Query 013061
Match_columns 450
No_of_seqs 342 out of 3009
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.4E-44 4.8E-49 338.9 29.3 241 113-404 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-43 4.7E-48 333.5 26.8 246 111-402 37-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 8.7E-34 3E-38 253.5 18.5 172 111-290 11-182 (213)
4 4f02_A Polyadenylate-binding p 100.0 1.8E-32 6.1E-37 245.0 19.6 167 205-403 12-182 (213)
5 1l3k_A Heterogeneous nuclear r 100.0 2.5E-32 8.5E-37 241.2 20.0 177 111-292 9-186 (196)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-32 1.1E-36 234.3 20.1 165 114-286 2-168 (168)
7 3md3_A Nuclear and cytoplasmic 100.0 3.5E-32 1.2E-36 233.4 20.3 165 116-287 1-165 (166)
8 2qfj_A FBP-interacting repress 100.0 3.7E-32 1.3E-36 243.9 20.6 176 113-291 26-207 (216)
9 1fxl_A Paraneoplastic encephal 100.0 7.1E-32 2.4E-36 231.8 20.9 164 115-286 2-167 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 2.8E-31 9.4E-36 230.0 22.2 168 114-287 2-175 (175)
11 1l3k_A Heterogeneous nuclear r 100.0 4E-31 1.4E-35 233.4 20.8 173 204-406 9-187 (196)
12 2cjk_A Nuclear polyadenylated 100.0 3.2E-32 1.1E-36 234.0 12.8 165 114-289 2-166 (167)
13 3md3_A Nuclear and cytoplasmic 100.0 9.3E-31 3.2E-35 224.5 20.9 160 209-401 1-166 (166)
14 1b7f_A Protein (SXL-lethal pro 100.0 8.3E-31 2.8E-35 225.4 20.2 159 207-399 2-168 (168)
15 1fxl_A Paraneoplastic encephal 100.0 1.8E-30 6.1E-35 223.0 20.7 159 207-399 1-167 (167)
16 2qfj_A FBP-interacting repress 100.0 1E-30 3.5E-35 234.4 19.8 176 207-405 27-208 (216)
17 3nmr_A Cugbp ELAV-like family 100.0 1.1E-29 3.9E-34 219.8 19.1 161 207-400 2-175 (175)
18 3pgw_A U1-A; protein-RNA compl 100.0 3.3E-29 1.1E-33 234.0 23.7 192 205-401 6-282 (282)
19 2adc_A Polypyrimidine tract-bi 100.0 1.8E-29 6.3E-34 228.0 21.0 192 204-402 30-228 (229)
20 2yh0_A Splicing factor U2AF 65 100.0 1E-30 3.5E-35 231.1 11.8 169 113-291 2-196 (198)
21 2g4b_A Splicing factor U2AF 65 100.0 1.8E-29 6E-34 218.0 17.7 160 113-287 2-172 (172)
22 3smz_A Protein raver-1, ribonu 100.0 6.8E-29 2.3E-33 232.2 21.7 173 114-292 94-267 (284)
23 3tyt_A Heterogeneous nuclear r 100.0 2.3E-29 7.8E-34 222.4 17.2 164 113-286 2-204 (205)
24 1fje_B Nucleolin RBD12, protei 100.0 3.1E-30 1.1E-34 223.4 11.4 166 111-289 9-174 (175)
25 2cjk_A Nuclear polyadenylated 100.0 4.8E-30 1.6E-34 220.4 12.1 159 207-402 2-166 (167)
26 1qm9_A Polypyrimidine tract-bi 100.0 3.1E-29 1.1E-33 221.6 16.8 189 207-402 2-197 (198)
27 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-28 4.3E-33 230.2 21.2 166 111-287 5-281 (282)
28 1fje_B Nucleolin RBD12, protei 100.0 1.6E-29 5.4E-34 218.9 13.7 164 204-402 9-174 (175)
29 2yh0_A Splicing factor U2AF 65 100.0 2.1E-29 7.3E-34 222.7 14.3 177 207-404 3-196 (198)
30 3tyt_A Heterogeneous nuclear r 100.0 1.2E-28 4E-33 217.8 18.1 186 207-399 3-204 (205)
31 2adc_A Polypyrimidine tract-bi 100.0 2.8E-28 9.4E-33 220.3 19.9 165 112-289 31-228 (229)
32 2ghp_A U4/U6 snRNA-associated 100.0 8.1E-29 2.8E-33 232.6 16.8 171 114-289 116-291 (292)
33 2g4b_A Splicing factor U2AF 65 100.0 4E-28 1.4E-32 209.4 17.4 153 207-400 3-172 (172)
34 1qm9_A Polypyrimidine tract-bi 100.0 3.1E-28 1E-32 215.2 16.7 163 114-289 2-197 (198)
35 3sde_A Paraspeckle component 1 100.0 1E-27 3.4E-32 221.0 19.4 158 112-290 19-180 (261)
36 3sde_A Paraspeckle component 1 99.9 3.1E-26 1.1E-30 211.0 18.9 156 204-405 18-182 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 6.6E-22 2.3E-26 167.7 15.2 146 144-292 2-153 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-20 5.5E-25 159.1 17.1 147 238-406 2-154 (158)
39 2i2y_A Fusion protein consists 99.9 2.5E-21 8.7E-26 162.5 11.7 138 248-403 10-149 (150)
40 4f25_A Polyadenylate-binding p 99.8 2E-21 6.7E-26 155.1 9.5 107 114-224 4-113 (115)
41 4f25_A Polyadenylate-binding p 99.8 6.1E-20 2.1E-24 146.4 11.2 110 207-343 4-113 (115)
42 2i2y_A Fusion protein consists 99.8 1.4E-19 4.8E-24 151.8 13.0 128 154-290 10-149 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 8.2E-20 2.8E-24 141.2 9.9 82 113-196 17-98 (99)
44 1u6f_A Tcubp1, RNA-binding pro 99.8 2.1E-19 7.1E-24 148.8 12.5 87 111-199 38-124 (139)
45 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.5E-19 2.2E-23 148.8 11.5 82 324-406 36-123 (156)
46 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-18 4.7E-23 134.3 11.9 82 206-288 17-98 (99)
47 3s8s_A Histone-lysine N-methyl 99.8 1.2E-18 4.1E-23 137.3 10.1 81 113-195 4-84 (110)
48 3r27_A HnRNP L, heterogeneous 99.8 2.4E-18 8.2E-23 131.1 11.0 80 322-402 16-97 (100)
49 3pgw_S U1-70K; protein-RNA com 99.8 5.4E-19 1.8E-23 173.1 9.5 84 324-408 99-188 (437)
50 2dgu_A Heterogeneous nuclear r 99.8 6.7E-18 2.3E-22 131.8 13.4 81 324-407 8-88 (103)
51 2cq1_A PTB-like protein L; RRM 99.8 1.3E-17 4.5E-22 128.7 14.3 83 322-405 10-94 (101)
52 1x4d_A Matrin 3; structural ge 99.8 4.2E-18 1.4E-22 131.3 11.4 79 324-403 12-93 (102)
53 1sjq_A Polypyrimidine tract-bi 99.8 1.9E-18 6.6E-23 133.1 9.4 83 323-406 12-96 (105)
54 1x4a_A Splicing factor, argini 99.8 1.4E-17 4.9E-22 131.4 14.6 85 320-405 15-102 (109)
55 2dgo_A Cytotoxic granule-assoc 99.8 7.9E-18 2.7E-22 134.3 12.9 89 110-200 10-98 (115)
56 2lxi_A RNA-binding protein 10; 99.8 3.4E-19 1.2E-23 135.6 4.5 81 115-197 1-83 (91)
57 1x5u_A Splicing factor 3B subu 99.8 6.4E-18 2.2E-22 132.5 11.9 86 111-198 11-96 (105)
58 2cpz_A CUG triplet repeat RNA- 99.8 7.6E-18 2.6E-22 134.4 12.1 88 111-200 21-108 (115)
59 1wex_A Hypothetical protein (r 99.8 1.1E-17 3.8E-22 129.9 12.5 83 322-405 10-94 (104)
60 2dnh_A Bruno-like 5, RNA bindi 99.8 1.5E-17 5.3E-22 130.3 13.6 88 111-199 11-99 (105)
61 1x4c_A Splicing factor, argini 99.8 2.1E-17 7E-22 130.2 14.3 82 324-407 12-98 (108)
62 2wbr_A GW182, gawky, LD47780P; 99.7 4.7E-18 1.6E-22 124.5 9.5 74 326-400 6-79 (89)
63 2lea_A Serine/arginine-rich sp 99.7 1.5E-18 5.1E-23 142.3 7.5 125 159-292 6-130 (135)
64 2lkz_A RNA-binding protein 5; 99.7 1.6E-18 5.4E-23 132.3 7.1 84 112-195 6-93 (95)
65 2cq0_A Eukaryotic translation 99.7 6.5E-18 2.2E-22 132.0 10.7 86 111-198 11-96 (103)
66 1x5s_A Cold-inducible RNA-bind 99.7 9.4E-18 3.2E-22 130.8 11.6 87 111-199 8-94 (102)
67 3s8s_A Histone-lysine N-methyl 99.7 1.2E-17 4.1E-22 131.5 12.2 84 206-290 4-87 (110)
68 2dnz_A Probable RNA-binding pr 99.7 1.2E-17 4.2E-22 128.3 11.9 84 113-198 3-86 (95)
69 2dgs_A DAZ-associated protein 99.7 1.6E-17 5.4E-22 128.8 12.4 86 111-199 6-91 (99)
70 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.7E-18 2E-22 127.9 9.5 82 113-196 4-85 (87)
71 2cqc_A Arginine/serine-rich sp 99.7 6.3E-18 2.2E-22 130.0 9.9 84 110-195 10-93 (95)
72 2la6_A RNA-binding protein FUS 99.7 1.6E-17 5.6E-22 128.6 12.2 82 111-194 9-98 (99)
73 2do4_A Squamous cell carcinoma 99.7 1.5E-17 5.1E-22 129.2 11.9 84 111-197 13-96 (100)
74 1why_A Hypothetical protein ri 99.7 1.5E-17 5E-22 128.4 11.7 82 323-405 13-96 (97)
75 2d9p_A Polyadenylate-binding p 99.7 2.3E-17 7.8E-22 128.9 12.9 87 109-199 9-95 (103)
76 2jrs_A RNA-binding protein 39; 99.7 1.9E-17 6.5E-22 130.2 12.3 85 111-197 22-106 (108)
77 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-17 4.8E-22 131.7 11.5 84 321-405 25-110 (119)
78 3p5t_L Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 129.9 7.9 80 116-197 2-83 (90)
79 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-17 5.1E-22 137.5 12.3 83 322-405 37-125 (139)
80 2cph_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 130.8 11.8 87 111-199 11-99 (107)
81 2dgp_A Bruno-like 4, RNA bindi 99.7 1.4E-17 4.8E-22 130.8 11.4 88 111-198 9-97 (106)
82 2dnm_A SRP46 splicing factor; 99.7 1.1E-17 3.6E-22 130.8 10.6 86 111-198 9-94 (103)
83 2e5h_A Zinc finger CCHC-type a 99.7 7.2E-18 2.4E-22 129.4 9.4 83 111-195 12-94 (94)
84 2cq3_A RNA-binding protein 9; 99.7 5.6E-17 1.9E-21 126.6 14.5 85 321-406 9-97 (103)
85 2lxi_A RNA-binding protein 10; 99.7 2.6E-18 8.9E-23 130.6 6.5 84 208-292 1-86 (91)
86 3md1_A Nuclear and cytoplasmic 99.7 1.1E-17 3.8E-22 125.1 9.9 81 115-197 1-81 (83)
87 2khc_A Testis-specific RNP-typ 99.7 1.1E-17 3.8E-22 134.1 10.6 83 110-194 35-117 (118)
88 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.4E-18 2.5E-22 126.7 8.8 81 112-194 4-84 (85)
89 2div_A TRNA selenocysteine ass 99.7 1.3E-17 4.6E-22 129.2 10.4 87 111-197 5-94 (99)
90 2cpj_A Non-POU domain-containi 99.7 2.6E-17 9E-22 127.5 12.0 83 322-405 10-92 (99)
91 2kxn_B Transformer-2 protein h 99.7 1.7E-17 5.7E-22 134.8 11.3 85 111-197 42-126 (129)
92 1x4h_A RNA-binding protein 28; 99.7 2.2E-17 7.5E-22 130.9 11.7 87 111-199 11-103 (111)
93 2dnq_A RNA-binding protein 4B; 99.7 2.7E-17 9.2E-22 125.0 11.6 80 324-406 5-84 (90)
94 2hvz_A Splicing factor, argini 99.7 9.6E-18 3.3E-22 130.5 9.1 96 116-218 1-101 (101)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.6E-17 5.5E-22 141.4 11.2 130 162-292 11-155 (165)
96 2dgt_A RNA-binding protein 30; 99.7 4.6E-17 1.6E-21 124.2 12.7 80 323-405 6-85 (92)
97 2m2b_A RNA-binding protein 10; 99.7 1.2E-17 4E-22 136.5 9.8 84 111-197 19-108 (131)
98 1p27_B RNA-binding protein 8A; 99.7 2.8E-17 9.5E-22 129.1 11.6 84 112-197 20-103 (106)
99 1whw_A Hypothetical protein ri 99.7 4E-17 1.4E-21 126.5 12.3 82 324-406 5-92 (99)
100 2cqb_A Peptidyl-prolyl CIS-tra 99.7 8.6E-18 2.9E-22 131.1 8.4 87 111-199 8-94 (102)
101 2dnz_A Probable RNA-binding pr 99.7 4E-17 1.4E-21 125.5 12.0 80 325-405 3-88 (95)
102 1x4f_A Matrin 3; structural ge 99.7 2.7E-17 9.2E-22 128.5 11.0 81 324-405 22-105 (112)
103 2dng_A Eukaryotic translation 99.7 3E-17 1E-21 128.1 11.3 86 110-199 10-95 (103)
104 1sjq_A Polypyrimidine tract-bi 99.7 1.7E-17 5.8E-22 127.8 9.6 81 112-200 13-95 (105)
105 2cqi_A Nucleolysin TIAR; RNA r 99.7 8E-17 2.7E-21 125.7 13.6 83 322-405 10-96 (103)
106 2d9p_A Polyadenylate-binding p 99.7 4.6E-17 1.6E-21 127.1 12.2 84 322-406 10-97 (103)
107 2dhg_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 126.8 12.7 85 111-198 5-91 (104)
108 2cqd_A RNA-binding region cont 99.7 1E-16 3.5E-21 128.0 14.3 82 321-404 11-98 (116)
109 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.8E-22 128.2 8.9 83 114-198 1-83 (96)
110 3ns6_A Eukaryotic translation 99.7 6.4E-18 2.2E-22 131.0 6.9 82 113-196 4-92 (100)
111 2cqd_A RNA-binding region cont 99.7 2E-17 6.8E-22 132.2 10.0 86 110-198 12-97 (116)
112 2dgo_A Cytotoxic granule-assoc 99.7 1.4E-16 4.8E-21 127.0 14.9 84 322-406 10-99 (115)
113 2lkz_A RNA-binding protein 5; 99.7 9.2E-18 3.2E-22 128.1 7.6 81 207-288 8-94 (95)
114 1x4e_A RNA binding motif, sing 99.7 9.2E-18 3.1E-22 126.2 7.3 80 113-194 3-82 (85)
115 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.5E-17 1.5E-21 127.0 11.4 83 323-406 8-96 (102)
116 1wi8_A EIF-4B, eukaryotic tran 99.7 2.5E-17 8.4E-22 128.9 9.9 85 111-199 11-96 (104)
117 2cpf_A RNA binding motif prote 99.7 2.2E-17 7.5E-22 127.7 9.5 85 113-199 3-90 (98)
118 2cpz_A CUG triplet repeat RNA- 99.7 7.8E-17 2.7E-21 128.5 12.9 85 321-406 19-109 (115)
119 2fy1_A RNA-binding motif prote 99.7 5.6E-17 1.9E-21 129.3 12.0 84 112-198 4-87 (116)
120 1wex_A Hypothetical protein (r 99.7 6.5E-17 2.2E-21 125.6 12.0 84 111-200 11-94 (104)
121 2dh8_A DAZ-associated protein 99.7 2.2E-17 7.5E-22 129.5 9.4 86 111-199 12-97 (105)
122 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-16 4.2E-21 123.7 13.5 82 321-405 9-92 (99)
123 2cph_A RNA binding motif prote 99.7 7.2E-17 2.5E-21 127.0 12.3 84 322-406 10-101 (107)
124 3md1_A Nuclear and cytoplasmic 99.7 8.1E-17 2.8E-21 120.4 12.0 81 209-290 2-82 (83)
125 1x5t_A Splicing factor 3B subu 99.7 3.3E-17 1.1E-21 126.2 10.1 81 325-406 3-90 (96)
126 2cqp_A RNA-binding protein 12; 99.7 1.7E-17 5.8E-22 128.3 8.5 83 112-196 12-94 (98)
127 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-17 4.4E-22 133.1 8.1 106 111-235 4-109 (115)
128 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.5E-17 1.9E-21 122.5 11.1 83 206-289 4-86 (87)
129 2dgx_A KIAA0430 protein; RRM d 99.7 5.9E-17 2E-21 124.6 11.3 81 324-405 6-93 (96)
130 1x4g_A Nucleolysin TIAR; struc 99.7 6.3E-17 2.2E-21 127.7 11.8 81 324-405 22-102 (109)
131 2ywk_A Putative RNA-binding pr 99.7 2.3E-17 7.9E-22 126.8 9.0 82 111-195 12-93 (95)
132 1s79_A Lupus LA protein; RRM, 99.7 3.2E-17 1.1E-21 127.3 9.8 81 111-195 7-87 (103)
133 3ex7_B RNA-binding protein 8A; 99.7 2.8E-17 9.5E-22 133.4 9.8 83 322-405 17-105 (126)
134 1x5u_A Splicing factor 3B subu 99.7 7.8E-17 2.7E-21 126.3 12.0 84 322-406 10-99 (105)
135 2cq3_A RNA-binding protein 9; 99.7 9.6E-17 3.3E-21 125.3 12.4 86 110-199 10-95 (103)
136 2dnh_A Bruno-like 5, RNA bindi 99.7 8.7E-17 3E-21 126.0 12.2 83 323-406 11-101 (105)
137 2dgs_A DAZ-associated protein 99.7 1.1E-16 3.6E-21 124.1 12.5 82 323-406 6-93 (99)
138 2do4_A Squamous cell carcinoma 99.7 1.5E-16 5E-21 123.5 13.3 86 204-291 13-98 (100)
139 3n9u_C Cleavage and polyadenyl 99.7 2.2E-17 7.6E-22 138.5 9.3 82 113-196 53-136 (156)
140 2cpe_A RNA-binding protein EWS 99.7 3.9E-17 1.3E-21 129.8 10.2 87 111-199 11-105 (113)
141 2fy1_A RNA-binding motif prote 99.7 7.7E-17 2.6E-21 128.5 11.8 80 325-405 5-89 (116)
142 2cq0_A Eukaryotic translation 99.7 8.5E-17 2.9E-21 125.6 11.8 89 203-292 10-98 (103)
143 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.8E-17 2.3E-21 126.1 11.2 85 111-199 11-95 (103)
144 2ytc_A PRE-mRNA-splicing facto 99.7 4.7E-17 1.6E-21 122.3 9.9 77 323-400 8-85 (85)
145 2cqc_A Arginine/serine-rich sp 99.7 1.2E-16 4E-21 122.8 12.2 85 203-288 10-94 (95)
146 2x1f_A MRNA 3'-END-processing 99.7 7.9E-17 2.7E-21 124.0 11.0 84 207-291 1-84 (96)
147 1whw_A Hypothetical protein ri 99.7 9.1E-17 3.1E-21 124.4 11.4 87 205-292 5-91 (99)
148 1wi8_A EIF-4B, eukaryotic tran 99.7 1.7E-16 5.9E-21 124.0 13.0 81 323-406 11-98 (104)
149 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-16 4E-21 122.0 11.7 82 112-197 5-86 (92)
150 1oo0_B CG8781-PA, drosophila Y 99.7 3.7E-17 1.3E-21 129.3 9.1 84 112-197 23-106 (110)
151 2dnp_A RNA-binding protein 14; 99.7 1.1E-16 3.6E-21 121.7 11.3 79 324-405 6-84 (90)
152 1x5s_A Cold-inducible RNA-bind 99.7 7.2E-17 2.5E-21 125.8 10.6 82 323-405 8-95 (102)
153 2do0_A HnRNP M, heterogeneous 99.7 1.5E-16 5.3E-21 126.6 12.7 84 111-197 11-94 (114)
154 2do0_A HnRNP M, heterogeneous 99.7 3.6E-16 1.2E-20 124.5 14.8 82 323-405 11-97 (114)
155 3s7r_A Heterogeneous nuclear r 99.7 3.9E-17 1.4E-21 123.3 8.7 80 111-193 7-86 (87)
156 2jrs_A RNA-binding protein 39; 99.7 1.9E-16 6.6E-21 124.4 12.9 87 203-290 21-107 (108)
157 1x4d_A Matrin 3; structural ge 99.7 4.1E-17 1.4E-21 125.7 8.6 81 111-197 11-92 (102)
158 2cpf_A RNA binding motif prote 99.7 9E-17 3.1E-21 124.2 10.6 81 325-406 3-92 (98)
159 1p1t_A Cleavage stimulation fa 99.7 2.7E-17 9.3E-22 128.7 7.8 83 113-197 6-88 (104)
160 1x5o_A RNA binding motif, sing 99.7 2.5E-16 8.7E-21 125.3 13.5 85 111-196 21-111 (114)
161 2cq1_A PTB-like protein L; RRM 99.7 7.3E-17 2.5E-21 124.5 9.9 84 111-200 11-94 (101)
162 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.2E-22 136.3 6.3 120 253-406 6-131 (135)
163 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.3E-17 3.2E-21 120.6 10.2 81 206-287 5-85 (85)
164 1p27_B RNA-binding protein 8A; 99.7 1.4E-16 4.7E-21 125.1 11.5 86 204-290 19-104 (106)
165 3q2s_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 148.7 6.9 75 326-401 67-149 (229)
166 2la4_A Nuclear and cytoplasmic 99.7 5E-17 1.7E-21 126.4 8.8 77 325-402 25-101 (101)
167 3p5t_L Cleavage and polyadenyl 99.7 3.2E-17 1.1E-21 124.5 7.4 82 209-291 2-85 (90)
168 1wez_A HnRNP H', FTP-3, hetero 99.7 8.9E-17 3E-21 124.8 10.1 81 112-197 12-92 (102)
169 2cqh_A IGF-II mRNA-binding pro 99.7 4.1E-17 1.4E-21 124.8 8.1 80 324-405 5-86 (93)
170 2mss_A Protein (musashi1); RNA 99.7 3.2E-17 1.1E-21 120.0 7.1 75 117-194 1-75 (75)
171 2ek1_A RNA-binding protein 12; 99.7 2.2E-17 7.5E-22 126.9 6.5 81 113-195 13-93 (95)
172 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-16 6.2E-21 123.7 11.8 85 111-199 11-95 (103)
173 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.3E-17 2.8E-21 137.0 10.6 138 256-406 11-156 (165)
174 2cpi_A CCR4-NOT transcription 99.7 2.2E-16 7.4E-21 124.9 12.2 80 324-404 12-103 (111)
175 1x5t_A Splicing factor 3B subu 99.7 9.4E-17 3.2E-21 123.6 9.9 86 206-292 3-89 (96)
176 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.6E-21 126.6 10.3 84 111-200 27-110 (119)
177 2dnm_A SRP46 splicing factor; 99.7 1E-16 3.4E-21 125.2 10.1 88 204-292 9-96 (103)
178 1x5p_A Negative elongation fac 99.7 4.9E-16 1.7E-20 119.7 13.8 81 323-406 11-91 (97)
179 2la6_A RNA-binding protein FUS 99.7 2.5E-16 8.6E-21 121.9 12.2 84 203-287 8-99 (99)
180 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.8E-21 129.9 10.6 86 111-198 18-103 (126)
181 3r27_A HnRNP L, heterogeneous 99.7 5.8E-17 2E-21 123.5 8.3 81 111-197 17-97 (100)
182 3ulh_A THO complex subunit 4; 99.7 9.6E-17 3.3E-21 126.2 9.9 82 111-195 25-106 (107)
183 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.2E-21 129.6 10.7 87 203-290 41-127 (129)
184 3ucg_A Polyadenylate-binding p 99.7 6.9E-17 2.4E-21 122.5 8.5 80 114-196 5-84 (89)
185 2cpe_A RNA-binding protein EWS 99.7 2.6E-16 8.8E-21 125.1 12.3 83 322-405 10-106 (113)
186 1x4h_A RNA-binding protein 28; 99.7 2.3E-16 7.8E-21 125.0 11.8 88 204-292 11-104 (111)
187 2kvi_A Nuclear polyadenylated 99.7 5.7E-17 1.9E-21 124.8 8.1 80 324-406 7-87 (96)
188 2e5h_A Zinc finger CCHC-type a 99.7 1.9E-16 6.4E-21 121.4 10.9 83 204-287 12-94 (94)
189 1wg5_A Heterogeneous nuclear r 99.7 1.5E-16 5.2E-21 124.2 10.4 82 111-196 11-93 (104)
190 2kt5_A RNA and export factor-b 99.7 3.1E-16 1.1E-20 126.8 12.5 85 111-198 31-115 (124)
191 1whx_A Hypothetical protein ri 99.7 5.7E-17 2E-21 128.1 8.0 77 326-403 9-85 (111)
192 2rs2_A Musashi-1, RNA-binding 99.7 4.5E-17 1.6E-21 128.3 7.4 84 111-197 21-104 (109)
193 4a8x_A RNA-binding protein wit 99.7 1.9E-16 6.6E-21 119.7 10.5 78 326-404 3-87 (88)
194 1x4a_A Splicing factor, argini 99.7 3E-16 1E-20 123.8 12.0 83 111-198 18-100 (109)
195 1wf1_A RNA-binding protein RAL 99.7 3.4E-16 1.2E-20 123.7 12.3 79 324-405 24-103 (110)
196 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.8E-17 1.6E-21 126.2 7.1 82 111-196 15-97 (100)
197 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-16 5.5E-21 124.8 10.3 82 321-405 25-106 (108)
198 2hvz_A Splicing factor, argini 99.7 9.7E-17 3.3E-21 124.8 8.8 77 328-405 1-78 (101)
199 2div_A TRNA selenocysteine ass 99.7 2.8E-16 9.4E-21 121.7 11.3 85 205-290 6-95 (99)
200 3lqv_A PRE-mRNA branch site pr 99.7 4.7E-17 1.6E-21 129.8 7.0 105 205-353 5-109 (115)
201 2cq2_A Hypothetical protein LO 99.7 1.5E-16 5.1E-21 124.3 9.5 81 324-405 22-109 (114)
202 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4E-17 1.4E-21 120.1 6.0 76 116-194 1-76 (77)
203 2dng_A Eukaryotic translation 99.7 4.2E-16 1.4E-20 121.6 12.2 86 204-292 11-96 (103)
204 2xnq_A Nuclear polyadenylated 99.7 3.4E-16 1.2E-20 120.5 11.4 80 321-403 16-96 (97)
205 2dgv_A HnRNP M, heterogeneous 99.7 1.5E-16 5E-21 121.5 9.1 81 324-405 5-89 (92)
206 2khc_A Testis-specific RNP-typ 99.7 3.9E-16 1.3E-20 125.0 12.1 79 321-400 34-118 (118)
207 2dgw_A Probable RNA-binding pr 99.7 1.9E-16 6.6E-21 120.5 9.8 82 111-197 6-87 (91)
208 3ns6_A Eukaryotic translation 99.7 4.9E-17 1.7E-21 126.0 6.4 83 206-289 4-93 (100)
209 3beg_B Splicing factor, argini 99.7 1.5E-16 5.1E-21 126.6 9.4 79 325-405 14-97 (115)
210 2dgp_A Bruno-like 4, RNA bindi 99.7 2.4E-16 8E-21 123.8 10.4 88 204-292 9-99 (106)
211 2dis_A Unnamed protein product 99.7 1.8E-16 6.3E-21 125.1 9.8 86 112-199 5-94 (109)
212 2err_A Ataxin-2-binding protei 99.7 1.9E-16 6.6E-21 124.7 9.8 81 321-402 23-107 (109)
213 1oo0_B CG8781-PA, drosophila Y 99.7 2.5E-16 8.6E-21 124.5 10.5 87 204-291 22-108 (110)
214 2dhg_A TRNA selenocysteine ass 99.7 3.1E-16 1.1E-20 122.6 10.6 86 205-292 6-93 (104)
215 2fc9_A NCL protein; structure 99.7 8.3E-16 2.8E-20 119.5 13.0 82 323-405 11-94 (101)
216 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-16 5.5E-21 124.6 8.9 78 325-403 26-106 (111)
217 4a8x_A RNA-binding protein wit 99.7 2.5E-16 8.5E-21 119.1 9.7 83 207-290 3-86 (88)
218 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-16 5.8E-21 122.0 8.9 80 113-197 7-90 (96)
219 2hgl_A HNRPF protein, heteroge 99.7 9.3E-17 3.2E-21 130.9 7.8 80 112-195 41-123 (136)
220 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-16 5.5E-21 131.5 9.4 82 111-194 59-140 (140)
221 2cpy_A RNA-binding protein 12; 99.7 6.4E-17 2.2E-21 128.6 6.6 82 111-196 11-93 (114)
222 2ki2_A SS-DNA binding protein 99.7 4.1E-17 1.4E-21 124.0 5.2 79 116-197 2-80 (90)
223 1why_A Hypothetical protein ri 99.7 6.3E-16 2.2E-20 119.1 11.9 81 111-197 13-93 (97)
224 3pgw_S U1-70K; protein-RNA com 99.7 2.7E-17 9.1E-22 161.1 4.9 86 205-291 99-184 (437)
225 1wel_A RNA-binding protein 12; 99.7 1.2E-16 4.2E-21 129.1 7.8 81 112-195 22-102 (124)
226 2db1_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 127.6 7.7 80 112-195 14-96 (118)
227 2ywk_A Putative RNA-binding pr 99.7 5.1E-16 1.7E-20 119.2 10.8 83 204-288 12-94 (95)
228 2a3j_A U1 small nuclear ribonu 99.7 4.2E-16 1.4E-20 125.5 10.7 81 112-197 26-110 (127)
229 3s7r_A Heterogeneous nuclear r 99.7 7E-16 2.4E-20 116.3 11.3 81 204-286 7-87 (87)
230 3ucg_A Polyadenylate-binding p 99.7 5E-16 1.7E-20 117.7 10.5 81 207-289 5-85 (89)
231 2cq4_A RNA binding motif prote 99.7 5.8E-17 2E-21 129.0 5.5 81 113-196 23-103 (114)
232 2fc8_A NCL protein; structure 99.7 1E-15 3.5E-20 119.1 12.5 83 322-405 10-95 (102)
233 3n9u_C Cleavage and polyadenyl 99.7 4E-16 1.4E-20 130.8 10.7 83 207-290 54-138 (156)
234 2dh8_A DAZ-associated protein 99.7 4.2E-16 1.4E-20 122.1 10.1 87 204-292 12-98 (105)
235 2cqp_A RNA-binding protein 12; 99.7 4.3E-16 1.5E-20 120.4 9.9 84 205-289 12-95 (98)
236 1p1t_A Cleavage stimulation fa 99.7 2.2E-16 7.7E-21 123.4 8.4 85 207-292 7-91 (104)
237 3ulh_A THO complex subunit 4; 99.7 8.8E-16 3E-20 120.7 11.8 82 204-287 25-106 (107)
238 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-16 5.5E-21 124.8 7.4 81 111-195 7-90 (107)
239 2dnn_A RNA-binding protein 12; 99.7 1.4E-16 4.7E-21 124.8 6.9 77 113-194 14-90 (109)
240 2krb_A Eukaryotic translation 99.7 1.8E-16 6.3E-21 117.7 7.3 69 115-185 1-75 (81)
241 2fc8_A NCL protein; structure 99.7 5.4E-16 1.8E-20 120.8 10.1 83 111-198 11-93 (102)
242 2rs2_A Musashi-1, RNA-binding 99.6 5E-16 1.7E-20 122.3 9.9 88 203-292 20-107 (109)
243 1h2v_Z 20 kDa nuclear CAP bind 99.6 1E-15 3.4E-20 129.1 12.5 87 204-291 35-121 (156)
244 2dgw_A Probable RNA-binding pr 99.6 1.4E-15 4.8E-20 115.7 12.1 82 205-290 7-88 (91)
245 1x4c_A Splicing factor, argini 99.6 6.7E-16 2.3E-20 121.5 10.6 81 112-199 12-95 (108)
246 1fj7_A Nucleolin RBD1, protein 99.6 8.5E-17 2.9E-21 125.1 5.3 82 112-197 14-95 (101)
247 1s79_A Lupus LA protein; RRM, 99.6 4.7E-16 1.6E-20 120.7 9.5 80 206-288 9-88 (103)
248 2e5j_A Methenyltetrahydrofolat 99.6 9.3E-16 3.2E-20 118.2 11.1 80 323-404 15-96 (97)
249 2ek1_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 120.4 8.4 81 207-288 14-94 (95)
250 1x4f_A Matrin 3; structural ge 99.6 5E-16 1.7E-20 121.3 9.5 80 112-197 22-102 (112)
251 1sjr_A Polypyrimidine tract-bi 99.6 7E-16 2.4E-20 128.1 10.7 83 113-199 44-126 (164)
252 2kt5_A RNA and export factor-b 99.6 2.4E-15 8.2E-20 121.5 13.4 86 204-291 31-116 (124)
253 3q2s_C Cleavage and polyadenyl 99.6 2.5E-16 8.6E-21 140.9 8.3 80 114-195 67-148 (229)
254 2fc9_A NCL protein; structure 99.6 4.8E-16 1.6E-20 120.8 8.9 83 111-199 11-93 (101)
255 2m2b_A RNA-binding protein 10; 99.6 2.2E-16 7.5E-21 128.9 7.2 86 204-291 19-110 (131)
256 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-15 4.9E-20 117.1 11.5 80 111-197 15-94 (97)
257 2cpj_A Non-POU domain-containi 99.6 9.2E-16 3.2E-20 118.7 10.4 79 111-197 11-89 (99)
258 2dnq_A RNA-binding protein 4B; 99.6 1.4E-15 4.8E-20 115.4 11.2 78 112-199 5-82 (90)
259 2cqg_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.7E-20 117.1 12.7 87 203-292 10-96 (103)
260 1x4b_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 122.2 10.5 78 326-405 26-109 (116)
261 1nu4_A U1A RNA binding domain; 99.6 8.7E-16 3E-20 118.4 9.7 79 324-403 5-90 (97)
262 2a3j_A U1 small nuclear ribonu 99.6 6.8E-16 2.3E-20 124.3 9.4 79 324-403 26-111 (127)
263 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-16 5.8E-21 116.1 5.3 74 117-193 1-74 (75)
264 2wbr_A GW182, gawky, LD47780P; 99.6 7.7E-16 2.6E-20 112.8 8.7 74 207-287 6-79 (89)
265 2e5i_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 119.2 13.0 76 328-404 26-104 (124)
266 2nlw_A Eukaryotic translation 99.6 4.1E-16 1.4E-20 122.0 7.8 81 111-195 11-98 (105)
267 2hgn_A Heterogeneous nuclear r 99.6 1.8E-16 6.1E-21 129.6 5.7 81 111-196 42-122 (139)
268 2mss_A Protein (musashi1); RNA 99.6 3.9E-16 1.3E-20 114.1 7.0 75 210-286 1-75 (75)
