Sum_probs=66.0
Q ss_pred ECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 213 v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
|+|||..+++++|+++| +.||.|..+.+..+..++.++++|||+|.+.++|..|++.+++..+.++.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999 599999999999988788999999999999999999999999999999998873
No 110
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.4e-10 Score=110.98 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=107.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
..+-..++|+|-|||.++++++|+.+|+.||+|..|+.-+. .++.+||+|.|..+|+.|++.|++..+.+.. +
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~--~ 142 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKR--I 142 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh--h
Confidence 34567899999999999999999999999999999776554 3479999999999999999999998874432 2
Q ss_pred eecccc---------------ccCCC-C-cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCcee
Q 013061 190 RLNWAT---------------FSGSD-R-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 252 (450)
Q Consensus 190 ~~~~~~---------------~~~~~-~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g 252 (450)
+..... ..... . .....+...++ +.|++..+...++..+ ..+|.+.. +.. +.-.-
T Consensus 143 k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~-~~~~~~~~-~~~-----~~~~h 214 (549)
T KOG4660|consen 143 KRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHIS-SVDGSSPG-RET-----PLLNH 214 (549)
T ss_pred cCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcch-hccCcccc-ccc-----cchhh
Confidence 211000 00000 0 00111122333 3488888776666666 47777665 222 22222
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 253 ~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
.-|+.|.+..++..+.... |..+.+....+.++.+
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 4578888888886665523 6667777666666654
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.9e-10 Score=107.87 Aligned_cols=167 Identities=23% Similarity=0.314 Sum_probs=112.9
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCC--CCcee---EEEEEeCCHHHHHHHHHHhCCceec
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT--GRTKG---YGFVRFGDENERSRAMTEMNGVYCS 277 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~--~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~ 277 (450)
....-+++|||++||++++|+.|...|. .||.+.-=.-.+.... --++| |+|+.|+++..+..-+..|.. +
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~-~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFG-QFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcc-cccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 3344568999999999999999999994 9998653222111111 12566 999999999998888776654 3
Q ss_pred CccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhcc-ccCceEE
Q 013061 278 SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS-QFGEILS 356 (450)
Q Consensus 278 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~-~~G~v~~ 356 (450)
...+-+..+.+.......+..+... .. ...-........+.+||||++||..++.++|-.+|+ -||.|..
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~l--------aD-s~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~y 400 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVL--------AD-SDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY 400 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEe--------cc-chhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEE
Confidence 3333333333322211101000000 00 000011334556789999999999999999999998 6999999
Q ss_pred EEeeCC------CcEEEEEeecCHHHHHHHHHH
Q 013061 357 VKIPVG------KGCGFVQFANSRKDAEVALQK 383 (450)
Q Consensus 357 v~i~~~------~g~afV~F~~~~~~A~~A~~~ 383 (450)
+-|..| +|.+-|+|.+ -.+-.+||.+
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsn-qqsYi~AIsa 432 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSN-QQAYIKAISA 432 (520)
T ss_pred EEeccCcccCCCCCcceeeecc-cHHHHHHHhh
Confidence 988876 6999999999 8888888875
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=2.5e-10 Score=111.15 Aligned_cols=186 Identities=12% Similarity=0.030 Sum_probs=127.5
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
+.+-+.+.+.+.++.|++++|. --.|..+.|..+.-.+...|.++|+|....++.+|+. -|...+-+|.+.|.....
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~--g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFP--GRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred heeeecccccccccchhhhhcC--cccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCc
Confidence 3466678888999999999994 3345666666665444457899999999999999985 556666788888877665
Q ss_pred CCCCcccccchhhh-hhhcCCCCC------CCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEE-EEee
Q 013061 289 KKASGYQQQYSSQA-LVLAGGPGS------NGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIP 360 (450)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~-v~i~ 360 (450)
.............. .......+. .................+|||..||..+++.++.++|+.--.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 44332111111110 000000000 001111123345566789999999999999999999998778877 6665
Q ss_pred CC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 361 VG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 361 ~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
+. ++.|||.|.+ ++++.+|...-+...++.+.|+|.-
T Consensus 469 ~~P~~~~~~~afv~F~~-~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIH-PTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred cCCcccccchhhheecc-ccccchhhhcccccccCceEEEeec
Confidence 42 5899999999 8888888877777778889999874
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.6e-12 Score=126.31 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=182.1
Q ss_pred CCceEEEcCCCCCCCHH-HHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 114 ETKTIWIGDLFHWMDET-FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
..+.+.+.++.+..... .++..|..+|.|+.|++......-..-.+.++.+....+++.|... .+..+.+....+-+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCCCC
Confidence 34567888888877665 6788999999999998876322222223789999999999999854 565554333333333
Q ss_pred cccccCCCCccc---CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 193 WATFSGSDRRTE---ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 193 ~~~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
.+.......+.. .....++|++||+..+.+++|...|+ .++.+..+.+....+.++.+|+||++|.+.+++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 222211111111 12235799999999999999999996 99998888777666789999999999999999999997
Q ss_pred HhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhcc
Q 013061 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (450)
Q Consensus 270 ~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~ 349 (450)
....+.+. ...|+|.|+|+..|.++|+.+|+
T Consensus 728 f~d~~~~g-------------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~ 758 (881)
T KOG0128|consen 728 FRDSCFFG-------------------------------------------------KISVAISGPPFQGTKEELKSLAS 758 (881)
T ss_pred hhhhhhhh-------------------------------------------------hhhhheeCCCCCCchHHHHhhcc
Confidence 54443332 23789999999999999999999
Q ss_pred ccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 350 QFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 350 ~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
.+|.+.+++++.. +|.|+|.|.+ ..+|.++....+...+..+.+.|..+.+...
T Consensus 759 ~~gn~~~~~~vt~r~gkpkg~a~v~y~~-ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 759 KTGNVTSLRLVTVRAGKPKGKARVDYNT-EADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccCCccccchhhhhccccccceeccCCC-cchhhhhcccchhhhhhhcCccccccCCccc
Confidence 9999999987653 6899999999 8999999988898888888888888666443
No 114
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=1.7e-10 Score=84.15 Aligned_cols=69 Identities=48% Similarity=0.836 Sum_probs=64.8
Q ss_pred EEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+ .++|..|++.+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s-~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFED-EEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECC-HHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998875 5899999999 9999999999999999999999875
No 115
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=4.5e-10 Score=81.85 Aligned_cols=74 Identities=39% Similarity=0.809 Sum_probs=67.8
Q ss_pred eEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 210 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
+|+|+|||..+++++|+++|. .+|.|..+.+..+..+ .+++++||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999994 8999999999988654 7789999999999999999999999999999998864
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.4e-11 Score=103.57 Aligned_cols=146 Identities=20% Similarity=0.372 Sum_probs=118.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||.||...++|+-|.++|-+.|+|..|.|..++. ++.+ ||||+|+++-+...|++-+||..+.+ .++++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~--~e~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEE--DEEQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhcc--chhhc
Confidence 45788999999999999999999999999999999888764 5566 99999999999999999999988844 34433
Q ss_pred ccccccCCCCcccCCCCceEEECC----CCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHH
Q 013061 192 NWATFSGSDRRTEACSDLSIFVGD----LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (450)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A 267 (450)
+++.++ |...++++.+.+.|+ .-+.++.+++.++.+ ++.+.+.|+++...-..-.+
T Consensus 82 ------------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 ------------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ------------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 344444 667789999999996 899999999998866 88888999998888777777
Q ss_pred HHHhCCceecCccE
Q 013061 268 MTEMNGVYCSSRPM 281 (450)
Q Consensus 268 ~~~l~~~~~~g~~i 281 (450)
+....+....-+++
T Consensus 142 ~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 142 LDLYQGLELFQKKV 155 (267)
T ss_pred hhhhcccCcCCCCc
Confidence 77666554433333
No 117
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.11 E-value=4e-10 Score=107.80 Aligned_cols=79 Identities=30% Similarity=0.400 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC----C--CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----G--KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~----~--~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
...|||.|||.+++.++|+++|+.||.|+...|.. + .+++||+|.+ .+++..|+.+ +-..+++++|.|+-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~-~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFEN-AAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEee-cchhhhhhhc-CccccCCeeEEEEecc
Confidence 34599999999999999999999999998877654 2 2899999999 8999999986 5778999999999988
Q ss_pred CCCCCCC
Q 013061 401 NPGNKQW 407 (450)
Q Consensus 401 ~~~~~~~ 407 (450)
...++.+
T Consensus 366 ~~~~g~~ 372 (419)
T KOG0116|consen 366 PGFRGNG 372 (419)
T ss_pred ccccccc
Confidence 7554443
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=4.3e-10 Score=81.16 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=54.1
Q ss_pred HHHHHHHHhh----cCCCeeEEE-EeecCCC--CCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 222 DSILQETFSS----KYPSVKGAK-VIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 222 ~~~l~~~f~~----~~g~i~~v~-~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
+++|+++| + .||.|.+|. ++.++.+ +.++|++||+|.+.++|.+|+..||+..+.|+.|++.
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 45677777 5 899999995 7777666 8899999999999999999999999999999998763
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.08 E-value=1.1e-10 Score=100.74 Aligned_cols=172 Identities=31% Similarity=0.436 Sum_probs=135.7
Q ss_pred CceEEEcCCCCCCCHHH-H--HHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 115 TKTIWIGDLFHWMDETF-L--HNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~-l--~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...++++++-..+..+- | ...|+.+-.++..+++++.. +..++++|+.|+....-.++-..-+++.+ ...+|++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccc--cCcceee
Confidence 34566777766665554 3 67788887788888888864 77889999999988887777766667666 3444666
Q ss_pred ccccccCCCCc-ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 192 NWATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 192 ~~~~~~~~~~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
........... .-...+-+||.+.|..+++.+-|...| ++|-.....++++|+.|++++||+||.|.+..++.+|+++
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 54443332222 223456789999999999999999999 5999999999999999999999999999999999999999
Q ss_pred hCCceecCccEEEeecCCCC
Q 013061 271 MNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 271 l~~~~~~g~~i~v~~~~~~~ 290 (450)
++++.++.+.|.+..+.-+.
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999988765443
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=3.9e-10 Score=81.39 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=50.2
Q ss_pred HHHHHHHhh----ccCCceEEE-EEecCCC--CCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 129 ETFLHNCFS----HTGQVVNVK-VIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 129 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
+++|+++|+ .||.|.+|. |+.++.+ ++++||+||+|.+.++|.+|++.|||..+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578889998 999999996 7777766 8999999999999999999999999998844
No 121
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=1e-09 Score=75.43 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=50.1
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 225 l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
|+++|+ +||.|.++.+..+. +++|||+|.+.++|..|++.||+..+.|+.|+|.|+
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678994 99999999998664 479999999999999999999999999999999985
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.03 E-value=5.3e-10 Score=110.53 Aligned_cols=80 Identities=35% Similarity=0.720 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCC
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 405 (450)
-++||||+.|+..+++.||.++|+.||.|.+|.+...++||||.+.+ +.+|.+|+.+|++..+.++.|+|.|+...+-+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~-RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVR-RQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEee-hhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 36899999999999999999999999999999999999999999999 99999999999999999999999999976644
Q ss_pred C
Q 013061 406 Q 406 (450)
Q Consensus 406 ~ 406 (450)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 4
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.02 E-value=4.6e-10 Score=103.26 Aligned_cols=177 Identities=21% Similarity=0.309 Sum_probs=139.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...+++|++++.+.+.+.++..++..+|.+..+.+........++++++|.|...+.+..|+...-...+.......-+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888887778899999999999999999999653333332221111111
Q ss_pred cccc---cCCCCcccCCCCceEE-ECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHH
Q 013061 193 WATF---SGSDRRTEACSDLSIF-VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (450)
Q Consensus 193 ~~~~---~~~~~~~~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 268 (450)
.... .............+++ |++|+..+++++|++.|. .+|.|..+++..+..++.++|+++|.|.+..++..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 1111 0111112223334444 999999999999999995 9999999999999999999999999999999999999
Q ss_pred HHhCCceecCccEEEeecCCCCC
Q 013061 269 TEMNGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 269 ~~l~~~~~~g~~i~v~~~~~~~~ 291 (450)
.. ....+.++++.+....+...
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hc-ccCcccCcccccccCCCCcc
Confidence 76 78889999999999887754
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.3e-10 Score=100.69 Aligned_cols=85 Identities=26% Similarity=0.438 Sum_probs=80.1
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.+.|||..|.+-++.++|.-+|+ .||.|..+.|++|..||.+..||||+|.+.+++++|.-+|++..|+++.|+|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 346789999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 013061 284 DVATPK 289 (450)
Q Consensus 284 ~~~~~~ 289 (450)
.++...
T Consensus 314 DFSQSV 319 (479)
T KOG0415|consen 314 DFSQSV 319 (479)
T ss_pred ehhhhh
Confidence 998654
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=3e-10 Score=114.03 Aligned_cols=163 Identities=20% Similarity=0.382 Sum_probs=140.1
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
+...+++||++||+..+++.+|+..| ..+|.|.+|.|.+... +.-.-|+||.|.+.+.+-.|+..+.+..|..-.+++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af-~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAF-DESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhh-hhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34567899999999999999999999 5999999999887643 333448999999999999999889888887666666
Q ss_pred eecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCC
Q 013061 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~ 363 (450)
.+..++ ....+.+++++|+..+....|..+|..||.|..|.+....
T Consensus 446 glG~~k----------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq 491 (975)
T KOG0112|consen 446 GLGQPK----------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ 491 (975)
T ss_pred cccccc----------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC
Confidence 655442 2235789999999999999999999999999999999888
Q ss_pred cEEEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEeccCCC
Q 013061 364 GCGFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWGRNPG 403 (450)
Q Consensus 364 g~afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~ 403 (450)
.+|||.|++ ...|..|+..|-|..|++ +.|+|.|+....
T Consensus 492 ~yayi~yes-~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 492 PYAYIQYES-PPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred cceeeeccc-CccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 999999999 999999999999999985 889999998654
No 126
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.01 E-value=6e-10 Score=110.15 Aligned_cols=107 Identities=23% Similarity=0.388 Sum_probs=84.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
++||||+.|+..+++.||..+|+.||+|.+|.++.. ++||||++.+..+|.+|+.+|+...+ ..+.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 469999999999999999999999999999999875 47999999999999999999998777 7788999999
Q ss_pred cccCCCCcccCCCCceEEECCCCCCCCHHHHHHHH
Q 013061 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 229 (450)
--......-...-...+=|.-||++.-.++++.++
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 75544332222223334455567765555666665
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.8e-09 Score=97.48 Aligned_cols=81 Identities=35% Similarity=0.695 Sum_probs=72.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHh-cCCeeCCeEEEEEe
Q 013061 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL-QGTAIGKQTVRLSW 398 (450)
Q Consensus 320 ~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l-~g~~~~g~~l~v~~ 398 (450)
.+......++|||++|-..+++.+|+++|.+||.|+.|.+...+++|||+|.+ .++|.+|.+++ +...|+|.+|+|.|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftT-R~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTT-REAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehh-hHHHHHHHHhhcceeeecceEEEEEe
Confidence 34445567899999999999999999999999999999999999999999999 99999877665 66678999999999
Q ss_pred ccC
Q 013061 399 GRN 401 (450)
Q Consensus 399 ~~~ 401 (450)
+++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 998
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.1e-10 Score=100.85 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
-..+...|||-.|.+-+|++||+-+|+.||.|.+|.|++|..||.+..||||+|.+.+++++|.-+|++.++ ..+.|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIH 312 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIH 312 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999999988 667777
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
|.++.