269 3zzy_A Polypyrimidine tract-bi 99.6 1.1E-15 3.9E-20 122.1 10.2 77 326-403 27-107 (130)
270 2cpi_A CCR4-NOT transcription 99.6 9.8E-16 3.4E-20 121.1 9.8 86 205-291 12-103 (111)
271 1wez_A HnRNP H', FTP-3, hetero 99.6 1.3E-15 4.5E-20 118.2 10.2 78 323-403 11-93 (102)
272 1x4b_A Heterogeneous nuclear r 99.6 7.6E-16 2.6E-20 122.9 9.1 85 206-292 25-109 (116)
273 1x4e_A RNA binding motif, sing 99.6 2.4E-16 8E-21 118.4 5.7 81 206-287 3-83 (85)
274 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.9E-16 1.3E-20 121.0 7.1 84 204-290 15-99 (100)
275 2cpx_A Hypothetical protein FL 99.6 1.5E-15 5.2E-20 121.0 10.7 82 324-406 22-109 (115)
276 1x5o_A RNA binding motif, sing 99.6 3E-15 1E-19 119.1 12.3 84 204-289 21-112 (114)
277 1wg1_A KIAA1579 protein, homol 99.6 1E-15 3.5E-20 115.6 9.1 76 326-403 4-79 (88)
278 2cpx_A Hypothetical protein FL 99.6 5.3E-16 1.8E-20 123.7 7.8 87 111-199 21-107 (115)
279 2err_A Ataxin-2-binding protei 99.6 1.1E-15 3.8E-20 120.3 9.5 86 201-289 22-107 (109)
280 2dis_A Unnamed protein product 99.6 1E-15 3.5E-20 120.7 9.2 85 206-291 6-94 (109)
281 2ytc_A PRE-mRNA-splicing facto 99.6 1.2E-15 4.1E-20 114.5 9.1 76 111-194 8-84 (85)
282 2dha_A FLJ20171 protein; RRM d 99.6 5.3E-16 1.8E-20 124.1 7.5 78 113-194 21-102 (123)
283 2hgm_A HNRPF protein, heteroge 99.6 5.4E-16 1.9E-20 124.2 7.5 79 112-195 39-119 (126)
284 2jvo_A Nucleolar protein 3; nu 99.6 1E-15 3.5E-20 120.2 8.7 77 111-197 27-103 (108)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.4E-15 1.5E-19 122.8 13.0 83 203-286 58-140 (140)
286 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.4E-16 1.9E-20 114.0 6.6 76 209-286 1-76 (77)
287 2jwn_A Embryonic polyadenylate 99.6 1.4E-15 4.7E-20 123.0 9.6 78 326-405 35-118 (124)
288 2diu_A KIAA0430 protein; struc 99.6 1.4E-15 4.7E-20 112.4 8.6 75 326-405 7-87 (96)
289 2jvr_A Nucleolar protein 3; RN 99.6 4.8E-16 1.6E-20 121.9 6.4 79 112-196 25-104 (111)
290 2cq4_A RNA binding motif prote 99.6 8.3E-16 2.8E-20 122.3 7.8 83 206-290 23-105 (114)
291 2lcw_A RNA-binding protein FUS 99.4 3.8E-17 1.3E-21 130.5 0.0 80 325-405 5-98 (116)
292 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.6E-20 118.2 8.8 75 113-195 25-99 (101)
293 2jwn_A Embryonic polyadenylate 99.6 2.5E-15 8.4E-20 121.5 10.4 84 206-291 34-117 (124)
294 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 126.1 9.2 77 326-403 45-125 (164)
295 1wg5_A Heterogeneous nuclear r 99.6 2.6E-15 9.1E-20 117.1 10.0 84 205-291 12-96 (104)
296 2e5g_A U6 snRNA-specific termi 99.6 4.5E-15 1.5E-19 113.6 11.1 79 325-405 6-85 (94)
297 2ki2_A SS-DNA binding protein 99.6 3E-16 1E-20 119.2 4.4 81 209-291 2-82 (90)
298 2dgu_A Heterogeneous nuclear r 99.6 2.6E-15 8.9E-20 117.0 9.8 79 112-200 8-86 (103)
299 1fjc_A Nucleolin RBD2, protein 99.6 4E-15 1.4E-19 114.4 10.6 82 322-405 11-94 (96)
300 1x4g_A Nucleolysin TIAR; struc 99.6 2.4E-15 8.1E-20 118.6 9.5 79 113-199 23-101 (109)
301 2e44_A Insulin-like growth fac 99.6 2.9E-15 9.8E-20 115.2 9.7 79 324-403 12-93 (96)
302 2hgl_A HNRPF protein, heteroge 99.6 1.8E-15 6.1E-20 123.3 8.9 82 205-289 41-125 (136)
303 2lcw_A RNA-binding protein FUS 99.4 5.8E-17 2E-21 129.4 0.0 85 112-198 4-96 (116)
304 2db1_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 120.2 9.3 82 205-289 14-98 (118)
305 2hgn_A Heterogeneous nuclear r 99.6 3.7E-16 1.3E-20 127.7 4.6 124 158-291 2-125 (139)
306 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-15 5.5E-20 121.3 8.2 83 113-200 26-109 (130)
307 2cpy_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 119.8 8.6 83 205-290 12-95 (114)
308 2e5i_A Heterogeneous nuclear r 99.6 6.5E-15 2.2E-19 117.4 11.5 78 115-198 25-103 (124)
309 2f3j_A RNA and export factor b 99.6 3.1E-15 1.1E-19 128.3 10.2 83 111-196 84-166 (177)
310 2xs2_A Deleted in azoospermia- 99.6 5.5E-16 1.9E-20 120.7 5.1 81 112-197 6-86 (102)
311 2dnn_A RNA-binding protein 12; 99.6 2.7E-15 9.2E-20 117.4 9.0 79 207-289 15-93 (109)
312 2nlw_A Eukaryotic translation 99.6 2.7E-15 9.3E-20 117.3 8.8 83 205-290 12-101 (105)
313 2e44_A Insulin-like growth fac 99.6 4.6E-15 1.6E-19 114.1 9.9 80 112-197 12-92 (96)
314 2e5g_A U6 snRNA-specific termi 99.6 6.8E-15 2.3E-19 112.6 10.5 78 112-197 5-82 (94)
315 2kvi_A Nuclear polyadenylated 99.6 4.8E-15 1.6E-19 113.9 9.7 78 111-198 6-84 (96)
316 2dnp_A RNA-binding protein 14; 99.6 4.3E-15 1.5E-19 112.7 9.2 77 111-197 5-81 (90)
317 1nu4_A U1A RNA binding domain; 99.6 1.1E-15 3.7E-20 117.8 5.9 81 112-197 5-89 (97)
318 1wel_A RNA-binding protein 12; 99.6 1.8E-15 6.1E-20 122.2 7.3 84 205-290 22-105 (124)
319 2diu_A KIAA0430 protein; struc 99.6 1.2E-14 4.3E-19 107.3 10.9 77 113-201 6-88 (96)
320 1whx_A Hypothetical protein ri 99.6 3.2E-15 1.1E-19 118.0 8.0 77 113-197 8-84 (111)
321 2j8a_A Histone-lysine N-methyl 99.6 1.3E-15 4.6E-20 119.1 5.6 75 116-192 3-91 (136)
322 2bz2_A Negative elongation fac 99.6 5.8E-15 2E-19 118.2 9.3 79 324-405 36-114 (121)
323 2krb_A Eukaryotic translation 99.6 1.9E-15 6.4E-20 112.2 6.0 73 208-283 1-80 (81)
324 2hzc_A Splicing factor U2AF 65 99.6 6.3E-15 2.1E-19 111.1 8.7 71 326-398 5-86 (87)
325 1wf0_A TDP-43, TAR DNA-binding 99.6 5.1E-15 1.7E-19 111.8 8.1 77 326-405 4-81 (88)
326 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-15 5.4E-20 110.9 5.0 75 210-286 1-75 (75)
327 2dnl_A Cytoplasmic polyadenyla 99.6 4.3E-15 1.5E-19 118.0 7.8 64 113-177 6-72 (114)
328 3d2w_A TAR DNA-binding protein 99.6 2.5E-15 8.6E-20 113.5 6.1 78 111-197 7-84 (89)
329 2dgt_A RNA-binding protein 30; 99.6 2.4E-14 8.3E-19 109.0 11.6 80 204-292 6-85 (92)
330 2cq2_A Hypothetical protein LO 99.6 4.6E-15 1.6E-19 115.9 7.5 78 112-195 22-104 (114)
331 3d2w_A TAR DNA-binding protein 99.6 1.5E-14 5E-19 109.2 9.9 77 323-404 7-86 (89)
332 1fj7_A Nucleolin RBD1, protein 99.6 1.5E-14 5.2E-19 112.2 10.1 79 324-405 14-98 (101)
333 2lmi_A GRSF-1, G-rich sequence 99.6 3.7E-15 1.3E-19 117.0 6.6 82 205-289 8-92 (107)
334 2cpd_A Apobec-1 stimulating pr 99.6 3.9E-14 1.3E-18 109.5 12.1 80 203-291 10-91 (99)
335 2j8a_A Histone-lysine N-methyl 99.6 9.7E-15 3.3E-19 114.3 8.4 81 209-290 3-97 (136)
336 2dha_A FLJ20171 protein; RRM d 99.6 7.4E-15 2.5E-19 117.4 7.9 81 206-289 21-105 (123)
337 1x5p_A Negative elongation fac 99.5 2.4E-14 8.4E-19 110.1 10.4 79 111-199 11-89 (97)
338 2xnq_A Nuclear polyadenylated 99.5 3E-14 1E-18 109.5 10.9 78 203-289 17-95 (97)
339 3egn_A RNA-binding protein 40; 99.5 2.3E-15 7.9E-20 124.9 4.4 84 112-197 42-130 (143)
340 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4.2E-19 111.6 8.2 81 205-291 13-93 (96)
341 1wf1_A RNA-binding protein RAL 99.5 2.9E-14 9.9E-19 112.5 10.3 78 205-291 24-102 (110)
342 3beg_B Splicing factor, argini 99.5 1.5E-14 5.2E-19 114.9 8.8 67 113-186 14-80 (115)
343 2f3j_A RNA and export factor b 99.5 2E-14 6.8E-19 123.2 9.9 84 205-290 85-168 (177)
344 2hgm_A HNRPF protein, heteroge 99.5 8.9E-15 3E-19 117.2 6.8 81 205-289 39-121 (126)
345 2xs2_A Deleted in azoospermia- 99.5 8.6E-15 2.9E-19 113.9 6.2 82 206-291 7-88 (102)
346 3u1l_A PRE-mRNA-splicing facto 99.5 1.2E-14 4E-19 129.2 7.6 81 324-405 131-232 (240)
347 2cqh_A IGF-II mRNA-binding pro 99.5 2.5E-14 8.5E-19 109.2 8.2 79 206-292 6-86 (93)
348 1wg1_A KIAA1579 protein, homol 99.5 3.7E-14 1.3E-18 106.9 8.7 76 207-290 4-79 (88)
349 3egn_A RNA-binding protein 40; 99.5 2.6E-14 9E-19 118.5 8.5 81 324-405 42-133 (143)
350 2pe8_A Splicing factor 45; RRM 99.5 1.1E-13 3.9E-18 107.4 10.4 76 325-401 6-93 (105)
351 2hzc_A Splicing factor U2AF 65 99.5 2.5E-14 8.7E-19 107.7 6.2 72 112-192 3-85 (87)
352 1wf0_A TDP-43, TAR DNA-binding 99.5 2.4E-14 8.1E-19 108.1 5.9 78 113-199 3-80 (88)
353 2pe8_A Splicing factor 45; RRM 99.5 2E-13 6.7E-18 106.1 11.1 83 205-288 5-93 (105)
354 2bz2_A Negative elongation fac 99.5 1.2E-13 4E-18 110.6 9.5 77 111-197 35-111 (121)
355 2dit_A HIV TAT specific factor 99.5 5.1E-13 1.7E-17 105.5 12.8 81 323-404 11-104 (112)
356 2dnl_A Cytoplasmic polyadenyla 99.5 1.5E-13 5.2E-18 109.0 8.3 79 206-288 6-87 (114)
357 2voo_A Lupus LA protein; RNA-b 99.5 3.2E-13 1.1E-17 117.5 10.8 81 207-290 108-188 (193)
358 2voo_A Lupus LA protein; RNA-b 99.4 1E-12 3.5E-17 114.2 13.5 73 327-401 109-186 (193)
359 3v4m_A Splicing factor U2AF 65 99.4 6.1E-13 2.1E-17 103.3 9.2 76 325-401 3-96 (105)
360 3u1l_A PRE-mRNA-splicing facto 99.4 3.6E-13 1.2E-17 119.6 8.6 80 112-197 131-229 (240)
361 2dit_A HIV TAT specific factor 99.4 1.2E-12 4.2E-17 103.3 10.8 81 111-197 11-102 (112)
362 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.9E-12 1E-16 98.1 11.4 77 327-406 10-94 (100)
363 3ue2_A Poly(U)-binding-splicin 99.4 2.2E-12 7.4E-17 102.1 9.2 75 326-401 19-108 (118)
364 3v4m_A Splicing factor U2AF 65 99.3 2.5E-12 8.7E-17 99.8 8.3 83 206-289 3-97 (105)
365 3tht_A Alkylated DNA repair pr 99.3 2.3E-12 7.7E-17 120.8 9.4 77 323-400 14-97 (345)
366 3ue2_A Poly(U)-binding-splicin 99.3 5E-12 1.7E-16 100.0 9.2 81 207-288 19-108 (118)
367 3s6e_A RNA-binding protein 39; 99.3 8.8E-12 3E-16 97.9 9.9 75 325-400 5-91 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.2E-11 7.5E-16 93.2 11.3 77 113-198 8-91 (100)
369 1jmt_A Splicing factor U2AF 35 99.3 1.9E-12 6.5E-17 100.4 4.4 72 213-286 20-103 (104)
370 3tht_A Alkylated DNA repair pr 99.3 7.5E-12 2.6E-16 117.3 8.8 111 111-230 14-130 (345)
371 1jmt_A Splicing factor U2AF 35 99.3 1.6E-12 5.4E-17 100.8 3.4 67 332-399 20-103 (104)
372 1owx_A Lupus LA protein, SS-B, 99.2 8.5E-11 2.9E-15 92.2 10.2 80 321-400 12-94 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 7.7E-11 2.6E-15 86.3 9.2 74 325-402 5-86 (91)
374 3s6e_A RNA-binding protein 39; 99.1 2.7E-10 9.3E-15 89.4 9.0 79 206-289 5-93 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.0 4.4E-10 1.5E-14 82.6 6.4 75 323-401 11-94 (95)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.5E-09 5.1E-14 85.1 8.7 74 112-191 15-90 (121)
377 2l9w_A U4/U6 snRNA-associated- 98.8 1.5E-08 5.1E-13 75.8 9.2 72 325-397 19-95 (117)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 1.6E-08 5.6E-13 74.0 8.0 73 207-289 6-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.7 4.2E-08 1.4E-12 87.3 9.0 61 339-400 141-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.6 9.2E-08 3.1E-12 85.1 8.9 68 220-288 141-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 4.6E-12 69.4 6.3 73 206-288 13-94 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.3 2.7E-06 9.2E-11 63.7 8.8 73 207-286 20-97 (117)
383 1wey_A Calcipressin 1; structu 98.1 5.9E-06 2E-10 61.8 7.0 76 326-402 4-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.9 0.00014 4.9E-09 54.1 9.9 75 207-290 7-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00031 1.1E-08 52.3 10.3 74 326-403 7-85 (104)
386 1uw4_A UPF3X; nonsense mediate 97.7 0.00012 4.2E-09 53.8 6.9 67 116-182 2-70 (91)
387 1wwh_A Nucleoporin 35, nucleop 97.5 0.00028 9.5E-09 54.4 7.5 73 325-400 22-95 (119)
388 1whv_A Poly(A)-specific ribonu 97.5 0.00044 1.5E-08 50.7 8.0 56 114-178 15-70 (100)
389 1uw4_A UPF3X; nonsense mediate 97.5 0.00062 2.1E-08 50.1 8.4 72 328-400 2-86 (91)
390 1wey_A Calcipressin 1; structu 97.3 0.00071 2.4E-08 50.6 6.8 75 208-289 5-84 (104)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.00069 2.4E-08 49.9 4.7 53 117-178 8-60 (101)
392 1whv_A Poly(A)-specific ribonu 97.0 0.0028 9.6E-08 46.5 7.7 56 326-385 15-70 (100)
393 2l08_A Regulator of nonsense t 96.9 0.00058 2E-08 50.5 3.2 69 114-182 8-78 (97)
394 2l08_A Regulator of nonsense t 96.8 0.003 1E-07 46.7 6.6 75 325-400 7-94 (97)
395 3ctr_A Poly(A)-specific ribonu 96.7 0.0036 1.2E-07 46.1 5.8 54 328-385 7-60 (101)
396 3p3d_A Nucleoporin 53; structu 96.6 0.0022 7.5E-08 50.1 4.5 71 327-400 7-97 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.3 0.0018 6.3E-08 62.7 3.0 56 114-175 52-107 (464)
398 1wwh_A Nucleoporin 35, nucleop 96.2 0.018 6E-07 44.4 7.4 73 207-288 23-96 (119)
399 3pq1_A Poly(A) RNA polymerase; 95.5 0.0078 2.7E-07 58.3 3.5 54 327-382 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 90.5 0.32 1.1E-05 37.9 4.6 78 208-288 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 88.6 1.4 4.7E-05 43.5 8.7 57 115-180 440-496 (507)
402 4eyt_A Telomerase associated p 84.8 5.2 0.00018 28.4 7.4 56 326-384 11-66 (129)
403 3d45_A Poly(A)-specific ribonu 81.6 4.4 0.00015 39.9 8.4 56 326-385 439-494 (507)
404 2pk2_A Cyclin-T1, protein TAT; 74.4 0.63 2.2E-05 43.7 0.0 14 337-350 227-240 (358)
405 2g0c_A ATP-dependent RNA helic 70.7 9.3 0.00032 26.4 5.5 58 339-400 13-75 (76)
406 1xn9_A 30S ribosomal protein S 48.9 57 0.0019 24.0 6.5 49 218-267 28-80 (101)
407 2v94_A RPS24, 30S ribosomal pr 48.5 13 0.00046 27.7 3.0 49 218-267 37-89 (107)
408 2g1d_A 30S ribosomal protein S 44.0 12 0.00042 27.4 2.2 48 218-266 29-80 (98)
409 3fry_A Probable copper-exporti 43.8 54 0.0018 21.7 5.6 56 327-384 6-61 (73)
410 1ywx_A 30S ribosomal protein S 43.7 59 0.002 24.0 5.8 48 218-266 28-79 (102)
411 4eyt_A Telomerase associated p 43.2 85 0.0029 22.2 8.4 59 113-179 10-68 (129)
412 2g0c_A ATP-dependent RNA helic 40.6 38 0.0013 23.1 4.4 61 218-287 11-75 (76)
413 2xzm_P RPS24E; ribosome, trans 40.2 25 0.00086 27.8 3.6 49 218-267 31-83 (149)
414 3u5c_Y RP50, 40S ribosomal pro 37.3 1.2E+02 0.0042 23.5 7.0 49 218-267 33-85 (135)
415 4e8u_A Putative uncharacterize 35.9 85 0.0029 25.6 6.2 55 328-382 13-81 (172)
416 2cu1_A Mitogen-activated prote 33.2 1.1E+02 0.0037 22.3 5.6 68 332-403 21-89 (103)
417 4e8u_A Putative uncharacterize 32.0 99 0.0034 25.2 6.0 50 117-169 14-74 (172)
418 4a4j_A Pacszia, cation-transpo 29.2 69 0.0024 20.6 4.1 56 328-383 4-61 (69)
419 3dxs_X Copper-transporting ATP 28.7 1.2E+02 0.0042 19.7 5.7 56 328-383 4-62 (74)
420 3lpe_A Putative transcription 28.6 49 0.0017 23.8 3.3 21 156-176 49-69 (92)
421 3j21_T 50S ribosomal protein L 21.3 2.2E+02 0.0076 20.1 5.7 56 212-270 26-82 (86)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-44 Score=338.88 Aligned_cols=241 Identities=19% Similarity=0.313 Sum_probs=218.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
..+++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEE
Confidence 3678999999999999999999999999 999988 45678999999999999999999999998 45777777
Q ss_pred cccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 013061 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (450)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 272 (450)
++. ..++|||+|||.++++++|+++|+ .||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|+
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 643 457999999999999999999995 99999999999999899999999999999999999999999
Q ss_pred CceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCC-CHHHHHHhcccc
Q 013061 273 GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV-SDEDLREPFSQF 351 (450)
Q Consensus 273 ~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~F~~~ 351 (450)
+..+.|+.|.|.++.++... ......++|||+|||.++ ++++|+++|+.|
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~-----------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~ 209 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLT-----------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAV 209 (284)
T ss_dssp TCEETTEECEEEECCGGGCC-----------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS
T ss_pred CCEeCCcEEEEEECCCCCCC-----------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCC
Confidence 99999999999999765332 122456899999999995 999999999999
Q ss_pred CceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 352 GEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 352 G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
|.|.+|.|..+ +++|||+|.+ .++|.+|+..|||..|.|+.|+|+|++++..
T Consensus 210 G~i~~v~i~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 210 HSPTFCQLACGQDGQLKGFAVLEYET-AEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCSEEEEEECSSCCEEEEEEEECSS-HHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCeEEEEEEECCCCCcccEEEEEeCC-HHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999998875 7899999999 9999999999999999999999999987653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.4e-43 Score=333.47 Aligned_cols=246 Identities=17% Similarity=0.353 Sum_probs=209.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.. ++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV--GQNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcEEE
Confidence 4567899999999999999999999999999999999998743 57999999999999999995 899888 556777
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
+.++ ..++|||+|||.++++++|+++|+ .|| .|..+.++.+.. +.++|+|||+|.+.++|.+|+.
T Consensus 112 v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 112 VSHL------------TECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EEEC------------CSCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEC------------CCCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 7665 477999999999999999999995 999 999999998876 7889999999999999999999
Q ss_pred HhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCC-CCHHHHHHhc
Q 013061 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VSDEDLREPF 348 (450)
Q Consensus 270 ~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F 348 (450)
.|++..+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRESF 232 (292)
T ss_dssp HHTTCEETTEECEEEECCCC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHH
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHHH
Confidence 99999999999999999876543210 123456789999999999 9999999999
Q ss_pred cccCceEEEEeeCC-------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 349 SQFGEILSVKIPVG-------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 349 ~~~G~v~~v~i~~~-------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
+.||.|.+|+|+.+ +++|||+|.+ .++|.+|+ .|||..|.|+.|+|.|++++
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~-~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFEN-KDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEEEEEEESS-HHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred hccCCeeEEEEEecCCcCCCCceEEEEEeCC-HHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999764 5899999999 99999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.7e-34 Score=253.52 Aligned_cols=172 Identities=28% Similarity=0.515 Sum_probs=151.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
+..+.++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|.+|++.+++..+ .++.++
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~ 88 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVR 88 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccc
Confidence 345678999999999999999999999999999999999999999999999999999999999999999988 456777
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
+.++..... .......+|||+|||.++|+++|+++|+ .||.|.++.|++|. +.++|||||+|.+.++|.+|++.
T Consensus 89 ~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 89 IMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp EEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccccccc---ccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHH
Confidence 776653321 1223456899999999999999999995 99999999999985 45799999999999999999999
Q ss_pred hCCceecCccEEEeecCCCC
Q 013061 271 MNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 271 l~~~~~~g~~i~v~~~~~~~ 290 (450)
||+..|+|+.|+|.++.++.
T Consensus 163 lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HTTCEETTEECEEEECCCHH
T ss_pred hCCCEECCEEEEEEEcCCCc
Confidence 99999999999999998754
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-32 Score=245.02 Aligned_cols=167 Identities=32% Similarity=0.520 Sum_probs=150.3
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..+.++|||+|||+++|+++|+++| +.||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.++.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 3467899999999999999999999 499999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC--
Q 013061 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-- 362 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-- 362 (450)
++....... ....++|||+|||+++++++|+++|+.||.|.+|+|+.+
T Consensus 91 ~~~~~~~~~------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~ 140 (213)
T 4f02_A 91 WSQRDPSLR------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140 (213)
T ss_dssp ECCCCTHHH------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred ccccccccc------------------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC
Confidence 987653321 112468999999999999999999999999999999864
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
+++|||+|.+ .++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 141 ~~~g~~fV~f~~-~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 141 GSKGYGFVHFET-QEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEEEEEESS-HHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CCceEEEEEeCC-HHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 6899999999 999999999999999999999999998643
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.5e-32 Score=241.16 Aligned_cols=177 Identities=18% Similarity=0.367 Sum_probs=150.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. ++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEee
Confidence 446788999999999999999999999999999999999999999999999999999999999965 77777 557777
Q ss_pred eccccccCCCC-cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 013061 191 LNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (450)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 269 (450)
+.++....... .......++|||+|||.++|+++|+++|+ .||.|..+.++.+..++.++|+|||+|.+.++|.+|+.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 77765443222 23334568999999999999999999995 99999999999998899999999999999999999998
Q ss_pred HhCCceecCccEEEeecCCCCCC
Q 013061 270 EMNGVYCSSRPMRIDVATPKKAS 292 (450)
Q Consensus 270 ~l~~~~~~g~~i~v~~~~~~~~~ 292 (450)
. ++..|+|+.|.|.++.++...
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp C-SCCEETTEECEEEECC-----
T ss_pred h-CCcEECCEEEEEEecCChhHh
Confidence 5 899999999999999887654
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.2e-32 Score=234.27 Aligned_cols=165 Identities=26% Similarity=0.503 Sum_probs=152.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 468999999999999999999999999999999999998999999999999999999999999999998 567888888
Q ss_pred ccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
+.... .....++|||+|||.++++++|+++|+ .||.|..+.+.++..++.++|+|||+|.+.++|.+|++.|++
T Consensus 80 ~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCS-----STTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCc-----ccCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 76442 234568999999999999999999995 999999999999988899999999999999999999999999
Q ss_pred ceecC--ccEEEeec
Q 013061 274 VYCSS--RPMRIDVA 286 (450)
Q Consensus 274 ~~~~g--~~i~v~~~ 286 (450)
..+.| ++|+|.++
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999885
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=233.42 Aligned_cols=165 Identities=31% Similarity=0.611 Sum_probs=151.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
|+|||+|||+++|+++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|.+|++.|++..+ .++.+++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 6899999999999999999999999999999999974 78999999999999999999999999999 56778887776
Q ss_pred ccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 013061 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 275 (450)
.... ....+.++|||+|||.++++++|+++| +.||.|.++.++++..++.++|+|||+|.+.++|.+|+..||+..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 4432 334567899999999999999999999 599999999999998899999999999999999999999999999
Q ss_pred ecCccEEEeecC
Q 013061 276 CSSRPMRIDVAT 287 (450)
Q Consensus 276 ~~g~~i~v~~~~ 287 (450)
++|+.|+|.+++
T Consensus 154 ~~g~~i~v~~a~ 165 (166)
T 3md3_A 154 LNGRPLRINWAA 165 (166)
T ss_dssp ETTEECEEEESC
T ss_pred cCCcEEEEEecC
Confidence 999999999986
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.7e-32 Score=243.88 Aligned_cols=176 Identities=20% Similarity=0.393 Sum_probs=154.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4578999999999999999999999999999999999998999999999999999999999999999998 45677776
Q ss_pred cccccCCCCc------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHH
Q 013061 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
++........ ......++|||+|||.++++++|+++|+ .||.|..+.++++..+++++|+|||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 6553321111 1235668999999999999999999995 99999999999998899999999999999999999
Q ss_pred HHHHhCCceecCccEEEeecCCCCC
Q 013061 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 267 A~~~l~~~~~~g~~i~v~~~~~~~~ 291 (450)
|++.||+..|.|+.|+|.++.++..
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999988754
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.1e-32 Score=231.76 Aligned_cols=164 Identities=27% Similarity=0.501 Sum_probs=150.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
+++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.+++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 68999999999999999999999999999999999998999999999999999999999999999988 5677888777
Q ss_pred cccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 013061 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 274 (450)
.... .....++|||+|||.++++++|+++|+ .||.|..+.+..+..++.++|+|||+|.+.++|.+|++.||+.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6432 233567899999999999999999995 9999999999999888999999999999999999999999999
Q ss_pred eecCcc--EEEeec
Q 013061 275 YCSSRP--MRIDVA 286 (450)
Q Consensus 275 ~~~g~~--i~v~~~ 286 (450)
.+.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888775
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.8e-31 Score=229.95 Aligned_cols=168 Identities=23% Similarity=0.439 Sum_probs=149.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCC--CcceeEEEEeccHHHHHHHHHHhcCCCC-CCCCCcce
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFR 190 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~-~~~~~~i~ 190 (450)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+ .+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 8999999999999999999999999765 34577787
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
+.++...... ....++|||+|||.++|+++|+++|+ .||.|.++.++++. ++.++|+|||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 7776644322 33567999999999999999999995 99999999999996 489999999999999999999999
Q ss_pred hCCceec---CccEEEeecC
Q 013061 271 MNGVYCS---SRPMRIDVAT 287 (450)
Q Consensus 271 l~~~~~~---g~~i~v~~~~ 287 (450)
||+..+. +++|+|.|++
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998775 4999999974
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=4e-31 Score=233.42 Aligned_cols=173 Identities=23% Similarity=0.406 Sum_probs=146.1
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||.++|+++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 445678999999999999999999995 999999999999999999999999999999999999974 889999999999
Q ss_pred eecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-
Q 013061 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~- 362 (450)
.++....... ........++|||+|||+++++++|+++|+.||.|.+|.|+.+
T Consensus 87 ~~~~~~~~~~--------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 87 KRAVSREDSQ--------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp EECCC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred ecccCccccc--------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 9987654321 0112345689999999999999999999999999999999864
Q ss_pred -----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 013061 363 -----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 363 -----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 406 (450)
+++|||+|.+ .++|.+|+.. ++..|+|+.|+|.|+.++....
T Consensus 141 ~~g~~~g~afV~F~~-~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDD-HDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp TTCCEEEEEEEEESS-HHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred CCCCccceEEEEECC-HHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 5899999999 9999999986 8999999999999999876543
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.2e-32 Score=233.99 Aligned_cols=165 Identities=26% Similarity=0.507 Sum_probs=146.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+ .++.+++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 578999999999999999999999999999999999999999999999999999999999974 3444 445566655
Q ss_pred ccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
+... ......++|||+|||.++++++|+++|+ .||.|..+.++.+..++.++|+|||+|.+.++|.+|++ +++
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 5422 1223467899999999999999999995 99999999999998899999999999999999999998 899
Q ss_pred ceecCccEEEeecCCC
Q 013061 274 VYCSSRPMRIDVATPK 289 (450)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (450)
..+.|+.|+|.++.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999876
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.3e-31 Score=224.52 Aligned_cols=160 Identities=28% Similarity=0.562 Sum_probs=146.2
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
++|||+|||.++|+++|+++|+ .||.|.++.+++++. +.++|+|||+|.+.++|.+|++.|++..+.++.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999994 999999999999975 78999999999999999999999999999999999999976
Q ss_pred CCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------
Q 013061 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------ 362 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------ 362 (450)
.... .....++|||+|||..+++++|+++|+.||.|.++.+..+
T Consensus 79 ~~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 128 (166)
T 3md3_A 79 SQQS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 128 (166)
T ss_dssp CCCC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred CCCC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 5431 2345679999999999999999999999999999999854
Q ss_pred CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 363 KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 363 ~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
+++|||+|.+ .++|.+|+..|||..|+|+.|+|+|++.
T Consensus 129 ~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 129 RGYGFVSFTS-QDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEESC-HHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ceEEEEEeCC-HHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 5799999999 9999999999999999999999999873
No 14
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=8.3e-31 Score=225.39 Aligned_cols=159 Identities=25% Similarity=0.479 Sum_probs=147.6
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
++++|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|+|||+|.+.++|.+|++.|++..+.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999999999999999999995 9999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
.+... ....++|||+|||..+++++|+++|+.||.|.++.+.++
T Consensus 81 ~~~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 128 (168)
T 1b7f_A 81 RPGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 128 (168)
T ss_dssp CCCSS--------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC
T ss_pred CCCcc--------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC
Confidence 76543 234579999999999999999999999999999999865
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWG 399 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 399 (450)
+++|||+|.+ .++|.+|++.|||..|.| +.|+|+||
T Consensus 129 ~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 129 RPRGVAFVRYNK-REEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CEEEEEEEEESS-HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcceEEEEEECC-HHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 3899999999 999999999999999987 99999986
No 15
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.8e-30 Score=223.00 Aligned_cols=159 Identities=28% Similarity=0.570 Sum_probs=146.1
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
++++|||+|||.++++++|+++|+ .||.|.++.++++..++.++|+|||+|.+.++|.+|++.|++..+.++.|+|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 357999999999999999999995 9999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
.+.... ...++|||+|||..+++++|+++|+.||.|.++++..+
T Consensus 80 ~~~~~~--------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 127 (167)
T 1fxl_A 80 RPSSAS--------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 127 (167)
T ss_dssp CCCCGG--------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred CCCccc--------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC
Confidence 765331 23568999999999999999999999999999998764
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeE--EEEEec
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQT--VRLSWG 399 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~--l~v~~~ 399 (450)
+++|||+|.+ .++|.+|++.|||..|.|+. |+|+||
T Consensus 128 ~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 128 VSRGVGFIRFDK-RIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CEEEEEEEEESS-HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CccceEEEEeCC-HHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 5899999999 99999999999999999965 899886
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1e-30 Score=234.44 Aligned_cols=176 Identities=20% Similarity=0.393 Sum_probs=150.8
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++|||+|||.++|+++|+++|+ .||.|.+|.++++..++.++|||||+|.+.++|.+|++.|++..|.++.|.|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 457999999999999999999994 9999999999999888999999999999999999999999999999999999888
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
........... .. .......++|||+|||.++++++|+++|+.||.|.+|+|..+
T Consensus 106 ~~~~~~~~~~~--~~-------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 164 (216)
T 2qfj_A 106 SNIGQAQPIID--QL-------------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG 164 (216)
T ss_dssp SCCGGGHHHHH--HH-------------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC
T ss_pred CCccccchhhh--hh-------------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 76543210000 00 001234679999999999999999999999999999999865
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 405 (450)
+++|||+|.+ .++|.+|++.||+..|+|+.|+|.|++++...
T Consensus 165 ~~~g~afV~F~~-~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 165 KHKGYGFIEYEK-AQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CEEEEEEEEESS-HHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CcCceEEEEecC-HHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 6899999999 99999999999999999999999999987544
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.1e-29 Score=219.78 Aligned_cols=161 Identities=24% Similarity=0.482 Sum_probs=143.1
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCC--CceeEEEEEeCCHHHHHHHHHHhCCceec---CccE
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i 281 (450)
.+++|||+|||+++|+++|+++|+ .||.|.++.++++..++ +++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467999999999999999999994 99999999999998876 89999999999999999999999998775 6777
Q ss_pred EEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC
Q 013061 282 RIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (450)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~ 361 (450)
.+.++...... ....++|||+|||.++++++|+++|+.||.|.+|.+.+
T Consensus 81 ~~~~~~~~~~~-------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 81 QMKPADSEKNN-------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp EEEECGGGCCS-------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred EEccccccccc-------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 77776554321 22457899999999999999999999999999999987
Q ss_pred C-----CcEEEEEeecCHHHHHHHHHHhcCCeeC---CeEEEEEecc
Q 013061 362 G-----KGCGFVQFANSRKDAEVALQKLQGTAIG---KQTVRLSWGR 400 (450)
Q Consensus 362 ~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~---g~~l~v~~~~ 400 (450)
+ +++|||+|.+ .++|.+|++.|||..+. ++.|+|+|+.
T Consensus 130 ~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 GPDGLSRGCAFVTFTT-RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTSCEEEEEEEEESS-HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCCCEEEEEEEEECC-HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 5 6899999999 99999999999998876 4999999973
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.3e-29 Score=234.04 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=149.9
Q ss_pred CCCCceEEECCCCCCCCHHHHH----HHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 280 (450)
..++++|||+|||.++++++|+ ++| +.||.|.+|++.+ +++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4568899999999999999976 899 4999999999886 5789999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcccccch------------------hhhhhhcC-C---------CCC---------------------
Q 013061 281 MRIDVATPKKASGYQQQYS------------------SQALVLAG-G---------PGS--------------------- 311 (450)
Q Consensus 281 i~v~~~~~~~~~~~~~~~~------------------~~~~~~~~-~---------~~~--------------------- 311 (450)
|+|.++..+.......... ........ . .+.
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999997654210000000 00000000 0 000
Q ss_pred --------------CC----------------CcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC
Q 013061 312 --------------NG----------------ARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (450)
Q Consensus 312 --------------~~----------------~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~ 361 (450)
.. ..............++|||+|||.++++++|+++|+.||.|.+|+|..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 00 000000112344678999999999999999999999999999999998
Q ss_pred CC-cEEEEEeecCHHHHHHHHHHhcCCeeC-CeEEEEEeccC
Q 013061 362 GK-GCGFVQFANSRKDAEVALQKLQGTAIG-KQTVRLSWGRN 401 (450)
Q Consensus 362 ~~-g~afV~F~~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~ 401 (450)
++ ++|||+|.+ .++|.+|++.|||+.|. |+.|+|+|++.
T Consensus 242 ~~~g~afV~f~~-~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 GRHDIAFVEFDN-EVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCcEEEEEeCC-HHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 76 999999999 99999999999999999 99999999973
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.8e-29 Score=228.04 Aligned_cols=192 Identities=22% Similarity=0.346 Sum_probs=150.7
Q ss_pred cCCCCceEEECCCCC-CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 204 EACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
...++++|||+|||. ++++++|+++|+ .||.|.+|.++++. +|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345678999999999 999999999994 99999999999875 67999999999999999999999999999999
Q ss_pred EeecCCCCCCcccccchhhhhh--hcCCC-CCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccC-ceEEEE
Q 013061 283 IDVATPKKASGYQQQYSSQALV--LAGGP-GSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG-EILSVK 358 (450)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~v~ 358 (450)
|.++.................. ..... ................+.++|||+|||..+++++|+++|+.|| .|.+|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9999865322111000000000 00000 0000000011112345679999999999999999999999999 999999
Q ss_pred eeC-CCcEEEEEeecCHHHHHHHHHHhcCCeeC-CeEEEEEeccCC
Q 013061 359 IPV-GKGCGFVQFANSRKDAEVALQKLQGTAIG-KQTVRLSWGRNP 402 (450)
Q Consensus 359 i~~-~~g~afV~F~~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 402 (450)
+.. ++++|||+|.+ .++|.+|++.|||..|. |+.|+|+|++++
T Consensus 184 i~~~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGS-VEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESS-HHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECC-HHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 954 78999999999 99999999999999999 999999999874
No 20
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1e-30 Score=231.13 Aligned_cols=169 Identities=20% Similarity=0.405 Sum_probs=145.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCC
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 181 (450)
..+++|||+|||+++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 4 5555555 456789999999999999999 899998
Q ss_pred CCCCCCcceeccccccCCCC---------------cccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCC
Q 013061 182 MPNTDQPFRLNWATFSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246 (450)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~ 246 (450)
+ .++.|++.++....... .......++|||+|||.++++++|+++|+ .||.|..+.+.++..
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 F--QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSA 151 (198)
T ss_dssp E--TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTT
T ss_pred E--cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCC
Confidence 8 56778888776432111 11225668999999999999999999995 999999999999988
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCC
Q 013061 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 247 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 291 (450)
++.++|+|||+|.+.++|.+|++.|++..++|+.|+|.++.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 899999999999999999999999999999999999999988653
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.8e-29 Score=217.96 Aligned_cols=160 Identities=20% Similarity=0.438 Sum_probs=142.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCC
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 181 (450)
++.++|||+|||+++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 677776654 4689999999999999999 899999
Q ss_pred CCCCCCcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCH
Q 013061 182 MPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (450)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~ 261 (450)
+ .++.+++.++.... .....++|||+|||.++++++|+++|+ .||.|..+.+.++..++.++|+|||+|.+.
T Consensus 75 ~--~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E--TTEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e--cCceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 8 56778887765332 223478999999999999999999995 999999999999988899999999999999
Q ss_pred HHHHHHHHHhCCceecCccEEEeecC
Q 013061 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287 (450)
Q Consensus 262 ~~a~~A~~~l~~~~~~g~~i~v~~~~ 287 (450)
++|.+|++.||+..++|+.|.|+++.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999874
No 22
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.8e-29 Score=232.18 Aligned_cols=173 Identities=16% Similarity=0.303 Sum_probs=157.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
..++|||+|||+++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999999988 567888888
Q ss_pred ccccCCCCcccCCCCceEEECCCCCCC-CHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 013061 194 ATFSGSDRRTEACSDLSIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nl~~~~-t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 272 (450)
+...... ......++|||+|||.++ ++++|+++|+ .||.|.++.++++. ++.++|+|||+|.+.++|.+|+..|+
T Consensus 172 a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 8755432 233567899999999996 9999999995 99999999999986 69999999999999999999999999
Q ss_pred CceecCccEEEeecCCCCCC
Q 013061 273 GVYCSSRPMRIDVATPKKAS 292 (450)
Q Consensus 273 ~~~~~g~~i~v~~~~~~~~~ 292 (450)
+..+.|+.|+|.++.++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999887653
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.3e-29 Score=222.39 Aligned_cols=164 Identities=14% Similarity=0.182 Sum_probs=137.8
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 113 DETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 113 ~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
.+.++|||+||| +.+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.|||..+ .++.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEE
Confidence 357899999999 899999999999999999999998763 58999999999999999999999999 4577777
Q ss_pred ccccccCCCCc--------------------------------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCe--e
Q 013061 192 NWATFSGSDRR--------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV--K 237 (450)
Q Consensus 192 ~~~~~~~~~~~--------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i--~ 237 (450)
.+++....... ....++++|||+|||.++|+++|+++|+ .||.| .
T Consensus 75 ~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~ 153 (205)
T 3tyt_A 75 CVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPT 153 (205)
T ss_dssp EECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCS
T ss_pred EEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceE
Confidence 77653221000 0113457899999999999999999995 99999 8
Q ss_pred EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCc----cEEEeec
Q 013061 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR----PMRIDVA 286 (450)
Q Consensus 238 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~----~i~v~~~ 286 (450)
+++++.+. +.++|+|||+|.+.++|.+||..||+..|.++ ++.|+++
T Consensus 154 ~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 89988775 55679999999999999999999999999776 5666654
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=3.1e-30 Score=223.41 Aligned_cols=166 Identities=19% Similarity=0.308 Sum_probs=144.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|..||.+.. .++.+..+++++|||||+|.+.++|.+|+ .|++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 4567899999999999999999999999998777 34555567899999999999999999999 5999998 467888
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
+.++..... ......++|||+|||.++++++|+++|+ .||.|..+ ..++.++|+|||+|.+.++|.+|+..
T Consensus 85 v~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDS---KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSC---STTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCccc---cccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 888765432 2334678999999999999999999995 89987765 45688999999999999999999999
Q ss_pred hCCceecCccEEEeecCCC
Q 013061 271 MNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 271 l~~~~~~g~~i~v~~~~~~ 289 (450)
|++..+.|+.|+|.++.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 25
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=4.8e-30 Score=220.41 Aligned_cols=159 Identities=25% Similarity=0.482 Sum_probs=143.9
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
++++|||+|||.++|+++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+|+.. +..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 467999999999999999999995 999999999999988999999999999999999999984 67889999999887
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---- 362 (450)
.++... ...++|||+|||.++++++|+++|+.||.|.++.+..+
T Consensus 79 ~~~~~~--------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g 126 (167)
T 2cjk_A 79 IPRDEQ--------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 126 (167)
T ss_dssp CCHHHH--------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS
T ss_pred cchhhc--------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC
Confidence 654221 12468999999999999999999999999999999865
Q ss_pred --CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 363 --KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 363 --~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
+|+|||+|.+ .++|.+|++ +++..|.|+.|+|.|++++
T Consensus 127 ~~~g~afV~f~~-~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 127 QSRGFGFVTYDS-ADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TTSEEEEEEESS-HHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ccceEEEEEECC-HHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 4899999999 999999998 8999999999999999875
No 26
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3.1e-29 Score=221.64 Aligned_cols=189 Identities=22% Similarity=0.334 Sum_probs=148.6
Q ss_pred CCceEEECCCCC-CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 207 SDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 207 ~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
.+++|||+|||. ++++++|+++|+ .||.|.+|.++++. +|+|||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 357999999999 999999999995 99999999998774 67999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhh--hhhcCCC-CCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccC-ceEEEEeeC
Q 013061 286 ATPKKASGYQQQYSSQA--LVLAGGP-GSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG-EILSVKIPV 361 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~v~i~~ 361 (450)
+................ ....... ...............+++++|||+|||..+++++|+++|+.|| .|.+|++.+
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 98653221110000000 0000000 0000000111122345689999999999999999999999999 999999955
Q ss_pred -CCcEEEEEeecCHHHHHHHHHHhcCCeeC-CeEEEEEeccCC
Q 013061 362 -GKGCGFVQFANSRKDAEVALQKLQGTAIG-KQTVRLSWGRNP 402 (450)
Q Consensus 362 -~~g~afV~F~~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 402 (450)
++++|||+|.+ .++|.+|+..|||..+. |+.|+|+|++++
T Consensus 156 ~~~g~afV~f~~-~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 KDRKMALIQMGS-VEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTSSCEEEECSS-HHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCcEEEEEeCC-HHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 68999999999 99999999999999999 999999999874
No 27
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.2e-28 Score=230.15 Aligned_cols=166 Identities=23% Similarity=0.410 Sum_probs=144.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
...++++|||+|||+++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..+ .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 34678999999999999999977 8999999999999886 578999999999999999999999999988 55
Q ss_pred CcceeccccccCCC------------------------------------------------------------------
Q 013061 187 QPFRLNWATFSGSD------------------------------------------------------------------ 200 (450)
Q Consensus 187 ~~i~~~~~~~~~~~------------------------------------------------------------------ 200 (450)
+.|+|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 77888777543310
Q ss_pred ----------------------------------------CcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEE
Q 013061 201 ----------------------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK 240 (450)
Q Consensus 201 ----------------------------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~ 240 (450)
......++++|||+|||.++++++|+++|+ .||.|.+|+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 001223467899999999999999999995 999999999
Q ss_pred EeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec-CccEEEeecC
Q 013061 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (450)
Q Consensus 241 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~~~ 287 (450)
++.++ +|+|||+|.+.++|.+|++.||+..|. |+.|+|.|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99654 579999999999999999999999999 9999999985
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.6e-29 Score=218.92 Aligned_cols=164 Identities=22% Similarity=0.442 Sum_probs=143.2
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||.++++++|+++|+ .||.+.. .++.+..++.++|||||+|.+.++|.+|+ .|++..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 345678999999999999999999995 8888776 34455567889999999999999999999 59999999999999
Q ss_pred eecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEee--C
Q 013061 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--V 361 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~--~ 361 (450)
.++.++... .....++|||+|||.++++++|+++|+.||.|..+ .. .
T Consensus 86 ~~~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 86 EKPKGRDSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp ECCCCSSCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred ecCCCcccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 999875432 12346899999999999999999999999999888 22 2
Q ss_pred CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 362 GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 362 ~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
.+++|||+|.+ .++|.+|+..|||..|+|+.|+|+|++++
T Consensus 135 ~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 135 SKGIAYIEFKS-EADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CCSEEEEECSS-HHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CceEEEEEECC-HHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 47999999999 99999999999999999999999999875
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=2.1e-29 Score=222.66 Aligned_cols=177 Identities=15% Similarity=0.332 Sum_probs=143.3
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcC----C-------CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~----g-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 275 (450)
.+++|||+|||.++|+++|+++|+ .| | .|.++.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 467999999999999999999995 88 4 4555544 455789999999999999999 899999
Q ss_pred ecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceE
Q 013061 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (450)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~ 355 (450)
+.|+.|.|.++............ .................++|||+|||..+++++|+++|+.||.|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSEN------------PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSC------------SSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred EcCceEEEeCCCCCCCCCCCcCC------------CcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 99999999998776432211000 000000111222345678999999999999999999999999999
Q ss_pred EEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 356 SVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 356 ~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
+|.+..+ +++|||+|.+ .++|.+|++.|||..|+|+.|+|+|++++..
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVD-INVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESS-SSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEeecCCCCCcceEEEEEECC-HHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999865 6899999999 9999999999999999999999999998654
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.2e-28 Score=217.81 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=140.3
Q ss_pred CCceEEECCCC-CCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 207 SDLSIFVGDLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 207 ~~~~l~v~nl~-~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
++++|||+||+ .++++++|+++|+ .||.|.+|+++++ .+|+|||+|.+.++|.+||+.||+..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46799999999 8999999999995 9999999999865 368999999999999999999999999999999999
Q ss_pred cCCCCCCcccc-cchhhhhhhcCCCCCCCCccc----CCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCce--EEEE
Q 013061 286 ATPKKASGYQQ-QYSSQALVLAGGPGSNGARVQ----GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI--LSVK 358 (450)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v--~~v~ 358 (450)
+.......... ..................... .......+++++|||+|||+++++++|+++|+.||.| .+|+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 97543211000 000000000000000000000 0011123567899999999999999999999999999 8999
Q ss_pred eeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCe----EEEEEec
Q 013061 359 IPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQ----TVRLSWG 399 (450)
Q Consensus 359 i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~----~l~v~~~ 399 (450)
+..+ +++|||+|.+ .++|.+|+..|||..|.|+ ++.|.|+
T Consensus 157 ~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8865 4899999999 9999999999999999986 4555543
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.8e-28 Score=220.33 Aligned_cols=165 Identities=16% Similarity=0.290 Sum_probs=142.8
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
..+.++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 35788999999999 99999999999999999999999875 57999999999999999999999999 557788
Q ss_pred eccccccCCCCc------------------------------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCC-CeeEE
Q 013061 191 LNWATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGA 239 (450)
Q Consensus 191 ~~~~~~~~~~~~------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v 239 (450)
|.++........ ....++++|||+|||.++++++|+++|+ .|| .|..+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEE
Confidence 877764311100 1123468999999999999999999995 999 99999
Q ss_pred EEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec-CccEEEeecCCC
Q 013061 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (450)
Q Consensus 240 ~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~~~~~ 289 (450)
.++.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|+|.|+++.
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99753 2679999999999999999999999999 999999999764
No 32
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=8.1e-29 Score=232.63 Aligned_cols=171 Identities=13% Similarity=0.297 Sum_probs=145.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
..++|||+|||+++++++|+++|+.|| .|.+|+++.++. ++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 578999999999999999999999999 999999999875 88999999999999999999999999999 55788888
Q ss_pred cccccCCCCc--ccCCCCceEEECCCCCC-CCHHHHHHHHhhcCCCeeEEEEeecCC-CCCceeEEEEEeCCHHHHHHHH
Q 013061 193 WATFSGSDRR--TEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAM 268 (450)
Q Consensus 193 ~~~~~~~~~~--~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~ 268 (450)
++.+...... ......++|||+|||.+ +++++|+++|+ .||.|..|.++++.. |+.++|+|||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 8775543332 24456789999999999 99999999995 999999999999876 6999999999999999999999
Q ss_pred HHhCCceecCccEEEeecCCC
Q 013061 269 TEMNGVYCSSRPMRIDVATPK 289 (450)
Q Consensus 269 ~~l~~~~~~g~~i~v~~~~~~ 289 (450)
.||+..|.|+.|.|.++.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=4e-28 Score=209.41 Aligned_cols=153 Identities=18% Similarity=0.441 Sum_probs=136.3
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcC----C-------CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~----g-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 275 (450)
++++|||+|||.++|+++|+++|+ .| | .|.++.+. +++|+|||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 468999999999999999999995 88 6 66666654 34789999999999999999 899999
Q ss_pred ecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceE
Q 013061 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (450)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~ 355 (450)
+.|+.|.|.++...... ...++|||+|||.++++++|+++|+.||.|.
T Consensus 75 ~~g~~i~v~~~~~~~~~--------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL--------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp ETTEECEEECCSSCCCC--------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ecCceeeecCCcccCCC--------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 99999999987654321 2267999999999999999999999999999
Q ss_pred EEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 356 SVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 356 ~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
+|.+..+ +++|||+|.+ .++|.+|++.|||..|+|+.|+|+|+.
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVD-INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESS-TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999875 5899999999 999999999999999999999999973
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3.1e-28 Score=215.22 Aligned_cols=163 Identities=17% Similarity=0.295 Sum_probs=141.0
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 114 ETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 114 ~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
..++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEE
Confidence 357999999999 99999999999999999999999875 57999999999999999999999999 55777777
Q ss_pred cccccCCCCc------------------------------ccCCCCceEEECCCCCCCCHHHHHHHHhhcCC-CeeEEEE
Q 013061 193 WATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKV 241 (450)
Q Consensus 193 ~~~~~~~~~~------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~~ 241 (450)
++........ ....++++|||+|||.++++++|+++|+ .|| .|..+.+
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEE
Confidence 7654321100 1123478999999999999999999995 999 9999998
Q ss_pred eecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceec-CccEEEeecCCC
Q 013061 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (450)
Q Consensus 242 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~i~v~~~~~~ 289 (450)
+.+. +|+|||+|.+.++|.+|+..|++..+. |+.|+|.|+++.
T Consensus 154 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7642 689999999999999999999999999 999999998764
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1e-27 Score=221.01 Aligned_cols=158 Identities=26% Similarity=0.523 Sum_probs=142.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..|++..+ .++.++|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v 90 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLRI 90 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeEe
Confidence 356689999999999999999999999999999999654 58999999999999999999999998 5678888
Q ss_pred ccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 013061 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (450)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 271 (450)
.++. +..+|||+|||.++|+++|+++|+ .||.|.+|.++.+ .+++++|+|||+|.+.++|.+|+..|
T Consensus 91 ~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 91 RFAT-----------HGAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EECC-----------CSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eecc-----------cCCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 8775 467899999999999999999995 9999999999999 57999999999999999999999999
Q ss_pred C-Cceec---CccEEEeecCCCC
Q 013061 272 N-GVYCS---SRPMRIDVATPKK 290 (450)
Q Consensus 272 ~-~~~~~---g~~i~v~~~~~~~ 290 (450)
+ +..+. +++|.|.++....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEE
T ss_pred cCCeEEecCCCceEEEeeccccC
Confidence 5 44444 9999999998654
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.1e-26 Score=211.03 Aligned_cols=156 Identities=30% Similarity=0.464 Sum_probs=139.9
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||.++|+++|+++|+ .||.|..|.+.++ +|+|||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 345678999999999999999999995 9999999998644 689999999999999999999999999999999
Q ss_pred eecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-
Q 013061 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~- 362 (450)
.++.+ .++|||+|||..+|+++|+++|+.||.|.+|.|+.+
T Consensus 91 ~~a~~--------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 91 RFATH--------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp EECCC--------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred eeccc--------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 99863 358999999999999999999999999999999865
Q ss_pred ----CcEEEEEeecCHHHHHHHHHHhc-CCeeC---CeEEEEEeccCCCCC
Q 013061 363 ----KGCGFVQFANSRKDAEVALQKLQ-GTAIG---KQTVRLSWGRNPGNK 405 (450)
Q Consensus 363 ----~g~afV~F~~~~~~A~~A~~~l~-g~~~~---g~~l~v~~~~~~~~~ 405 (450)
+++|||+|.+ .++|.+|+..|| +..+. ++.|.|.++......
T Consensus 133 ~g~~~g~afV~f~~-~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 133 RGRATGKGFVEFAA-KPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp TSCEEEEEEEEESS-HHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred CCCcCcEEEEEeCC-HHHHHHHHHHhcCCeEEecCCCceEEEeeccccCcc
Confidence 6899999999 999999999995 44554 999999999875433
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=6.6e-22 Score=167.71 Aligned_cols=146 Identities=24% Similarity=0.329 Sum_probs=116.1
Q ss_pred EEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCC-----CCcceecccc-ccCCCCcccCCCCceEEECCCC
Q 013061 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT-----DQPFRLNWAT-FSGSDRRTEACSDLSIFVGDLA 217 (450)
Q Consensus 144 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-----~~~i~~~~~~-~~~~~~~~~~~~~~~l~v~nl~ 217 (450)
+++|+.+.. +++||+||+|.+.++|++|++.+++...... .......... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 578888764 6999999999999999999988875432111 1111111111 1111222334567899999999
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCC
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 292 (450)
+++++++|+++|+ .||.|.+|.+++|+.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.++...
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999995 9999999999999889999999999999999999999999999999999999999887543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.6e-20 Score=159.13 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=109.4
Q ss_pred EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCccc
Q 013061 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQ 317 (450)
Q Consensus 238 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (450)
.+.|..+.. +++||+||+|.+.++|++|+..+++....+..+.+.......... .....
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 60 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT-------------------EGSHH 60 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE-------------------CCCCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc-------------------ccccc
Confidence 356666643 689999999999999999998887543333333222111110000 00000
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCC
Q 013061 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGK 391 (450)
Q Consensus 318 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g 391 (450)
..........++|||+|||+++++++|+++|+.||.|.+|.|+.+ +|+|||+|.+ .++|.+|++.|||..|.|
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD-KRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB-HHHHHHHHHHSTTEESSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC-HHHHHHHHHHhCCCEECC
Confidence 111223455789999999999999999999999999999999864 5899999999 999999999999999999
Q ss_pred eEEEEEeccCCCCCC
Q 013061 392 QTVRLSWGRNPGNKQ 406 (450)
Q Consensus 392 ~~l~v~~~~~~~~~~ 406 (450)
+.|+|+|++++....
T Consensus 140 ~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 140 RELRVQMARYGRPPD 154 (158)
T ss_dssp SEEEEEEECCSSCCC
T ss_pred eEEEEEECCCCCCCC
Confidence 999999999865443
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.5e-21 Score=162.47 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=115.0
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHh-CCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCC
Q 013061 248 GRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326 (450)
Q Consensus 248 ~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (450)
...+|+++|+|.+.++|++|++.+ |+..++| .|.+.++..+...... ...............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~~~ 72 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG----------------SHHHHHHMHRDSCPL 72 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS----------------SSSCCCCSCSSSSTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc----------------cccccccccccCCCC
Confidence 467899999999999999999999 9999999 9999987653221000 000011122334556
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
.++|||+|||+++++++|+++|+.||.|.+|+|+.+ +++|||+|.+ .++|.+|+..|||..|.|+.|+|+|++++.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFED-PRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESS-HHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECC-HHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 789999999999999999999999999999999987 8999999999 999999999999999999999999998864
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2e-21 Score=155.13 Aligned_cols=107 Identities=24% Similarity=0.427 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
.+.+|||+|||+++|+++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|.+|++.|++..+ .++.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 45689999999999999999999999999999999986 45899999999999999999999999999 567888888
Q ss_pred ccccCCCCc---ccCCCCceEEECCCCCCCCHHH
Q 013061 194 ATFSGSDRR---TEACSDLSIFVGDLAPDVTDSI 224 (450)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~ 224 (450)
+........ ......++|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 765433221 2233446799999999999864
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=6.1e-20 Score=146.41 Aligned_cols=110 Identities=22% Similarity=0.436 Sum_probs=75.1
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
.+.+|||+|||+++|+++|+++|+ .||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|++..|.|+.|+|.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356899999999999999999995 99999999999985 458999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHH
Q 013061 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDED 343 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 343 (450)
.++..+... ........++|||+|||+++|++.