T Consensus 313 VDFSQ 317 (479)
T KOG0415|consen 313 VDFSQ 317 (479)
T ss_pred eehhh
Confidence 77665
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=3.8e-11 Score=119.84 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=129.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...++||+||+..+.+++|...|..+|.+..+.+.-.++.++.+|+|||+|..++++.+|+...+...+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 3457999999999999999999999998888888766778999999999999999999999765555441
Q ss_pred ccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
...|+|.|.|+..|.++++.++. .+|.+.+++++..+. |+++|.++|.|.++.++.++....+.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchh
Confidence 33689999999999999999994 999999998777754 99999999999999999999887777
Q ss_pred ceecCccEEEeecCCC
Q 013061 274 VYCSSRPMRIDVATPK 289 (450)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (450)
..+..+.+.|..+.+.
T Consensus 800 ~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhcCccccccCCc
Confidence 7777777777776663
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.96 E-value=1.3e-09 Score=100.29 Aligned_cols=176 Identities=24% Similarity=0.314 Sum_probs=135.4
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
...++|++++...+.+.++..++ ...|.+.............+++++.+.|...+.+..|+.......+.++.+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~-~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFS-SEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccc-hhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46689999999999888888888 47887777666665566888999999999999999999744445666666666655
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
........ ...............+|.+++..+++++|+.+|..+|.|..++++..
T Consensus 166 ~~~~~~~~---------------------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 166 TRRGLRPK---------------------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG 224 (285)
T ss_pred cccccccc---------------------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc
Confidence 54442100 00001122333444559999999999999999999999999999864
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 406 (450)
++++||+|.+ ...+.+++.. ....+.++.++|.+..+...+.
T Consensus 225 ~~kg~a~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 225 DSKGFAYVDFSA-GNSKKLALND-QTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred chhhhhhhhhhh-chhHHHHhhc-ccCcccCcccccccCCCCcccc
Confidence 6899999999 8898888887 8889999999999999876553
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=109.48 Aligned_cols=166 Identities=20% Similarity=0.335 Sum_probs=137.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.....+++||++||+..+++.+|+..|..+|.|.+|.|-+-+. +.-..|+||.|.+...+-.|.-.+.+..|......+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 3456788999999999999999999999999999999877642 455679999999999999999999998886554444
Q ss_pred eeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
.+... ....++.+++++|...+....|...| ..||.|..|.+-.. . -|++|.|.+...+.+|+.
T Consensus 446 glG~~---------kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~hg----q--~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 GLGQP---------KSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRHG----Q--PYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccccc---------ccccceeeccCCCCCCChHHHHHHHh-hccCcceeeecccC----C--cceeeecccCccchhhHH
Confidence 44322 34567889999999999999999999 59999998766433 2 299999999999999999
Q ss_pred HhCCceec--CccEEEeecCCCCCC
Q 013061 270 EMNGVYCS--SRPMRIDVATPKKAS 292 (450)
Q Consensus 270 ~l~~~~~~--g~~i~v~~~~~~~~~ 292 (450)
.+.+..|+ .+.++|.++.+....
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCCC
Confidence 99999986 467888888765443
No 132
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=2.8e-09 Score=89.57 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc-CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
......++|..+|.-+.+.+|..+|.++ |.|..+++-+++.||.|+|||||+|++++.|+-|.+.||+.+|.+.-..++
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456689999999999999999999998 788888888999999999999999999999999999999999955443333
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=85.45 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=78.3
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
........+++..+|.-+.+.++...|.+.+|.|.++++-+++.||.++|||||+|++.+.|.-|-+.||+..|.++.+.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 33445668999999999999999999974448899999989999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 013061 283 IDVATPK 289 (450)
Q Consensus 283 v~~~~~~ 289 (450)
+.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998776
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=9.7e-09 Score=98.56 Aligned_cols=180 Identities=21% Similarity=0.275 Sum_probs=116.9
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....+.++|+|-|||.++++++|+++|+ .||+|+.|+.. ...++..||+|-|..+|++|++.|++.+|.++.|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456788999999999999999999995 99999997644 34468999999999999999999999999999988
Q ss_pred EeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC
Q 013061 283 IDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG 362 (450)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~ 362 (450)
.... .......... ..-+.....+... ......... .++ +.|++..+..-++..|.-+|.+..-+...-
T Consensus 144 ~~~~-~~~~~~~~~~--~~~~~~~~~p~a~------s~pgg~~~~-~~~-g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~ 212 (549)
T KOG4660|consen 144 RPGG-ARRAMGLQSG--TSFLNHFGSPLAN------SPPGGWPRG-QLF-GMLSPTRSSILLEHISSVDGSSPGRETPLL 212 (549)
T ss_pred CCCc-ccccchhccc--chhhhhccchhhc------CCCCCCcCC-cce-eeeccchhhhhhhcchhccCccccccccch
Confidence 1111 1111111111 0000000000000 001111111 222 227777777666667777787766222222
Q ss_pred CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 363 KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 363 ~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
+..-|++|.+ ..++..+...+ |..+.+....++|+.+
T Consensus 213 ~hq~~~~~~~-~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 213 NHQRFVEFAD-NRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhhhcc-ccchhhcccCC-ceecCCCCceEEecCC
Confidence 4477888888 78887676644 7777788888888776
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=3.1e-09 Score=89.73 Aligned_cols=139 Identities=26% Similarity=0.338 Sum_probs=111.7
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||.|+...++++-|.|+|- ..|+|..|.|..++. ++.+ ||||.|.++....-|++.+|+..+.++.+.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4568999999999999999999995 899999999988865 5666 999999999999999999999999888887765
Q ss_pred cCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---
Q 013061 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--- 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--- 362 (450)
-.-.... -|...++++.+...|+.-+.+..+++.++
T Consensus 84 r~G~sha-----------------------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~ 122 (267)
T KOG4454|consen 84 RCGNSHA-----------------------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDG 122 (267)
T ss_pred ccCCCcc-----------------------------------------hhhhhcchhhheeeecccCCCCCccccccccC
Confidence 4222111 15567788888999999999999888763
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCee
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAI 389 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~ 389 (450)
+.+.|+++.. ....-.++....+.++
T Consensus 123 rnrn~~~~~~qr-~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 123 RNRNFGFVTYQR-LCAVPFALDLYQGLEL 150 (267)
T ss_pred CccCccchhhhh-hhcCcHHhhhhcccCc
Confidence 5788888877 6666667776666544
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.7e-08 Score=91.20 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=69.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
..+...++|||++|-..++|.+|+++|.+||+|.+|.++..+ ++|||+|.+.++|+.|.+++-. .+...+..|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eeeecceEE
Confidence 455678899999999999999999999999999999998865 4999999999999999987655 344567788
Q ss_pred eeccccc
Q 013061 190 RLNWATF 196 (450)
Q Consensus 190 ~~~~~~~ 196 (450)
+|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 8889886
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=2.6e-09 Score=98.51 Aligned_cols=154 Identities=20% Similarity=0.363 Sum_probs=126.8
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-ecCccEEEeecC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVAT 287 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~i~v~~~~ 287 (450)
++||++||.+.++..||..+|.+.--....-.+++ .||+||.+.+...|.+|++.++++. +.|+.+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 47899999999999999999964322233323332 3699999999999999999999854 789999999998
Q ss_pred CCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC-CC--c
Q 013061 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-GK--G 364 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~-~~--g 364 (450)
++..+ ++.+-|.|+|....++.|..++..||.|+.|.... +. -
T Consensus 75 ~kkqr----------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta 120 (584)
T KOG2193|consen 75 PKKQR----------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA 120 (584)
T ss_pred hHHHH----------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH
Confidence 87665 45688999999999999999999999999987654 33 2
Q ss_pred EEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 365 CGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 365 ~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
..-|+|.+ .+.++.|+.+|+|..|.+..++|.|-.....
T Consensus 121 vvnvty~~-~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 121 VVNVTYSA-QQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHHHH-HHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 33478999 9999999999999999999999999875443
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=2e-07 Score=70.58 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=66.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc--CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCC--CCccee
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT--DQPFRL 191 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~--~~~i~~ 191 (450)
+||+|+|||...|.++|.+++... |...-+.+..|-.++.+.|||||.|.++++|.+..+.++|..+... .+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988653 5666788888988899999999999999999999999999988542 333444
Q ss_pred cccc
Q 013061 192 NWAT 195 (450)
Q Consensus 192 ~~~~ 195 (450)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 4443
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=8.4e-08 Score=91.88 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
..+.|||++|...+...+|+.+|++||+|+-.+|+.+ ++++||++.+ .++|.++|..||.++|.|+.|.|+-+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSt-s~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMST-SAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecc-hHHHHHHHHHhhhhhhcceeeeeeec
Confidence 4568999999999999999999999999999888764 6899999999 99999999999999999999999998
Q ss_pred cC
Q 013061 400 RN 401 (450)
Q Consensus 400 ~~ 401 (450)
++
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 85
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=7.2e-08 Score=92.33 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=75.7
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecC
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 287 (450)
.+.|||.+|...+...+|+.+|+ +||.|...+|+.+..+.-.++|+||++.+.++|.+||+.|+..++.|+.|.|+.++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46899999999999999999996 99999999999998888889999999999999999999999999999999999887
Q ss_pred CC
Q 013061 288 PK 289 (450)
Q Consensus 288 ~~ 289 (450)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.56 E-value=1.4e-07 Score=81.87 Aligned_cols=81 Identities=30% Similarity=0.545 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
.....+||.+.|..+++++.|...|.+|-.....++++|+.||+++||+||.|.+++++..|+++++|+.+. .++|++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg--srpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG--SRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc--cchhHh
Confidence 345668999999999999999999999999999999999999999999999999999999999999999994 456655
Q ss_pred ccc
Q 013061 192 NWA 194 (450)
Q Consensus 192 ~~~ 194 (450)
+..
T Consensus 265 RkS 267 (290)
T KOG0226|consen 265 RKS 267 (290)
T ss_pred hhh
Confidence 433
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.7e-07 Score=81.83 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=74.1
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
...+|+|.||++.++.+||+|+| ..|+.+..+.+..++ .|.+.|.|-|.|...++|.+|++.+++..++|+.+.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF-~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELF-AEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHH-HHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34689999999999999999999 499999988888885 5999999999999999999999999999999999999887
Q ss_pred CCCC
Q 013061 287 TPKK 290 (450)
Q Consensus 287 ~~~~ 290 (450)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6544
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.45 E-value=6.3e-07 Score=79.55 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...+.+|+|.|||..++++||+++|..||.+..+.|-.|+ .|++.|.|-|.|...++|..|++.+++..+ .+.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc--CCceeee
Confidence 3455789999999999999999999999998888888886 699999999999999999999999999777 4455655
Q ss_pred ccc
Q 013061 192 NWA 194 (450)
Q Consensus 192 ~~~ 194 (450)
...
T Consensus 157 ~~i 159 (243)
T KOG0533|consen 157 EII 159 (243)
T ss_pred EEe
Confidence 443
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.39 E-value=7.9e-07 Score=87.65 Aligned_cols=83 Identities=28% Similarity=0.593 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecC---CCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~ 188 (450)
+..++.|||+||++.++++.|...|..||+|.+|+|+..+ +..+.+-|+||-|-+..+|++|++.|+|.++ ...+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeee
Confidence 4567789999999999999999999999999999998643 3345677999999999999999999999998 5678
Q ss_pred ceeccccc
Q 013061 189 FRLNWATF 196 (450)
Q Consensus 189 i~~~~~~~ 196 (450)
+++.|.+.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 88888864
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.38 E-value=8.4e-07 Score=68.94 Aligned_cols=70 Identities=34% Similarity=0.521 Sum_probs=47.3
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCC-----eeCCeEEEEEe
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGT-----AIGKQTVRLSW 398 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~-----~~~g~~l~v~~ 398 (450)
++|+|.+++..++.++|+++|+.||.|.+|.+.++...|||.|.+ .++|.+|+..+.-. .+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~-~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKT-PEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS----HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECC-cchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 578999999999999999999999999999999999999999999 89999999887544 56666666654
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.37 E-value=1.2e-06 Score=84.23 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=62.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.......+|||+|||+++++++|+++|..||+|+...|......++..+|+||+|.+.+++..|+.+ + .+....+.+
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-s--p~~ig~~kl 359 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-S--PLEIGGRKL 359 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-C--ccccCCeeE
Confidence 3344555699999999999999999999999999988877543355558999999999999999976 3 333344444
Q ss_pred eec
Q 013061 190 RLN 192 (450)
Q Consensus 190 ~~~ 192 (450)
.|.
T Consensus 360 ~Ve 362 (419)
T KOG0116|consen 360 NVE 362 (419)
T ss_pred EEE
Confidence 443
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=1.5e-06 Score=62.32 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=48.3
Q ss_pred cEEEEecCCCCCCHHHH----HHhcccc-CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 328 ATIFVGALDSDVSDEDL----REPFSQF-GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L----~~~F~~~-G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
..|+|.|||.+.+...| +.++..+ |.|..| ..+.|+|.|.+ .+.|.+|.+.|+|..+.|+.|.|+|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~-~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPN-QEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESS-HHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCC-HHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 46999999999886654 4566677 467766 26899999999 99999999999999999999999999654
Q ss_pred C
Q 013061 403 G 403 (450)
Q Consensus 403 ~ 403 (450)
+
T Consensus 78 r 78 (90)
T PF11608_consen 78 R 78 (90)
T ss_dssp -
T ss_pred c
Confidence 3
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.35 E-value=6.3e-07 Score=79.83 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....+.+||+|+.+.+|.+++...|+.||.|..+.|.+|+..+.+++|+||+|.+.+.+..++. |++..+. ...+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~--~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP--GPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc--cccce
Confidence 44577899999999999999999999999999999999999999999999999999999999997 9999994 45555
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
+.+..