T Consensus 81 ~~~~~~~~~------------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAE------------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------------------------------
T ss_pred CCccccccc------------------------cccccCCCCceEeCCCCCCccccc
Confidence 876543211 011123345799999999999874
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.4e-19 Score=151.78 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=110.6
Q ss_pred CCcceeEEEEeccHHHHHHHHHHh-cCCCCCCCCCcceeccccccC-----------CCCcccCCCCceEEECCCCCCCC
Q 013061 154 GQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPFRLNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVT 221 (450)
Q Consensus 154 g~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~l~v~nl~~~~t 221 (450)
.+.+|+++|+|.+.++|++|++.+ ++..+.+ .+++.++.... ..........++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 9999855 77777765421 12234455678999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCC
Q 013061 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (450)
Q Consensus 222 ~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 290 (450)
+++|+++|+ .||.|.+|.++++ ++|||||+|.+.++|.+|+..||+..|.|+.|+|+++.++.
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999995 9999999999876 57899999999999999999999999999999999998763
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=141.21 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++|+++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|++.||+..+ .++.|+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999 56789998
Q ss_pred cccc
Q 013061 193 WATF 196 (450)
Q Consensus 193 ~~~~ 196 (450)
|+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8864
No 44
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=148.76 Aligned_cols=87 Identities=24% Similarity=0.428 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|++|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999999998 567888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 888876543
No 45
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=6.5e-19 Score=148.77 Aligned_cols=82 Identities=27% Similarity=0.491 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYS-RADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHhCCCEECCeEEEEE
Confidence 346789999999999999999999999999999999764 4799999999 999999999999999999999999
Q ss_pred eccCCCCCC
Q 013061 398 WGRNPGNKQ 406 (450)
Q Consensus 398 ~~~~~~~~~ 406 (450)
|+++.....
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 999765443
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=134.31 Aligned_cols=82 Identities=29% Similarity=0.527 Sum_probs=77.9
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||+|||.++|+++|+++|+ .||.|.++.+++|+.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 013061 286 ATP 288 (450)
Q Consensus 286 ~~~ 288 (450)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=137.27 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.||+..+ .++.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 55777777
Q ss_pred ccc
Q 013061 193 WAT 195 (450)
Q Consensus 193 ~~~ 195 (450)
++.
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 764
No 48
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=131.15 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCe--eCCeEEEEEec
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTA--IGKQTVRLSWG 399 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~--~~g~~l~v~~~ 399 (450)
...+++++|||+|||+++|+++|+++|++||.|.+|.++++|++|||+|.+ .++|.+|++.|++.. |.|+.|+|+|+
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~-~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFED-VLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECC-HHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 345678899999999999999999999999999999999999999999999 999999999999886 78999999999
Q ss_pred cCC
Q 013061 400 RNP 402 (450)
Q Consensus 400 ~~~ 402 (450)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 875
No 49
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=5.4e-19 Score=173.11 Aligned_cols=84 Identities=24% Similarity=0.497 Sum_probs=76.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
....++|||+|||+.+|+++|.++|+.||.|+.|.|+.+ +++|||+|.+ .++|.+||..|||..|.|+.|+|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~-~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH-ERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeecc-HHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999999999999999999999999999864 6899999999 999999999999999999999999
Q ss_pred eccCCCCCCCC
Q 013061 398 WGRNPGNKQWR 408 (450)
Q Consensus 398 ~~~~~~~~~~~ 408 (450)
|+++....++.
T Consensus 178 ~a~~~~~~~~~ 188 (437)
T 3pgw_S 178 VERGRTVKGWR 188 (437)
T ss_pred EeCCCCCCCCC
Confidence 99986655443
No 50
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=6.7e-18 Score=131.84 Aligned_cols=81 Identities=27% Similarity=0.511 Sum_probs=74.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
..+.++|||+|||+++++++|+++|+.||.|.+|.++ +++|||+|.+ .++|.+|++.||+..|.|+.|+|.|++++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDE-RDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESS-HHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCC-HHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4567899999999999999999999999999999998 5699999999 999999999999999999999999999876
Q ss_pred CCCC
Q 013061 404 NKQW 407 (450)
Q Consensus 404 ~~~~ 407 (450)
....
T Consensus 85 ~~~~ 88 (103)
T 2dgu_A 85 QKRK 88 (103)
T ss_dssp CCCC
T ss_pred ccch
Confidence 5543
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=128.68 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHh--cCCeeCCeEEEEEec
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL--QGTAIGKQTVRLSWG 399 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l--~g~~~~g~~l~v~~~ 399 (450)
....++++|||+|||+++++++|+++|++||.|.+|.+++++++|||+|.+ .++|.+|++.| ++..|.|+.|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELAT-EEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECC-HHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 344567899999999999999999999999999999999999999999999 99999999987 467899999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+.+.-.
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 976644
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=131.26 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCC--eeCCeEEEEEecc
Q 013061 324 ESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGT--AIGKQTVRLSWGR 400 (450)
Q Consensus 324 ~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~--~~~g~~l~v~~~~ 400 (450)
..++++|||+|||+ ++++++|+++|++||.|.+|.|++++++|||+|.+ .++|.+|++.|++. .|.|++|+|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMAT-TEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESS-HHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECC-HHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 44678999999999 99999999999999999999999999999999999 99999999999864 5999999999999
Q ss_pred CCC
Q 013061 401 NPG 403 (450)
Q Consensus 401 ~~~ 403 (450)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 53
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=133.09 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc--CCeeCCeEEEEEecc
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ--GTAIGKQTVRLSWGR 400 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~ 400 (450)
.....++|||+|||+++++++|+++|++||.|.+|.|++++++|||+|.+ .++|.+|++.|+ +..|.|+.|+|.|++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~-~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNT-EEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECC-HHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 34567899999999999999999999999999999999999999999999 999999999886 478999999999999
Q ss_pred CCCCCC
Q 013061 401 NPGNKQ 406 (450)
Q Consensus 401 ~~~~~~ 406 (450)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 765443
No 54
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-17 Score=131.43 Aligned_cols=85 Identities=24% Similarity=0.451 Sum_probs=76.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 320 ~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
........++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFED-PRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESC-HHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECC-HHHHHHHHHHcCCCEECCeEEEE
Confidence 3444567789999999999999999999999999999999875 6799999999 99999999999999999999999
Q ss_pred EeccCCCCC
Q 013061 397 SWGRNPGNK 405 (450)
Q Consensus 397 ~~~~~~~~~ 405 (450)
+|+++....
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999986543
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=7.9e-18 Score=134.35 Aligned_cols=89 Identities=27% Similarity=0.543 Sum_probs=80.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
......++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3556789999999999999999999999999999999999998999999999999999999999999999998 56788
Q ss_pred eeccccccCCC
Q 013061 190 RLNWATFSGSD 200 (450)
Q Consensus 190 ~~~~~~~~~~~ 200 (450)
+|.|+......
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 88888765443
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-19 Score=135.58 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=73.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhc-CCCCCCCCCcceec
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS-GSLMPNTDQPFRLN 192 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-g~~~~~~~~~i~~~ 192 (450)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+|++.++ +..+ .++.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 57999999999999999999999999 89999999999999999999999999999999998764 4456 56889998
Q ss_pred ccccc
Q 013061 193 WATFS 197 (450)
Q Consensus 193 ~~~~~ 197 (450)
++.+.
T Consensus 79 ~a~~~ 83 (91)
T 2lxi_A 79 YSDPK 83 (91)
T ss_dssp CCCSC
T ss_pred EcCCC
Confidence 88754
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=132.55 Aligned_cols=86 Identities=30% Similarity=0.525 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999998 568888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 88887553
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=7.6e-18 Score=134.40 Aligned_cols=88 Identities=24% Similarity=0.324 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 568888
Q ss_pred eccccccCCC
Q 013061 191 LNWATFSGSD 200 (450)
Q Consensus 191 ~~~~~~~~~~ 200 (450)
|.++......
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 8888765443
No 59
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=129.94 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCC--eeCCeEEEEEec
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGT--AIGKQTVRLSWG 399 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~--~~~g~~l~v~~~ 399 (450)
....++++|||+|||+++++++|+++|++||.|.+|.|++++++|||+|.+ .++|.+|++.|++. .|.|+.|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN-IDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECC-HHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345567899999999999999999999999999999999999999999999 99999999998765 599999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+.+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 976543
No 60
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.5e-17 Score=130.34 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC-CCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-~~~~i 189 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..+.+ ..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44578999999999999999999999999999999999997 79999999999999999999999999998843 23788
Q ss_pred eeccccccCC
Q 013061 190 RLNWATFSGS 199 (450)
Q Consensus 190 ~~~~~~~~~~ 199 (450)
+|.++.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9988876543
No 61
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=130.19 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=76.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCC-----eEEEEEe
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGK-----QTVRLSW 398 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g-----~~l~v~~ 398 (450)
....++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||+|.+ .++|.+|++.||+..|.| +.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~-~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVR-KEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESS-HHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECC-HHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 345789999999999999999999999999999999987 999999999 999999999999999999 9999999
Q ss_pred ccCCCCCCC
Q 013061 399 GRNPGNKQW 407 (450)
Q Consensus 399 ~~~~~~~~~ 407 (450)
++++.....
T Consensus 90 a~~~~~~~~ 98 (108)
T 1x4c_A 90 DGPRSPSYG 98 (108)
T ss_dssp SSCCSCCCC
T ss_pred CCCCCCCCC
Confidence 998765543
No 62
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.7e-18 Score=124.52 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
.+..|+|+||++.+|+++|+++|.+||.|.++++..++|+|||+|.+ .++|.+|++.||+..+.|+.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~-~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTT-REEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECC-HHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 36789999999999999999999999999999999999999999999 999999999999999999999999985
No 63
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.5e-18 Score=142.30 Aligned_cols=125 Identities=20% Similarity=0.303 Sum_probs=83.4
Q ss_pred eEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE
Q 013061 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238 (450)
Q Consensus 159 ~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~ 238 (450)
++|++|.+...+..|+..+++....+... ..+ ..........++|||+|||.++++++|+++|+ .||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSY-----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGD 76 (135)
T ss_dssp --------------------------------CCS-----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC---CCc-----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEE
Confidence 67888999999999999888866533221 111 12233445678999999999999999999995 9999999
Q ss_pred EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCC
Q 013061 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (450)
Q Consensus 239 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 292 (450)
|.++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+....
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999888999999999999999999999999999999999999999876553
No 64
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=132.35 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC--ceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC--CCCCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM--PNTDQ 187 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~~~~ 187 (450)
...-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+++++|||||+|.+.++|.+|++.|++... ...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356679999999999999999999999994 77999999999999999999999999999999999999752 23678
Q ss_pred cceecccc
Q 013061 188 PFRLNWAT 195 (450)
Q Consensus 188 ~i~~~~~~ 195 (450)
+|+|.|++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 89998876
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.5e-18 Score=131.98 Aligned_cols=86 Identities=28% Similarity=0.431 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999998 567888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 88887553
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.4e-18 Score=130.85 Aligned_cols=87 Identities=25% Similarity=0.455 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999999998 567888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 888876543
No 67
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=131.54 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
.+.++|||+||++++++++|+++|+ .||.|.+|.|++|+.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4568999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013061 286 ATPKK 290 (450)
Q Consensus 286 ~~~~~ 290 (450)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97654
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=128.34 Aligned_cols=84 Identities=25% Similarity=0.538 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.++++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 56788888
Q ss_pred cccccC
Q 013061 193 WATFSG 198 (450)
Q Consensus 193 ~~~~~~ 198 (450)
++....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 887543
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=128.78 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++ |++..+ .++.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999998 999988 567888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 888875543
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=127.93 Aligned_cols=82 Identities=29% Similarity=0.608 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4678999999999999999999999999999999999998999999999999999999999999999988 56788888
Q ss_pred cccc
Q 013061 193 WATF 196 (450)
Q Consensus 193 ~~~~ 196 (450)
++..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 8764
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=130.00 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=77.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
....+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999988 56788
Q ss_pred eecccc
Q 013061 190 RLNWAT 195 (450)
Q Consensus 190 ~~~~~~ 195 (450)
+|.+++
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 887765
No 72
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=128.64 Aligned_cols=82 Identities=17% Similarity=0.397 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceE--------EEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
.....++|||+|||+++++++|+++|+.||.|.+ |+++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred CCCCCcceeccc
Q 013061 183 PNTDQPFRLNWA 194 (450)
Q Consensus 183 ~~~~~~i~~~~~ 194 (450)
.++.|+|.++
T Consensus 89 --~g~~l~V~~A 98 (99)
T 2la6_A 89 --SGNPIKVSFA 98 (99)
T ss_dssp --SSSBCEEEEC
T ss_pred --CCcEEEEEec
Confidence 4677887765
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=129.16 Aligned_cols=84 Identities=17% Similarity=0.342 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44577899999999999999999999999999999999998 899999999999999999999999999988 567888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8887654
No 74
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=128.38 Aligned_cols=82 Identities=21% Similarity=0.462 Sum_probs=76.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeC--CeEEEEEecc
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIG--KQTVRLSWGR 400 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~ 400 (450)
...+.++|||+|||.++++++|+++|+.||.|.+|.+.+++++|||+|.+ .++|.+|++.||+..|. |+.|+|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYES-LDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESS-HHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECC-HHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34567899999999999999999999999999999999999999999999 99999999999999999 9999999999
Q ss_pred CCCCC
Q 013061 401 NPGNK 405 (450)
Q Consensus 401 ~~~~~ 405 (450)
++..+
T Consensus 92 ~~~~~ 96 (97)
T 1why_A 92 SGPSS 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=128.86 Aligned_cols=87 Identities=25% Similarity=0.450 Sum_probs=78.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc
Q 013061 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (450)
Q Consensus 109 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~ 188 (450)
.......++|||+|||+++|+++|+++|+.||.|.+|+|+.+ +++++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 84 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKP 84 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSB
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcE
Confidence 345568899999999999999999999999999999999998 789999999999999999999999999999 6688
Q ss_pred ceeccccccCC
Q 013061 189 FRLNWATFSGS 199 (450)
Q Consensus 189 i~~~~~~~~~~ 199 (450)
|+|.++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 88888876543
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=130.20 Aligned_cols=85 Identities=24% Similarity=0.525 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 99 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMK 99 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999999998 567788
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 8877643
No 77
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=131.67 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcC--CeeCCeEEEEEe
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQG--TAIGKQTVRLSW 398 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g--~~~~g~~l~v~~ 398 (450)
.....++++|||+|||+++++++|+++|++||.|.+|.|++++++|||+|.+ .++|.+|++.|++ ..|.|+.|+|.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~-~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNT-EEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSC-HHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3345667899999999999999999999999999999999999999999999 9999999999874 689999999999
Q ss_pred ccCCCCC
Q 013061 399 GRNPGNK 405 (450)
Q Consensus 399 ~~~~~~~ 405 (450)
++++.-.
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9976544
No 78
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=3.5e-18 Score=129.86 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
.+|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|.+|++.||+..+ .++.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 4799999999999999999999999 999999999999999999999999999999999999999999 567788877
Q ss_pred cccc
Q 013061 194 ATFS 197 (450)
Q Consensus 194 ~~~~ 197 (450)
+...
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 7644
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=137.54 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
......++|||+|||.++++++|+++|+.||.|++|+|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS-GSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESS-HHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC-HHHHHHHHHHhCCCEECCeEEE
Confidence 34556789999999999999999999999999999999754 6899999999 9999999999999999999999
Q ss_pred EEeccCCCCC
Q 013061 396 LSWGRNPGNK 405 (450)
Q Consensus 396 v~~~~~~~~~ 405 (450)
|+|++++..+
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999987654
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=130.80 Aligned_cols=87 Identities=21% Similarity=0.435 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEec-CCCCCcceeEEEEeccHHHHHHHHHHh-cCCCCCCCCCc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQP 188 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~~~ 188 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+++ +.+++++|||||+|.+.++|.+|++.| ++..+ .++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCE
Confidence 4567899999999999999999999999999999999999 788999999999999999999999999 89998 4678
Q ss_pred ceeccccccCC
Q 013061 189 FRLNWATFSGS 199 (450)
Q Consensus 189 i~~~~~~~~~~ 199 (450)
|+|.++.....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 88888875533
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.4e-17 Score=130.80 Aligned_cols=88 Identities=20% Similarity=0.428 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCC-CCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~~~~~i 189 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++.. +.+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999976 44567889
Q ss_pred eeccccccC
Q 013061 190 RLNWATFSG 198 (450)
Q Consensus 190 ~~~~~~~~~ 198 (450)
+|.++....
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 998887554
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=130.76 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++++++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 446789999999999999999999999999999999999999999999999999999999999999999998 567888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 88887543
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=129.40 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 345778999999999999999999999999999999999999999999999999999999999999999988 567788
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87753
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-17 Score=126.63 Aligned_cols=85 Identities=34% Similarity=0.522 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
.......++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|+..||+..|.|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN-SADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESC-HHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECC-HHHHHHHHHHhCCCEECCEEEEE
Confidence 344566799999999999999999999999999999999876 7899999999 99999999999999999999999
Q ss_pred EeccCCCCCC
Q 013061 397 SWGRNPGNKQ 406 (450)
Q Consensus 397 ~~~~~~~~~~ 406 (450)
.|++++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999876554
No 85
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=130.63 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=76.9
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCC-CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC-CceecCccEEEee
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-GVYCSSRPMRIDV 285 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-~~~~~g~~i~v~~ 285 (450)
+++|||+|||.++|+++|+++|+ .|| .|.+|++++|+.++.++|||||+|.+.++|.+|++.++ +..+.|+.|+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999999999999999995 999 89999999999999999999999999999999998774 5679999999999
Q ss_pred cCCCCCC
Q 013061 286 ATPKKAS 292 (450)
Q Consensus 286 ~~~~~~~ 292 (450)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887543
No 86
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.1e-17 Score=125.13 Aligned_cols=81 Identities=35% Similarity=0.597 Sum_probs=75.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
+.+|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999998 5678888887
Q ss_pred ccc
Q 013061 195 TFS 197 (450)
Q Consensus 195 ~~~ 197 (450)
...
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 643
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=134.13 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=75.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
......++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999988 45677
Q ss_pred eeccc
Q 013061 190 RLNWA 194 (450)
Q Consensus 190 ~~~~~ 194 (450)
+|.++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 77665
No 88
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=7.4e-18 Score=126.70 Aligned_cols=81 Identities=22% Similarity=0.445 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 35789999999999999999999999999999999999988999999999999999999999999999998 5677887
Q ss_pred ccc
Q 013061 192 NWA 194 (450)
Q Consensus 192 ~~~ 194 (450)
.++
T Consensus 82 ~~a 84 (85)
T 3mdf_A 82 NLA 84 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 775
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=129.18 Aligned_cols=87 Identities=43% Similarity=0.794 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCce-EEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc-
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP- 188 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~- 188 (450)
.....++|||+|||+++++++|+++|+.||.|. +|+|++++.+++++|||||+|.+.++|.+|++.|++..+.+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 346789999999999999999999999999999 999999999999999999999999999999999999998554422
Q ss_pred -ceecccccc
Q 013061 189 -FRLNWATFS 197 (450)
Q Consensus 189 -i~~~~~~~~ 197 (450)
++|.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 888887644
No 90
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=127.47 Aligned_cols=83 Identities=25% Similarity=0.493 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
......++|||+|||..+++++|+++|+.||.|.+|.+.+++++|||+|.+ .++|.+|++.||+..|.|+.|+|.|+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~-~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLET-RTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSS-SHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECC-HHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 345667899999999999999999999999999999999999999999999 9999999999999999999999999998
Q ss_pred CCCC
Q 013061 402 PGNK 405 (450)
Q Consensus 402 ~~~~ 405 (450)
+...
T Consensus 89 ~~~~ 92 (99)
T 2cpj_A 89 SASL 92 (99)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.7e-17 Score=134.80 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999998 567888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.|+...
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 8887643
No 92
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=130.90 Aligned_cols=87 Identities=25% Similarity=0.385 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhc------CCCCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS------GSLMPN 184 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~------g~~~~~ 184 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.|+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 44678899999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CCCcceeccccccCC
Q 013061 185 TDQPFRLNWATFSGS 199 (450)
Q Consensus 185 ~~~~i~~~~~~~~~~ 199 (450)
.++.|+|.++.....
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 567888888875533
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=125.01 Aligned_cols=80 Identities=24% Similarity=0.498 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
....++|||+|||.++++++|+++|+.||.|.+|.+. +++|||+|.+ .++|.+|++.||+..|.|+.|+|+|++++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIED-KTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESS-HHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECC-HHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4567899999999999999999999999999999998 7899999999 999999999999999999999999999876
Q ss_pred CCC
Q 013061 404 NKQ 406 (450)
Q Consensus 404 ~~~ 406 (450)
...
T Consensus 82 ~~~ 84 (90)
T 2dnq_A 82 KAS 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 94
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.6e-18 Score=130.49 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=80.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|++..+ .++.++|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 48999999999999999999999999999999987 678999999999999999999999998 55678888887
Q ss_pred ccCCCCcc-----cCCCCceEEECCCCC
Q 013061 196 FSGSDRRT-----EACSDLSIFVGDLAP 218 (450)
Q Consensus 196 ~~~~~~~~-----~~~~~~~l~v~nl~~ 218 (450)
........ ......+|||+||+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCCC
Confidence 65433221 222367899999963
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.6e-17 Score=141.44 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=80.4
Q ss_pred EEeccHHHHHHHHHHhcCCCCCCCCCcceecccccc---------------CCCCcccCCCCceEEECCCCCCCCHHHHH
Q 013061 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS---------------GSDRRTEACSDLSIFVGDLAPDVTDSILQ 226 (450)
Q Consensus 162 V~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 226 (450)
.+|.+.++|..|+..|++......++.++..+.... ....+....+.++|||+|||.++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999998777555555555443211 01112234556789999999999999999
Q ss_pred HHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCC
Q 013061 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (450)
Q Consensus 227 ~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 292 (450)
++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.++...
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 9995 9999999999999989999999999999999999999999999999999999999876543
No 96
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-17 Score=124.24 Aligned_cols=80 Identities=18% Similarity=0.382 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
.....++|||+|||.++++++|+++|+.||.|.+|.+.+ ++|||+|.+ .++|.+|++.||+..|.|+.|+|+|++++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMER-AEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESC-HHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECC-HHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 455678999999999999999999999999999999985 499999999 99999999999999999999999999987
Q ss_pred CCC
Q 013061 403 GNK 405 (450)
Q Consensus 403 ~~~ 405 (450)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=136.49 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceE--EEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCC----CCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS----LMPN 184 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~----~~~~ 184 (450)
.....++|||+|||+++|+++|+++|+.||.|.. |+|++|+.+++++|||||+|.+. +|.+|++.|++. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 4467789999999999999999999999999977 99999999999999999999999 999999999998 66
Q ss_pred CCCcceecccccc
Q 013061 185 TDQPFRLNWATFS 197 (450)
Q Consensus 185 ~~~~i~~~~~~~~ 197 (450)
.++.|+|.++...
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 5677888887654
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=129.11 Aligned_cols=84 Identities=20% Similarity=0.433 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998 4678888
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 887643
No 99
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4e-17 Score=126.50 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=75.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF-PEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS-HHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC-HHHHHHHHHHhCCCEECCcEEEEE
Confidence 346789999999999999999999999999999999875 4899999999 999999999999999999999999
Q ss_pred eccCCCCCC
Q 013061 398 WGRNPGNKQ 406 (450)
Q Consensus 398 ~~~~~~~~~ 406 (450)
|++++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999876543
No 100
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.6e-18 Score=131.05 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=79.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999999998 568888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 888876543
No 101
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=125.48 Aligned_cols=80 Identities=26% Similarity=0.500 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
..+++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD-SECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC-HHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC-HHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35689999999999999999999999999999999875 5799999999 9999999999999999999999999
Q ss_pred ccCCCCC
Q 013061 399 GRNPGNK 405 (450)
Q Consensus 399 ~~~~~~~ 405 (450)
++++..+
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9987654
No 102
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=128.54 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcC--CeeCCeEEEEEecc
Q 013061 324 ESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQG--TAIGKQTVRLSWGR 400 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~ 400 (450)
..++++|||+|||++ +++++|+++|++||.|.+|.|.+++++|||+|.+ .++|.+|++.|++ ..|.|+.|+|.|++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMET-REDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSS-HHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECC-HHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 456889999999998 9999999999999999999999999999999999 9999999998864 56999999999998
Q ss_pred CCCCC
Q 013061 401 NPGNK 405 (450)
Q Consensus 401 ~~~~~ 405 (450)
.....
T Consensus 101 ~~~~~ 105 (112)
T 1x4f_A 101 KYKKL 105 (112)
T ss_dssp SCSSS
T ss_pred ccccc
Confidence 76544
No 103
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3e-17 Score=128.12 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=77.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
....+.++|||+|||+++++++|+++|+.|| |.+|+|++++.+++++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 85 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSL 85 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEE
Confidence 3456789999999999999999999999996 999999999999999999999999999999999 8999988 56788
Q ss_pred eeccccccCC
Q 013061 190 RLNWATFSGS 199 (450)
Q Consensus 190 ~~~~~~~~~~ 199 (450)
+|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 8888875433
No 104
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=127.78 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcC--CCCCCCCCcc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQPF 189 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~~~~~~i 189 (450)
+.+.++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.|++ ..+ .+++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEE
Confidence 457889999999999999999999999999999999976 48999999999999999998875 445 67899
Q ss_pred eeccccccCCC
Q 013061 190 RLNWATFSGSD 200 (450)
Q Consensus 190 ~~~~~~~~~~~ 200 (450)
+|.|+......
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99998755433
No 105
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8e-17 Score=125.75 Aligned_cols=83 Identities=29% Similarity=0.524 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYE-HRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESS-HHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECC-HHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34556789999999999999999999999999999999874 6899999999 999999999999999999999999
Q ss_pred eccCCCCC
Q 013061 398 WGRNPGNK 405 (450)
Q Consensus 398 ~~~~~~~~ 405 (450)
|++++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99986644
No 106
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=127.12 Aligned_cols=84 Identities=29% Similarity=0.522 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
......++|||+|||+++++++|+++|+.||.|.+|.|..+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSS-PEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESS-HHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECC-HHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456789999999999999999999999999999999854 7899999999 999999999999999999999999
Q ss_pred eccCCCCCC
Q 013061 398 WGRNPGNKQ 406 (450)
Q Consensus 398 ~~~~~~~~~ 406 (450)
|++++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 999876554
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=126.76 Aligned_cols=85 Identities=27% Similarity=0.476 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhc-cCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCC-CCCCCCc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~~~~~ 188 (450)
.....++|||+|||+++|+++|+++|+. ||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 3457789999999999999999999999 9999999999998 89999999999999999999999999998 8 4577
Q ss_pred ceeccccccC
Q 013061 189 FRLNWATFSG 198 (450)
Q Consensus 189 i~~~~~~~~~ 198 (450)
|+|.++....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 8888876543
No 108
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=128.04 Aligned_cols=82 Identities=28% Similarity=0.429 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEE
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l 394 (450)
.......++|||+|||+++++++|+++|+.||.|.+|+|+.+ +++|||+|.+ .++|.+|++.|++ .|.|+.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD-RAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS-HHHHHHHHTCSSC-EETTEEC
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC-HHHHHHHHHhCCC-cCCCEEE
Confidence 344567789999999999999999999999999999999875 5799999999 9999999999998 8999999
Q ss_pred EEEeccCCCC
Q 013061 395 RLSWGRNPGN 404 (450)
Q Consensus 395 ~v~~~~~~~~ 404 (450)
+|+|++....
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999987543
No 109
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.4e-17 Score=128.22 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
++++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.++|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 468999999999999999999999999999999999998999999999999999999999999999998 558888888
Q ss_pred ccccC
Q 013061 194 ATFSG 198 (450)
Q Consensus 194 ~~~~~ 198 (450)
+....
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 87543
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=6.4e-18 Score=131.02 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 113 DETKTIWIGDLFH------WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 113 ~~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
...++|||+|||+ ++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.||+..+ .+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CC
Confidence 4578999999999 999999999999999999999999999999999999999999999999999999999 44
Q ss_pred -Ccceeccccc
Q 013061 187 -QPFRLNWATF 196 (450)
Q Consensus 187 -~~i~~~~~~~ 196 (450)
+.|+|.++..
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 7788877753
No 111
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=132.18 Aligned_cols=86 Identities=28% Similarity=0.448 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
......++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++ .+ .++.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEE
Confidence 3556789999999999999999999999999999999999999999999999999999999999999998 66 56888
Q ss_pred eeccccccC
Q 013061 190 RLNWATFSG 198 (450)
Q Consensus 190 ~~~~~~~~~ 198 (450)
+|.++....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 888886543
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1.4e-16 Score=127.02 Aligned_cols=84 Identities=33% Similarity=0.648 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN-KWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC-HHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999875 5899999999 9999999999999999999999
Q ss_pred EEeccCCCCCC
Q 013061 396 LSWGRNPGNKQ 406 (450)
Q Consensus 396 v~~~~~~~~~~ 406 (450)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 113
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=9.2e-18 Score=128.06 Aligned_cols=81 Identities=20% Similarity=0.402 Sum_probs=74.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCC--eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc----eecCcc
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSSRP 280 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~--i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~~ 280 (450)
.-++|||+|||+++|+++|+++|+ .||. |.+|++++|+.+++++|||||+|.+.++|.+|++.||+. .++|+.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 346899999999999999999995 9995 679999999999999999999999999999999999986 589999
Q ss_pred EEEeecCC
Q 013061 281 MRIDVATP 288 (450)
Q Consensus 281 i~v~~~~~ 288 (450)
|.|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 114
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=126.17 Aligned_cols=80 Identities=26% Similarity=0.347 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 5688999999999999999999999999999999999999999999999999999999999999999988 45666666
Q ss_pred cc
Q 013061 193 WA 194 (450)
Q Consensus 193 ~~ 194 (450)
++
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 115
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=126.95 Aligned_cols=83 Identities=27% Similarity=0.536 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL-AEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSS-HHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECC-HHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999764 6899999999 99999999999999999999999
Q ss_pred EeccCCCCCC
Q 013061 397 SWGRNPGNKQ 406 (450)
Q Consensus 397 ~~~~~~~~~~ 406 (450)
.|++++..+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999876554
No 116
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=128.88 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCC-CCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.....++|||+|||+++++++|+++|+.|| |.+|+|+.++.+ ++++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 86 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRI 86 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEEC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEE
Confidence 456779999999999999999999999999 999999999887 999999999999999999999 9999998 56788
Q ss_pred eeccccccCC
Q 013061 190 RLNWATFSGS 199 (450)
Q Consensus 190 ~~~~~~~~~~ 199 (450)
+|.++.....
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 8888775543
No 117
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=127.72 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCC---CCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++. +++++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4678999999999999999999999999999999999876 668999999999999999999999999998 46788
Q ss_pred eeccccccCC
Q 013061 190 RLNWATFSGS 199 (450)
Q Consensus 190 ~~~~~~~~~~ 199 (450)
+|.++.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 8888875543
No 118
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=7.8e-17 Score=128.50 Aligned_cols=85 Identities=27% Similarity=0.518 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEE
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l 394 (450)
.......++|||+|||.++++++|+++|+.||.|.+|+|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN-PVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSS-HHHHHHHHHHHTTCEETTEEC
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECC-HHHHHHHHHHcCCCEECCEEE
Confidence 344456789999999999999999999999999999999865 3799999999 999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 013061 395 RLSWGRNPGNKQ 406 (450)
Q Consensus 395 ~v~~~~~~~~~~ 406 (450)
+|+|++++..+.
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999999876544
No 119
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=129.25 Aligned_cols=84 Identities=23% Similarity=0.459 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999 5678888
Q ss_pred ccccccC
Q 013061 192 NWATFSG 198 (450)
Q Consensus 192 ~~~~~~~ 198 (450)
.++....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 8887554
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=125.58 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++..+...+++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3457899999999999999999999999999999998864 5799999999999999999998765444788999
Q ss_pred eccccccCCC
Q 013061 191 LNWATFSGSD 200 (450)
Q Consensus 191 ~~~~~~~~~~ 200 (450)
|.++......
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9998765443
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=129.46 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++. ++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999988 88888 567888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 888875543
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=123.66 Aligned_cols=82 Identities=24% Similarity=0.416 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhcccc--CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQF--GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~--G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
.......++|||+|||+.+++++|+++|+.| |.|.+|.+. +++|||+|.+ .++|.+|+..||+..|.|+.|+|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSN-REDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESS-HHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCC-HHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3445667899999999999999999999999 999999887 6799999999 9999999999999999999999999
Q ss_pred ccCCCCC
Q 013061 399 GRNPGNK 405 (450)
Q Consensus 399 ~~~~~~~ 405 (450)
++++...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpd_A 86 AKPVDKD 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9986643
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.2e-17 Score=126.99 Aligned_cols=84 Identities=29% Similarity=0.549 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-------CcEEEEEeecCHHHHHHHHHHh-cCCeeCCeE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANSRKDAEVALQKL-QGTAIGKQT 393 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-------~g~afV~F~~~~~~A~~A~~~l-~g~~~~g~~ 393 (450)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.| |+..|.|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT-KQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESS-HHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECC-HHHHHHHHHHhccCCeECCCE
Confidence 34566789999999999999999999999999999999876 6999999999 99999999999 999999999
Q ss_pred EEEEeccCCCCCC
Q 013061 394 VRLSWGRNPGNKQ 406 (450)
Q Consensus 394 l~v~~~~~~~~~~ 406 (450)
|+|.|++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 124
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=8.1e-17 Score=120.36 Aligned_cols=81 Identities=37% Similarity=0.705 Sum_probs=77.4
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
.+|||+|||.++++++|+++|+ .||.|.++.++++..++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999995 999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 013061 289 KK 290 (450)
Q Consensus 289 ~~ 290 (450)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 125
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=126.20 Aligned_cols=81 Identities=30% Similarity=0.565 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEE-EeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSV-KIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v-~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
...++|||+|||.++++++|+++|+.||.|.+| .|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS-FDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSS-HHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECC-HHHHHHHHHHcCCCEECCEEEEEE
Confidence 346899999999999999999999999999999 88775 6899999999 999999999999999999999999
Q ss_pred eccCCCCCC
Q 013061 398 WGRNPGNKQ 406 (450)
Q Consensus 398 ~~~~~~~~~ 406 (450)
|++++..+.
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 999876543
No 126
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=128.34 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999988 5577888
Q ss_pred ccccc
Q 013061 192 NWATF 196 (450)
Q Consensus 192 ~~~~~ 196 (450)
.++..
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 77653
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.3e-17 Score=133.10 Aligned_cols=106 Identities=12% Similarity=0.187 Sum_probs=90.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
+....++|||+|||+++|+++|+++|+.||.|.+|.++.+. .++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 78 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLV 78 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 34577899999999999999999999999999999999764 5689999999999999999999999999 567888
Q ss_pred eccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCC
Q 013061 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235 (450)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~ 235 (450)
|.++...... .+++...++++|.++|+ .||.
T Consensus 79 v~~a~~~~~~-------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 79 VLYYNANRAF-------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp EEECCHHHHT-------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EEEecCChhh-------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 8887643221 46777888999999995 7774
No 128
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=122.47 Aligned_cols=83 Identities=35% Similarity=0.675 Sum_probs=76.5
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
.+.++|||+|||.++++++|+++|+ .||.|.++.++++..++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3567999999999999999999995 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013061 286 ATPK 289 (450)
Q Consensus 286 ~~~~ 289 (450)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9765
No 129
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=124.61 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HhccccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLR----EPFSQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
....++|||+|||+++++++|+ ++|+.||.|.+|+|+.+ +++|||+|.+ .++|.+|++.|||..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~-~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMEN-LQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESS-HHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECC-HHHHHHHHHHhCCCEECCeEEEE
Confidence 3456899999999999999999 99999999999999876 7899999999 99999999999999999999999
Q ss_pred EeccCCCCC
Q 013061 397 SWGRNPGNK 405 (450)
Q Consensus 397 ~~~~~~~~~ 405 (450)
+|++++...
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=127.67 Aligned_cols=81 Identities=30% Similarity=0.642 Sum_probs=76.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
....++|||+|||..+++++|+++|+.||.|.+|.|..++++|||+|.+ .++|.+|+..||+..|.|+.|+|.|+++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-HESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-HHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 4457899999999999999999999999999999999999999999999 999999999999999999999999999876
Q ss_pred CC
Q 013061 404 NK 405 (450)
Q Consensus 404 ~~ 405 (450)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 131
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=126.79 Aligned_cols=82 Identities=18% Similarity=0.452 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 345778999999999999999999999999999999999986 99999999999999999999999999998 467788
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
|.+++
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 87764
No 132
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=127.33 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|.|++|+. ++++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~ 82 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLL 82 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999987 9999999999999999999998 899888 456777
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
|.|+.
T Consensus 83 V~~~~ 87 (103)
T 1s79_A 83 ILFKD 87 (103)
T ss_dssp EEEHH
T ss_pred EEEch
Confidence 76654
No 133
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.8e-17 Score=133.43 Aligned_cols=83 Identities=23% Similarity=0.525 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
......++|||+|||+.+++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET-YKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESS-HHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHhCCCeeCCeEEE
Confidence 34455789999999999999999999999999999999865 7899999999 9999999999999999999999
Q ss_pred EEeccCCCCC
Q 013061 396 LSWGRNPGNK 405 (450)
Q Consensus 396 v~~~~~~~~~ 405 (450)
|+|+++....
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999976644
No 134
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.8e-17 Score=126.29 Aligned_cols=84 Identities=27% Similarity=0.491 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
......++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS-EEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESS-HHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECC-HHHHHHHHHHhCCCeECCeEEE
Confidence 34556789999999999999999999999999999999874 4799999999 9999999999999999999999
Q ss_pred EEeccCCCCCC
Q 013061 396 LSWGRNPGNKQ 406 (450)
Q Consensus 396 v~~~~~~~~~~ 406 (450)
|.|++++....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99999876543
No 135
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.6e-17 Score=125.29 Aligned_cols=86 Identities=22% Similarity=0.414 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 110 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3556789999999999999999999999999999999999864 4899999999999999999999999998 56788
Q ss_pred eeccccccCC
Q 013061 190 RLNWATFSGS 199 (450)
Q Consensus 190 ~~~~~~~~~~ 199 (450)
+|.++.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 8888876543
No 136
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=8.7e-17 Score=126.02 Aligned_cols=83 Identities=27% Similarity=0.528 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCC---eEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGK---QTV 394 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g---~~l 394 (450)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSS-HTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESS-HHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCC-HHHHHHHHHHHcCCccCCCCCccE
Confidence 3456789999999999999999999999999999999876 6899999999 999999999999999998 999
Q ss_pred EEEeccCCCCCC
Q 013061 395 RLSWGRNPGNKQ 406 (450)
Q Consensus 395 ~v~~~~~~~~~~ 406 (450)
+|.|++++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999999877554
No 137
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=124.06 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=74.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++ |++..|.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS-HHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC-HHHHHHHHH-hCCCEECCeEEEE
Confidence 3456789999999999999999999999999999999864 6899999999 999999999 9999999999999
Q ss_pred EeccCCCCCC
Q 013061 397 SWGRNPGNKQ 406 (450)
Q Consensus 397 ~~~~~~~~~~ 406 (450)
.|++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999876544
No 138
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=123.53 Aligned_cols=86 Identities=19% Similarity=0.408 Sum_probs=80.1
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++|+ .||.|.++.++.+. +++++|+|||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999995 99999999999997 8999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013061 284 DVATPKKA 291 (450)
Q Consensus 284 ~~~~~~~~ 291 (450)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99988754
No 139
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=138.49 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC--CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4568999999999999999999999999 999999999999999999999999999999999999999999 567788
Q ss_pred eccccc
Q 013061 191 LNWATF 196 (450)
Q Consensus 191 ~~~~~~ 196 (450)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 877753
No 140
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=129.85 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCce--------EEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
.....++|||+|||+++|+++|+++|+.||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 446789999999999999999999999999999 699999998999999999999999999999999999998
Q ss_pred CCCCCcceeccccccCC
Q 013061 183 PNTDQPFRLNWATFSGS 199 (450)
Q Consensus 183 ~~~~~~i~~~~~~~~~~ 199 (450)
.++.|+|.++.....
T Consensus 91 --~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPP 105 (113)
T ss_dssp --TTEECEEECSSCCCC
T ss_pred --CCCEEEEEECCCCCC
Confidence 567888888875543
No 141
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=128.46 Aligned_cols=80 Identities=21% Similarity=0.504 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
...++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+ .++|.+|++.|||..|.|+.|+|+|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~-~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFEN-PADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSS-HHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC-HHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999875 4999999999 99999999999999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 986643
No 142
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.5e-17 Score=125.59 Aligned_cols=89 Identities=26% Similarity=0.439 Sum_probs=82.7
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....+.++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3455678999999999999999999995 999999999999988999999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 013061 283 IDVATPKKAS 292 (450)
Q Consensus 283 v~~~~~~~~~ 292 (450)
|.++.++...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999887553
No 143
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-17 Score=126.15 Aligned_cols=85 Identities=27% Similarity=0.537 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEE
Confidence 456789999999999999999999999999999999999864 3689999999999999999999999998 568899
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.|+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 988876543
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=122.25 Aligned_cols=77 Identities=35% Similarity=0.700 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHh-cCCeeCCeEEEEEecc
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL-QGTAIGKQTVRLSWGR 400 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~ 400 (450)
.....++|||+|||.++++++|+++|+.||.|.+|.+.+++++|||+|.+ .++|.+|++.| ++..+.|+.|+|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~-~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT-RQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESS-HHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECC-HHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999999999999999999 99999999999 9999999999999986
No 145
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=122.84 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=79.7
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....++++|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456678999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred EeecCC
Q 013061 283 IDVATP 288 (450)
Q Consensus 283 v~~~~~ 288 (450)
|.+++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 146
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=7.9e-17 Score=124.00 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=79.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
++++|||+|||.++++++|+++|+ .||.|.++.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 467999999999999999999995 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013061 287 TPKKA 291 (450)
Q Consensus 287 ~~~~~ 291 (450)
.++..
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 88754
No 147
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=124.44 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=81.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..+.++|||+|||.++++++|+++|+ .||.|.+|.++++..++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999995 99999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013061 285 VATPKKAS 292 (450)
Q Consensus 285 ~~~~~~~~ 292 (450)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99987654
No 148
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=124.02 Aligned_cols=81 Identities=28% Similarity=0.515 Sum_probs=73.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
.....++|||+|||+++++++|+++|+.|| |.+|.|+.+ +++|||+|.+ .++|.+|+ .||+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFED-LDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESS-HHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECC-HHHHHHHH-hcCCCEeCCcEEE
Confidence 345678999999999999999999999999 999999754 5799999999 99999999 8999999999999
Q ss_pred EEeccCCCCCC
Q 013061 396 LSWGRNPGNKQ 406 (450)
Q Consensus 396 v~~~~~~~~~~ 406 (450)
|.|++++..+.
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 149
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=1.2e-16 Score=122.03 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
..+.++|||+|||+++++++|+++|+.||.|.+|+++++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 457889999999999999999999999999999999984 689999999999999999999999999998 4577888
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 777644
No 150
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=3.7e-17 Score=129.32 Aligned_cols=84 Identities=19% Similarity=0.397 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999998 5678888
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 888654
No 151
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=121.68 Aligned_cols=79 Identities=22% Similarity=0.451 Sum_probs=73.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
....++|||+|||.++++++|+++|+.||.|.+|.+.+ ++|||+|.+ .++|.+|++.||+..|.|+.|+|+|+++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEK-EADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESC-HHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECC-HHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 45678999999999999999999999999999999985 599999999 999999999999999999999999999875
Q ss_pred CC
Q 013061 404 NK 405 (450)
Q Consensus 404 ~~ 405 (450)
.+
T Consensus 83 ~~ 84 (90)
T 2dnp_A 83 KK 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 152
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=125.77 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=75.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN-IDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSS-HHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC-HHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999874 5799999999 99999999999999999999999
Q ss_pred EeccCCCCC
Q 013061 397 SWGRNPGNK 405 (450)
Q Consensus 397 ~~~~~~~~~ 405 (450)
+|++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999987644
No 153
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=126.60 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 34568899999999999999999999999999999999997 599999999999999999999999999999 467788
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 8877643
No 154
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-16 Score=124.47 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ-SIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS-HHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC-HHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3455789999999999999999999999999999999875 6899999999 999999999999999999999999
Q ss_pred eccCCCCC
Q 013061 398 WGRNPGNK 405 (450)
Q Consensus 398 ~~~~~~~~ 405 (450)
|++....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99875544
No 155
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=3.9e-17 Score=123.25 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999995 466666 556666
Q ss_pred ecc
Q 013061 191 LNW 193 (450)
Q Consensus 191 ~~~ 193 (450)
|.+
T Consensus 84 v~~ 86 (87)
T 3s7r_A 84 PKK 86 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 156
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=124.40 Aligned_cols=87 Identities=29% Similarity=0.663 Sum_probs=81.2
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....+.++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455678999999999999999999995 999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 013061 283 IDVATPKK 290 (450)
Q Consensus 283 v~~~~~~~ 290 (450)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998763
No 157
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=125.70 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
...++++|||+|||+ ++|+++|+++|++||.|.+|+|++++ +||||+|.+.++|.+|++.|++......+++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445789999999999 99999999999999999999998764 69999999999999999999976533378899
Q ss_pred eecccccc
Q 013061 190 RLNWATFS 197 (450)
Q Consensus 190 ~~~~~~~~ 197 (450)
+|.++...
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99988744
No 158
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9e-17 Score=124.22 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC---------CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEE
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---------GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVR 395 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~---------~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~ 395 (450)
.+.++|||+|||+++++++|+++|+.||.|.+|.|.. .+++|||+|.+ .++|.+|+..||+..|.|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKK-PEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESS-HHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECC-HHHHHHHHHHhCCCeeCCeEEE
Confidence 3568999999999999999999999999999999874 25799999999 9999999999999999999999
Q ss_pred EEeccCCCCCC
Q 013061 396 LSWGRNPGNKQ 406 (450)
Q Consensus 396 v~~~~~~~~~~ 406 (450)
|.|++++....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 159
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=128.69 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 56788888
Q ss_pred ccccc
Q 013061 193 WATFS 197 (450)
Q Consensus 193 ~~~~~ 197 (450)
++...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 87644
No 160
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-16 Score=125.31 Aligned_cols=85 Identities=25% Similarity=0.494 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC------
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN------ 184 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~------ 184 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.||+..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999998854
Q ss_pred CCCcceeccccc
Q 013061 185 TDQPFRLNWATF 196 (450)
Q Consensus 185 ~~~~i~~~~~~~ 196 (450)
..+++++.|+.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 356677777663
No 161
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=124.49 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++......+++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4467889999999999999999999999999999998875 5899999999999999999886443223678999
Q ss_pred eccccccCCC
Q 013061 191 LNWATFSGSD 200 (450)
Q Consensus 191 ~~~~~~~~~~ 200 (450)
|.++......
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9998755433
No 162
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.5e-17 Score=136.25 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=76.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEE
Q 013061 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFV 332 (450)
Q Consensus 253 ~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 332 (450)
+.|++|.+...+..|+..+++....++. .+.+.. ........++|||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~--------------------------------~~~~~~~~~~l~V 52 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR--------------------------------PPPDVEGMTSLKV 52 (135)
T ss_dssp ------------------------------CCSCC--------------------------------SCSSGGGCCCEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCC--------------------------------CCCCCCCCCEEEE
Confidence 5788888888888998888775544332 111111 1222345689999
Q ss_pred ecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 013061 333 GALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 333 ~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 406 (450)
+|||+++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+|+++.....
T Consensus 53 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~-~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 53 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD-KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC-HHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999999999999999999999999764 5799999999 999999999999999999999999999866543
No 163
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=9.3e-17 Score=120.64 Aligned_cols=81 Identities=25% Similarity=0.512 Sum_probs=77.0
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
.+.++|||+|||.++++++|+++|+ .||.|.++.++++..++.++|+|||+|.+.++|.+|++.||+..+.|+.|+|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999995 999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 013061 286 AT 287 (450)
Q Consensus 286 ~~ 287 (450)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 164
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=125.10 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=80.4
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...++++|||+|||.++++++|+++|+ .||.|.+|.+..+..++.++|+|||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 345678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 013061 284 DVATPKK 290 (450)
Q Consensus 284 ~~~~~~~ 290 (450)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9997754
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=1.6e-17 Score=148.69 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccC--ceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFG--EILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G--~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
..++|||+||++++|+++|+++|+.|| .|++|+|+.+ ++||||+|.+ .++|.+||+.||+..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~-~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS-EASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESC-TTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHcCCCeECCEEeEEE
Confidence 567999999999999999999999999 9999999865 5899999999 999999999999999999999999
Q ss_pred eccC
Q 013061 398 WGRN 401 (450)
Q Consensus 398 ~~~~ 401 (450)
|+++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9863
No 166
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5e-17 Score=126.42 Aligned_cols=77 Identities=26% Similarity=0.522 Sum_probs=73.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
...++|||+|||.++++++|+++|+.||.|.+|++.+++++|||+|.+ .++|.+|+..||+..|+|+.|+|+|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDT-HEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSS-HHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECC-HHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 446899999999999999999999999999999999999999999999 99999999999999999999999999863
No 167
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=3.2e-17 Score=124.55 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=72.3
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
.+|||+|||.++|+++|+++|+ .|| .|.++.++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999995 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013061 287 TPKKA 291 (450)
Q Consensus 287 ~~~~~ 291 (450)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87654
No 168
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=124.81 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||. ++|+|+.|+ +++++|||||+|.+.++|.+|| .+++..+ .++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEEE
Confidence 456789999999999999999999999995 599999998 8999999999999999999999 4799888 4567777
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 666543
No 169
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=124.82 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCc-eEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcC-CeeCCeEEEEEeccC
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGE-ILSVKIPVGKGCGFVQFANSRKDAEVALQKLQG-TAIGKQTVRLSWGRN 401 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~-v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g-~~~~g~~l~v~~~~~ 401 (450)
....++|||+|||.++++++|+++|+.||. |..+.+ ..+++|||+|.+ .++|.+|++.||+ ..|+|+.|+|+|+++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~-~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPD-QNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSC-HHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECC-HHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 345689999999999999999999999999 555555 468999999999 9999999999999 999999999999998
Q ss_pred CCCC
Q 013061 402 PGNK 405 (450)
Q Consensus 402 ~~~~ 405 (450)
+..+
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7544
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=3.2e-17 Score=120.01 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=69.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
+|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ +++..+ .++.+++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999997 899998 4566776653
No 171
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.2e-17 Score=126.93 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999999998 55777776
Q ss_pred ccc
Q 013061 193 WAT 195 (450)
Q Consensus 193 ~~~ 195 (450)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 654
No 172
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=123.68 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++ ++..+ .++.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999997 35555 567888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 888875533
No 173
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=8.3e-17 Score=136.97 Aligned_cols=138 Identities=19% Similarity=0.375 Sum_probs=74.5
Q ss_pred EEeCCHHHHHHHHHHhCCceec--CccEEEeecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEe
Q 013061 256 VRFGDENERSRAMTEMNGVYCS--SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVG 333 (450)
Q Consensus 256 V~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 333 (450)
.+|.+.++|..|+..+++.... ++.....+............ . .................++|||+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~---------~---~s~~~~~~~~~~~~~~~~~l~V~ 78 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERV---------R---NEDDDELEPGPQRSVEGWILFVT 78 (165)
T ss_dssp -------------------------------------------------------------------CCCCC-CEEEEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCcccc---------c---cCCCCCCCCCCCCCCCCCEEEEe
Confidence 7899999999999988876553 44444444221110000000 0 00000011122334567899999
Q ss_pred cCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCCC
Q 013061 334 ALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 406 (450)
Q Consensus 334 nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 406 (450)
|||+.+++++|+++|+.||.|..|.|+.+ +++|||+|.+ .++|.+|+..|||..|.|+.|+|.|+++...+.
T Consensus 79 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 79 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999999999999865 5899999999 999999999999999999999999999766443
No 174
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=124.93 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=73.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHH---HhccccCceEEEEeeCCC---------cEEEEEeecCHHHHHHHHHHhcCCeeCC
Q 013061 324 ESNNATIFVGALDSDVSDEDLR---EPFSQFGEILSVKIPVGK---------GCGFVQFANSRKDAEVALQKLQGTAIGK 391 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~---~~F~~~G~v~~v~i~~~~---------g~afV~F~~~~~~A~~A~~~l~g~~~~g 391 (450)
....++|||+|||+++++++|+ ++|++||.|.+|.|.+++ ++|||+|.+ .++|.+|++.||+..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~-~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR-SEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESS-HHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECc-HHHHHHHHHHhCCCEECC
Confidence 3457899999999999999999 999999999999998653 699999999 999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 013061 392 QTVRLSWGRNPGN 404 (450)
Q Consensus 392 ~~l~v~~~~~~~~ 404 (450)
+.|+|+|++++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999998763
No 175
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.4e-17 Score=123.62 Aligned_cols=86 Identities=31% Similarity=0.660 Sum_probs=80.7
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEE-EEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
.+.++|||+|||.++++++|+++|+ .||.|..+ .+++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999995 99999999 999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013061 285 VATPKKAS 292 (450)
Q Consensus 285 ~~~~~~~~ 292 (450)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99887654
No 176
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=126.62 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.|++......+++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4567889999999999999999999999999999999876 5899999999999999999988542222678899
Q ss_pred eccccccCCC
Q 013061 191 LNWATFSGSD 200 (450)
Q Consensus 191 ~~~~~~~~~~ 200 (450)
|.++......
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9988755443
No 177
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=125.17 Aligned_cols=88 Identities=24% Similarity=0.406 Sum_probs=81.8
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++|+ .||.|..|.++.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 445678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 013061 284 DVATPKKAS 292 (450)
Q Consensus 284 ~~~~~~~~~ 292 (450)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876543
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-16 Score=119.75 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=74.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
.....++|||+|| ++++++|+++|+.||.|.+|.|...+++|||+|.+ .++|.+|+..||+..|.|+.|+|.|++++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~-~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEK-MESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECC-HHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456789999996 89999999999999999999999999999999999 99999999999999999999999999987
Q ss_pred CCCC
Q 013061 403 GNKQ 406 (450)
Q Consensus 403 ~~~~ 406 (450)
....
T Consensus 88 ~~~~ 91 (97)
T 1x5p_A 88 PMLD 91 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 179
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=121.89 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=78.4
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 274 (450)
......++|||+|||.++++++|+++|+ .||.|.. +.++.++.+++++|+|||+|.+.++|.+|++.|++.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445678999999999999999999995 9999999 999999999999999999999999999999999999
Q ss_pred eecCccEEEeecC
Q 013061 275 YCSSRPMRIDVAT 287 (450)
Q Consensus 275 ~~~g~~i~v~~~~ 287 (450)
.+.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 180
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.1e-16 Score=129.87 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 567888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 88887543
No 181
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=123.47 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...++++|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.|++..+...+++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3467899999999999999999999999999999999864 4799999999999999999999987544678999
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.+++..
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9888643
No 182
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=9.6e-17 Score=126.23 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 34678899999999999999999999999999999999998 899999999999999999999999999998 567777
Q ss_pred ecccc
Q 013061 191 LNWAT 195 (450)
Q Consensus 191 ~~~~~ 195 (450)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77653
No 183
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=1.2e-16 Score=129.62 Aligned_cols=87 Identities=25% Similarity=0.443 Sum_probs=81.3
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....++++|||+|||.++++++|+++|+ .||.|..|.+++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 013061 283 IDVATPKK 290 (450)
Q Consensus 283 v~~~~~~~ 290 (450)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998765
No 184
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=6.9e-17 Score=122.49 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
..++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .|++..+ .++.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4579999999999999999999999999999999999989999999999999999999999 8999998 567888887
Q ss_pred ccc
Q 013061 194 ATF 196 (450)
Q Consensus 194 ~~~ 196 (450)
+..
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 185
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=125.07 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceE--------EEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCC
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEIL--------SVKIPVG------KGCGFVQFANSRKDAEVALQKLQGT 387 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~--------~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~ 387 (450)
......++|||+|||+++++++|+++|+.||.|. .|+|..+ +++|||+|.+ .++|.+|++.||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED-PPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSS-HHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECC-HHHHHHHHHHcCCC
Confidence 3455678999999999999999999999999998 6888765 5899999999 99999999999999
Q ss_pred eeCCeEEEEEeccCCCCC
Q 013061 388 AIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 388 ~~~g~~l~v~~~~~~~~~ 405 (450)
.|.|+.|+|.|++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999987654
No 186
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=124.99 Aligned_cols=88 Identities=18% Similarity=0.458 Sum_probs=82.0
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC------Cceec
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN------GVYCS 277 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~------~~~~~ 277 (450)
...+.++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|++.|+ +..|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445678999999999999999999995 99999999999999999999999999999999999999999 99999
Q ss_pred CccEEEeecCCCCCC
Q 013061 278 SRPMRIDVATPKKAS 292 (450)
Q Consensus 278 g~~i~v~~~~~~~~~ 292 (450)
|+.|+|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887554
No 187
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.7e-17 Score=124.75 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=72.3
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 324 ESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 324 ~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
..+.++|||+|||+ .+++++|+++|+.||.|.+|.+. +++|||+|.+ .++|.+|+..||+..+.|+.|+|+|++++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDN-PQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESC-HHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECC-HHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45678999999998 99999999999999999999997 7899999999 99999999999999999999999999886
Q ss_pred CCCC
Q 013061 403 GNKQ 406 (450)
Q Consensus 403 ~~~~ 406 (450)
....
T Consensus 84 ~~~~ 87 (96)
T 2kvi_A 84 ARPQ 87 (96)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5443
No 188
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=121.40 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=77.9
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++| +.||.|.++.++.++.++.++|+|||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999 59999999999999988999999999999999999999999999999999999
Q ss_pred eecC
Q 013061 284 DVAT 287 (450)
Q Consensus 284 ~~~~ 287 (450)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 189
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=124.22 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceE-EEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+++++|||||+|.+.++|.+|++. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i 86 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYI 86 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEE
Confidence 3456789999999999999999999999999988 888888 6899999999999999999999987 88888 45677
Q ss_pred eeccccc
Q 013061 190 RLNWATF 196 (450)
Q Consensus 190 ~~~~~~~ 196 (450)
+|.++..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 7766653
No 190
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=3.1e-16 Score=126.78 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 34677899999999999999999999999999999999998 899999999999999999999999999988 567888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 88887543
No 191
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=128.11 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=73.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
..++|||+|||+++++++|+++|++||.|.+|.|++++++|||+|.+ .++|.+|+..|||..|.|+.|+|+|++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLE-PLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESC-HHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCC-HHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 46799999999999999999999999999999999999999999999 999999999999999999999999998643
No 192
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=4.5e-17 Score=128.30 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+ +..+ .++.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999875 4666 567888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 8887654
No 193
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=119.75 Aligned_cols=78 Identities=29% Similarity=0.541 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC-------CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~-------~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
.+++|||+|||.++++++|+++|+.||.|.+|.+.. .+++|||+|.+ .++|.+|++.|||..|+|+.|+|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFEN-PDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESS-HHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEec-HHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457999999999999999999999999999999865 46899999999 9999999999999999999999999
Q ss_pred ccCCCC
Q 013061 399 GRNPGN 404 (450)
Q Consensus 399 ~~~~~~ 404 (450)
++++..
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987653
No 194
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=123.80 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+|..+ ++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 4567889999999999999999999999999999999654 45889999999999999999999999988 567888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 88887543
No 195
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=3.4e-16 Score=123.68 Aligned_cols=79 Identities=28% Similarity=0.553 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCC
Q 013061 324 ESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNP 402 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 402 (450)
....++|||+|||+. +++++|+++|+.||.|.+|.| .+++|||+|.+ .++|.+|++.||+..|+|+.|+|+|++++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSN-ERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSS-SHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECC-HHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345689999999999 999999999999999999999 58999999999 99999999999999999999999999865
Q ss_pred CCC
Q 013061 403 GNK 405 (450)
Q Consensus 403 ~~~ 405 (450)
...
T Consensus 101 ~~~ 103 (110)
T 1wf1_A 101 KPD 103 (110)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 196
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=126.17 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecC-CCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.....++|||+|||+++++++|+++|+.|| |.+|+|+.++ .+++++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEE
Confidence 346789999999999999999999999999 9999999998 68999999999999999999999 8999998 55777
Q ss_pred eeccccc
Q 013061 190 RLNWATF 196 (450)
Q Consensus 190 ~~~~~~~ 196 (450)
+|.++..
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 8777754
No 197
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.6e-16 Score=124.77 Aligned_cols=82 Identities=29% Similarity=0.602 Sum_probs=73.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
.......++|||+|||.++++++|+++|+.||.|.+|.+. +++|||+|.+ .++|.+|++.|||..|.|+.|+|+|++
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEE-AESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSS-HHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECC-HHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3445667899999999999999999999999999999998 8999999999 999999999999999999999999999
Q ss_pred CCCCC
Q 013061 401 NPGNK 405 (450)
Q Consensus 401 ~~~~~ 405 (450)
++..+
T Consensus 102 ~~~~r 106 (108)
T 2jvo_A 102 LPAKR 106 (108)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 87644
No 198
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.7e-17 Score=124.77 Aligned_cols=77 Identities=29% Similarity=0.508 Sum_probs=73.1
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCCC
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 405 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 405 (450)
++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+|+++...+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFED-PRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSS-HHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECC-HHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 48999999999999999999999999999999987 9999999999 99999999999999999999999999987643
No 199
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=121.71 Aligned_cols=85 Identities=24% Similarity=0.432 Sum_probs=79.6
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCee-EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCcc---
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP--- 280 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 280 (450)
...+++|||+|||.++++++|+++|+ .||.|. ++.+++++.++.++|||||+|.+.++|.+|++.||+..+.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 34678999999999999999999995 999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEeecCCCC
Q 013061 281 -MRIDVATPKK 290 (450)
Q Consensus 281 -i~v~~~~~~~ 290 (450)
|+|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999998764
No 200
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=4.7e-17 Score=129.79 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=92.1
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..++++|||+|||.++++++|+++|+ .||.|.+|.++.+ +.++|+|||+|.+.++|.+|+..||+..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999995 9999999999876 4558999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccchhhhhhhcCCCCCCCCcccCCCCCCCCCCcEEEEecCCCCCCHHHHHHhccccCc
Q 013061 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~ 353 (450)
++.+.... .+++...++++|.++|++||.