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 54443
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=86.19 Aligned_cols=83 Identities=41% Similarity=0.765 Sum_probs=74.8
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC---------CCcEEEEEeecCHHHHHHHHHHhcCCe
Q 013061 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---------GKGCGFVQFANSRKDAEVALQKLQGTA 388 (450)
Q Consensus 318 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~---------~~g~afV~F~~~~~~A~~A~~~l~g~~ 388 (450)
+......+..+.|||+||+..++++.|...|..||.|..|+|+. .+.|+||-|-+ ..+|.+|++.|+|..
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmn-R~D~era~k~lqg~i 243 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMN-RADAERALKELQGII 243 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehh-hhhHHHHHHHhccee
Confidence 33445567788999999999999999999999999999999874 35899999999 999999999999999
Q ss_pred eCCeEEEEEeccC
Q 013061 389 IGKQTVRLSWGRN 401 (450)
Q Consensus 389 ~~g~~l~v~~~~~ 401 (450)
+.+..+++.|++.
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999974
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.33 E-value=2.6e-06 Score=75.91 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=71.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
...+...+||+|+.+.+|.++|..+|+.||.|..+.|+.+ ++++||+|.+ .+.+..|+. |++..|.++.+.|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~-~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSS-YELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEeccc-HhhhHHHhh-cCCccccccccee
Confidence 4556789999999999999999999999999988887764 6899999999 999999999 9999999999999
Q ss_pred EeccCC
Q 013061 397 SWGRNP 402 (450)
Q Consensus 397 ~~~~~~ 402 (450)
++.+.+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998876
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.31 E-value=6.8e-06 Score=62.24 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=68.1
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhc-CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec----CccEEE
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS----SRPMRI 283 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~-~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v 283 (450)
++|.|+|||...|.++|.+++.+. .|...-+.+..|..++.+.|||||-|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888533 355667888889888999999999999999999999999998873 566777
Q ss_pred eecCCC
Q 013061 284 DVATPK 289 (450)
Q Consensus 284 ~~~~~~ 289 (450)
.+|...
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777543
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.19 E-value=5.6e-07 Score=82.68 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=117.5
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCC---CCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
..|.|.||.+.+|.+.+..+|. ..|.|.++.|+.+.. -......|||.|.+...+..|-. |.+..|-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3799999999999999999995 999999999987432 22345689999999999988865 777777777766654
Q ss_pred cC-CCCCCc--ccccchhhhhhhcCCCCC--CCCc-------------------ccCCCCCCCCCCcEEEEecCCCCCCH
Q 013061 286 AT-PKKASG--YQQQYSSQALVLAGGPGS--NGAR-------------------VQGSQSDGESNNATIFVGALDSDVSD 341 (450)
Q Consensus 286 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~~~l~V~nlp~~~t~ 341 (450)
.- ...... +....+.........+.+ .... .............+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 43 222111 000000000000000000 0000 00000011122367999999999999
Q ss_pred HHHHHhccccCceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCC
Q 013061 342 EDLREPFSQFGEILSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGK 391 (450)
Q Consensus 342 ~~L~~~F~~~G~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g 391 (450)
+++.+.|..+|.|.+.++.. ....|.|+|.. ......|+. ++|.++.=
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~-qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRK-QTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhh-hhhHHHHHH-hcchhhhh
Confidence 99999999999999887764 35688899987 666667776 67887763
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.09 E-value=1.1e-05 Score=74.08 Aligned_cols=82 Identities=27% Similarity=0.354 Sum_probs=70.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEE--------EEeeC------CCcEEEEEeecCHHHHHHHHHHhcCCee
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILS--------VKIPV------GKGCGFVQFANSRKDAEVALQKLQGTAI 389 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~--------v~i~~------~~g~afV~F~~~~~~A~~A~~~l~g~~~ 389 (450)
.....+|||-+||..+++++|.++|.++|.|.. |.|-+ .++.|.|+|.+ ...|+.|+.-++++.|
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D-~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYED-PPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecC-hhhhhhhhhhhccccc
Confidence 556679999999999999999999999988744 22322 36999999999 9999999999999999
Q ss_pred CCeEEEEEeccCCCCCC
Q 013061 390 GKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 390 ~g~~l~v~~~~~~~~~~ 406 (450)
.+..|+|.++....+..
T Consensus 142 ~gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGVE 158 (351)
T ss_pred cCCCchhhhhhhccCcc
Confidence 99999999998766444
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.03 E-value=6.2e-07 Score=83.13 Aligned_cols=155 Identities=16% Similarity=0.301 Sum_probs=114.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
..|||+||.+.++..||+.+|...-.-.+-.++.. .||+||.+.+..-|.+|++.++++.- ..+..+.+...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccchh
Confidence 36899999999999999999976422222222221 26999999999999999999988642 123333332221
Q ss_pred ccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEe-ecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 013061 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 274 (450)
. ....++++-|.|+|+...++-|..++. .||.++.+..+ .+.++ -..-|+|...+.+..||.+|++.
T Consensus 75 ~-------kkqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 75 P-------KKQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred h-------HHHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcch
Confidence 1 122356789999999999999999996 99999988654 22221 12346889999999999999999
Q ss_pred eecCccEEEeecCCC
Q 013061 275 YCSSRPMRIDVATPK 289 (450)
Q Consensus 275 ~~~g~~i~v~~~~~~ 289 (450)
.+....+++.|....
T Consensus 143 Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhhhcccCchh
Confidence 999999999886544
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.78 E-value=2.1e-05 Score=72.18 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=75.7
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCee--------EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 277 (450)
....+|||.+|+..+++++|.++|. .++.|. .|.|.+|++|+++|+-|.|.|.+...|++|+..+++..|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 3456899999999999999999994 888875 3788899999999999999999999999999999999999
Q ss_pred CccEEEeecCCCC
Q 013061 278 SRPMRIDVATPKK 290 (450)
Q Consensus 278 g~~i~v~~~~~~~ 290 (450)
+..|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887654
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.78 E-value=0.00013 Score=52.51 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=46.1
Q ss_pred ceEEECCCCCCCCHHHHHH----HHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 209 LSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~----~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..|+|.|||.+.+...|+. ++....|.|..|. .+.|+|.|.+.+.|.+|.+.|++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999998877654 4422345555541 2479999999999999999999999999999999
Q ss_pred ecCCC
Q 013061 285 VATPK 289 (450)
Q Consensus 285 ~~~~~ 289 (450)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98544
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=5.5e-05 Score=50.69 Aligned_cols=52 Identities=35% Similarity=0.613 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHH
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVAL 381 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~ 381 (450)
+.|-|.+.+.+.. ++|..+|..||.|.++.+.......+|+|.+ +.+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~-~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKS-RKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECC-HHHHHhhC
Confidence 4678888887775 4556688899999999999888999999999 99999885
No 158
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.72 E-value=8.4e-06 Score=75.14 Aligned_cols=155 Identities=10% Similarity=0.073 Sum_probs=106.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecC---CCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...|.|.||.+.+|.+.+..||...|.|.++.++... .-......|||.|.|...+..|-. |....+-.+- .|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdra-liv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRA-LIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeee-EEEE
Confidence 3489999999999999999999999999999998743 223456789999999999988874 3333331110 0111
Q ss_pred ccccc--------------c--------------CCCC----------------------cccCCCCceEEECCCCCCCC
Q 013061 192 NWATF--------------S--------------GSDR----------------------RTEACSDLSIFVGDLAPDVT 221 (450)
Q Consensus 192 ~~~~~--------------~--------------~~~~----------------------~~~~~~~~~l~v~nl~~~~t 221 (450)
.+... . .... .....-.++++|.+|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 00000 0 0000 00011136799999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec
Q 013061 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (450)
Q Consensus 222 ~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 277 (450)
..++.+.| +.+|+|....+--. ...-+|.|+|........|+. .++..+.
T Consensus 165 l~e~~e~f-~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESF-ERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhh-hhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999 59999887655432 233467799998888888886 6666664
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.70 E-value=3.1e-05 Score=70.28 Aligned_cols=71 Identities=23% Similarity=0.447 Sum_probs=63.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC--CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCC
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 185 (450)
..++||+||-|.+|++||.+.+...| .+.+++++.++.+|.+||||+|..-+..+.++.++-|-.+.+.+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 44799999999999999999998877 688899999999999999999999999999999998887777553
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.69 E-value=9.3e-05 Score=57.53 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=39.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCC
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 180 (450)
+.|.|.++...++.++|+++|+.||.|.-|.+.+... .|||.|.+.++|.+|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 4689999999999999999999999998888876543 6999999999999999887654
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.66 E-value=0.00013 Score=68.33 Aligned_cols=64 Identities=30% Similarity=0.362 Sum_probs=56.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-------------------CcEEEEEeecCHHHHHHHHHH
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-------------------KGCGFVQFANSRKDAEVALQK 383 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-------------------~g~afV~F~~~~~~A~~A~~~ 383 (450)
.+..+++|.+.|||.+-.-+-|.++|..+|.|..|+|+.. +-+|+|+|++ .+.|.+|.+.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~-~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEE-VEAARKAREL 305 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhh-hHHHHHHHHh
Confidence 3457899999999999989999999999999999999752 4689999999 9999999998
Q ss_pred hcCC
Q 013061 384 LQGT 387 (450)
Q Consensus 384 l~g~ 387 (450)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8544
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=64.13 Aligned_cols=100 Identities=18% Similarity=0.391 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCCCCCCCcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCC
Q 013061 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG 248 (450)
Q Consensus 169 ~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~ 248 (450)
-|..|...|++... .++.++|.++. ...|+|.||...++.+.+.+.|+ .||+|+...++.|. .+
T Consensus 6 ~ae~ak~eLd~~~~--~~~~lr~rfa~------------~a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD~-r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP--KGRSLRVRFAM------------HAELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVDD-RG 69 (275)
T ss_pred HHHHHHHhcCCCCC--CCCceEEEeec------------cceEEEEecchhhhhHHHHHhhh-hcCccchheeeecc-cc
Confidence 46777778899988 66788888775 25899999999999999999995 99999998888874 48
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhCCcee----cCccEEEe
Q 013061 249 RTKGYGFVRFGDENERSRAMTEMNGVYC----SSRPMRID 284 (450)
Q Consensus 249 ~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~v~ 284 (450)
+..+-++|.|.....|.+|+..++..-| .++++-|.
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 8889999999999999999988854333 34444444
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.64 E-value=0.00012 Score=66.26 Aligned_cols=72 Identities=19% Similarity=0.499 Sum_probs=61.9
Q ss_pred cEEEEecCCCCCCHHH----H--HHhccccCceEEEEeeCC---------CcEEEEEeecCHHHHHHHHHHhcCCeeCCe
Q 013061 328 ATIFVGALDSDVSDED----L--REPFSQFGEILSVKIPVG---------KGCGFVQFANSRKDAEVALQKLQGTAIGKQ 392 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~----L--~~~F~~~G~v~~v~i~~~---------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~ 392 (450)
+-+||-+|+..+-.|+ | .++|.+||.|..|.|-+. .--.||+|.+ .++|.+++...+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~-kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYST-KEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecc-hHHHHHHHHHhccccccCc
Confidence 5689999999987766 3 378999999999988652 1345999999 9999999999999999999
Q ss_pred EEEEEecc
Q 013061 393 TVRLSWGR 400 (450)
Q Consensus 393 ~l~v~~~~ 400 (450)
.|+.+|+.
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999988
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00015 Score=48.62 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=42.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHH
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 174 (450)
++.|-|.+.+.+..+. |..+|..||+|+++.+-... .+.||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 3578899999877764 55588899999998886333 37999999999999985
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.57 E-value=8.5e-05 Score=69.58 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEec---CCCCC----------cceeEEEEeccHHHHHHHHHHhc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN---KQTGQ----------SEGYGFVEFYSRAAAEKVLQSYS 178 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~g~----------~~g~afV~f~~~~~A~~A~~~l~ 178 (450)
+-.+++|.+.|||.+-..+.|.++|..+|.|..|+|+.. +.+.+ .+-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347899999999999999999999999999999999876 33222 24579999999999999998886
Q ss_pred CCCCCCCCCccee
Q 013061 179 GSLMPNTDQPFRL 191 (450)
Q Consensus 179 g~~~~~~~~~i~~ 191 (450)
..--+..+..+++
T Consensus 308 ~e~~wr~glkvkL 320 (484)
T KOG1855|consen 308 PEQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhhcchhhh
Confidence 6554444444444
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.54 E-value=0.00036 Score=53.30 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=53.9
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEE-------------eeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCe-
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVK-------------IPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQ- 392 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~-------------i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~- 392 (450)
.+.|.|.+.|.. ..+.|.++|++||+|.+.. +.....+..|+|++ +.+|.+||. .||+.|.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~-~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDN-PLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESS-HHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCC-HHHHHHHHH-hCCeEEcCcE
Confidence 456888888888 5677889999999998875 55667899999999 999999999 599999885
Q ss_pred EEEEEecc
Q 013061 393 TVRLSWGR 400 (450)
Q Consensus 393 ~l~v~~~~ 400 (450)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45577764
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.43 E-value=0.00013 Score=63.88 Aligned_cols=73 Identities=21% Similarity=0.379 Sum_probs=61.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCC--------CCcc----eeEEEEeccHHHHHHHHHHhcCCC
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT--------GQSE----GYGFVEFYSRAAAEKVLQSYSGSL 181 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------g~~~----g~afV~f~~~~~A~~A~~~l~g~~ 181 (450)
..-.||+++||+.+....|+++|+.||.|-.|.+-+...+ |.++ .-+||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999999876554 2322 348899999999999999999999
Q ss_pred CCCCC
Q 013061 182 MPNTD 186 (450)
Q Consensus 182 ~~~~~ 186 (450)
|.+..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 96643
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.37 E-value=0.00037 Score=62.11 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=51.5
Q ss_pred HHHHHHhccccCceEEEEeeCC-------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 341 DEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 341 ~~~L~~~F~~~G~v~~v~i~~~-------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
++++++.|++||.|..|.|... ---.||+|.. .+.|.+|+-.|||+.|+||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r-~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFER-VESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeecc-HHHHHHHHHhcCCceecceeeeheecc
Confidence 5778899999999999887642 2578999999 999999999999999999999887744
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.29 E-value=0.00096 Score=60.90 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCc--eEEEEeeC------CCcEEEEEeecCHHHHHHHHHHhcCCeeCCe-EE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGE--ILSVKIPV------GKGCGFVQFANSRKDAEVALQKLQGTAIGKQ-TV 394 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~--v~~v~i~~------~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~-~l 394 (450)
.....++||+||-|.+|++||.+.+...|. +.++++.. ++|+|+|-..+ ..+.++.++.|-.++|.|. .+
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~S-dAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNS-DAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecc-hHHHHHHHHhcccceecCCCCe
Confidence 334568999999999999999998877663 44555543 37999999988 7888889999999999985 45
Q ss_pred EEEecc
Q 013061 395 RLSWGR 400 (450)
Q Consensus 395 ~v~~~~ 400 (450)
.+.|.|
T Consensus 156 V~~~NK 161 (498)
T KOG4849|consen 156 VLSYNK 161 (498)
T ss_pred eeccch
Confidence 566655
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.20 E-value=0.0014 Score=59.65 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=64.8
Q ss_pred CceEEECCCCCCCCHHHH------HHHHhhcCCCeeEEEEeecCCCCC-ceeE--EEEEeCCHHHHHHHHHHhCCceecC
Q 013061 208 DLSIFVGDLAPDVTDSIL------QETFSSKYPSVKGAKVIIDSNTGR-TKGY--GFVRFGDENERSRAMTEMNGVYCSS 278 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l------~~~f~~~~g~i~~v~~~~~~~~~~-~~g~--afV~f~~~~~a~~A~~~l~~~~~~g 278 (450)
.+-+||-+|++.+..|++ .++|+ .||.|..|.+-+...+-. ..+. .||+|.+.++|.+||.+.++..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456899999998887773 47895 999999988876542111 1222 4999999999999999999999999
Q ss_pred ccEEEeecCCCC
Q 013061 279 RPMRIDVATPKK 290 (450)
Q Consensus 279 ~~i~v~~~~~~~ 290 (450)
|.|+..+...+.