T Consensus 81 ~a~~~~~~----------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 99765331 356677789999999999875
No 201
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=124.34 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCCCcEEEE--ecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCee-----CCeEEEE
Q 013061 324 ESNNATIFV--GALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAI-----GKQTVRL 396 (450)
Q Consensus 324 ~~~~~~l~V--~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~-----~g~~l~v 396 (450)
..++++||| +||++++++++|+++|++||.|.+|.|+.++++|||+|.+ .++|.+|++.|||++| .++.|.|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~-~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRT-TEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESS-HHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 345688999 6699999999999999999999999999999999999999 9999999999999998 7899999
Q ss_pred EeccCCCCC
Q 013061 397 SWGRNPGNK 405 (450)
Q Consensus 397 ~~~~~~~~~ 405 (450)
.|++...-.
T Consensus 101 ~~a~~~p~~ 109 (114)
T 2cq2_A 101 NFVEKVQWS 109 (114)
T ss_dssp EEESCCCCS
T ss_pred EecccCccc
Confidence 999865433
No 202
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4e-17 Score=120.13 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~ 194 (450)
++|||+|||+++++++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|.+|++.++ ..+ .++.+++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999888 777 5566777654
No 203
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.2e-16 Score=121.57 Aligned_cols=86 Identities=20% Similarity=0.473 Sum_probs=79.5
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++|+ .|| |.+|.++++..+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 345678999999999999999999995 886 999999999999999999999999999999999 89999999999999
Q ss_pred eecCCCCCC
Q 013061 284 DVATPKKAS 292 (450)
Q Consensus 284 ~~~~~~~~~ 292 (450)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999887553
No 204
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=3.4e-16 Score=120.45 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEecCCC-CCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 321 SDGESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
....+..++|||+|||. ++++++|+++|+.||.|.+|.+. +++|||+|.+ .++|.+|++.|||..+.|+.|+|+|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDN-PQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESS-HHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECC-HHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34456688999999998 99999999999999999999996 7999999999 99999999999999999999999999
Q ss_pred cCCC
Q 013061 400 RNPG 403 (450)
Q Consensus 400 ~~~~ 403 (450)
+.+.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 205
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.5e-16 Score=121.50 Aligned_cols=81 Identities=28% Similarity=0.487 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
....++|||+|||.++++++|+++|+.||.|.+|.|.++ +++|||+|.+ .++|.+|++.||+..|.|+.|+|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~-~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFES-PEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESS-HHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECC-HHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345789999999999999999999999999999999863 6899999999 99999999999999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 986643
No 206
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=3.9e-16 Score=125.03 Aligned_cols=79 Identities=27% Similarity=0.540 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEE
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l 394 (450)
.......++|||+|||+++++++|+++|+.||.|.+|+|+.+ +++|||+|.+ .++|.+|++.||+..|+|+.|
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN-PDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEES-SHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECC-HHHHHHHHHHcCCCEECCEEE
Confidence 344566789999999999999999999999999999999864 6899999999 999999999999999999999
Q ss_pred EEEecc
Q 013061 395 RLSWGR 400 (450)
Q Consensus 395 ~v~~~~ 400 (450)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999986
No 207
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=120.51 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+|++ |++..+ .++.|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 34578899999999999999999999999 9999999999 689999999999999999999999 999999 557888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8877644
No 208
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=4.9e-17 Score=125.99 Aligned_cols=83 Identities=27% Similarity=0.314 Sum_probs=78.3
Q ss_pred CCCceEEECCCCC------CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecC-
Q 013061 206 CSDLSIFVGDLAP------DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS- 278 (450)
Q Consensus 206 ~~~~~l~v~nl~~------~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g- 278 (450)
..+++|||+|||. ++++++|+++|+ .||.|.+|.|++++.|++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467999999999 999999999995 99999999999999999999999999999999999999999999999
Q ss_pred ccEEEeecCCC
Q 013061 279 RPMRIDVATPK 289 (450)
Q Consensus 279 ~~i~v~~~~~~ 289 (450)
+.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999764
No 209
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.5e-16 Score=126.61 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=68.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeE-----EEEEec
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQT-----VRLSWG 399 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~-----l~v~~~ 399 (450)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||+|.+ .++|.+|++.||+..|+|+. |+|..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~-~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVR-KEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESS-HHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECC-HHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 34689999999999999999999999999999999987 999999999 99999999999999999988 778777
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+++...
T Consensus 92 ~~~~~~ 97 (115)
T 3beg_B 92 GPRSPS 97 (115)
T ss_dssp C----C
T ss_pred CCCCCC
Confidence 765433
No 210
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=2.4e-16 Score=123.77 Aligned_cols=88 Identities=17% Similarity=0.399 Sum_probs=81.3
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---cCcc
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~ 280 (450)
...+.++|||+|||.++++++|+++|+ .||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345678999999999999999999995 999999999999998999999999999999999999999999887 8999
Q ss_pred EEEeecCCCCCC
Q 013061 281 MRIDVATPKKAS 292 (450)
Q Consensus 281 i~v~~~~~~~~~ 292 (450)
|+|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999887553
No 211
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=125.06 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC-ceEEEEE-ecCCCCCcceeEEEEeccHHHHHHHHHHhc--CCCCCCCCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVI-RNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQ 187 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~~~~ 187 (450)
..+.++|||+|||+++|+++|+++|+.||. |.+|.++ .++.+++++|||||+|.+.++|.+|++.|+ +..+ .++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCC
Confidence 356789999999999999999999999998 9999998 888889999999999999999999999996 4677 567
Q ss_pred cceeccccccCC
Q 013061 188 PFRLNWATFSGS 199 (450)
Q Consensus 188 ~i~~~~~~~~~~ 199 (450)
.|+|.|+.....
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 889988876543
No 212
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=124.73 Aligned_cols=81 Identities=35% Similarity=0.565 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
.......++|||+|||.++++++|+++|+.||.|.+|.+..+ +++|||+|.+ .++|.+|++.|||..|+|+.|+|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~-~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN-SADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCC-SHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECC-HHHHHHHHHHcCCCEECCEEEEE
Confidence 344567789999999999999999999999999999999875 7899999999 99999999999999999999999
Q ss_pred EeccCC
Q 013061 397 SWGRNP 402 (450)
Q Consensus 397 ~~~~~~ 402 (450)
+|++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999875
No 213
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=2.5e-16 Score=124.49 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=80.9
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++|+ .||.|..+.++.+..++.++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999995 9999999999999889999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013061 284 DVATPKKA 291 (450)
Q Consensus 284 ~~~~~~~~ 291 (450)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987643
No 214
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=122.63 Aligned_cols=86 Identities=52% Similarity=0.913 Sum_probs=80.1
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhc-CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-ecCccEE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMR 282 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~-~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~i~ 282 (450)
..+.++|||+|||.++++++|+++|+ . ||.|.+|.++++. ++.++|||||+|.+.++|.+|++.|++.. +.|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 45678999999999999999999995 8 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeecCCCCCC
Q 013061 283 IDVATPKKAS 292 (450)
Q Consensus 283 v~~~~~~~~~ 292 (450)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999877554
No 215
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-16 Score=119.45 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=70.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
.....++|||+|||.++++++|+++|+.||.|.-+.... .+++|||+|.+ .++|.+|+..||+..|.|+.|+|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS-FEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSS-HHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECC-HHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 445679999999999999999999999999883222111 37999999999 999999999999999999999999999
Q ss_pred CCCCC
Q 013061 401 NPGNK 405 (450)
Q Consensus 401 ~~~~~ 405 (450)
++...
T Consensus 90 ~~~~~ 94 (101)
T 2fc9_A 90 PRGSP 94 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 216
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.6e-16 Score=124.63 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=71.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccC-ceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFG-EILSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
...++|||+|||+++++++|+++|+.|| .|..+.|.. .+|+|||+|.+ .++|.+|++.|||..|+|+.|+|++++.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~-~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPS-EEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESS-HHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECC-HHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3467999999999999999999999999 899999863 58999999999 9999999999999999999999999986
Q ss_pred CC
Q 013061 402 PG 403 (450)
Q Consensus 402 ~~ 403 (450)
+.
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 54
No 217
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=119.10 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=77.1
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCC-ceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
..++|||+|||.++++++|+++|+ .||.|.++.+..+..++. ++|+|||+|.+.++|.+|++.||+..+.|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467999999999999999999995 999999999999987666 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013061 286 ATPKK 290 (450)
Q Consensus 286 ~~~~~ 290 (450)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 218
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=122.02 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc
Q 013061 113 DETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~ 188 (450)
...++|||+|||+++++++|+ ++|++||.|.+|+|+.|+.+ +|||||+|.+.++|.+|++.||+..+ .++.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~ 81 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSKK 81 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCeE
Confidence 466899999999999999999 99999999999999999765 78999999999999999999999998 5688
Q ss_pred ceecccccc
Q 013061 189 FRLNWATFS 197 (450)
Q Consensus 189 i~~~~~~~~ 197 (450)
|+|.++...
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999888654
No 219
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=9.3e-17 Score=130.89 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC---ceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~ 188 (450)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.|+. |+++|||||+|.+.++|++|++ +++..+ .++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEE
Confidence 456789999999999999999999999999 89999999987 9999999999999999999998 999988 4567
Q ss_pred ceecccc
Q 013061 189 FRLNWAT 195 (450)
Q Consensus 189 i~~~~~~ 195 (450)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7776553
No 220
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=131.49 Aligned_cols=82 Identities=22% Similarity=0.446 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999999888 456777
Q ss_pred eccc
Q 013061 191 LNWA 194 (450)
Q Consensus 191 ~~~~ 194 (450)
|.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 7653
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=128.63 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCc-eEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
.....++|||+|||+++|+++|+++|+.||.| .+|+|+.|+ +++++|||||+|.+.++|.+||+. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 34577899999999999999999999999999 899999998 899999999999999999999976 88888 56778
Q ss_pred eeccccc
Q 013061 190 RLNWATF 196 (450)
Q Consensus 190 ~~~~~~~ 196 (450)
+|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8877754
No 222
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=4.1e-17 Score=124.03 Aligned_cols=79 Identities=24% Similarity=0.456 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecccc
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~ 195 (450)
++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.+ |.+|++.|++..+ .++.++|.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999999999999999999999 9999999999998 56778888776
Q ss_pred cc
Q 013061 196 FS 197 (450)
Q Consensus 196 ~~ 197 (450)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 223
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-16 Score=119.13 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++..+.+.++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998764 5799999999999999999999999954478899
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.|+...
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9888754
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2.7e-17 Score=161.12 Aligned_cols=86 Identities=22% Similarity=0.441 Sum_probs=80.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..+.++|||+|||..+|+++|.++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999999999999999995 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013061 285 VATPKKA 291 (450)
Q Consensus 285 ~~~~~~~ 291 (450)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987654
No 225
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=129.08 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|.+||+ |++..| .++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEE
Confidence 4567899999999999999999999999999997788887899999999999999999999998 999998 5567777
Q ss_pred cccc
Q 013061 192 NWAT 195 (450)
Q Consensus 192 ~~~~ 195 (450)
.++.
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7664
No 226
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.3e-16 Score=127.60 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC---ceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~ 188 (450)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..+ .++.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeE
Confidence 456789999999999999999999999998 89999999986 9999999999999999999998 899888 4567
Q ss_pred ceecccc
Q 013061 189 FRLNWAT 195 (450)
Q Consensus 189 i~~~~~~ 195 (450)
|+|.++.
T Consensus 90 i~V~~a~ 96 (118)
T 2db1_A 90 IEVFKSH 96 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 7776654
No 227
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=119.21 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=77.2
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||.++++++|+++|+ .||.|.+|.+.++.. +.++|+|||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345678999999999999999999995 999999999999976 999999999999999999999999999999999999
Q ss_pred eecCC
Q 013061 284 DVATP 288 (450)
Q Consensus 284 ~~~~~ 288 (450)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99863
No 228
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=125.50 Aligned_cols=81 Identities=12% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~ 187 (450)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCC
Confidence 3567899999999999999876 6999999999988753 578999999999999999999999999999 567
Q ss_pred cceecccccc
Q 013061 188 PFRLNWATFS 197 (450)
Q Consensus 188 ~i~~~~~~~~ 197 (450)
+|+|.|+...
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 8899888754
No 229
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=7e-16 Score=116.31 Aligned_cols=81 Identities=26% Similarity=0.453 Sum_probs=75.0
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++|+ .||.|.++.+++++.+++++|+|||+|.+.++|.+|++ +++..++|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345678999999999999999999995 99999999999999999999999999999999999996 6888999999999
Q ss_pred eec
Q 013061 284 DVA 286 (450)
Q Consensus 284 ~~~ 286 (450)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 230
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=5e-16 Score=117.71 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=76.8
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++|||+|||.++++++|+++|+ .||.|.++.+..+..++.++|+|||+|.+.++|.+|+ .|++..+.|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 357999999999999999999995 9999999999999889999999999999999999999 89999999999999999
Q ss_pred CCC
Q 013061 287 TPK 289 (450)
Q Consensus 287 ~~~ 289 (450)
.+.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 765
No 231
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-17 Score=129.03 Aligned_cols=81 Identities=20% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++++++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|+ .|++..+ .++.|+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999 9999998 56788888
Q ss_pred cccc
Q 013061 193 WATF 196 (450)
Q Consensus 193 ~~~~ 196 (450)
++..
T Consensus 100 ~a~~ 103 (114)
T 2cq4_A 100 ASQA 103 (114)
T ss_dssp EHHH
T ss_pred ecCC
Confidence 7764
No 232
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=119.14 Aligned_cols=83 Identities=29% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC---CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~---~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
......++|||+|||.++++++|+++|+.|+.|.-+.... .+++|||+|.+ .++|.+|++.||+..|.|+.|+|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNS-EEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSS-HHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECC-HHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3445678999999999999999999999885443332221 25899999999 9999999999999999999999999
Q ss_pred ccCCCCC
Q 013061 399 GRNPGNK 405 (450)
Q Consensus 399 ~~~~~~~ 405 (450)
++++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9986543
No 233
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=130.82 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCC--CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..++|||+|||+++++++|+++|+ .|| .|.+|.++.|+.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999995 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 013061 285 VATPKK 290 (450)
Q Consensus 285 ~~~~~~ 290 (450)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 997653
No 234
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=122.08 Aligned_cols=87 Identities=26% Similarity=0.399 Sum_probs=80.8
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 445678999999999999999999995 999999999999998999999999999999999999998 999999999999
Q ss_pred eecCCCCCC
Q 013061 284 DVATPKKAS 292 (450)
Q Consensus 284 ~~~~~~~~~ 292 (450)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887653
No 235
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=120.37 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=78.2
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
....++|||+|||.++++++|+++|+ .||.|..+.++.+..+++++|+|||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567999999999999999999995 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 013061 285 VATPK 289 (450)
Q Consensus 285 ~~~~~ 289 (450)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 236
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=123.43 Aligned_cols=85 Identities=34% Similarity=0.588 Sum_probs=79.9
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
+.++|||+|||.++++++|+++|+ .||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 467999999999999999999995 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013061 287 TPKKAS 292 (450)
Q Consensus 287 ~~~~~~ 292 (450)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 877543
No 237
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=8.8e-16 Score=120.69 Aligned_cols=82 Identities=32% Similarity=0.470 Sum_probs=77.2
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++++++|+++|+ .||.|.+|.++.+. ++.++|+|||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999999999999999995 99999999999998 8999999999999999999999999999999999999
Q ss_pred eecC
Q 013061 284 DVAT 287 (450)
Q Consensus 284 ~~~~ 287 (450)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9975
No 238
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=124.76 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCC---ceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCC
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~ 187 (450)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.|+. |+++|||||+|.+.++|.+|++ +++..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 4467889999999999999999999999988 89999999987 9999999999999999999998 899888 456
Q ss_pred cceecccc
Q 013061 188 PFRLNWAT 195 (450)
Q Consensus 188 ~i~~~~~~ 195 (450)
.|+|.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 67766554
No 239
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=124.79 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++|+++|+++|+.| .|.+|+|+.|+. |+++|||||+|.+.++|.+|| .+++..+. ++.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~--gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMI--QRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEE
Confidence 446799999999999999999999999 899999999975 999999999999999999999 68998884 4566665
Q ss_pred cc
Q 013061 193 WA 194 (450)
Q Consensus 193 ~~ 194 (450)
.+
T Consensus 89 ~a 90 (109)
T 2dnn_A 89 PA 90 (109)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 240
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=117.72 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=63.2
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCC
Q 013061 115 TKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (450)
Q Consensus 115 ~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 185 (450)
+++|||+|||+++ ++++|+++|++||.|.+|+++ +.+|+++|||||+|.+.++|.+|++.||+..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4799999999999 779999999999999999987 35789999999999999999999999999999543
No 241
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=120.78 Aligned_cols=83 Identities=25% Similarity=0.516 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.| .+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 45678999999999999999999999977 4789999988999999999999999999999999999998 567888
Q ss_pred eccccccC
Q 013061 191 LNWATFSG 198 (450)
Q Consensus 191 ~~~~~~~~ 198 (450)
|.++....
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 88887553
No 242
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=5e-16 Score=122.29 Aligned_cols=88 Identities=28% Similarity=0.449 Sum_probs=76.7
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
......++|||+|||.++++++|+++|+ .||.|.+|.++++..++.++|||||+|.+.++|.+|++.+ +..+.|+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 3445678999999999999999999995 9999999999999989999999999999999999999876 5899999999
Q ss_pred EeecCCCCCC
Q 013061 283 IDVATPKKAS 292 (450)
Q Consensus 283 v~~~~~~~~~ 292 (450)
|.++.++...
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887543
No 243
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=1e-15 Score=129.08 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=81.3
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+.++|||+|||.++|+++|+++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|++..|.++.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013061 284 DVATPKKA 291 (450)
Q Consensus 284 ~~~~~~~~ 291 (450)
+++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987654
No 244
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=115.72 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=76.4
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
....++|||+|||.++++++|+++|+ .| .|.++.++++ .+++++|+|||+|.+.++|.+|++ |++..|.|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34568999999999999999999995 89 9999999999 779999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 013061 285 VATPKK 290 (450)
Q Consensus 285 ~~~~~~ 290 (450)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 245
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.7e-16 Score=121.46 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC---Cc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD---QP 188 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---~~ 188 (450)
....++|||+|||+++|+++|+++|+.||.|++|+|+.+ |||||+|.+.++|.+||+.||+..+.+.. +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999886 79999999999999999999999884422 78
Q ss_pred ceeccccccCC
Q 013061 189 FRLNWATFSGS 199 (450)
Q Consensus 189 i~~~~~~~~~~ 199 (450)
|+|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 88888876543
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-17 Score=125.10 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.+ .++.++.+++++|||||+|.+.++|.+|++ |++..+ .++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEE
Confidence 346789999999999999999999999999988 777777789999999999999999999998 999999 4678888
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 887654
No 247
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=120.75 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||+|||.++|+++|+++|+ .||.|.+|.++++.. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 4568999999999999999999995 999999999999987 9999999999999999999998 899999999999998
Q ss_pred cCC
Q 013061 286 ATP 288 (450)
Q Consensus 286 ~~~ 288 (450)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 248
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.3e-16 Score=118.17 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEee--CCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~--~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
.....++|||+|||+++++++|+++|+.||.|. +.++ ..+++|||+|.+ .++|.+|++.||+..|.|+.|+|+|++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPD-SAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSS-HHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECC-HHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 445678999999999999999999999999996 5554 458999999999 999999999999999999999999999
Q ss_pred CCCC
Q 013061 401 NPGN 404 (450)
Q Consensus 401 ~~~~ 404 (450)
++..
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 249
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=3.1e-16 Score=120.42 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=75.5
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++|||+|||.++++++|+++| +.||.|..+.++.+..+++++|+|||+|.+.++|.+|++.||+..|.++.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45799999999999999999999 59999999999999889999999999999999999999999999999999999987
Q ss_pred CC
Q 013061 287 TP 288 (450)
Q Consensus 287 ~~ 288 (450)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 250
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5e-16 Score=121.35 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
..++++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|++......++.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457889999999998 99999999999999999999975 35899999999999999999987654333678899
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9888644
No 251
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7e-16 Score=128.14 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
....+|||+||++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.|+|..|.+.++.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 45567999999999999999999999999999998754 25789999999999999999999999997767899999
Q ss_pred cccccCC
Q 013061 193 WATFSGS 199 (450)
Q Consensus 193 ~~~~~~~ 199 (450)
|++....
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9986643
No 252
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=2.4e-15 Score=121.52 Aligned_cols=86 Identities=28% Similarity=0.428 Sum_probs=80.1
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
....+++|||+|||.++++++|+++|+ .||.|.+|.+..+. +++++|+|||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 445678999999999999999999995 99999999999998 8999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013061 284 DVATPKKA 291 (450)
Q Consensus 284 ~~~~~~~~ 291 (450)
+++.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987654
No 253
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.5e-16 Score=140.94 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
..++|||+|||+++|+++|+++|+.|| .|++|+|++|+.+++++|||||+|.+.++|.+||+.||+..| .++.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 677999999999999999999999999 999999999999999999999999999999999999999999 5577777
Q ss_pred cccc
Q 013061 192 NWAT 195 (450)
Q Consensus 192 ~~~~ 195 (450)
.++.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 7664
No 254
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=120.79 Aligned_cols=83 Identities=31% Similarity=0.427 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 45678999999999999999999999999966 66666 6789999999999999999999999999988 568888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 888876543
No 255
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=128.89 Aligned_cols=86 Identities=16% Similarity=0.358 Sum_probs=79.7
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE--EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc----eec
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCS 277 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~ 277 (450)
....+++|||+|||+++|+++|+++|+ .||.|.. |+|++|+.+++++|||||+|.+. +|.+|+..|++. .+.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 345678999999999999999999995 9999976 99999999999999999999999 999999999999 999
Q ss_pred CccEEEeecCCCCC
Q 013061 278 SRPMRIDVATPKKA 291 (450)
Q Consensus 278 g~~i~v~~~~~~~~ 291 (450)
|+.|+|+++.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999988654
No 256
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=117.10 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.||+..+ .++.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345678999999999999999999999999997 677654 5789999999999999999999999999 557788
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8877643
No 257
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.2e-16 Score=118.69 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQLR 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceEE
Confidence 4467889999999999999999999999999999999864 57999999999999999999999998 457888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 83 v~~a~~~ 89 (99)
T 2cpj_A 83 VRFACHS 89 (99)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 8888654
No 258
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=115.39 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
..+.++|||+|||+++++++|+++|+.||.|.+|+++ ++||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 4578999999999999999999999999999999997 46999999999999999999999988 5678888
Q ss_pred ccccccCC
Q 013061 192 NWATFSGS 199 (450)
Q Consensus 192 ~~~~~~~~ 199 (450)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 88875543
No 259
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-15 Score=117.13 Aligned_cols=87 Identities=25% Similarity=0.347 Sum_probs=79.1
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....+.++|||+|||.++++++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|.+|++ ++..|.|+.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445678999999999999999999995 99999999999999899999999999999999999998 57789999999
Q ss_pred EeecCCCCCC
Q 013061 283 IDVATPKKAS 292 (450)
Q Consensus 283 v~~~~~~~~~ 292 (450)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999887553
No 260
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=122.15 Aligned_cols=78 Identities=21% Similarity=0.429 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|+.. ++..|.|+.|+|.|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4589999999999999999999999999999999875 5899999999 9999999997 999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987654
No 261
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=8.7e-16 Score=118.41 Aligned_cols=79 Identities=27% Similarity=0.534 Sum_probs=73.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HhccccCceEEEEeeC---CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLR----EPFSQFGEILSVKIPV---GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~v~i~~---~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
..++++|||+|||.++++++|+ ++|+.||.|.+|.+.+ .+++|||+|.+ .++|.+|+..|||..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKE-VSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESS-HHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCC-HHHHHHHHHHhCCCEECCcEEEE
Confidence 3467899999999999999999 9999999999999984 47999999999 99999999999999999999999
Q ss_pred EeccCCC
Q 013061 397 SWGRNPG 403 (450)
Q Consensus 397 ~~~~~~~ 403 (450)
+|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9999865
No 262
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=6.8e-16 Score=124.27 Aligned_cols=79 Identities=18% Similarity=0.431 Sum_probs=71.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HhccccCceEEEEeeC---CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLR----EPFSQFGEILSVKIPV---GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~----~~F~~~G~v~~v~i~~---~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. .+|+|||+|.+ .++|.+|+..|||..|.|+.|+|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~-~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFAT-QESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESS-HHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECC-HHHHHHHHHHHCCCEeCCCEEEE
Confidence 3457899999999999999876 6999999999999864 47999999999 99999999999999999999999
Q ss_pred EeccCCC
Q 013061 397 SWGRNPG 403 (450)
Q Consensus 397 ~~~~~~~ 403 (450)
.|++.+.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9999765
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.7e-16 Score=116.09 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
+|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++. ++..+ .++.+++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999974 77777 445555543
No 264
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=7.7e-16 Score=112.80 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
.+.-|||+||++.+|+++|+++|. .||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356899999999999999999995 999999999864 5899999999999999999999999999999999998
Q ss_pred C
Q 013061 287 T 287 (450)
Q Consensus 287 ~ 287 (450)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 265
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=3.2e-15 Score=119.19 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=69.4
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcE-EEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEeccCCCC
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGC-GFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWGRNPGN 404 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~-afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~ 404 (450)
..|||+||++.+++++|+++|++||.|.+|.|....|+ |||+|.+ .++|..|++.|||..|.| +.|+|.|++++.-
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~-~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFES-VLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESS-HHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 34679999999999999999999999999998765686 9999999 999999999999999987 7999999998753
No 266
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=121.96 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCC
Q 013061 111 TNDETKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 184 (450)
.....++|||+|||+.+ |+++|+++|+.||.|.+|.|+ +.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 34557899999999999 789999999999999999988 36789999999999999999999999999999
Q ss_pred CCC-cceecccc
Q 013061 185 TDQ-PFRLNWAT 195 (450)
Q Consensus 185 ~~~-~i~~~~~~ 195 (450)
.++ .|+|.++.
T Consensus 87 ~g~~~l~V~~a~ 98 (105)
T 2nlw_A 87 DKQHTFRVNLFT 98 (105)
T ss_dssp STTCEEEEECSC
T ss_pred CCCceEEEEEcc
Confidence 456 78888775
No 267
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.8e-16 Score=129.62 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.|| |++|+|+.|+. ++++|||||+|.+.++|++|| .+++..+. ++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~--gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ--HRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS--SCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC--CEEEE
Confidence 345678999999999999999999999999 67999999986 999999999999999999999 78998884 45666
Q ss_pred eccccc
Q 013061 191 LNWATF 196 (450)
Q Consensus 191 ~~~~~~ 196 (450)
|..+..
T Consensus 117 V~~a~~ 122 (139)
T 2hgn_A 117 LFLNST 122 (139)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 665553
No 268
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=3.9e-16 Score=114.12 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=71.4
Q ss_pred eEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 210 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
+|||+|||.++++++|+++|+ .||.|.++.+..++.++.++|+|||+|.+.++|.+|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999995 99999999999998899999999999999999999997 9999999999999875
No 269
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.1e-15 Score=122.14 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC-CCcE-EEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEeccC
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-GKGC-GFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWGRN 401 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~-~~g~-afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~ 401 (450)
....|||+||++.+|+++|+++|++||.|.+|.+.. .+++ |||+|.+ .++|.+|++.|||..|.| +.|+|+|+++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~-~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-PVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECC-HHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 345778999999999999999999999999998875 3577 9999999 999999999999999988 9999999998
Q ss_pred CC
Q 013061 402 PG 403 (450)
Q Consensus 402 ~~ 403 (450)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 270
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=121.11 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=78.0
Q ss_pred CCCCceEEECCCCCCCCHHHHH---HHHhhcCCCeeEEEEeecCCCC---CceeEEEEEeCCHHHHHHHHHHhCCceecC
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~---~~f~~~~g~i~~v~~~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 278 (450)
....++|||+|||+++++++|+ ++|+ .||.|.+|.+.++..++ +++|||||+|.+.++|.+|++.||+..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3457799999999999999999 9995 99999999999887643 566999999999999999999999999999
Q ss_pred ccEEEeecCCCCC
Q 013061 279 RPMRIDVATPKKA 291 (450)
Q Consensus 279 ~~i~v~~~~~~~~ 291 (450)
+.|+|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988764
No 271
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=118.16 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=69.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
.....++|||+|||+++|+++|+++|+.||.| +|+|+.+ +++|||+|.+ .++|.+|++ +|+..|+++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFAT-HEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSS-SHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECC-HHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999955 8888754 5899999999 999999995 79999999999999
Q ss_pred eccCCC
Q 013061 398 WGRNPG 403 (450)
Q Consensus 398 ~~~~~~ 403 (450)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 988754
No 272
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.6e-16 Score=122.91 Aligned_cols=85 Identities=22% Similarity=0.382 Sum_probs=79.2
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||+|||.++++++|+++| ..||.|..|.++.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 446899999999999999999999 4999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCCCCC
Q 013061 286 ATPKKAS 292 (450)
Q Consensus 286 ~~~~~~~ 292 (450)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887653
No 273
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-16 Score=118.38 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=75.5
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
.++++|||+|||.++++++|+++|+ .||.|.++.++.++.++.++|||||+|.+.++|.+|++.||+..+.++.+++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4578999999999999999999995 999999999999988999999999999999999999999999999999988776
Q ss_pred cC
Q 013061 286 AT 287 (450)
Q Consensus 286 ~~ 287 (450)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 274
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=120.96 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecC-CCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
.....++|||+|||.++++++|+++|+ .|| |.++.++++. .+++++|||||+|.+.++|.+|+ .|++..|.|+.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 345678999999999999999999995 999 9999999998 58999999999999999999999 8999999999999
Q ss_pred EeecCCCC
Q 013061 283 IDVATPKK 290 (450)
Q Consensus 283 v~~~~~~~ 290 (450)
|+++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998753
No 275
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=120.98 Aligned_cols=82 Identities=22% Similarity=0.426 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCce----EEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEI----LSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v----~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
..+.++|||+|||.++++++|+++|+.||.| ..+++.. .+++|||+|.+ .++|.+|++.||+..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN-KEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSS-HHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECC-HHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4467899999999999999999999999998 5666654 36999999999 999999999999999999999999
Q ss_pred eccCCCCCC
Q 013061 398 WGRNPGNKQ 406 (450)
Q Consensus 398 ~~~~~~~~~ 406 (450)
|++++..+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876554
No 276
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=119.06 Aligned_cols=84 Identities=17% Similarity=0.453 Sum_probs=77.2
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee-------
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC------- 276 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~------- 276 (450)
.....++|||+|||.++++++|+++|+ .||.|..+.++++. ++.++|||||+|.+.++|.+|++.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344678999999999999999999995 99999999999998 899999999999999999999999999999
Q ss_pred -cCccEEEeecCCC
Q 013061 277 -SSRPMRIDVATPK 289 (450)
Q Consensus 277 -~g~~i~v~~~~~~ 289 (450)
.+++|.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999864
No 277
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=1e-15 Score=115.60 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
..++|||+|||+++++++|+++|++| .|.++++...+++|||+|.+ .++|.+|++.||+..+.|+.|+|+|++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~-~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLN-GEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSC-HHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECC-HHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999999999999999999 99999998889999999999 999999999999999999999999998654
No 278
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=123.68 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
...+.++|||+|||+++|+++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 345778999999999999999999999999985443333333788999999999999999999999999998 678888
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 888875543
No 279
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=120.32 Aligned_cols=86 Identities=20% Similarity=0.448 Sum_probs=78.0
Q ss_pred CcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013061 201 RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (450)
Q Consensus 201 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 280 (450)
........++|||+|||.++++++|+++|+ .||.|.++.+.++. +.++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334456778999999999999999999995 99999999999885 348999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 013061 281 MRIDVATPK 289 (450)
Q Consensus 281 i~v~~~~~~ 289 (450)
|+|+++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999875
No 280
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=120.74 Aligned_cols=85 Identities=15% Similarity=0.286 Sum_probs=78.3
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCC-eeEEEEe-ecCCCCCceeEEEEEeCCHHHHHHHHHHhC--CceecCccE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPM 281 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~i 281 (450)
.+.++|||+|||.++++++|+++|+ .||. |.++.++ .+..++.++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4578999999999999999999995 9998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecCCCCC
Q 013061 282 RIDVATPKKA 291 (450)
Q Consensus 282 ~v~~~~~~~~ 291 (450)
+|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999988755
No 281
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=114.51 Aligned_cols=76 Identities=22% Similarity=0.463 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHh-cCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~~~~~i 189 (450)
.....++|||+|||+++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.| ++..+ .++.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEE
Confidence 4467789999999999999999999999999999999874 579999999999999999988 88888 45778
Q ss_pred eeccc
Q 013061 190 RLNWA 194 (450)
Q Consensus 190 ~~~~~ 194 (450)
+|.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 87775
No 282
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=124.07 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCc----eEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCc
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV----VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~ 188 (450)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.|+ +|+++|||||+|.+.++|.+||+. ++..|. ++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLG--KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESS--SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeC--CeE
Confidence 467899999999999999999999999975 699999994 899999999999999999999975 887774 445
Q ss_pred ceeccc
Q 013061 189 FRLNWA 194 (450)
Q Consensus 189 i~~~~~ 194 (450)
|+|..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 555433
No 283
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=5.4e-16 Score=124.24 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCce--EEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
....++|||+|||+++|+++|+++|+.| .|+ +|+|+.|+. |+++|||||+|.+.++|.+|++. ++..+ .++.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCEEE
Confidence 3567899999999999999999999999 677 999999987 99999999999999999999974 66777 45667
Q ss_pred eecccc
Q 013061 190 RLNWAT 195 (450)
Q Consensus 190 ~~~~~~ 195 (450)
+|..+.
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 665553
No 284
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1e-15 Score=120.20 Aligned_cols=77 Identities=21% Similarity=0.425 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 96 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLE 96 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 45678999999999999999999999999999999998 57999999999999999999999998 567888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 8887654
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=122.80 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=77.3
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....+.++|||+|||.++++++|+++|+ .||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455678999999999999999999995 999999999999988999999999999999999999999999999999999
Q ss_pred Eeec
Q 013061 283 IDVA 286 (450)
Q Consensus 283 v~~~ 286 (450)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 286
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-16 Score=114.00 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=72.4
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
++|||+|||.++++++|+++|+ .||.|.++.+.+++.+++++|+|||+|.+.++|.+|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999995 99999999999998899999999999999999999999999 9999999999986
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=1.4e-15 Score=122.98 Aligned_cols=78 Identities=24% Similarity=0.458 Sum_probs=71.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|+ .||+..|.|+.|+|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESS-HHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECC-HHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999999999999764 6899999999 99999999 79999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
++...+
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 976543
No 288
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=112.42 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=66.9
Q ss_pred CCcE-EEEecCCCCCCHHH----HHHhcccc-CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 326 NNAT-IFVGALDSDVSDED----LREPFSQF-GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 326 ~~~~-l~V~nlp~~~t~~~----L~~~F~~~-G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
++.+ |||+|||+.+++++ |+++|++| |.|.+|. .|+|||+|.+ .++|.+|++.|+|..|.||.|+|+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~-~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFIN-QDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESS-HHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECC-HHHHHHHHHHhcCCccCCceEEEEec
Confidence 3444 99999999999988 55899999 5999982 3999999999 99999999999999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+.++.-
T Consensus 82 ~~~sd~ 87 (96)
T 2diu_A 82 PKNREL 87 (96)
T ss_dssp CCSCCC
T ss_pred CCCcce
Confidence 987654
No 289
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=4.8e-16 Score=121.91 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccC-CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
....++|||+|||+++++++|+++|+.|| .|..|.|..+ +++|||||+|.+.++|++|++.||+..+ .++.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~ 98 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVIT 98 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 44678999999999999999999999999 8999988643 4789999999999999999999999999 567888
Q ss_pred eccccc
Q 013061 191 LNWATF 196 (450)
Q Consensus 191 ~~~~~~ 196 (450)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 887753
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.3e-16 Score=122.28 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=77.6
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||+|||.++++++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3457999999999999999999995 9999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCCC
Q 013061 286 ATPKK 290 (450)
Q Consensus 286 ~~~~~ 290 (450)
+.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87653
No 291
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-17 Score=130.48 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEE--------EEeeCC------CcEEEEEeecCHHHHHHHHHHhcCCeeC
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILS--------VKIPVG------KGCGFVQFANSRKDAEVALQKLQGTAIG 390 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~--------v~i~~~------~g~afV~F~~~~~~A~~A~~~l~g~~~~ 390 (450)
.+.++|||+|||.++++++|+++|+.||.|.+ |.|+.+ +++|||+|.+ .++|.+|++.||+..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD-PPSAKAAIDWFDGKEFS 83 (116)
Confidence 45689999999999999999999999999998 777754 5899999999 99999999999999999
Q ss_pred CeEEEEEeccCCCCC
Q 013061 391 KQTVRLSWGRNPGNK 405 (450)
Q Consensus 391 g~~l~v~~~~~~~~~ 405 (450)
|+.|+|.|++++..+
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999986543
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-15 Score=118.24 Aligned_cols=75 Identities=19% Similarity=0.383 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++++++|+++|+.||.|.+|++++ ++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 3568999999999999999999999999999999983 568999999999999999999999998 56788888
Q ss_pred ccc
Q 013061 193 WAT 195 (450)
Q Consensus 193 ~~~ 195 (450)
|++
T Consensus 97 ~a~ 99 (101)
T 2la4_A 97 WGK 99 (101)
T ss_dssp BCC
T ss_pred ecc
Confidence 875
No 293
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=2.5e-15 Score=121.49 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=78.3
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
...++|||+|||.++++++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3467999999999999999999995 9999999999999889999999999999999999999 7999999999999999
Q ss_pred cCCCCC
Q 013061 286 ATPKKA 291 (450)
Q Consensus 286 ~~~~~~ 291 (450)
+.+...
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 986543
No 294
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.5e-15 Score=126.11 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=70.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC--CcEEEEEeecCHHHHHHHHHHhcCCeeCC--eEEEEEeccC
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--KGCGFVQFANSRKDAEVALQKLQGTAIGK--QTVRLSWGRN 401 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--~g~afV~F~~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~ 401 (450)
...+|||+||++.+|+++|+++|++||.|++|.|... +++|||+|.+ .++|.+|++.|||+.|.| +.|+|+|+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d-~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-PVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESC-HHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECC-HHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3567899999999999999999999999999998643 5799999999 999999999999999965 9999999998
Q ss_pred CC
Q 013061 402 PG 403 (450)
Q Consensus 402 ~~ 403 (450)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 295
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=117.12 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
....++|||+|||+++|+++|+++| +.||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. ++..+.++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFF-SGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHT-TTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456899999999999999999999 49999987 888888 7899999999999999999999986 999999999999
Q ss_pred eecCCCCC
Q 013061 284 DVATPKKA 291 (450)
Q Consensus 284 ~~~~~~~~ 291 (450)
.++..+..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876643
No 296
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.5e-15 Score=113.60 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCc-EEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG-CGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g-~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
...++|||+|||+++++++|+++|+.||.|.+|.+.+..+ +|||+|.+ .++|.+|+. ||+..|+|+.|+|.++.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~-~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGD-VGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESS-HHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECC-HHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 3467999999999999999999999999999984333222 99999999 999999999 99999999999999987655
Q ss_pred CC
Q 013061 404 NK 405 (450)
Q Consensus 404 ~~ 405 (450)
..
T Consensus 84 ~~ 85 (94)
T 2e5g_A 84 FQ 85 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 297
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3e-16 Score=119.18 Aligned_cols=81 Identities=33% Similarity=0.580 Sum_probs=73.5
Q ss_pred ceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 209 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
++|||+|||.++++++|+++|+ .||.|.++.+.++..++.++|+|||+|.+.+ |.+|+..||+..+.|+.|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4799999999999999999995 9999999999999989999999999999999 9999999999999999999999987
Q ss_pred CCC
Q 013061 289 KKA 291 (450)
Q Consensus 289 ~~~ 291 (450)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 298
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=2.6e-15 Score=117.03 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.|+|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEE
Confidence 35678999999999999999999999999999999874 4899999999999999999999988 5678888
Q ss_pred ccccccCCC
Q 013061 192 NWATFSGSD 200 (450)
Q Consensus 192 ~~~~~~~~~ 200 (450)
.++......
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 888765443
No 299
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=114.41 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013061 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWG 399 (450)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 399 (450)
......++|||+|||..+++++|+++|+.||.|..+ ... .+++|||+|.+ .++|.+|+..||+..|.|+.|+|.|+
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKS-EADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESS-HHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECC-HHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 344567899999999999999999999999998877 222 36899999999 99999999999999999999999999
Q ss_pred cCCCCC
Q 013061 400 RNPGNK 405 (450)
Q Consensus 400 ~~~~~~ 405 (450)
+++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 886543
No 300
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=118.57 Aligned_cols=79 Identities=22% Similarity=0.482 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 94 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKCY 94 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEE
Confidence 46789999999999999999999999999999999886 57999999999999999999999988 56788998
Q ss_pred cccccCC
Q 013061 193 WATFSGS 199 (450)
Q Consensus 193 ~~~~~~~ 199 (450)
|+.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 8876543
No 301
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=115.21 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEE-eeCCC--cEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVK-IPVGK--GCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~-i~~~~--g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
....++|||+|||+++++++|+++|+.||.|.+|+ |+.++ +.|||+|.+ .++|.+|+..|||..|.|+.|+|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~-~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSS-KDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESS-HHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECC-HHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34568999999999999999999999999999994 77653 559999999 999999999999999999999999999
Q ss_pred CCC
Q 013061 401 NPG 403 (450)
Q Consensus 401 ~~~ 403 (450)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 302
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.8e-15 Score=123.29 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
....++|||+|||+++|+++|+++|+ .||. |.+|+|++|+. ++++|||||+|.+.++|.+|++ +++..|.++.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34568999999999999999999995 9999 89999999987 9999999999999999999999 99999999999
Q ss_pred EEeecCCC
Q 013061 282 RIDVATPK 289 (450)
Q Consensus 282 ~v~~~~~~ 289 (450)
+|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 303
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=5.8e-17 Score=129.44 Aligned_cols=85 Identities=19% Similarity=0.386 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceE--------EEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 183 (450)
..+.++|||+|||+++++++|+++|+.||.|.+ |+|+.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 457789999999999999999999999999999 99999988999999999999999999999999999998
Q ss_pred CCCCcceeccccccC
Q 013061 184 NTDQPFRLNWATFSG 198 (450)
Q Consensus 184 ~~~~~i~~~~~~~~~ 198 (450)
.++.|+|.++....
T Consensus 83 -~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 -SGNPIKVSFATRRA 96 (116)
Confidence 46788888876543
No 304
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=2.4e-15 Score=120.18 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=75.8
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
....++|||+|||+++|+++|+++|+ .||. |..|+|+++.. ++++|||||+|.+.++|.+||+ +++..|.++.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34567899999999999999999995 9999 89999999977 9999999999999999999998 99999999999
Q ss_pred EEeecCCC
Q 013061 282 RIDVATPK 289 (450)
Q Consensus 282 ~v~~~~~~ 289 (450)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 305
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.7e-16 Score=127.70 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=74.6
Q ss_pred eeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceeccccccCCCCcccCCCCceEEECCCCCCCCHHHHHHHHhhcCCCee
Q 013061 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (450)
Q Consensus 158 g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~ 237 (450)
++||.+|.-++.+-.++..+....- +.. .- ...............++|||+|||+++|+++|+++|+ .|| |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g-g~~--~g---~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTG-GQQ--MG---RGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CS
T ss_pred CcccccccCccccchhcccchhccC-CCC--CC---CCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-Ce
Confidence 5688888888877777655332211 110 00 0000011122334567999999999999999999994 999 77
Q ss_pred EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCCCCC
Q 013061 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (450)
Q Consensus 238 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 291 (450)
+|.|++|+. ++++|||||+|.+.++|.+|| .+++..|.++.|+|.++.+...
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999999976 999999999999999999999 7999999999999999877644
No 306
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=1.6e-15 Score=121.28 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCccee-EEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
...-+|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|.+|++.|||..+.+.++.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345578899999999999999999999999999988642 577 99999999999999999999999776689999
Q ss_pred ccccccCCC
Q 013061 192 NWATFSGSD 200 (450)
Q Consensus 192 ~~~~~~~~~ 200 (450)
.|++.....
T Consensus 101 ~~ak~~~l~ 109 (130)
T 3zzy_A 101 DFSKLTSLN 109 (130)
T ss_dssp EECSCSSCC
T ss_pred EecCCCcee
Confidence 999866433
No 307
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=119.84 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCe-eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i-~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
....++|||+|||+++|+++|+++|+ .||.| ..|.|+++. +++++|||||+|.+.++|.+||+. ++..|.++.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44678999999999999999999995 99999 899999998 899999999999999999999986 999999999999
Q ss_pred eecCCCC
Q 013061 284 DVATPKK 290 (450)
Q Consensus 284 ~~~~~~~ 290 (450)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 308
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=6.5e-15 Score=117.35 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCccee-EEEEeccHHHHHHHHHHhcCCCCCCCCCcceecc
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~~ 193 (450)
...|||+||++.+|+++|+++|++||.|.+|+|+. + .|| |||+|.+.++|.+|++.|||..|.+..+.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34578999999999999999999999999999975 2 276 9999999999999999999999977668999999
Q ss_pred ccccC
Q 013061 194 ATFSG 198 (450)
Q Consensus 194 ~~~~~ 198 (450)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 88664
No 309
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=3.1e-15 Score=128.28 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++++++|+++|+.||.|++|.|+.++ +++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999998 557888
Q ss_pred eccccc
Q 013061 191 LNWATF 196 (450)
Q Consensus 191 ~~~~~~ 196 (450)
|.++..
T Consensus 161 V~~a~~ 166 (177)
T 2f3j_A 161 IQLVAS 166 (177)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 888764
No 310
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=5.5e-16 Score=120.71 Aligned_cols=81 Identities=32% Similarity=0.535 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++ ++..+ .++.+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999997 77666 4566776
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 666543
No 311
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=117.41 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
...+|||+|||+++|+++|+++|+ .| .|.+|.|++|+. ++++|+|||+|.+.++|.+|| .+++..|.++.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 357899999999999999999995 88 899999999976 999999999999999999999 69999999999999888
Q ss_pred CCC
Q 013061 287 TPK 289 (450)
Q Consensus 287 ~~~ 289 (450)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 643
No 312
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=117.28 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=75.1
Q ss_pred CCCCceEEECCCCCCC------CHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecC
Q 013061 205 ACSDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~------t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 278 (450)
...+++|||+|||..+ ++++|+++|+ .||.|.+|.+. ..+++++|||||+|.+.++|.+|+..||+..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3456899999999999 7899999995 99999999888 3678999999999999999999999999999999
Q ss_pred c-cEEEeecCCCC
Q 013061 279 R-PMRIDVATPKK 290 (450)
Q Consensus 279 ~-~i~v~~~~~~~ 290 (450)
+ .|+|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999997653
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=114.07 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEE-EEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
....++|||+|||+++++++|+++|+.||.|.+| .++.++.++ .|||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL--ENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3457899999999999999999999999999999 488876553 399999999999999999999999 567888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 8887654
No 314
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.8e-15 Score=112.56 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCccee
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~ 191 (450)
....++|||+|||+++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++ |++..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEE
Confidence 3467899999999999999999999999999987 66666665 99999999999999999 999998 4577777
Q ss_pred cccccc
Q 013061 192 NWATFS 197 (450)
Q Consensus 192 ~~~~~~ 197 (450)
.++...
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 776544
No 315
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.8e-15 Score=113.89 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=67.8
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcc
Q 013061 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
...+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 346788999999999 99999999999999999999984 57999999999999999999999998 46778
Q ss_pred eeccccccC
Q 013061 190 RLNWATFSG 198 (450)
Q Consensus 190 ~~~~~~~~~ 198 (450)
+|.++....
T Consensus 76 ~V~~a~~~~ 84 (96)
T 2kvi_A 76 ILEVSSSNA 84 (96)
T ss_dssp CEEEEECCC
T ss_pred EEEEcCcCC
Confidence 888876543
No 316
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=112.69 Aligned_cols=77 Identities=19% Similarity=0.386 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|||+++|+++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEV--KGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3467889999999999999999999999999999999743 899999999999999999999998 567888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.++...
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 8888755
No 317
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.1e-15 Score=117.85 Aligned_cols=81 Identities=28% Similarity=0.442 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~ 187 (450)
..++++|||+|||+++++++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 4578899999999999999999 9999999999998874 467889999999999999999999999998 568
Q ss_pred cceecccccc
Q 013061 188 PFRLNWATFS 197 (450)
Q Consensus 188 ~i~~~~~~~~ 197 (450)
.++|.++...
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 8888888754
No 318
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=122.21 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=76.4
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
....++|||+|||+++|+++|+++|+ .||.|..+.++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34568999999999999999999994 99999987777777789999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 013061 285 VATPKK 290 (450)
Q Consensus 285 ~~~~~~ 290 (450)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997653
No 319
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=107.33 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhhcc-CCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 113 DETKT-IWIGDLFHWMDETF----LHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 113 ~~~~~-l~V~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
.++.+ |||+|||+++++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+ .+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~g 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FG 73 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CC
Confidence 34556 99999999999988 55899999 599988 23 8999999999999999999999999 67
Q ss_pred CcceeccccccCCCC
Q 013061 187 QPFRLNWATFSGSDR 201 (450)
Q Consensus 187 ~~i~~~~~~~~~~~~ 201 (450)
++|+|.+++..+...
T Consensus 74 r~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 74 NRIIVSFTPKNRELC 88 (96)
T ss_dssp SCCEEESSCCSCCCC
T ss_pred ceEEEEecCCCccee
Confidence 899999998665443
No 320
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=118.04 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++++++|+++|++||.|.+|.|++ +++||||+|.+.++|.+|++.||+..+ .++.|+|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 3567999999999999999999999999999998864 457999999999999999999999999 56788888
Q ss_pred ccccc
Q 013061 193 WATFS 197 (450)
Q Consensus 193 ~~~~~ 197 (450)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 88643
No 321
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-15 Score=119.07 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=65.1
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEecc----HHH----HHHHHH--HhcCCC
Q 013061 116 KTIWIGDL----FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS----RAA----AEKVLQ--SYSGSL 181 (450)
Q Consensus 116 ~~l~V~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 181 (450)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 678888
Q ss_pred CCCCCCcceec
Q 013061 182 MPNTDQPFRLN 192 (450)
Q Consensus 182 ~~~~~~~i~~~ 192 (450)
+. ++.|+|.
T Consensus 83 I~--Gr~irV~ 91 (136)
T 2j8a_A 83 IM--GFKFEVI 91 (136)
T ss_dssp ET--TEEEEEE
T ss_pred ec--CcEEEEE
Confidence 84 4555554
No 322
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=5.8e-15 Score=118.22 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
....++|||+|+ ++++++|+++|+.||.|.+|.+...+++|||+|.+ .++|.+|++.||+..|.|+.|+|.|++++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~-~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEK-MESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSS-HHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 356789999996 79999999999999999999999999999999999 999999999999999999999999999865
Q ss_pred CC
Q 013061 404 NK 405 (450)
Q Consensus 404 ~~ 405 (450)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 323
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=112.24 Aligned_cols=73 Identities=21% Similarity=0.395 Sum_probs=66.9
Q ss_pred CceEEECCCCCCC------CHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCc-c
Q 013061 208 DLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-P 280 (450)
Q Consensus 208 ~~~l~v~nl~~~~------t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~ 280 (450)
+++|||+|||.++ ++++|+++|+ .||.|.++.+. ..+++++|||||+|.+.++|.+|++.||+..+.|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 7799999995 99999999987 35789999999999999999999999999999999 8
Q ss_pred EEE
Q 013061 281 MRI 283 (450)
Q Consensus 281 i~v 283 (450)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=6.3e-15 Score=111.06 Aligned_cols=71 Identities=20% Similarity=0.453 Sum_probs=67.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhcccc----C-------ceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEE
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQF----G-------EILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l 394 (450)
..++|||+|||+++++++|+++|+.| | .|.++.+.+++++|||+|.+ .++|.+|+ .||+..|.|+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~-~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS-VDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESS-HHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCC-HHHHHHHH-hcCCCEECCeEE
Confidence 46899999999999999999999999 8 89999999999999999999 99999999 999999999999
Q ss_pred EEEe
Q 013061 395 RLSW 398 (450)
Q Consensus 395 ~v~~ 398 (450)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 325
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.1e-15 Score=111.78 Aligned_cols=77 Identities=30% Similarity=0.500 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCCC
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 404 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 404 (450)
.+++|||+|||+++++++|+++|+.||.|.+|.|+.+ +++|||+|.+ .++|.+|.. ....+.++.|+|.|++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFAD-DQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSC-HHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECC-HHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 4689999999999999999999999999999999875 8999999999 999875422 13345899999999998764
Q ss_pred C
Q 013061 405 K 405 (450)
Q Consensus 405 ~ 405 (450)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 326
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.6e-15 Score=110.88 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=70.7
Q ss_pred eEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 210 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
+|||+|||.++++++|+++|+ .||.|.++.+.+++.++.++|+|||+|.+.++|.+|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999995 99999999999999899999999999999999999998 5889999999999875
No 327
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=117.98 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCC---CCcceeEEEEeccHHHHHHHHHHh
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSY 177 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l 177 (450)
...++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 5678999999999999999999999999999 888888777 799999999999999999999988
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=2.5e-15 Score=113.46 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=64.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
......+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|. .+++..+...++.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEE
Confidence 3457889999999999999999999999999999999874 6799999999999998 356766666778888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
+.++.+.
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 8887643
No 329
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=108.99 Aligned_cols=80 Identities=19% Similarity=0.436 Sum_probs=72.7
Q ss_pred cCCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 204 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
.....++|||+|||.++++++|+++|+ .||.|.++.+.++ ||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345678999999999999999999995 9999999998743 9999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 013061 284 DVATPKKAS 292 (450)
Q Consensus 284 ~~~~~~~~~ 292 (450)
+++.++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999887543
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=115.87 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC---CCCC
Q 013061 112 NDETKTIWI--GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM---PNTD 186 (450)
Q Consensus 112 ~~~~~~l~V--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~~~~ 186 (450)
..++++||| +||++++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|||..+ .+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 356789999 779999999999999999999999987643 58999999999999999999999865 3346
Q ss_pred Ccceecccc
Q 013061 187 QPFRLNWAT 195 (450)
Q Consensus 187 ~~i~~~~~~ 195 (450)
+++.+.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 677776654
No 331
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=109.21 Aligned_cols=77 Identities=32% Similarity=0.522 Sum_probs=62.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-CcEEEEEeecCHHHHHHHHHHhcCCe--eCCeEEEEEec
Q 013061 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANSRKDAEVALQKLQGTA--IGKQTVRLSWG 399 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-~g~afV~F~~~~~~A~~A~~~l~g~~--~~g~~l~v~~~ 399 (450)
.....++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|+|||+|.+ .++|.+ |++.. +.|+.|.|.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~-~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFAD-DKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESC-HHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECC-HHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3456789999999999999999999999999999999875 8999999999 888873 56665 45999999999
Q ss_pred cCCCC
Q 013061 400 RNPGN 404 (450)
Q Consensus 400 ~~~~~ 404 (450)
+++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87643
No 332
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=112.22 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=69.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEEEEee------CCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP------VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~------~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
....++|||+|||+++++++|+++|+.||.|.. .++ ..+++|||+|.+ .++|.+|++ ||+..|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~-~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFES-AEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESS-HHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECC-HHHHHHHHh-cCCcEECCcEEEEE
Confidence 345789999999999999999999999998766 332 347999999999 999999999 99999999999999
Q ss_pred eccCCCCC
Q 013061 398 WGRNPGNK 405 (450)
Q Consensus 398 ~~~~~~~~ 405 (450)
|++++..+
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99986543
No 333
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=116.96 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCC---eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
....++|||+|||+++|+++|+++|+ .||. |..|.|+++.. ++++|+|||+|.+.++|.+||. +++..++++.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 44678999999999999999999995 9888 89999999987 9999999999999999999999 99999999999
Q ss_pred EEeecCCC
Q 013061 282 RIDVATPK 289 (450)
Q Consensus 282 ~v~~~~~~ 289 (450)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998754
No 334
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-14 Score=109.46 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=72.0
Q ss_pred ccCCCCceEEECCCCCCCCHHHHHHHHhhcC--CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013061 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~--g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 280 (450)
....+.++|||+|||.++++++|+++|+ .| |.|..+.+. +|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999995 99 999988764 569999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 013061 281 MRIDVATPKKA 291 (450)
Q Consensus 281 i~v~~~~~~~~ 291 (450)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999988654
No 335
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=9.7e-15 Score=114.26 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=72.5
Q ss_pred ceEEECCC----CCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCC----HHH----HHHHHH--HhCCc
Q 013061 209 LSIFVGDL----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENE----RSRAMT--EMNGV 274 (450)
Q Consensus 209 ~~l~v~nl----~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~----~~~----a~~A~~--~l~~~ 274 (450)
.+|||+|| |+.+++++|+++|+ .||+|.++.++.|++||+++|||||+|.+ .++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 99999999999995 99999999999999999999999999996 333 788888 78999
Q ss_pred eecCccEEEeecCCCC
Q 013061 275 YCSSRPMRIDVATPKK 290 (450)
Q Consensus 275 ~~~g~~i~v~~~~~~~ 290 (450)
.|+|+.|+|.+.....
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 9999999999886543
No 336
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.4e-15 Score=117.39 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=73.0
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCe----eEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSV----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i----~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
....+|||+|||+++|+++|+++|+ .||.| .+|.|+++ .+++++|+|||+|.+.++|.+||+. ++..|.++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567999999999999999999995 99875 68999998 4799999999999999999999985 9999999999
Q ss_pred EEeecCCC
Q 013061 282 RIDVATPK 289 (450)
Q Consensus 282 ~v~~~~~~ 289 (450)
+|..+.++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988654
No 337
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=110.13 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|| ++|+++|+++|+.||.|.+|+|. +++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 80 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 80 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 3457789999996 99999999999999999999984 4668999999999999999999999988 568899
Q ss_pred eccccccCC
Q 013061 191 LNWATFSGS 199 (450)
Q Consensus 191 ~~~~~~~~~ 199 (450)
|.|+.....
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 988875533
No 338
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=3e-14 Score=109.46 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=70.4
Q ss_pred ccCCCCceEEECCCCC-CCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 203 TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 203 ~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
....++++|||+|||. ++++++|+++|+ .||.|.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445678999999998 999999999995 99999999883 6899999999999999999999999999999
Q ss_pred EEeecCCC
Q 013061 282 RIDVATPK 289 (450)
Q Consensus 282 ~v~~~~~~ 289 (450)
+|+++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=124.88 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEE--E---EecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK--V---IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~--i---~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
..+.++|||+|||+++|+++|+++|+.||.|.+|. + +....+++++|||||+|.+.++|.+|++.||+..+ .+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CC
Confidence 45778999999999999999999999999987751 1 11124688999999999999999999999999999 56
Q ss_pred Ccceecccccc
Q 013061 187 QPFRLNWATFS 197 (450)
Q Consensus 187 ~~i~~~~~~~~ 197 (450)
+.|+|.++...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 88888888654
No 340
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=111.64 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=72.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
..+.++|||+|||.++++++|+++|+ .||.|..+ ..++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999999999999999995 89988766 2468899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013061 285 VATPKKA 291 (450)
Q Consensus 285 ~~~~~~~ 291 (450)
++.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9987654
No 341
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=2.9e-14 Score=112.49 Aligned_cols=78 Identities=31% Similarity=0.529 Sum_probs=70.8
Q ss_pred CCCCceEEECCCCCC-CCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEE
Q 013061 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 283 (450)
...+++|||+|||.+ +++++|+++|+ .||.|..|.+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345689999999999 99999999995 9999999988 4689999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013061 284 DVATPKKA 291 (450)
Q Consensus 284 ~~~~~~~~ 291 (450)
.++.+...
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99986543
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=1.5e-14 Score=114.92 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCC
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 186 (450)
...++|||+|||+++|+++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+||+.||+..+.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45789999999999999999999999999999999876 79999999999999999999999995543
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=2e-14 Score=123.22 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=78.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEe
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 284 (450)
...+++|||+|||.++++++|+++|+ .||.|..|.|..+. ++.++|+|||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999995 99999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 013061 285 VATPKK 290 (450)
Q Consensus 285 ~~~~~~ 290 (450)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 344
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=8.9e-15 Score=117.16 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCCCceEEECCCCCCCCHHHHHHHHhhcCCCee--EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 205 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~--~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
....++|||+|||+++|+++|+++|+ .| .|. +|+|++|+. ++++|||||+|.+.++|.+||+ +++..|.++.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999995 88 577 899999987 9999999999999999999998 577999999999
Q ss_pred EeecCCC
Q 013061 283 IDVATPK 289 (450)
Q Consensus 283 v~~~~~~ 289 (450)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 345
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=8.6e-15 Score=113.89 Aligned_cols=82 Identities=27% Similarity=0.524 Sum_probs=75.2
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEee
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 285 (450)
..+++|||+|||.++++++|+++|+ .||.|.++.++.+. ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3467999999999999999999995 99999999999998 89999999999999999999998 99999999999999
Q ss_pred cCCCCC
Q 013061 286 ATPKKA 291 (450)
Q Consensus 286 ~~~~~~ 291 (450)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 346
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.2e-14 Score=129.25 Aligned_cols=81 Identities=25% Similarity=0.542 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCCC---------CHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCee-----
Q 013061 324 ESNNATIFVGALDSDV---------SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAI----- 389 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~----- 389 (450)
....++|||+||+..+ ++++|+++|+.||.|++|+|+.++++|||+|.+ .++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~-~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKY-QANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESS-HHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCC-HHHHHHHHHHhCCCEEecccc
Confidence 4467899999999998 799999999999999999999999999999999 9999999999999999
Q ss_pred -------CCeEEEEEeccCCCCC
Q 013061 390 -------GKQTVRLSWGRNPGNK 405 (450)
Q Consensus 390 -------~g~~l~v~~~~~~~~~ 405 (450)
.|+.|.|.|++...+.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999976543
No 347
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=109.19 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=70.0
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCC-eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC-ceecCccEEE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRI 283 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v 283 (450)
...++|||+|||.++++++|+++|+ .||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4567999999999999999999995 9999 6666553 367999999999999999999999 9999999999
Q ss_pred eecCCCCCC
Q 013061 284 DVATPKKAS 292 (450)
Q Consensus 284 ~~~~~~~~~ 292 (450)
.++.++..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887554
No 348
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=3.7e-14 Score=106.94 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++|||+|||+++++++|+++|+ .| .|.++.+. +++|+|||+|.+.++|.+|++.||+..+.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 567899999999999999999995 89 99999884 56899999999999999999999999999999999998
Q ss_pred CCCC
Q 013061 287 TPKK 290 (450)
Q Consensus 287 ~~~~ 290 (450)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 349
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=118.45 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=70.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhccccCceEE--------EEee---CCCcEEEEEeecCHHHHHHHHHHhcCCeeCCe
Q 013061 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILS--------VKIP---VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQ 392 (450)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~--------v~i~---~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~ 392 (450)
..++++|||+|||+++++++|+++|+.||.|.. +.+. ..+++|||+|.+ .++|.+|+..|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~-~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN-EKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSS-HHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCC-HHHHHHHHHHhCCCEeCCc
Confidence 445689999999999999999999999998865 4333 247999999999 9999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 013061 393 TVRLSWGRNPGNK 405 (450)
Q Consensus 393 ~l~v~~~~~~~~~ 405 (450)
.|+|.|+++...+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999876544
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=1.1e-13 Score=107.40 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=67.4
Q ss_pred CCCcEEEEecCCC-----CCCHHHHHHhccccCceEEEEeeCC-------CcEEEEEeecCHHHHHHHHHHhcCCeeCCe
Q 013061 325 SNNATIFVGALDS-----DVSDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANSRKDAEVALQKLQGTAIGKQ 392 (450)
Q Consensus 325 ~~~~~l~V~nlp~-----~~t~~~L~~~F~~~G~v~~v~i~~~-------~g~afV~F~~~~~~A~~A~~~l~g~~~~g~ 392 (450)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+++ +|+|||+|.+ .++|.+|+..|||+.|.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~-~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFER-VESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESS-HHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECC-HHHHHHHHHHHCCCEECCc
Confidence 4578999999963 2378999999999999999998752 6899999999 9999999999999999999
Q ss_pred EEEEEeccC
Q 013061 393 TVRLSWGRN 401 (450)
Q Consensus 393 ~l~v~~~~~ 401 (450)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=2.5e-14 Score=107.67 Aligned_cols=72 Identities=17% Similarity=0.485 Sum_probs=63.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCC
Q 013061 112 NDETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 180 (450)
....++|||+|||+++++++|+++|+.| | .|.+|++.++ +|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3568899999999999999999999999 8 8999998765 589999999999999999 99999
Q ss_pred CCCCCCCcceec
Q 013061 181 LMPNTDQPFRLN 192 (450)
Q Consensus 181 ~~~~~~~~i~~~ 192 (450)
.+ .++.++|.