T Consensus 193 r~lkatYGTTKY 204 (480)
T COG5175 193 RVLKATYGTTKY 204 (480)
T ss_pred ceEeeecCchHH
Confidence 999999987653
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.19 E-value=0.00015 Score=63.68 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=51.4
Q ss_pred HHHHHhcc-ccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 342 EDLREPFS-QFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 342 ~~L~~~F~-~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
++|...|+ +||.|+.+.|..+ +|.+||.|.. .++|.+|++.||++.+.|++|...|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~-Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRS-EEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhccc-HHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666665 8999999988765 6899999999 999999999999999999999999876
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.18 E-value=0.002 Score=52.29 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=52.9
Q ss_pred CCCCCcEEEEecCC-----CCCCH----HHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeE
Q 013061 323 GESNNATIFVGALD-----SDVSD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQT 393 (450)
Q Consensus 323 ~~~~~~~l~V~nlp-----~~~t~----~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~ 393 (450)
..++.-+|.|.=+. ..... .+|.+.|..||.|.-|++.. +.-+|+|.+ -+.|.+|+. |+|..+.|+.
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~d-g~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRD-GQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESS-CHHHHHHHH-GCCSEETTEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECc-cHHHHHHHc-cCCcEECCEE
Confidence 34445566666554 11223 36778889999999888885 589999999 899999988 8999999999
Q ss_pred EEEEeccC
Q 013061 394 VRLSWGRN 401 (450)
Q Consensus 394 l~v~~~~~ 401 (450)
|+|+...+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99998775
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.17 E-value=0.00029 Score=61.70 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=62.5
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCC--------CCce----eEEEEEeCCHHHHHHHHHHhCCc
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT--------GRTK----GYGFVRFGDENERSRAMTEMNGV 274 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~--------~~~~----g~afV~f~~~~~a~~A~~~l~~~ 274 (450)
....||+++||+.+...-|+++|+ .||.|-+|.+-....+ +.++ .-++|+|.+...|.++...||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456899999999999999999995 9999999998876554 2222 23799999999999999999999
Q ss_pred eecCccE
Q 013061 275 YCSSRPM 281 (450)
Q Consensus 275 ~~~g~~i 281 (450)
.|+|+.-
T Consensus 152 ~Iggkk~ 158 (278)
T KOG3152|consen 152 PIGGKKK 158 (278)
T ss_pred ccCCCCC
Confidence 9988653
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0015 Score=63.51 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCC--CCCHH----HHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 113 DETKTIWIGDLFH--WMDET----FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 113 ~~~~~l~V~nLp~--~~t~~----~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
.-...|+|-|+|- ...-+ -|..+|+++|+|+.+.+..+.. |.++||.|++|.+..+|..|++.|||+.+..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4556899999994 22222 3567899999999999988876 5599999999999999999999999998854
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.97 E-value=0.0018 Score=56.98 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHH
Q 013061 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDE 342 (450)
Q Consensus 263 ~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~ 342 (450)
-|..|..+|++....++.++|.|+.. ..|+|.||...++.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------a~l~V~nl~~~~snd 46 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------AELYVVNLMQGASND 46 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------------------ceEEEEecchhhhhH
Confidence 46777778999999999999999965 379999999999999
Q ss_pred HHHHhccccCceEEEEeeC-C----CcEEEEEeecCHHHHHHHHHHhcCCee
Q 013061 343 DLREPFSQFGEILSVKIPV-G----KGCGFVQFANSRKDAEVALQKLQGTAI 389 (450)
Q Consensus 343 ~L~~~F~~~G~v~~v~i~~-~----~g~afV~F~~~~~~A~~A~~~l~g~~~ 389 (450)
.|...|+.||.|....+.- + .+..+|+|.. .-.|.+|+......-|
T Consensus 47 ll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~-k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 47 LLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAK-KPNARKAARRCREGGF 97 (275)
T ss_pred HHHHhhhhcCccchheeeecccccccccchhhhhc-chhHHHHHHHhccCcc
Confidence 9999999999997755443 2 4789999999 8888999887754433
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.88 E-value=0.00052 Score=60.36 Aligned_cols=66 Identities=17% Similarity=0.345 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCC
Q 013061 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 223 ~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 289 (450)
++|...|+++||+|+++.|-.+. ...-.|-++|.|..+++|++|+..||+..+.|++|..+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 56667776699999998666553 2456788999999999999999999999999999999987543
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.00092 Score=65.35 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=68.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhcc-ccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCee---CCeEEEE
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFS-QFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAI---GKQTVRL 396 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~-~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~---~g~~l~v 396 (450)
+.....+++|+|.||-..+|.-.|+.++. ..|.|++..|.+=+..|||.|.+ .++|...+.+|||..+ +.+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss-~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSS-VEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEeccc-HHHHHHHHHHHhccccCCCCCceeEe
Confidence 34567789999999999999999999997 56777777444447899999999 9999999999999986 4789999
Q ss_pred EeccC
Q 013061 397 SWGRN 401 (450)
Q Consensus 397 ~~~~~ 401 (450)
.|...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 99884
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.67 E-value=0.011 Score=40.59 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=45.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc---CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHh
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHT---GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 177 (450)
..|+|+++. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999995 58888999999999 135688888886 3999999999999999764
No 179
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.005 Score=60.09 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=61.4
Q ss_pred CCCceEEECCCCCCCC------HHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec-C
Q 013061 206 CSDLSIFVGDLAPDVT------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-S 278 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t------~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g 278 (450)
.-..+|+|.|+|.--. ..-|.++|+ ++|.|....+..+.. |.++||.|++|.+..+|..|++.|||+.|+ +
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3456889999875211 234567885 999999999988876 459999999999999999999999999885 5
Q ss_pred ccEEEee
Q 013061 279 RPMRIDV 285 (450)
Q Consensus 279 ~~i~v~~ 285 (450)
+...|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 5666654
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.59 E-value=0.0066 Score=54.37 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCCeeEEEEeecCCCCC-ceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 222 DSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 222 ~~~l~~~f~~~~g~i~~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
++++++.+ ++||.|..|.|+..+.-.. -.--.||+|...++|.+|+-.|||+.|+|+.++..|-.-
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 46788999 5999999998887753221 123479999999999999999999999999999887654
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.48 E-value=0.0032 Score=61.73 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---cCccEE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPMR 282 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~i~ 282 (450)
..++.|+|.||-.-+|.-.|+++|....|.|++. ..|+. +..|||.|.+.++|.+.+.+||+..+ +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 4578999999999999999999997678888776 33332 45799999999999999999999887 567888
Q ss_pred EeecCCC
Q 013061 283 IDVATPK 289 (450)
Q Consensus 283 v~~~~~~ 289 (450)
+.|....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 8887644
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.23 E-value=0.015 Score=56.68 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=56.2
Q ss_pred CcEEEEecCCCCCCHHHHHHhccc--cCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcC--CeeCCeEEEEE
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQ--FGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQG--TAIGKQTVRLS 397 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~--~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g--~~~~g~~l~v~ 397 (450)
.|+|.|+.||..+.+|+|+.+|+. +-++.+|++-.+ ...||+|++ ..||..|.+.|.. ++|.|+.|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfes-d~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFES-DTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeec-chhHHHHHHHHHHHHHhhcCcchhhh
Confidence 478899999999999999999964 678899998764 578999999 9999999988753 34666665443
No 183
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.08 E-value=0.025 Score=43.29 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEE-EeecC------CCCCceeEEEEEeCCHHHHHHHHHHhCCceecCc
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDS------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~-~~~~~------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 279 (450)
.++-|.|-+.|+. ....|.+.| +.||+|.+.. +.++. ..........|+|++..+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F-~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHF-SSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHH-HCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHH-HhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 3456888899887 556788899 4999998774 11110 001123478999999999999996 899999875
Q ss_pred -cEEEeecC
Q 013061 280 -PMRIDVAT 287 (450)
Q Consensus 280 -~i~v~~~~ 287 (450)
.+-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 45566663
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.06 E-value=0.026 Score=40.89 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcC
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 179 (450)
...+|+ .|..+...||.++|+.||.| .|..+.|. -|||...+.+.|..++..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 356665 99999999999999999985 56666664 599999999999999988753
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.85 E-value=0.021 Score=49.08 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=49.8
Q ss_pred CHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc--CCeeCCeEEEEEeccCC
Q 013061 340 SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ--GTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 340 t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~ 402 (450)
..+.|+++|..|+.+..+.++++-+-..|.|.+ .++|.+|...|+ +..+.|..|+|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~-~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFES-PESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SS-TTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCC-HHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999999999999999999999 999999999999 99999999999999643
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.80 E-value=0.045 Score=43.89 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=57.4
Q ss_pred CCCCCcEEEEecCCCCC----CHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 323 GESNNATIFVGALDSDV----SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~----t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
..++-.+|.|.=|..++ +...|...++.||.|.+|.+. ++..|.|.|.| ..+|-+|+.+++. ..-|..+.++|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d-~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKD-ITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehh-hHHHHHHHHhhcC-CCCCceEEeec
Confidence 34556788887665554 334455667899999998876 47899999999 9999999999876 56678888887
Q ss_pred cc
Q 013061 399 GR 400 (450)
Q Consensus 399 ~~ 400 (450)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.78 E-value=0.044 Score=37.63 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHhcccc---CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHh
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQF---GEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~---G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l 384 (450)
....|+|.++. .++.++|+.+|..| .....|+.+.+ ..|=|-|.+ .+.|.+|+.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d-~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKD-EETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECC-HHHHHHHHHcC
Confidence 34689999984 57888999999988 23567887765 567788989 99999999865
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.76 E-value=0.12 Score=40.32 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=50.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCC
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 183 (450)
.+..+-+...|+.++.++|..+...+- .|..++|++|.. .++-.++++|.+.++|....+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455555556666777776666654 577899999854 35567999999999999999999999884
No 189
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.66 E-value=0.016 Score=60.16 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 013061 416 NGAHYGGQGYSGNGYAFPPNQDPNMYAATAVPGAS 450 (450)
Q Consensus 416 ~g~~~g~~g~g~~g~~~~~~~~~~~~~~~~~~~~~ 450 (450)
.|++|+++|||++|||+-..+-+..||++..+|+|
T Consensus 1194 YGggys~gGygsGGYGgsa~~~~~~~Gagvg~Gyr 1228 (1282)
T KOG0921|consen 1194 YGGGYSGGGYGSGGYGGSAPSARANYGAGVGNGYR 1228 (1282)
T ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCccccccCCCc
Confidence 34555567778888888877777778887666653
No 190
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.65 E-value=0.042 Score=44.77 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCC
Q 013061 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 224 ~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 291 (450)
+|.+.|. .||++.=++++.+ .-+|+|.+-+.|.+|+. +++..++|+.|+|+...+.=.
T Consensus 52 ~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 6778884 8998887776644 36999999999999996 999999999999998876543
No 191
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.50 E-value=0.013 Score=60.01 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=64.7
Q ss_pred EEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCee--CCeEEEEEeccCCC
Q 013061 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAI--GKQTVRLSWGRNPG 403 (450)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~~ 403 (450)
+..+.|.+-..+-..|..+|+.||.|.+.+.+++-..|.|+|.. .+.|..|+++|+|+++ -|.+.+|.|++.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s-~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSS-VESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHH-HHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 44555556667788899999999999999999999999999999 9999999999999986 48899999999644
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=0.047 Score=49.38 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=54.5
Q ss_pred EEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeE-EEEEeccC
Q 013061 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQT-VRLSWGRN 401 (450)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~-l~v~~~~~ 401 (450)
=|-|.++|..- ..-|..+|++||.|++.....+-.+-+|.|.+ +-+|.+||.+ ||+.|+|.. |-|.-..+
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYss-r~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSS-RTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecc-hhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 45555666554 35678999999999998888777899999999 9999999995 999998754 44555443
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.33 E-value=0.014 Score=50.12 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=45.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-cCCc---eEEEEEecCCCCC--cceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSH-TGQV---VNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
....+|.||+||+.+|++++.+.++. ++.- ..+.-.....+-+ ...-|||.|.+.+++......++|..+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 35569999999999999999997776 5554 2232112211111 224599999999999999999999776
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.32 E-value=0.1 Score=37.93 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=40.3
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ 385 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~ 385 (450)
.+.+|. .|......||.++|+.||.|. |..+. ...|||...+ .+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~-dTSAfV~l~~-r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN-DTSAFVALHN-RDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEEC-TTEEEEEECC-CHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc-CCcEEEEeec-HHHHHHHHHHhc
Confidence 355555 999999999999999999875 33333 4799999999 999999888875
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.31 E-value=0.011 Score=56.69 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=63.7
Q ss_pred CCCcEEEEecCCCCC-CHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 325 SNNATIFVGALDSDV-SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~-t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
...+.|-+.-+|... +.++|..+|.+||.|..|.+..+.-.|.|+|.+ ..+|-.|.. .++..|+++.|+|.|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t-~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKT-RAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeec-cccccchhc-cccceecCceeEEEEecCC
Confidence 344566666666664 568899999999999999998877899999999 899977765 6999999999999999873
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.29 E-value=0.1 Score=50.02 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=59.4
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecC
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 278 (450)
++.|+|-.+|..++..||..++....-.|.++++++|... .+-..+|+|.+..+|......+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999999756667999999997543 34478999999999999999999998743
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.25 E-value=0.37 Score=43.75 Aligned_cols=161 Identities=10% Similarity=0.143 Sum_probs=99.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecC-------CCCCcceeEEEEeccHHHHHHHHH----HhcC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-------QTGQSEGYGFVEFYSRAAAEKVLQ----SYSG 179 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~f~~~~~A~~A~~----~l~g 179 (450)
...-+|.|...|+..+++-.++...|-+||+|++|.++.+. +..+......+-|-+.+.+-.... .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999876 122344578999999988765542 2221
Q ss_pred CCCCCCCCcceeccccccCCC---------------------CcccCCCCceEEECCCCCCCCHHHH-HHHHh--hcCC-
Q 013061 180 SLMPNTDQPFRLNWATFSGSD---------------------RRTEACSDLSIFVGDLAPDVTDSIL-QETFS--SKYP- 234 (450)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~~~~l~v~nl~~~~t~~~l-~~~f~--~~~g- 234 (450)
..-.-....+.+.+....... .-.....+|.|.|.- ...+.++++ .+.+. ..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCC
Confidence 110012233333333311000 002234566777743 344534443 33321 1222
Q ss_pred ---CeeEEEEeecCC--CCCceeEEEEEeCCHHHHHHHHHHhC
Q 013061 235 ---SVKGAKVIIDSN--TGRTKGYGFVRFGDENERSRAMTEMN 272 (450)
Q Consensus 235 ---~i~~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~ 272 (450)
.+++|.++.... ..-++.||.++|-+..-|.+.++-+.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 256677764322 33467899999999999999887665
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.19 E-value=0.05 Score=43.61 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCC-HHH---HHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCC
Q 013061 112 NDETKTIWIGDLFHWMD-ETF---LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t-~~~---l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~ 187 (450)
+.+-.+|.|+=|..++. .+| |...++.||+|.+|.+.-.. .|.|.|+|..+|.+|+.++..... +.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~p---gt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAP---GT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCC---Cc
Confidence 34556899987776653 344 44566889999999875432 499999999999999998776433 45
Q ss_pred cceecccc
Q 013061 188 PFRLNWAT 195 (450)
Q Consensus 188 ~i~~~~~~ 195 (450)
.+.+.|..
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 56666654
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.14 E-value=0.24 Score=38.70 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=49.4
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 277 (450)
...+.+...|..++.++|..+.+..-..|..++|++|.. .++-.++++|.+.++|.+....+||+.|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334445555566666677666643344577888988743 35668999999999999999999998874
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.06 E-value=0.016 Score=57.93 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
.+..+|||+|+...+..+-++.+...||-|.+++.+. |+|.+|.....+.+|+..++-..+.+.....++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4667999999999999999999999999887776654 899999999999999988877776555555544
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.99 E-value=0.047 Score=53.46 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhc--cCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 179 (450)
.....|.|+|+.||..+-.|+|+.||+. |-.+.+|.+-.+.+ =||+|++..+|..|.+.|..
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHH
Confidence 3455678999999999999999999965 77889999877643 69999999999999877653
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.96 E-value=0.016 Score=59.43 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~ 196 (450)
+.++.|.+-..+..-|..+|..||.|.+++.+++-+ .|.|+|.+.+.|..|++.|.|+.+...+.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445555566778888999999999999999999865 69999999999999999999999988889999988875
Q ss_pred c
Q 013061 197 S 197 (450)
Q Consensus 197 ~ 197 (450)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.17 E-value=0.018 Score=53.01 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=60.4
Q ss_pred cEEEEecCCCCCCHHHHH---HhccccCceEEEEeeCCC---------cEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 328 ATIFVGALDSDVSDEDLR---EPFSQFGEILSVKIPVGK---------GCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~---~~F~~~G~v~~v~i~~~~---------g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
+-+||-+|+..+..+.+. +.|.+||.|..|.+.++. ..++|+|.. .++|..||...+|..++|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~-~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEE-EEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccc-hHhhhhHHHHhhhHHhhhhhhH
Confidence 457788888887665554 578889999999887632 468999998 9999999999999999999999
Q ss_pred EEeccC
Q 013061 396 LSWGRN 401 (450)
Q Consensus 396 v~~~~~ 401 (450)
..|+..
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 888774
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.92 E-value=0.27 Score=47.26 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=58.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
++.|.|--+|..+|..||..|+..+- .|.++++++|... ++-.++|+|++.++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 88999999999999999999997654 6899999997643 34468999999999999999999998843
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.84 E-value=0.085 Score=45.28 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhc-CCCe---eEEEEeecCC--CCCceeEEEEEeCCHHHHHHHHHHhCCceecCc-
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSK-YPSV---KGAKVIIDSN--TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR- 279 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~-~g~i---~~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~- 279 (450)
...+|.|+.||+.+|++++.+.++ . +++. ..+.-..... ....-..|||.|.+.+++..-+..++|+.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 345899999999999999999774 4 5554 3333112211 112234699999999999999999999887443
Q ss_pred ----cEEEeecCC
Q 013061 280 ----PMRIDVATP 288 (450)
Q Consensus 280 ----~i~v~~~~~ 288 (450)
...|+++--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 344555543
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.66 E-value=0.26 Score=34.43 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=46.3
Q ss_pred CCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 338 DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 338 ~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
.++.++|+..+..|+ -.+|..++.--||.|.| .++|+++....+++.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~tGfYIvF~~-~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRTGFYIVFND-SKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCCEEEEEECC-hHHHHHHHHhcCCCEEEEEEEEe
Confidence 477899999999984 34555667788999999 99999999999999998888765
No 207
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.52 E-value=2.1 Score=39.04 Aligned_cols=172 Identities=9% Similarity=0.095 Sum_probs=101.8
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCC-------CCCceeEEEEEeCCHHHHHHHHH----HhC
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN-------TGRTKGYGFVRFGDENERSRAMT----EMN 272 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~----~l~ 272 (450)
+...+|.|.+.|+..+++-.++...|- .||+|++|.++.+.. ..+......+-|-+.+.|..-.. .|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344577899999999999999989984 999999999997751 12233567889999988765532 233
Q ss_pred C--ceecCccEEEeecCCCCCCcccc--cchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHH-HHH-
Q 013061 273 G--VYCSSRPMRIDVATPKKASGYQQ--QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDED-LRE- 346 (450)
Q Consensus 273 ~--~~~~g~~i~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~-L~~- 346 (450)
. ..+....+.+.+..-+....... ......... ...-.-.-......+.|.|.-- ..+..++ |.+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~--------~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~k 160 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYL--------VASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKK 160 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHH--------hhhhhheeecCCcceEEEEEec-CccchhHHHHHh
Confidence 2 33566777777765432221110 000000000 0000001122344567777644 4443333 333
Q ss_pred --hccccC----ceEEEEeeC--------CCcEEEEEeecCHHHHHHHHHHhcC
Q 013061 347 --PFSQFG----EILSVKIPV--------GKGCGFVQFANSRKDAEVALQKLQG 386 (450)
Q Consensus 347 --~F~~~G----~v~~v~i~~--------~~g~afV~F~~~~~~A~~A~~~l~g 386 (450)
++..-+ .+++|.|+. .+.+|.++|-+ ...|...++.|.-
T Consensus 161 L~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFln-IsMAiEV~dYlk~ 213 (309)
T PF10567_consen 161 LPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLN-ISMAIEVLDYLKS 213 (309)
T ss_pred hhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehh-HHhHHHHHHHHHh
Confidence 222223 457777764 25899999999 9998888877753
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.14 E-value=0.19 Score=37.36 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=46.4
Q ss_pred EEEEeCCHHHHHHHHHHhCC-ceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEE
Q 013061 254 GFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFV 332 (450)
Q Consensus 254 afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 332 (450)
|+|+|.+..-|...++.-.. ..+++..+.|....-..... ...........++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~-----------------------~k~qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL-----------------------QKFQVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc-----------------------eEEEEEEcccCCEEEE
Confidence 68999999999998863222 33456666665432211110 0001123345679999
Q ss_pred ecCCCCCCHHHHHHhcc
Q 013061 333 GALDSDVSDEDLREPFS 349 (450)
Q Consensus 333 ~nlp~~~t~~~L~~~F~ 349 (450)
.|||...++++|++.++
T Consensus 58 sgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCCCCCCChhhheeeEE
Confidence 99999999999998765
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.87 E-value=0.48 Score=34.17 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCCCHHHHHHhccccC-----ceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 337 SDVSDEDLREPFSQFG-----EILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 337 ~~~t~~~L~~~F~~~G-----~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
..++..+|..++...+ .|-+|+|.. .++||+-.. +.|..++..|++..+.|+.|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~--~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE--EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T--T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH--HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3477788888776553 456777774 599999865 7899999999999999999999864
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.40 E-value=0.059 Score=49.78 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=62.9
Q ss_pred CceEEECCCCCCCCHHHHH---HHHhhcCCCeeEEEEeecCC--CC-CceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 208 DLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSN--TG-RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~---~~f~~~~g~i~~v~~~~~~~--~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
.+.+||-+|+..+..+++. +.|. .||.|..|.+.++.. .+ .....++|+|..+++|..||..+++..++++.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4567888898887766664 5674 788899888887652 11 112238999999999999999999999999998
Q ss_pred EEeecCCCC
Q 013061 282 RIDVATPKK 290 (450)
Q Consensus 282 ~v~~~~~~~ 290 (450)
+..+.+++.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 888877664
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.98 E-value=0.14 Score=38.00 Aligned_cols=69 Identities=13% Similarity=0.264 Sum_probs=43.0
Q ss_pred EEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccccCCC--C--cccCCCCceEEECCCCCCCCHHHHHHHH
Q 013061 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSD--R--RTEACSDLSIFVGDLAPDVTDSILQETF 229 (450)
Q Consensus 160 afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~--~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f 229 (450)
|+|+|.++.-|.+.++. ....+......+++......... + -......++|.|.|||..+++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999964 22222222222333222211111 1 0234567889999999999999988877
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.26 E-value=1.5 Score=45.88 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=46.3
Q ss_pred CCCCHHHHHHhccccCce-----EEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 337 SDVSDEDLREPFSQFGEI-----LSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 337 ~~~t~~~L~~~F~~~G~v-----~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
..++..+|..++..-+.| -.|+|. ..+.||+.. ...|...+..|++..+.|+.|.|+.++
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELP--KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcC--hhhHHHHHHHhccccccCCceEEEECC
Confidence 447778887777655444 445555 468999985 488899999999999999999999875
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=2.1 Score=42.65 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhcc----CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCC
Q 013061 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 185 (450)
....+++|-|-||.| .+..+||.-+|+.| |.|.+|.|..... |+ .+.+-+..+|..+
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-Gk--------------eRM~eEeV~GP~~--- 231 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-GK--------------ERMKEEEVHGPPK--- 231 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-hH--------------HHhhhhcccCChh---
Confidence 356789999999999 67899999999876 5788998877532 11 1112222233222
Q ss_pred CCcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHH
Q 013061 186 DQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERS 265 (450)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~ 265 (450)
.+.... ...+... -....-++-.++.+. .|+ +.+++- -||.|+|.+.+.|.
T Consensus 232 ----el~~~~--------e~~~~s~-----sD~ee~~~~~~~kLR-~Yq-~~rLkY----------YyAVvecDsi~tA~ 282 (650)
T KOG2318|consen 232 ----ELFKPV--------EEYKESE-----SDDEEEEDVDREKLR-QYQ-LNRLKY----------YYAVVECDSIETAK 282 (650)
T ss_pred ----hhcccc--------ccCcccc-----cchhhhhhHHHHHHH-HHH-hhhhee----------EEEEEEecCchHHH
Confidence 111000 0000000 011111122345552 443 233322 28999999999999
Q ss_pred HHHHHhCCceecCcc--EEEeec
Q 013061 266 RAMTEMNGVYCSSRP--MRIDVA 286 (450)
Q Consensus 266 ~A~~~l~~~~~~g~~--i~v~~~ 286 (450)
+....|+|..|.... +-++|.
T Consensus 283 ~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 283 AVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHhcCcceeccccceeeeeec
Confidence 999999999996544 444444
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.33 E-value=0.6 Score=42.51 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=46.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
..=|-|-+.|+.-.. -|..+|.+||.|++...-... .+-+|.|.+.-+|.+||.+ +|++|.+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhh-cCeeecc
Confidence 345777788775443 577899999999776554222 3899999999999999975 8888744
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.12 E-value=0.86 Score=39.31 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=46.1
Q ss_pred CHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC--CceecCccEEEeecCCCC
Q 013061 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 221 t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~i~v~~~~~~~ 290 (450)
..+.|+++|. .++.+..+..++.-. -..|.|.+.++|.+|...|+ +..+.|..+++.++....
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHH-hcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999995 999999888876532 58899999999999999999 899999999999985543
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=1.4 Score=43.79 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=63.3
Q ss_pred CCCCCCcEEEEecCCCC-CCHHHHHHhcccc----CceEEEEeeCC----------------------------------
Q 013061 322 DGESNNATIFVGALDSD-VSDEDLREPFSQF----GEILSVKIPVG---------------------------------- 362 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~----G~v~~v~i~~~---------------------------------- 362 (450)
.....++.|-|-||.|+ +..++|.-+|+.| |.|.+|.|.++
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34566789999999998 8899999998877 68999988531
Q ss_pred ----------C---------cEEEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEecc
Q 013061 363 ----------K---------GCGFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWGR 400 (450)
Q Consensus 363 ----------~---------g~afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~ 400 (450)
| =+|.|+|.+ .+.|.+.....+|.+|.. ..|-+.|-.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDs-i~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDS-IETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecC-chHHHHHHHhcCcceeccccceeeeeecC
Confidence 0 278999999 999999999999999984 556666644
No 217
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=88.68 E-value=1.3 Score=34.20 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccccCCCC
Q 013061 122 DLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR 201 (450)
Q Consensus 122 nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~~ 201 (450)
-||+.++. |.++|+.-|.|.+|..+..-. + ..|+-.++|..-...+ .|++..........
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvtqyp-------------d----ndal~~~~G~lE~vDg-~i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVTQYP-------------D----NDALLYVHGTLEQVDG-NIRIGSGQTPASVR 69 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEeccC-------------C----chhhheeeeehhhccC-cEEEccCCCcccEE
Confidence 37777765 999999999999986654321 1 1233334443322122 24443222111111
Q ss_pred cc-cCCCCceEEECCCCCCCCHHHHHHHHhhc--CCCeeEEEEeecCCCCCceeEEEEEeCCHH
Q 013061 202 RT-EACSDLSIFVGDLAPDVTDSILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (450)
Q Consensus 202 ~~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--~g~i~~v~~~~~~~~~~~~g~afV~f~~~~ 262 (450)
-. ....++.+ --|+.+|..+++++|++. |-.|.+-.+.+|-...-+-..||..|....
T Consensus 70 i~gTPsgnnv~---F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 70 IQGTPSGNNVI---FPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EecCCCCCcee---cCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 11 11122222 347789999999999753 444555455555433334557898887653
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.62 E-value=2.6 Score=29.46 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 219 ~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.++-++++..| +.|. ..+|. .|+ + | -||.|.+..+|++|....++..+....+.+
T Consensus 11 ~~~v~d~K~~L-r~y~-~~~I~--~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRL-RKYR-WDRIR--DDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHH-hcCC-cceEE--ecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56788999999 5886 44443 332 2 2 589999999999999999998887666554
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.00 E-value=2.5 Score=30.41 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHhhcCC----CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 218 PDVTDSILQETFSSKYP----SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g----~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++..+|..++.+..| .|-.|.+..+ |+||+-... .|..+++.|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788899999964332 2445666543 789987766 788899999999999999999864
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.15 E-value=0.54 Score=39.55 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCCCCH-----HHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCe-EEEEEec
Q 013061 326 NNATIFVGALDSDVSD-----EDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQ-TVRLSWG 399 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~-----~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~-~l~v~~~ 399 (450)
..+.+.+.+++..+.. .....+|..|.+..-..++++.+..-|-|.+ .+.|..|..+++.+.|.|+ .+++-|+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~-p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSN-PEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccC-hhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 3456777778776532 3345677777777777888888999999999 9999999999999999998 8888888
Q ss_pred cCCC
Q 013061 400 RNPG 403 (450)
Q Consensus 400 ~~~~ 403 (450)
.+.-
T Consensus 88 Q~~~ 91 (193)
T KOG4019|consen 88 QPGH 91 (193)
T ss_pred cCCC
Confidence 7643
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.80 E-value=0.57 Score=47.30 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
....++..++||+|+-+.+..+-++.+...+|.|.++.... |+|++|.. ...+..|+..++-..++|..+.+.-
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~-~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLK-HIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhh-HHHHHHHHHHhcccCCCcchhhccc
Confidence 34456778999999999999999999999999998877664 99999999 9999999999999999887776654
No 222
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.46 E-value=0.43 Score=46.14 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=52.0
Q ss_pred CHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCC
Q 013061 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 221 t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 290 (450)
+.++|...|. .||.|+.|.+-.... .|.|+|.+..+|-+|.. .++-.|+++.|+|.|..+..
T Consensus 386 t~a~ln~hfA-~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFA-QFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhh-hcCccccccccCchh------hheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 5678999996 999999998765533 68999999999977764 78899999999999998754
No 223
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=86.28 E-value=0.9 Score=45.00 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=10.3
Q ss_pred hhhhhhhhccCCCCCCCCC
Q 013061 11 AAAAAAAAVSGGAGGGSQP 29 (450)
Q Consensus 11 ~~~~~~~~~~~~~~~~~q~ 29 (450)
..|+-.+++...+.++-|.
T Consensus 131 gtA~~~~av~s~~~P~tq~ 149 (742)
T KOG4274|consen 131 GTAPHSMAVVSTATPQTQL 149 (742)
T ss_pred ccchhHHHHhccCCCCccc
Confidence 4455555566666665333
No 224
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.91 E-value=0.22 Score=49.75 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=8.2
Q ss_pred cCCCCcchhhhhhhhccCC
Q 013061 4 SNGGDANAAAAAAAAVSGG 22 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (450)
..|-.+|+-.--.-+.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~~~ 57 (1179)
T KOG3648|consen 39 GQGPGANFVSFVGQAGGGG 57 (1179)
T ss_pred CCCCCcchhhhccccCCCC
Confidence 3444555544433333333
No 225
>COG4371 Predicted membrane protein [Function unknown]
Probab=81.00 E-value=2.9 Score=37.13 Aligned_cols=19 Identities=53% Similarity=1.153 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 013061 415 WNGAHYGGQGYSGNGYAFP 433 (450)
Q Consensus 415 ~~g~~~g~~g~g~~g~~~~ 433 (450)
..||+|++++|+|+||+.|
T Consensus 73 psGGgY~gg~Y~GGGfgfP 91 (334)
T COG4371 73 PSGGGYSGGGYSGGGFGFP 91 (334)
T ss_pred CCCCCCCCCCCCCCCcCcC
Confidence 3445555566666666655
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.23 E-value=3.7 Score=37.15 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=39.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCce-EEEEeeCCCcEEEEEeec
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEI-LSVKIPVGKGCGFVQFAN 372 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v-~~v~i~~~~g~afV~F~~ 372 (450)
.....|+|.||+.++...||+..+.+-+.+ .++...-..+.||++|.|
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGN 376 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCC
Confidence 345679999999999999999999776654 556666568999999977
No 227
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=76.24 E-value=4.1 Score=43.29 Aligned_cols=15 Identities=33% Similarity=0.860 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCCC
Q 013061 412 SNHWNGAHYGGQGYS 426 (450)
Q Consensus 412 ~~~~~g~~~g~~g~g 426 (450)
+++++++++|++|||
T Consensus 1195 Gggys~gGygsGGYG 1209 (1282)
T KOG0921|consen 1195 GGGYSGGGYGSGGYG 1209 (1282)
T ss_pred CCCCCCCCcCCCCCC
Confidence 333444444443333
No 228
>COG4371 Predicted membrane protein [Function unknown]
Probab=73.95 E-value=4.5 Score=35.92 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 013061 413 NHWNGAHYGGQGYSGNGYAFPPNQDPNMYAATA 445 (450)
Q Consensus 413 ~~~~g~~~g~~g~g~~g~~~~~~~~~~~~~~~~ 445 (450)
+.+.++++.|+||++++|++.++.-|-.-+..+
T Consensus 66 r~YS~~gpsGGgY~gg~Y~GGGfgfPfiip~~G 98 (334)
T COG4371 66 RGYSGGGPSGGGYSGGGYSGGGFGFPFIIPGGG 98 (334)
T ss_pred CCcCCCCCCCCCCCCCCCCCCCcCcCeEeccCC
Confidence 344445555667777777777666665544433
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.59 E-value=3 Score=34.70 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccc
Q 013061 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY 298 (450)
Q Consensus 219 ~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~ 298 (450)
..+-..|.+.+.+..+....+.+..-. .++..+.|.+.+++.++++ .....+.+..+.+...++.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~----- 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPS----- 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccc-----
Confidence 466777777775444544344443221 3588999999999999886 44556777777777665432210
Q ss_pred hhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCC-CCHHHHHHhccccCceEEEEeeCC
Q 013061 299 SSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVG 362 (450)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~v~i~~~ 362 (450)
.........=|.|.+||.. .+++-|+.+.+.+|.+.++.....
T Consensus 97 ---------------------~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 97 ---------------------EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ---------------------ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 0111122334677899988 677888999999999999987653
No 230
>COG4907 Predicted membrane protein [Function unknown]
Probab=72.01 E-value=3.7 Score=39.87 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=22.2
Q ss_pred HHHHHHhccccC-----ceEEEEeeCCC---cEEEEEeecCHHHHHHHHHHhcCCe
Q 013061 341 DEDLREPFSQFG-----EILSVKIPVGK---GCGFVQFANSRKDAEVALQKLQGTA 388 (450)
Q Consensus 341 ~~~L~~~F~~~G-----~v~~v~i~~~~---g~afV~F~~~~~~A~~A~~~l~g~~ 388 (450)
++..+++++.|- .+++|++..+- +.|.- = .+...+|++.++..+
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~ylVYatALG---V-~dkVvkam~~~~~~e 539 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQYLVYATALG---V-SDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhc---c-HHHHHHHHHHhCcHh
Confidence 455556655553 45666665431 22221 1 355666776665554
No 231
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=70.73 E-value=6.1 Score=36.89 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=9.4
Q ss_pred EEECCCCCCCCHHHHHHHH
Q 013061 211 IFVGDLAPDVTDSILQETF 229 (450)
Q Consensus 211 l~v~nl~~~~t~~~l~~~f 229 (450)
|-+...|.++++-.|.+-+
T Consensus 152 L~~~k~p~Nin~~~lfe~i 170 (465)
T KOG3973|consen 152 LNFPKQPGNINEWKLFETI 170 (465)
T ss_pred cCCCCCCCCchHHHHHHHH
Confidence 4444445556655444444
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.10 E-value=15 Score=33.41 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=39.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHH
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 169 (450)
........|+|+|||.++...||+..+.+.+. +.+.|.... ..|-||+.|-+...
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg----~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKG----HFGKCFLHFGNRKG 379 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCC-CceeEeeec----CCcceeEecCCccC
Confidence 33445567999999999999999999988764 334443322 34569999987543
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.01 E-value=25 Score=31.79 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCCHHHHHHHhhcc-C--CceEEEEEecCCCCCcceeEEEEeccHH----HHHHHHHHhcCCCCC--CCCCcceeccccc
Q 013061 126 WMDETFLHNCFSHT-G--QVVNVKVIRNKQTGQSEGYGFVEFYSRA----AAEKVLQSYSGSLMP--NTDQPFRLNWATF 196 (450)
Q Consensus 126 ~~t~~~l~~~f~~~-G--~v~~v~i~~~~~~g~~~g~afV~f~~~~----~A~~A~~~l~g~~~~--~~~~~i~~~~~~~ 196 (450)
+++.=+|.+-+... . ...+|+|.... .-||.|.-+- -..+.+..|+|..+. +....++|..+..
T Consensus 48 sisnwdlmerlk~aid~~q~dsckiresn-------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~ea 120 (445)
T KOG2891|consen 48 SISNWDLMERLKGAIDNHQFDSCKIRESN-------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEA 120 (445)
T ss_pred ccchHHHHHHHHhhcccccccceeecccc-------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhh
Confidence 44444444444321 1 34566665542 5788886543 345666778887653 2223333332221
Q ss_pred cC-------------C----CCcccCCCCceEEECCCCCC------------CCHHHHHHHHhhcCCCeeEEEEe
Q 013061 197 SG-------------S----DRRTEACSDLSIFVGDLAPD------------VTDSILQETFSSKYPSVKGAKVI 242 (450)
Q Consensus 197 ~~-------------~----~~~~~~~~~~~l~v~nl~~~------------~t~~~l~~~f~~~~g~i~~v~~~ 242 (450)
.- . ..........+|++.+||-. -+++-|+..| +.||+|..|.|.
T Consensus 121 kidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdip 194 (445)
T KOG2891|consen 121 KIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIP 194 (445)
T ss_pred cCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCc
Confidence 10 0 00111223457888888843 3567799999 699999988775
No 234
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.13 E-value=2.2 Score=43.27 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=8.8
Q ss_pred EEeCCHHHHHHHHHHhCC
Q 013061 256 VRFGDENERSRAMTEMNG 273 (450)
Q Consensus 256 V~f~~~~~a~~A~~~l~~ 273 (450)
..|...|...-++..|-.
T Consensus 328 l~fs~vEcLL~afh~La~ 345 (556)
T PF05918_consen 328 LQFSYVECLLYAFHQLAR 345 (556)
T ss_dssp --HHHHHHHHHHHHHHHT
T ss_pred ccchHhhHHHHHHHHHhh
Confidence 445566665555554443
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.05 E-value=4.4 Score=36.49 Aligned_cols=77 Identities=31% Similarity=0.604 Sum_probs=50.6
Q ss_pred CCCcEEEEecCCCC------------CCHHHHHHhccccCceEEEEeeC---------C-------CcE---------EE
Q 013061 325 SNNATIFVGALDSD------------VSDEDLREPFSQFGEILSVKIPV---------G-------KGC---------GF 367 (450)
Q Consensus 325 ~~~~~l~V~nlp~~------------~t~~~L~~~F~~~G~v~~v~i~~---------~-------~g~---------af 367 (450)
..+.+|++.+||-. .+++.|+..|+.||.|..|.|+. + .++ ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34457777777633 35788999999999999988863 1 122 34
Q ss_pred EEeecCHHHHHHHHHHhcCCee----CC----eEEEEEeccCC
Q 013061 368 VQFANSRKDAEVALQKLQGTAI----GK----QTVRLSWGRNP 402 (450)
Q Consensus 368 V~F~~~~~~A~~A~~~l~g~~~----~g----~~l~v~~~~~~ 402 (450)
|.|-. ..--..|+.+|.|..+ ++ ..++|.|.+.+
T Consensus 227 vqfme-ykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 227 VQFME-YKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHH-HHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 66655 4555567777777753 22 46778877653
No 236
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=62.36 E-value=31 Score=23.30 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=42.4
Q ss_pred EEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCH---HHHHHHHHH
Q 013061 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSR---KDAEVALQK 383 (450)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~---~~A~~A~~~ 383 (450)
++.|.+|.-.--...|.+.+...-.|.++.+....+.+-|+|..+. ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 4677777777777889999998889999999988899999998633 444445544
No 237
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=60.97 E-value=20 Score=27.97 Aligned_cols=48 Identities=13% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEeec----CCCCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~~----~~~~~~~g~afV~f~~~~~a~~ 266 (450)
..++.+||+|-+++-|-.-.++.++.+ ...|++.|+|.| |++.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 457889999998877766544444432 246788889977 777766543
No 238
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.83 E-value=17 Score=34.84 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=43.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCC-ceEEEEEecCCCCCcceeEEEEeccHHHHHHHHH
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 175 (450)
..|-|.++|.....+||...|+.|+. --+|+.+-|. .||-.|.+...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 46899999999999999999999974 2345555554 59999999999999995
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.22 E-value=1.8 Score=42.94 Aligned_cols=69 Identities=7% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
..++||++|+++.++-.+|..+++.+..+..+.+..+....+...+.+|.|+-.-....|+..||+.-+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 457899999999999999999999987777776665544445667899999877776777777777554
No 240
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=59.94 E-value=9.7 Score=41.44 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=2.6
Q ss_pred cchhhhh
Q 013061 9 ANAAAAA 15 (450)
Q Consensus 9 ~~~~~~~ 15 (450)
.++|.++
T Consensus 1401 ~~pa~sS 1407 (1517)
T KOG1883|consen 1401 STPAVSS 1407 (1517)
T ss_pred CCccccc
Confidence 3333333
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.09 E-value=14 Score=29.19 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=28.8
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHH
Q 013061 117 TIWIGDLFHW---------MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (450)
Q Consensus 117 ~l~V~nLp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 169 (450)
++.|-|++.. ++.++|++.|+.|.++ .++.+.++. -..|+++|+|...-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChH
Confidence 5666777543 3567899999999876 566666653 567899999987654
No 242
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=58.32 E-value=3.3 Score=42.12 Aligned_cols=11 Identities=0% Similarity=-0.221 Sum_probs=3.6
Q ss_pred CCCHHHHHHHh
Q 013061 126 WMDETFLHNCF 136 (450)
Q Consensus 126 ~~t~~~l~~~f 136 (450)
++|.+|+.-+|
T Consensus 189 DVTaeEF~l~m 199 (556)
T PF05918_consen 189 DVTAEEFELFM 199 (556)
T ss_dssp T--HHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 34444443333
No 243
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=57.55 E-value=35 Score=26.09 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~ 266 (450)
.+.+..+|++.+++.++.=.+..++..-. .+.++|||.| |++.+.+.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 46788899988887777544554444322 3567777766 777766544
No 244
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=50.78 E-value=5.1 Score=37.18 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCC
Q 013061 129 ETFLHNCFSHTGQ 141 (450)
Q Consensus 129 ~~~l~~~f~~~G~ 141 (450)
..||+++++..|.
T Consensus 152 S~dlkdilseagt 164 (423)
T PF02166_consen 152 SADLKDILSEAGT 164 (423)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4466666666553
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.85 E-value=38 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.1
Q ss_pred HHHHHHhhccCCceEEEEE
Q 013061 130 TFLHNCFSHTGQVVNVKVI 148 (450)
Q Consensus 130 ~~l~~~f~~~G~v~~v~i~ 148 (450)
.+||++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998655553
No 246
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=48.17 E-value=1.2e+02 Score=29.30 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhcc----CCceEEEEEec
Q 013061 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHT----GQVVNVKVIRN 150 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~----G~v~~v~i~~~ 150 (450)
...++.+|-|=||.| .+...+|...|+.| |.+..|.|.+.
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 356788999999999 67888999888766 46777877665
No 247
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.07 E-value=5.3 Score=39.78 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
....++|+|.|+++.++..+|..+|+.+-.+..+.+... ....+|+|+. .-.-.-|+.+||+..+..+.+.-
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~-~~ni~~a~~aLn~irl~s~~~se 305 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKR-GTNIKEACWALNGIRLRSNFLSE 305 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhcc-ccchHHHHHHhhhcccccccccc
Confidence 456789999999999999999999999988877777653 4678899986 56666677778887766554433
No 248
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.09 E-value=46 Score=32.01 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=44.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCce-EEEEeeCCCcEEEEEeecCHHHHHHHHHH
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEI-LSVKIPVGKGCGFVQFANSRKDAEVALQK 383 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v-~~v~i~~~~g~afV~F~~~~~~A~~A~~~ 383 (450)
.-..+|-|.++|.....+||...|+.|+.- -+|..+ +...||--|.. ...|..|+-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss-~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSS-VNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecc-hHHHHHHhhc
Confidence 356789999999999999999999999653 333333 46789999998 8888888763
No 249
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.06 E-value=6.6 Score=39.80 Aligned_cols=6 Identities=50% Similarity=1.066 Sum_probs=2.6
Q ss_pred CCCCCC
Q 013061 21 GGAGGG 26 (450)
Q Consensus 21 ~~~~~~ 26 (450)
.|.|++
T Consensus 53 ~~~~~~ 58 (1179)
T KOG3648|consen 53 AGGGGP 58 (1179)
T ss_pred cCCCCc
Confidence 344444
No 250
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=46.48 E-value=57 Score=26.37 Aligned_cols=48 Identities=17% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHhhcCC-CeeEEEEeecC----CCCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYP-SVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g-~i~~v~~~~~~----~~~~~~g~afV~f~~~~~a~~ 266 (450)
...+..||++.++..|. .=.+..++..- ..+.+.|||.| |++.+.+..
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 36788999999987777 33333333221 24567777766 777766543
No 251
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=45.39 E-value=1.2e+02 Score=31.03 Aligned_cols=85 Identities=9% Similarity=0.204 Sum_probs=55.9
Q ss_pred eEEEEeccHHHHHHHHHHhcCCCCCCC---------CCcce---eccccccCCC--CcccCCCCceEEECCCCCCCCHHH
Q 013061 159 YGFVEFYSRAAAEKVLQSYSGSLMPNT---------DQPFR---LNWATFSGSD--RRTEACSDLSIFVGDLAPDVTDSI 224 (450)
Q Consensus 159 ~afV~f~~~~~A~~A~~~l~g~~~~~~---------~~~i~---~~~~~~~~~~--~~~~~~~~~~l~v~nl~~~~t~~~ 224 (450)
-||+++.++..-+-..+.|+-..+... +-.|. ++++...... -+.+...+..+|+.+|+.++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 599999999988877777776655221 11111 1122111111 124455678899999999999988
Q ss_pred HHHHHhhcCCCeeEEEEeec
Q 013061 225 LQETFSSKYPSVKGAKVIID 244 (450)
Q Consensus 225 l~~~f~~~~g~i~~v~~~~~ 244 (450)
-.+++ +...-++.+.+++.
T Consensus 318 Q~~~i-rsipGlEna~i~rp 336 (621)
T COG0445 318 QEQII-RSIPGLENAEILRP 336 (621)
T ss_pred HHHHH-HhCcccccceeecc
Confidence 88888 47777888888754
No 252
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=45.04 E-value=30 Score=34.81 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=9.2
Q ss_pred EEEEeccHHHHHHHH
Q 013061 160 GFVEFYSRAAAEKVL 174 (450)
Q Consensus 160 afV~f~~~~~A~~A~ 174 (450)
...++.+..++..+-
T Consensus 389 ~~~~~~sp~~~qq~q 403 (742)
T KOG4274|consen 389 SLPMLSSPSPGQQVQ 403 (742)
T ss_pred cccccCCCchHhhhh
Confidence 445666666666555
No 253
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.12 E-value=27 Score=27.59 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=27.1
Q ss_pred EEEEecCCCC---------CCHHHHHHhccccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHH
Q 013061 329 TIFVGALDSD---------VSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQ 382 (450)
Q Consensus 329 ~l~V~nlp~~---------~t~~~L~~~F~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~ 382 (450)
++.|-|++.. ++.++|++.|+.|..++-..+... .++++|+|..+-.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 5566777543 356789999998977653333222 58999999874444444554
No 254
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.03 E-value=61 Score=22.81 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCC
Q 013061 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 223 ~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 289 (450)
++|.+.|.+..-.|..+.-+....+..+...-||+.+...+...+ ++-..+++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 467777754445577787777776677777888888777653333 4445567778887765443
No 255
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=39.89 E-value=2.5e+02 Score=26.80 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=59.9
Q ss_pred cCCCCCCCHHHHHHHh----hccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccc
Q 013061 121 GDLFHWMDETFLHNCF----SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (450)
Q Consensus 121 ~nLp~~~t~~~l~~~f----~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~ 196 (450)
.|.+++-+-+-++..| ++||.-.++++.+...--+..|.+.+...... .+....+...++..++
T Consensus 118 T~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~yP~GgGeV~~~v~p~~-------~l~~i~l~~~g~i~~i----- 185 (326)
T cd00874 118 TDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYPRGGGEVVLTVEPSK-------LLPPLLLEERGEIEKI----- 185 (326)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCCCCCEEEEEEEeccc-------CCCcceeecCCCeEEE-----
Confidence 3456677777777644 77897777888765432222333333333221 1111111111111111
Q ss_pred cCCCCcccCCCCceEEECCCCCCCCHHHHH---HHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC
Q 013061 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (450)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~---~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~ 260 (450)
.-..+..++|..+.+..+. +.+ +.. ...++.+..+...+.+.|++.+.+..
T Consensus 186 -----------rg~~~~~~l~~~va~r~~~~a~~~L-~~~-~~~dv~i~~~~~~~~s~G~~i~L~ae 239 (326)
T cd00874 186 -----------RGISHAANLPPHVAERQAEAAAALL-RKA-LGLQIEIEPEDQSALGPGSGIVLWAE 239 (326)
T ss_pred -----------EEEEEEccCCHHHHHHHHHHHHHHH-hhc-cCCCeEEEEEecCCCCCCEEEEEEEE
Confidence 1256788999888776654 445 241 22345555554457778888776653
No 256
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=39.45 E-value=38 Score=28.77 Aligned_cols=57 Identities=21% Similarity=0.118 Sum_probs=38.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCC-CCcceeEEEEeccHHHHHHHHHH
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQS 176 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~ 176 (450)
+++|.. +.+..-++|.++-+ |.+..|.+.+..+. -..+|-.||.|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456665 33333444555544 68888877665431 25678999999999999998865
No 257
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.26 E-value=1.3e+02 Score=22.19 Aligned_cols=58 Identities=9% Similarity=0.198 Sum_probs=39.6
Q ss_pred EEECCCCCCCCHHHHHHHHhhcCCC-eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 013061 211 IFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (450)
Q Consensus 211 l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 271 (450)
-|.--.+.+.+..+|++.+++.|+. |.+|..+.-+ ...--|||++...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 3444567789999999999655654 5666655443 12236999999999888775543
No 258
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=37.24 E-value=1.2e+02 Score=23.49 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~ 266 (450)
.+.+..+|++.+.+.++.=.+..++..-. .++++||+-| |.|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 45688899998887777655555554432 4567777766 777766543
No 259
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.80 E-value=83 Score=22.80 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=38.2
Q ss_pred EEEecCCCCCCHHHHHHhccc-cC-ceEEEEee---CCCcEEEEEeecCHHHHHHHHHHh
Q 013061 330 IFVGALDSDVSDEDLREPFSQ-FG-EILSVKIP---VGKGCGFVQFANSRKDAEVALQKL 384 (450)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~-~G-~v~~v~i~---~~~g~afV~F~~~~~~A~~A~~~l 384 (450)
-|+..++...+..+|+..++. |+ .|.+|..+ .+...|||++.. -+.|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~-g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAE-EYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECC-CCcHHHHHHhh
Confidence 456668889999999988876 44 45665543 345799999987 67776655443
No 260
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=35.74 E-value=17 Score=34.91 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=50.6
Q ss_pred CCceEEEcCCCCCCCHH--------HHHHHhhc--cCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHH
Q 013061 114 ETKTIWIGDLFHWMDET--------FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 175 (450)
..|.+|+.+.....+.+ ++..+|.. .+.+..+...+|.....++|..|++|+..+.+.+++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567887777655544 89999988 6788889998888677888999999999999998874
No 261
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=35.20 E-value=65 Score=29.76 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=7.5
Q ss_pred CCCCCCCHHHHHHHH
Q 013061 215 DLAPDVTDSILQETF 229 (450)
Q Consensus 215 nl~~~~t~~~l~~~f 229 (450)
+|...+|.....+++
T Consensus 119 GLEg~ltD~~a~~iI 133 (271)
T COG1512 119 GLEGVLTDAQAGRII 133 (271)
T ss_pred CcccccChHHHHHHH
Confidence 455555555444444
No 262
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=33.89 E-value=88 Score=23.11 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=38.0
Q ss_pred EEEecCCCCCCHHHHHHhccc-cC-ceEEEEeeC---CCcEEEEEeecCHHHHHHHHHHh
Q 013061 330 IFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANSRKDAEVALQKL 384 (450)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~-~G-~v~~v~i~~---~~g~afV~F~~~~~~A~~A~~~l 384 (450)
-|+..++...+..+|++.++. || .|.+|.... +...|||++.. -.+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~-g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAE-EYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCC-CCcHHHHHHhh
Confidence 445557888999999988876 44 566665443 45799999988 77777655443
No 263
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.82 E-value=6.7 Score=37.88 Aligned_cols=72 Identities=6% Similarity=-0.140 Sum_probs=56.7
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
...++..+|...+++++.-+|..||.|..+.+.+- .-.+||+-.. ++|..++.-+--..+.+..+++++++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~--~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK--ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec--cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 45577889999999999999999999998887652 4578888865 666777776666667788888888773
No 264
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=33.55 E-value=12 Score=41.35 Aligned_cols=8 Identities=13% Similarity=-0.168 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 013061 24 GGGSQPTP 31 (450)
Q Consensus 24 ~~~~q~q~ 31 (450)
++++|||+
T Consensus 322 ~~~~~Q~q 329 (1973)
T KOG4407|consen 322 YPQQQQQQ 329 (1973)
T ss_pred chhhhhhh
Confidence 33333333
No 265
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=33.44 E-value=46 Score=31.92 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=48.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-ceEEEEEecCCC--CCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
.....|.|+.||+..++++|.+-...+-. |....+...... ..-.+.|||.|...++.....+.++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45678999999999999999988877642 222222211110 11246799999999998888888888765
No 266
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.88 E-value=88 Score=29.67 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=33.7
Q ss_pred EEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHH
Q 013061 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (450)
Q Consensus 160 afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 229 (450)
|||.|++..+|..|++.+..... ..+++..+. +.+.|.=.||..+..+..++.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHH
Confidence 79999999999999986544432 333443332 22234445776666665665544
No 267
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.35 E-value=1.3e+02 Score=24.62 Aligned_cols=109 Identities=12% Similarity=-0.028 Sum_probs=59.6
Q ss_pred CCCHHHHHHHhhc-cCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccccCCCCc-c
Q 013061 126 WMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR-T 203 (450)
Q Consensus 126 ~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~~~-~ 203 (450)
+.+-..|...+.. ++....+.+..-. .++..+.|.+.+++.++++. ....+ .+..+.+..-.+...... .
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~--~~~~~~l~~W~~~~~~~~~~ 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNF--NGHFLILQRWSPDFNPSEVK 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccc--cccchhhhhhcccccccccc
Confidence 4566667766654 3433344444322 24799999999999999852 22223 223333322221111111 1
Q ss_pred cCCCCceEEECCCCCC-CCHHHHHHHHhhcCCCeeEEEEee
Q 013061 204 EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVII 243 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~~~~ 243 (450)
......=|.|.|||.. .+++-++.+. ...|.+.++....
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~~t 139 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDENT 139 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEcCC
Confidence 1111223566799987 5566667777 5999988876543
No 268
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=31.20 E-value=32 Score=33.85 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.6
Q ss_pred EEEecCCCCCCH
Q 013061 330 IFVGALDSDVSD 341 (450)
Q Consensus 330 l~V~nlp~~~t~ 341 (450)
+.|..|..++.+
T Consensus 493 vKIHqlNK~Wrd 504 (775)
T KOG1151|consen 493 VKIHQLNKNWRD 504 (775)
T ss_pred Eeeehhccchhh
Confidence 344455555443
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.11 E-value=1.6e+02 Score=19.60 Aligned_cols=54 Identities=13% Similarity=-0.010 Sum_probs=40.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccH----HHHHHHHHH
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR----AAAEKVLQS 176 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~----~~A~~A~~~ 176 (450)
++.|.||.-..-...|++.+...-.|.++.+-... +.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57888888888888999999999889888886654 3588888755 455555544
No 270
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=30.43 E-value=39 Score=26.29 Aligned_cols=17 Identities=47% Similarity=1.072 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 013061 417 GAHYGGQGYSGNGYAFP 433 (450)
Q Consensus 417 g~~~g~~g~g~~g~~~~ 433 (450)
|-.+|++|||++.||..
T Consensus 78 gtsYg~ggyGsnaYG~~ 94 (132)
T PF04626_consen 78 GTSYGGGGYGSNAYGVQ 94 (132)
T ss_pred ceeecCCcccccccCCC
Confidence 34556667777666654
No 271
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.30 E-value=52 Score=31.26 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=29.0
Q ss_pred EEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCCC
Q 013061 366 GFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQW 407 (450)
Q Consensus 366 afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 407 (450)
|||+|++ ..+|..|++.+.... .+.++++.|.++.+=-+
T Consensus 1 aFVtF~~-~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNS-QKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECC-HHHHHHHHHHHhcCC--CCCceEeeCCCcccccc
Confidence 7999999 999999998655543 35568888877765443
No 272
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=29.78 E-value=2.1e+02 Score=21.12 Aligned_cols=48 Identities=10% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEe----ecCCCCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~----~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
...+..||++.++..++.=.+..++ .....+.+.|+|.| |++.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 4567888988887666552232222 22234556777766 777776654
No 273
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.77 E-value=33 Score=34.98 Aligned_cols=7 Identities=14% Similarity=0.619 Sum_probs=3.0
Q ss_pred eEEEcCC
Q 013061 117 TIWIGDL 123 (450)
Q Consensus 117 ~l~V~nL 123 (450)
.|++-..
T Consensus 235 vi~~pqm 241 (728)
T KOG4592|consen 235 VIYLPQM 241 (728)
T ss_pred ccccccC
Confidence 4444433
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=29.56 E-value=1.3e+02 Score=28.44 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=42.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcc-eeEEEEeccHHHHHHHHHHhcCC
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGS 180 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~-g~afV~f~~~~~A~~A~~~l~g~ 180 (450)
...+|-|-. ..+++.|..|..+.+ +..++++.-...|+.- ..-|=.|.+.++|+.|+..|-..
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 334555554 456888998888875 4667777655445432 22333599999999999887553
No 275
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=29.13 E-value=5.1e+02 Score=24.71 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=61.1
Q ss_pred eEEEc---CCCCCCCHHHHHH----HhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 117 TIWIG---DLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 117 ~l~V~---nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
+|.|+ |.+++-+-+.++. ++++||.-.++++.+-..--+.-|.+.++..... .+....+...+...
T Consensus 113 ~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~yP~GGGeV~~~i~p~~-------~l~~i~l~~~G~i~ 185 (326)
T TIGR03399 113 RVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYPRGGGEVRLRVEPVK-------KLKPLELEERGELL 185 (326)
T ss_pred EEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCCCCCEEEEEEEcccc-------CCCceeeecCCceE
Confidence 45554 4556667777765 4477898778888775432223344444333221 11221221122222
Q ss_pred eeccccccCCCCcccCCCCceEEECCCCCCCCHHHH---HHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeC
Q 013061 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL---QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (450)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l---~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~ 259 (450)
++ .-..+..++|..+.+..+ ++.+ +.++....+.+... +.+.+.|++.+.+.
T Consensus 186 ~i----------------~g~~~~~~l~~~va~r~~~~a~~~L-~~~~~~~~i~~~~~-~~~~s~G~~i~L~a 240 (326)
T TIGR03399 186 RV----------------SGIAHAANLPAHVAERMAKAAREEL-RKLGLDPEIEIEVL-DKGLGPGSGIVLWA 240 (326)
T ss_pred EE----------------EEEEEEccCCHHHHHHHHHHHHHHH-HhhCCCceEEEEec-cCCCCCcEEEEEEE
Confidence 21 125677899988776544 4555 34544333333321 44667778776654
No 276
>PRK10905 cell division protein DamX; Validated
Probab=28.66 E-value=1.1e+02 Score=28.78 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=39.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCC-cceeEEEEeccHHHHHHHHHHhcC
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-SEGYGFVEFYSRAAAEKVLQSYSG 179 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~A~~~l~g 179 (450)
.+|-|.-+ .+++.|+.|..+.| +....+.....+|+ ....-+=.|.+.++|++|+..|-.
T Consensus 248 YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 34555443 46688888888875 45555655555555 333344469999999999988654
No 277
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=28.58 E-value=1e+02 Score=21.74 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 223 ~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
++|.+.|.+..-++..+..+....++.+-..-+|+.....+-.. -++-+.+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 35777775455567888888777777777788888776644333 2455567888888876543
No 278
>PF14893 PNMA: PNMA
Probab=28.26 E-value=59 Score=30.99 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=48.9
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecC-CCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
..+.|.|.+||.++++++|.+.+....-++-..+++... ......-.++|+|...-+-...=...-| .|..++|-+
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv~ 93 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG---KGGPWRVVF 93 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC---CCCceEEEe
Confidence 456799999999999999999885323333343333210 0011133688988776443222121211 466778777
Q ss_pred cCCCCCCcc
Q 013061 286 ATPKKASGY 294 (450)
Q Consensus 286 ~~~~~~~~~ 294 (450)
-.+......
T Consensus 94 ~p~~~D~e~ 102 (331)
T PF14893_consen 94 KPPAPDAEF 102 (331)
T ss_pred cCCCCCHHH
Confidence 666554433
No 279
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=28.05 E-value=27 Score=35.20 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=4.8
Q ss_pred cEEEEEeec
Q 013061 364 GCGFVQFAN 372 (450)
Q Consensus 364 g~afV~F~~ 372 (450)
+..|+...|
T Consensus 680 ~s~~lse~N 688 (757)
T KOG4368|consen 680 NSAPLGEEN 688 (757)
T ss_pred CCCcccccc
Confidence 445555555
No 280
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=27.98 E-value=20 Score=35.08 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHhhccCC
Q 013061 125 HWMDETFLHNCFSHTGQ 141 (450)
Q Consensus 125 ~~~t~~~l~~~f~~~G~ 141 (450)
.-++..+|.+++..||.
T Consensus 252 ~ltSsktlhdlyldcgS 268 (572)
T KOG4679|consen 252 SLTSSKTLHDLYLDCGS 268 (572)
T ss_pred ccccchhHHHHHHhhcc
Confidence 34566778888888774
No 281
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=26.23 E-value=2.4e+02 Score=19.84 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=37.6
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeec
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~ 372 (450)
.+++|.++.-.--...+.+.++....|..+.+...++.+.|+|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 467777777666678888999888889999998888899999987
No 282
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.01 E-value=60 Score=28.90 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceE
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN 144 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~ 144 (450)
....++||+-|+|..+|++.|.++.+.+|-+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 456789999999999999999999999985433
No 283
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=25.05 E-value=5.1e+02 Score=25.94 Aligned_cols=11 Identities=9% Similarity=-0.284 Sum_probs=5.5
Q ss_pred EEEeccHHHHH
Q 013061 161 FVEFYSRAAAE 171 (450)
Q Consensus 161 fV~f~~~~~A~ 171 (450)
-|.+.+++...
T Consensus 127 ~IiV~TP~rL~ 137 (456)
T PRK10590 127 DVLVATPGRLL 137 (456)
T ss_pred cEEEEChHHHH
Confidence 34555555443
No 284
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.43 E-value=3.6e+02 Score=21.72 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=47.8
Q ss_pred cEEEEecCCCC---CCHHHHHHhccccCc-eEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 328 ATIFVGALDSD---VSDEDLREPFSQFGE-ILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 328 ~~l~V~nlp~~---~t~~~L~~~F~~~G~-v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
..|.|+..... .+...|.+.++.-|. ++++.. +.+...|+|.+ .++-.+|.+.|....=++..|-+..+.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~~~~~irf~~-~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--ENDSLLIRFDS-PEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eCCEEEEEECC-HHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45666655333 566778888877653 334433 35699999999 999999999888665556666666655
No 285
>PRK11901 hypothetical protein; Reviewed
Probab=24.43 E-value=1.6e+02 Score=27.83 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=40.4
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEE--EeCCHHHHHHHHHHhCCc
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV--RFGDENERSRAMTEMNGV 274 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV--~f~~~~~a~~A~~~l~~~ 274 (450)
...+|-|..+ -.++.|..+. +..+ +..++++.....|+.. |..| .|.+.++|..|+..|-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~-~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYA-KKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHH-HHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 3445555543 4577788887 4664 5666776654445443 5444 599999999999887643
No 286
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.16 E-value=2.2e+02 Score=20.31 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHhccccCceEEEEeeCC--CcEEEEEeecCHHHHHHHHHHhc
Q 013061 341 DEDLREPFSQFGEILSVKIPVG--KGCGFVQFANSRKDAEVALQKLQ 385 (450)
Q Consensus 341 ~~~L~~~F~~~G~v~~v~i~~~--~g~afV~F~~~~~~A~~A~~~l~ 385 (450)
.++|++.+..+| +.-..+.-. -+++|+-+.+ .+.+.++++.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~-~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKD-EDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECC-HHHHHHHHHHHH
Confidence 356777778888 556666665 5677877777 888888877663
No 287
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.21 E-value=69 Score=32.51 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=4.3
Q ss_pred CHHHHHHHH
Q 013061 221 TDSILQETF 229 (450)
Q Consensus 221 t~~~l~~~f 229 (450)
..+.|+..+
T Consensus 552 ~sErl~~av 560 (757)
T KOG4368|consen 552 PSERLLAAV 560 (757)
T ss_pred hHHHHHHHH
Confidence 344455554
No 288
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.11 E-value=2.8e+02 Score=22.85 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=35.9
Q ss_pred EEECCCCCCCCHHHHHHHHhhcCCC-eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 211 IFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 211 l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
.|+--++...+..+|++.+++.|+. |..|..+.-+. + .--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 4444567788999999999655653 45555544332 2 2259999988877655443
No 289
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=22.52 E-value=2.1e+02 Score=25.22 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=39.1
Q ss_pred CCCHHHHH---HHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 126 WMDETFLH---NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 126 ~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
++++++|+ .....||. ...+++|+.++-..-..|+.=.|.+....|++.+....+
T Consensus 38 ~i~~~~lk~F~k~AkKyGV--~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~ 95 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYGV--DYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKL 95 (204)
T ss_pred ecCHhhHHHHHHHHHHcCC--ceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 34445554 55678883 455777776665566788888899999999998877665
No 290
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=21.51 E-value=2.5e+02 Score=24.31 Aligned_cols=6 Identities=50% Similarity=0.872 Sum_probs=2.5
Q ss_pred EEECCC
Q 013061 211 IFVGDL 216 (450)
Q Consensus 211 l~v~nl 216 (450)
.++++|
T Consensus 8 tLiGrL 13 (186)
T PRK07772 8 TVVGNL 13 (186)
T ss_pred EEEEEe
Confidence 334444
No 291
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=20.79 E-value=51 Score=32.56 Aligned_cols=10 Identities=10% Similarity=-0.090 Sum_probs=4.2
Q ss_pred EECCCCCCCC
Q 013061 212 FVGDLAPDVT 221 (450)
Q Consensus 212 ~v~nl~~~~t 221 (450)
++-++|..++
T Consensus 392 rrpeep~~lt 401 (775)
T KOG1151|consen 392 RRPEEPETLT 401 (775)
T ss_pred cCCCCccccc
Confidence 3344444443
No 292
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.73 E-value=1.3e+02 Score=28.96 Aligned_cols=68 Identities=13% Similarity=0.303 Sum_probs=46.0
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEee-cCC--CCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII-DSN--TGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~-~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 276 (450)
-..+.|..||+.++++++.+-+ ..|.+-.....+. ... ...-.+.+||.|...++...-..-++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi-~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQI-NPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhc-CCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3468889999999999999988 4655432222222 111 011245689999999998777777787765
No 293
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.62 E-value=29 Score=33.31 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=7.6
Q ss_pred hccCCCCCCCCCCCC
Q 013061 18 AVSGGAGGGSQPTPQ 32 (450)
Q Consensus 18 ~~~~~~~~~~q~q~q 32 (450)
..+|+..+-+++.-+
T Consensus 213 ~~~g~~~~V~~~r~~ 227 (505)
T COG5624 213 IMAGGVYGVHDGRSK 227 (505)
T ss_pred cccccceecccchHH
Confidence 345555555554433
No 294
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.58 E-value=1.3e+02 Score=21.26 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.3
Q ss_pred cEEEEEeecCHHHHHHHHHHhcCCeeC
Q 013061 364 GCGFVQFANSRKDAEVALQKLQGTAIG 390 (450)
Q Consensus 364 g~afV~F~~~~~~A~~A~~~l~g~~~~ 390 (450)
...+|.|.+ ..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~s-t~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPS-THDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECC-HHHHHHHHHHHHHCCCc
Confidence 367899999 99999999988766553
No 295
>PF06403 Lamprin: Lamprin; InterPro: IPR009437 This family consists of several lamprin proteins from the Sea lamprey Petromyzon marinus. Lamprin, an insoluble non-collagen, non-elastin protein, is the major connective tissue component of the fibrillar extracellular matrix of lamprey annular cartilage. Although not generally homologous to any other protein, soluble lamprins contain a tandemly repeated peptide sequence (GGLGY), which is present in both silkmoth chorion proteins and spider dragline silk. Strong homologies to this repeat sequence are also present in several mammalian and avian elastins. It is thought that these proteins share a structural motif which promotes self-aggregation and fibril formation in proteins through interdigitation of hydrophobic side chains in beta-sheet/beta-turn structures, a motif that has been preserved in recognisable form over several hundred million years of evolution [].; GO: 0005198 structural molecule activity, 0005578 proteinaceous extracellular matrix
Probab=20.48 E-value=1.1e+02 Score=23.13 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCC
Q 013061 416 NGAHYGGQGYSGNGYAFPPNQDPNMYAATAVPGA 449 (450)
Q Consensus 416 ~g~~~g~~g~g~~g~~~~~~~~~~~~~~~~~~~~ 449 (450)
+|-++|+-||||-||++=+...- .|+.-+|||+
T Consensus 41 ~glgygglgygglgy~glg~agl-gy~glgy~g~ 73 (138)
T PF06403_consen 41 GGLGYGGLGYGGLGYDGLGVAGL-GYGGLGYPGA 73 (138)
T ss_pred ccccccccccCcccccccccccc-ccCccCCCcc
No 296
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=20.31 E-value=3.4e+02 Score=19.53 Aligned_cols=62 Identities=10% Similarity=0.004 Sum_probs=43.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-------cCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCC
Q 013061 117 TIWIGDLFHWMDETFLHNCFSH-------TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~-------~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 181 (450)
-|-.++||..+|.++|...-.. +..|.-++...+.. ..+-||+.+=.|++...++.+. .|..
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHH-cCCC
Confidence 3667899998999998876643 34555666555543 3467999999999998888865 3543
No 297
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.11 E-value=3.3e+02 Score=19.74 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHH
Q 013061 117 TIWIGDLFHWMDETFLHNCFSH-TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 176 (450)
.-|+-.++..++..+|+..++. |+ .|.+|..+.-+. ...-|||.+...+.|...-.+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4566678899999999998876 44 566666655442 223599999998888876654
Done!