T Consensus 76 ~~--~g~~l~V~ 85 (87)
T 2hzc_A 76 IF--QGQSLKIR 85 (87)
T ss_dssp EE--TTEECEEE
T ss_pred EE--CCeEEEEe
Confidence 98 44566654
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=108.08 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcceec
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~~~ 192 (450)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|++ +++..+...++.|++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 46789999999999999999999999999999999865 67899999999999975 3555555567888888
Q ss_pred cccccCC
Q 013061 193 WATFSGS 199 (450)
Q Consensus 193 ~~~~~~~ 199 (450)
++.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8875533
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=2e-13 Score=106.06 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCCCceEEECCCCC-----CCCHHHHHHHHhhcCCCeeEEEEeecCCC-CCceeEEEEEeCCHHHHHHHHHHhCCceecC
Q 013061 205 ACSDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (450)
Q Consensus 205 ~~~~~~l~v~nl~~-----~~t~~~l~~~f~~~~g~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 278 (450)
..++++|+|.|+.. +-++++|+++|+ .||.|.+|.|.+++.+ ++++|++||+|.+.++|.+|++.|||+.+.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999952 237899999995 9999999999998654 6889999999999999999999999999999
Q ss_pred ccEEEeecCC
Q 013061 279 RPMRIDVATP 288 (450)
Q Consensus 279 ~~i~v~~~~~ 288 (450)
|.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999865
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1.2e-13 Score=110.59 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCCCCcce
Q 013061 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~~i~ 190 (450)
.....++|||+|| ++|+++|+++|+.||.|.+|.+. +++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 3456889999995 79999999999999999999986 4668999999999999999999999998 568888
Q ss_pred ecccccc
Q 013061 191 LNWATFS 197 (450)
Q Consensus 191 ~~~~~~~ 197 (450)
|.|+...
T Consensus 105 V~~a~~~ 111 (121)
T 2bz2_A 105 VNIARKQ 111 (121)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 8888755
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.1e-13 Score=105.53 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCCCcEEEEecCCCCCC-----------HHHHHHhccccCceEEEEeeC--CCcEEEEEeecCHHHHHHHHHHhcCCee
Q 013061 323 GESNNATIFVGALDSDVS-----------DEDLREPFSQFGEILSVKIPV--GKGCGFVQFANSRKDAEVALQKLQGTAI 389 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t-----------~~~L~~~F~~~G~v~~v~i~~--~~g~afV~F~~~~~~A~~A~~~l~g~~~ 389 (450)
...++++|+|.||..... +++|+++|++||.|.+|.|.. .+|+|||+|.+ .++|.+|+..|||+.|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~-~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRD-PEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSC-HHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECC-HHHHHHHHHHcCCCEE
Confidence 445688999999944432 589999999999999997753 37999999999 9999999999999999
Q ss_pred CCeEEEEEeccCCCC
Q 013061 390 GKQTVRLSWGRNPGN 404 (450)
Q Consensus 390 ~g~~l~v~~~~~~~~ 404 (450)
.|+.|+|.|+.+...
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987653
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=108.99 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=67.3
Q ss_pred CCCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCC---CCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 206 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
...++|||+|||+++++++|+++|+ .||.|. +.++.+..+ ++++|||||+|.+.++|.+|++.|+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 4568999999999999999999995 999999 888888776 7999999999999999999999883 36666666
Q ss_pred EeecCC
Q 013061 283 IDVATP 288 (450)
Q Consensus 283 v~~~~~ 288 (450)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 655443
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=3.2e-13 Score=117.49 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=72.7
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeec
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 286 (450)
..++|||+|||.++++++|+++|+ .||.|..|++.++.. +.++|+|||+|.+.++|.+|+..++ ..+.|+.|.|.+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred ccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 457999999999999999999995 999999999999864 8999999999999999999997554 5899999999988
Q ss_pred CCCC
Q 013061 287 TPKK 290 (450)
Q Consensus 287 ~~~~ 290 (450)
....
T Consensus 185 ~~y~ 188 (193)
T 2voo_A 185 DDYF 188 (193)
T ss_dssp TTC-
T ss_pred HHHH
Confidence 7643
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=1e-12 Score=114.24 Aligned_cols=73 Identities=16% Similarity=0.348 Sum_probs=67.1
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccC
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRN 401 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 401 (450)
.++|||+|||+++++++|+++|+.||.|.+|+|+++ +|+|||+|.+ .++|.+|+..++ ..|+|+.|+|.|++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~-~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS-IESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESS-HHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECC-HHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 479999999999999999999999999999999863 6999999999 999999998655 599999999999875
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=6.1e-13 Score=103.34 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=66.6
Q ss_pred CCCcEEEEecC--CCCCC--------HHHHHHhccccCceEEEEeeCC--------CcEEEEEeecCHHHHHHHHHHhcC
Q 013061 325 SNNATIFVGAL--DSDVS--------DEDLREPFSQFGEILSVKIPVG--------KGCGFVQFANSRKDAEVALQKLQG 386 (450)
Q Consensus 325 ~~~~~l~V~nl--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~--------~g~afV~F~~~~~~A~~A~~~l~g 386 (450)
.++++|.|.|+ |.++. +++|+++|++||.|.+|.|+++ +|++||+|.+ .++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~-~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS-VFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESS-HHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECC-HHHHHHHHHHhCC
Confidence 45789999998 43443 3789999999999999999853 5899999999 9999999999999
Q ss_pred CeeCCeEEEEEeccC
Q 013061 387 TAIGKQTVRLSWGRN 401 (450)
Q Consensus 387 ~~~~g~~l~v~~~~~ 401 (450)
+.|+||.|+|+|...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.6e-13 Score=119.64 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 112 NDETKTIWIGDLFHWM---------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
....++|||+||++.+ ++++|+++|++||+|++|+|+.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578899999999998 79999999999999999999864 58999999999999999999999998
Q ss_pred CC----------CCCcceecccccc
Q 013061 183 PN----------TDQPFRLNWATFS 197 (450)
Q Consensus 183 ~~----------~~~~i~~~~~~~~ 197 (450)
.. .++.|+|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 32 5678999998754
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-12 Score=103.32 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcC
Q 013061 111 TNDETKTIWIGDLFHWMD-----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (450)
Q Consensus 111 ~~~~~~~l~V~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 179 (450)
...++++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999954332 6899999999999999955 654 3789999999999999999999999
Q ss_pred CCCCCCCCcceecccccc
Q 013061 180 SLMPNTDQPFRLNWATFS 197 (450)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~ 197 (450)
..+ .++.|++.++...
T Consensus 87 ~~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWF--GGRQITAQAWDGT 102 (112)
T ss_dssp CEE--TTEECEEEECCSC
T ss_pred CEE--CCcEEEEEEeCCC
Confidence 998 5688888887654
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-12 Score=98.09 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=64.6
Q ss_pred CcEEEEecCC-------CCCCHHHHHHhccccCceEEEEee-CCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013061 327 NATIFVGALD-------SDVSDEDLREPFSQFGEILSVKIP-VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSW 398 (450)
Q Consensus 327 ~~~l~V~nlp-------~~~t~~~L~~~F~~~G~v~~v~i~-~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~ 398 (450)
..+|.|.-.. ..+++++|+++|++||.|.+|.|+ ..+|+|||+|.+ .++|..|++.+++ +.++.|+|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~-~~~A~~Ai~~~~~--~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFAT-VKAAELAVQNEVG--LVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESC-HHHHHHHHHTCCB--CSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECC-HHHHHHHHHhcCC--CCCCeEEEEE
Confidence 4567776544 458999999999999999999997 458999999999 9999999997544 6899999999
Q ss_pred ccCCCCCC
Q 013061 399 GRNPGNKQ 406 (450)
Q Consensus 399 ~~~~~~~~ 406 (450)
++++....
T Consensus 87 a~~~~~~~ 94 (100)
T 2d9o_A 87 LEGQPQDA 94 (100)
T ss_dssp SSCCCCCC
T ss_pred ccCCCCCC
Confidence 99876443
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=2.2e-12 Score=102.12 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=65.8
Q ss_pred CCcEEEEecCCC--C---CCHHHHHHhccccCceEEEEeeCC----------CcEEEEEeecCHHHHHHHHHHhcCCeeC
Q 013061 326 NNATIFVGALDS--D---VSDEDLREPFSQFGEILSVKIPVG----------KGCGFVQFANSRKDAEVALQKLQGTAIG 390 (450)
Q Consensus 326 ~~~~l~V~nlp~--~---~t~~~L~~~F~~~G~v~~v~i~~~----------~g~afV~F~~~~~~A~~A~~~l~g~~~~ 390 (450)
++++|+|.|+-. + -.++||+++|++||.|.+|.|+++ +|++||+|.+ .++|.+|+..|||+.|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~-~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI-ASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESS-HHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECC-HHHHHHHHHHHCCCEEC
Confidence 578999999932 2 246899999999999999998764 3799999999 99999999999999999
Q ss_pred CeEEEEEeccC
Q 013061 391 KQTVRLSWGRN 401 (450)
Q Consensus 391 g~~l~v~~~~~ 401 (450)
||.|+|+|...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999763
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=2.5e-12 Score=99.80 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=71.0
Q ss_pred CCCceEEECCC--CCCCC--------HHHHHHHHhhcCCCeeEEEEeecCCC--CCceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 206 CSDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 206 ~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~~g~i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
.++++|.|.|+ +.++. +++|+++|+ +||.|.+|.|.++..+ ++++|++||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 36788999997 33333 368999995 9999999999988754 46899999999999999999999999
Q ss_pred ceecCccEEEeecCCC
Q 013061 274 VYCSSRPMRIDVATPK 289 (450)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (450)
+.+.||.|+|.++...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998643
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=2.3e-12 Score=120.83 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=69.4
Q ss_pred CCCCCcEEEEec--CCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeC---Ce--EEE
Q 013061 323 GESNNATIFVGA--LDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIG---KQ--TVR 395 (450)
Q Consensus 323 ~~~~~~~l~V~n--lp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~---g~--~l~ 395 (450)
...++++|||+| |++.+|+++|+++|++||.|.+|.+.++|+||||+|.+ .++|++|++.|||+++. |+ .|.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~-~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRT-TEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESS-HHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCCccccccCCceEEE
Confidence 356678999999 57899999999999999999999999999999999999 99999999999999883 44 688
Q ss_pred EEecc
Q 013061 396 LSWGR 400 (450)
Q Consensus 396 v~~~~ 400 (450)
|.|..
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88885
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=5e-12 Score=100.05 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCceEEECCCC--CC---CCHHHHHHHHhhcCCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHHHHHHHhCCceec
Q 013061 207 SDLSIFVGDLA--PD---VTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (450)
Q Consensus 207 ~~~~l~v~nl~--~~---~t~~~l~~~f~~~~g~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 277 (450)
++++|+|.|+- .+ -.++||+++|+ +||.|.+|.|.++.. +++++|++||+|.+.++|.+|++.|||+.|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 67899999983 22 23689999995 999999999999864 4578899999999999999999999999999
Q ss_pred CccEEEeecCC
Q 013061 278 SRPMRIDVATP 288 (450)
Q Consensus 278 g~~i~v~~~~~ 288 (450)
||.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999854
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=8.8e-12 Score=97.90 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCCcEEEEecCCCCC----------CHHHHHHhccccCceEEEEeeCC--CcEEEEEeecCHHHHHHHHHHhcCCeeCCe
Q 013061 325 SNNATIFVGALDSDV----------SDEDLREPFSQFGEILSVKIPVG--KGCGFVQFANSRKDAEVALQKLQGTAIGKQ 392 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~----------t~~~L~~~F~~~G~v~~v~i~~~--~g~afV~F~~~~~~A~~A~~~l~g~~~~g~ 392 (450)
.++++|.|.|+=... .++||+++|++||.|.+|.|.++ +|++||+|.+ .++|.+|++.|||+.|+||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~-~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS-IAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSS-HHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECC-HHHHHHHHHHhCCCEECCE
Confidence 457789999983221 24688999999999999999875 6999999999 9999999999999999999
Q ss_pred EEEEEecc
Q 013061 393 TVRLSWGR 400 (450)
Q Consensus 393 ~l~v~~~~ 400 (450)
.|+|+|..
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-11 Score=93.20 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=64.1
Q ss_pred CCCceEEEcCCC-------CCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCCCC
Q 013061 113 DETKTIWIGDLF-------HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (450)
Q Consensus 113 ~~~~~l~V~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 185 (450)
...++|.|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ + .
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~ 78 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--V 78 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--S
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--C
Confidence 446788887765 458999999999999999999997 36789999999999999999987554 3 4
Q ss_pred CCcceeccccccC
Q 013061 186 DQPFRLNWATFSG 198 (450)
Q Consensus 186 ~~~i~~~~~~~~~ 198 (450)
+++|+|.|+....
T Consensus 79 g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 DNPLKISWLEGQP 91 (100)
T ss_dssp SSBCEEECSSCCC
T ss_pred CCeEEEEEccCCC
Confidence 6889999987554
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1.9e-12 Score=100.37 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=62.2
Q ss_pred ECCCCCCCCHHHHHHHH------------hhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013061 213 VGDLAPDVTDSILQETF------------SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (450)
Q Consensus 213 v~nl~~~~t~~~l~~~f------------~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 280 (450)
+.+|+..+++++|++.| + .||.|.+|.|.++.. ++++|+|||+|.+.++|.+|++.|||+.+.|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 44666666776666555 7 999999999998865 789999999999999999999999999999999
Q ss_pred EEEeec
Q 013061 281 MRIDVA 286 (450)
Q Consensus 281 i~v~~~ 286 (450)
|+|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.5e-12 Score=117.28 Aligned_cols=111 Identities=12% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCCCCC---CC
Q 013061 111 TNDETKTIWIGD--LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP---NT 185 (450)
Q Consensus 111 ~~~~~~~l~V~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---~~ 185 (450)
.+.++++|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. +.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 357889999999 578999999999999999999987743 4689999999999999999999998873 22
Q ss_pred CCcceeccccccCCCC-cccCCCCceEEECCCCCCCCHHHHHHHHh
Q 013061 186 DQPFRLNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFS 230 (450)
Q Consensus 186 ~~~i~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 230 (450)
..++.+.+...-.... .....+....++.+ -+++++-..++.
T Consensus 88 ~~~ly~~~~~~~~~~~~~~~~lp~Gl~~~p~---fis~~Ee~~Ll~ 130 (345)
T 3tht_A 88 KITLYLNFVEKVQWKELRPQALPPGLMVVEE---IISSEEEKMLLE 130 (345)
T ss_dssp EEECEEEECSSEEEEEEECCSCCTTEEEETT---CSCHHHHHHHHT
T ss_pred ceEEEEEEeecccccccccccCCCceEEEcC---cCCHHHHHHHHH
Confidence 2256666553211100 11122233444433 466666666663
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.6e-12 Score=100.85 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=57.7
Q ss_pred EecCCCCCCHHHHHHhc------------cccCceEEEEeeCC-----CcEEEEEeecCHHHHHHHHHHhcCCeeCCeEE
Q 013061 332 VGALDSDVSDEDLREPF------------SQFGEILSVKIPVG-----KGCGFVQFANSRKDAEVALQKLQGTAIGKQTV 394 (450)
Q Consensus 332 V~nlp~~~t~~~L~~~F------------~~~G~v~~v~i~~~-----~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l 394 (450)
+.+|+..+++++|+++| ++||.|.+|.|+++ +|+|||+|.+ .++|.+|+..|||+.|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~-~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRR-EEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESC-HHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECC-HHHHHHHHHHHCCCEECCEEE
Confidence 45666666666666555 99999999999874 6999999999 999999999999999999999
Q ss_pred EEEec
Q 013061 395 RLSWG 399 (450)
Q Consensus 395 ~v~~~ 399 (450)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=8.5e-11 Score=92.20 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=70.7
Q ss_pred CCCCCCCcEEEEecCCCC-CCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc--CCeeCCeEEEEE
Q 013061 321 SDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ--GTAIGKQTVRLS 397 (450)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~--g~~~~g~~l~v~ 397 (450)
+...+..++|+|+||+++ +++++|+++|+.||.|.+|.+.++...|||+|.++.++|..|+..|+ +..|.|..++++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 345667899999999999 99999999999999999999999999999999883478899999994 778999999988
Q ss_pred ecc
Q 013061 398 WGR 400 (450)
Q Consensus 398 ~~~ 400 (450)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=7.7e-11 Score=86.31 Aligned_cols=74 Identities=23% Similarity=0.420 Sum_probs=63.0
Q ss_pred CCCcEEEEecCC----CCCCH----HHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013061 325 SNNATIFVGALD----SDVSD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRL 396 (450)
Q Consensus 325 ~~~~~l~V~nlp----~~~t~----~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v 396 (450)
++..+|+|.-.+ ....+ .+|.+.|+.||.|..+++..++ +||+|.+ .++|.+|++ |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d-~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLE-GSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESS-HHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECC-hHHHHHHHh-cCCeEeCCeEEEE
Confidence 445677777766 23334 6788999999999999999876 8999999 999999998 9999999999999
Q ss_pred EeccCC
Q 013061 397 SWGRNP 402 (450)
Q Consensus 397 ~~~~~~ 402 (450)
.++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999874
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.11 E-value=2.7e-10 Score=89.36 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=65.5
Q ss_pred CCCceEEECCCCC--CC--------CHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 013061 206 CSDLSIFVGDLAP--DV--------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (450)
Q Consensus 206 ~~~~~l~v~nl~~--~~--------t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 275 (450)
.++++|.|.|+=. +. .++||+++|+ +||.|.+|.|.++. .+|++||+|.+.++|.+|++.|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4677888888722 11 2358899995 99999999987653 48999999999999999999999999
Q ss_pred ecCccEEEeecCCC
Q 013061 276 CSSRPMRIDVATPK 289 (450)
Q Consensus 276 ~~g~~i~v~~~~~~ 289 (450)
|+||.|+|.++...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999998643
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4.4e-10 Score=82.62 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=63.8
Q ss_pred CCCCCcEEEEecCCCC-----CCH----HHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeE
Q 013061 323 GESNNATIFVGALDSD-----VSD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQT 393 (450)
Q Consensus 323 ~~~~~~~l~V~nlp~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~ 393 (450)
..++.-+|+|.-++.+ +.+ .+|.+.|..||.|..++|..++ +||+|.+ .++|.+|++ |||..+.||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d-~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFAD-SHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSC-SHHHHHHHH-GGGSEETTEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcC-hHHHHHHHh-cCCeeeCCeE
Confidence 4456678999888643 223 5688999999999999999876 9999999 999999998 9999999999
Q ss_pred EEEEeccC
Q 013061 394 VRLSWGRN 401 (450)
Q Consensus 394 l~v~~~~~ 401 (450)
|+|++..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.5e-09 Score=85.11 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEecc-HHHHHHHHHHhcCCCCCCCCCcc
Q 013061 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQSYSGSLMPNTDQPF 189 (450)
Q Consensus 112 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~~~~~~~~~i 189 (450)
-...+.|+|+||+++ +++++|+++|+.||+|..|.+.++.. .|||+|.+ .++|..|++.++...+...+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356789999999999 99999999999999999999999875 59999999 89999999998644332233444
Q ss_pred ee
Q 013061 190 RL 191 (450)
Q Consensus 190 ~~ 191 (450)
++
T Consensus 89 ~~ 90 (121)
T 1owx_A 89 TW 90 (121)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.5e-08 Score=75.78 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhcccc-----CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQF-----GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLS 397 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~ 397 (450)
...++|-+-|||..+++..|+.+.+.+ |.++.|.+.++.+-|+|+|.| ...|-+|...|+|.+|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d-~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRD-SKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSC-HHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEcc-chhhHHHHhhcCCeeecCeEEEec
Confidence 346789999999999999999999999 999999999999999999999 999999999999999999999986
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.6e-08 Score=73.96 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=60.3
Q ss_pred CCceEEECCCC----CCCCH----HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecC
Q 013061 207 SDLSIFVGDLA----PDVTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (450)
Q Consensus 207 ~~~~l~v~nl~----~~~t~----~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 278 (450)
+.-+|+|.-.+ .++-. .+|.+.|+ .||+|..+++..++ +||+|.+.++|.+|++ ||+..++|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 44566666554 22333 57889995 99999999999873 8999999999999998 99999999
Q ss_pred ccEEEeecCCC
Q 013061 279 RPMRIDVATPK 289 (450)
Q Consensus 279 ~~i~v~~~~~~ 289 (450)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999865
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.70 E-value=4.2e-08 Score=87.26 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCHHHHHHhccccCceEEEEee----------CCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 339 VSDEDLREPFSQFGEILSVKIP----------VGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 339 ~t~~~L~~~F~~~G~v~~v~i~----------~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
-.+++|++.|++||.|.++.|. +.+|++||+|.+ .++|.+|+..|||+.|.||.|+++|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~-~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI-ASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESS-HHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECC-HHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568899999999999999997 336899999999 999999999999999999999999975
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=9.2e-08 Score=85.05 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=60.9
Q ss_pred CCHHHHHHHHhhcCCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecCC
Q 013061 220 VTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (450)
Q Consensus 220 ~t~~~l~~~f~~~~g~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 288 (450)
..+++|++.|+ .||.|.++.|.++.. +++++|++||+|.+.++|.+|+..|||+.+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45689999995 999999999986643 458999999999999999999999999999999999999853
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.4e-07 Score=69.42 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCceEEECCCCCC-----CCH----HHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 013061 206 CSDLSIFVGDLAPD-----VTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (450)
Q Consensus 206 ~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 276 (450)
.+.-+|+|.-++.+ +-. .+|.+.|+ .||+|..+++..|+ +||+|.+.++|.+||+ |++..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 45668888777632 222 56889995 89999999999773 9999999999999998 999999
Q ss_pred cCccEEEeecCC
Q 013061 277 SSRPMRIDVATP 288 (450)
Q Consensus 277 ~g~~i~v~~~~~ 288 (450)
+||.|+|++-.+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999987643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.7e-06 Score=63.72 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=66.3
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcC-----CCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccE
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKY-----PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~-----g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 281 (450)
..++|-|-|||..++...|+.++ +.+ |+|..|.+..|.. -|+|+|.+..+|.+|...|+|.+|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 46789999999999999999999 599 9999999998854 69999999999999999999999999999
Q ss_pred EEeec
Q 013061 282 RIDVA 286 (450)
Q Consensus 282 ~v~~~ 286 (450)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98654
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=5.9e-06 Score=61.84 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCCC-CH----HHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 326 NNATIFVGALDSDV-SD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 326 ~~~~l~V~nlp~~~-t~----~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
..++|+|.||+.++ .. +.++++|..|+.+.....+++-.-..|.|.+ .++|.+|...||+..|.|+.|+|=|+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~-~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSN-PLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSS-TTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCC-hHHHHHHHHHhccceecCceeEEEecC
Confidence 35789999998876 22 5678999999999999999988889999999 999999999999999999999999998
Q ss_pred CC
Q 013061 401 NP 402 (450)
Q Consensus 401 ~~ 402 (450)
+.
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=0.00014 Score=54.07 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=60.3
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhc----CCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSK----YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~----~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
...+|.|.|||.+++++.|.-.|++. .|+|..+.... +.|+|+|.+.+.|++.++ -..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 45689999999999999999999641 47788887754 369999999999999986 336778889999
Q ss_pred EeecCCCC
Q 013061 283 IDVATPKK 290 (450)
Q Consensus 283 v~~~~~~~ 290 (450)
|....++.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 97765543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00031 Score=52.28 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=61.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhcccc-----CceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQF-----GEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~-----G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
..++|.|.|||..+.++.|.-+|++- |.|.+|.... +.|+|+|.+ .+.|.+.++. ..+.|.+..|.|.-..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d-~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFRE-PADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESS-HHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcC-hHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 35799999999999999999999762 6899999886 899999999 9999888773 3678899999997654
Q ss_pred CCC
Q 013061 401 NPG 403 (450)
Q Consensus 401 ~~~ 403 (450)
+..
T Consensus 83 ~~~ 85 (104)
T 2dhx_A 83 PRA 85 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.66 E-value=0.00012 Score=53.82 Aligned_cols=67 Identities=9% Similarity=0.098 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCC--cceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 116 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
.+|.||+||+.+||+++.+.+..+..+.....+..+.+.+ ...-|||.|++.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5799999999999999999999998776666665543222 224599999999999999999999877
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=0.00028 Score=54.38 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCC-eEEEEEecc
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGK-QTVRLSWGR 400 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g-~~l~v~~~~ 400 (450)
...+-|.|.+.|... .+.|..+|++||.|.+........+..|+|.+ +.+|.+||. .||..|.+ ..|-|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s-~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQS-KLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESS-HHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCC-HHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 346788899998885 67788999999999999987778999999999 999999999 59999985 667777654
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.51 E-value=0.00044 Score=50.73 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhc
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 178 (450)
....++| +.|+++...||.++|+.||. ..|+.+.|. .|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445667 99999999999999999994 567777774 59999999999999998764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.00062 Score=50.08 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=59.4
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC--------CcEEEEEeecCHHHHHHHHHHhcCCeeCC-----eEE
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--------KGCGFVQFANSRKDAEVALQKLQGTAIGK-----QTV 394 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--------~g~afV~F~~~~~~A~~A~~~l~g~~~~g-----~~l 394 (450)
++|.|++||+.+|++++.+.+.....+....+..+ ..-|||.|.+ .+++..-.+.++|..|.+ ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~-~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKN-QEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESS-SHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCC-HHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47899999999999999999999888877776543 2789999999 899999999999998753 234
Q ss_pred EEEecc
Q 013061 395 RLSWGR 400 (450)
Q Consensus 395 ~v~~~~ 400 (450)
.|+||.
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 566654
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.27 E-value=0.00071 Score=50.59 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=62.6
Q ss_pred CceEEECCCCCCC-C----HHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEE
Q 013061 208 DLSIFVGDLAPDV-T----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (450)
Q Consensus 208 ~~~l~v~nl~~~~-t----~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 282 (450)
.++|+|.||+.++ . .+.++++| ..|+++.....++.-. -..|.|.+.++|.+|...|++..+.|+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf-~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLF-RTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHH-HTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHH-HhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4689999998765 2 25678899 4999998887776532 478999999999999999999999999999
Q ss_pred EeecCCC
Q 013061 283 IDVATPK 289 (450)
Q Consensus 283 v~~~~~~ 289 (450)
|.++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999744
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.00069 Score=49.89 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=46.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhc
Q 013061 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (450)
Q Consensus 117 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 178 (450)
.++| +.|+++...||.++|+.|| -..|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999999 4577777774 59999999999999998765
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.03 E-value=0.0028 Score=46.51 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ 385 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~ 385 (450)
...+++| ++|..+...||.++|+.||.| .|..+. ...|||.|.+ ++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid-DTsAlvvf~~-~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQ-PEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE-TTEEEEECSC-HHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc-CCeEEEEecC-HHHHHHHHHhcc
Confidence 4456667 999999999999999999844 333333 5799999999 999999998764
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.00058 Score=50.49 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=50.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCC--cceeEEEEeccHHHHHHHHHHhcCCCC
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~ 182 (450)
-+-+|.||.||+.+||+++.+.+..+-++.....+..+.+-+ ...-|||.|++.++.....+.++|..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 456899999999999999988887765433222222221111 123499999999999999999999876
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.84 E-value=0.003 Score=46.66 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCC--------CcEEEEEeecCHHHHHHHHHHhcCCeeCC-----
Q 013061 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--------KGCGFVQFANSRKDAEVALQKLQGTAIGK----- 391 (450)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~--------~g~afV~F~~~~~~A~~A~~~l~g~~~~g----- 391 (450)
..+.+|.|+.||+.+|++++.+.++..-.+....+..+ -.-|||.|.+ .++...-.+.++|..|.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~-~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRN-PDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESC-HHHHHHHHHHSTTEEEECTTCCE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCC-HHHHHHHHHHcCCcEEEeCCCCE
Confidence 34568999999999999999999987655544444332 2689999999 999999999999998754
Q ss_pred eEEEEEecc
Q 013061 392 QTVRLSWGR 400 (450)
Q Consensus 392 ~~l~v~~~~ 400 (450)
-...|+||.
T Consensus 86 ~~a~VE~AP 94 (97)
T 2l08_A 86 YPAVVEFAP 94 (97)
T ss_dssp EEEEEEECC
T ss_pred eeeEEEecC
Confidence 345667664
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.66 E-value=0.0036 Score=46.09 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ 385 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~ 385 (450)
.+++| ++|..+...||.++|+.||. ..|..+. ...|||.|.+ ++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wid-DTsAlvvf~~-~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQ-PEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEE-TTEEEEEEEE-ECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEc-CCeEEEEecC-HHHHHHHHHhcc
Confidence 45666 99999999999999999983 3344443 5799999999 999999999774
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.59 E-value=0.0022 Score=50.08 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=55.3
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEE-EEee-------------------CCCcEEEEEeecCHHHHHHHHHHhcC
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILS-VKIP-------------------VGKGCGFVQFANSRKDAEVALQKLQG 386 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~-v~i~-------------------~~~g~afV~F~~~~~~A~~A~~~l~g 386 (450)
..-|.|.+.|.+. ...|.+.|++||.|.+ +.+. .+..+..|+|++ ..+|.+|+. .||
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds-~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDN-PASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSS-HHHHHHHHT-TTT
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCC-HHHHHHHHH-hCC
Confidence 3467777887666 4567789999999866 3222 135789999999 999999999 599
Q ss_pred CeeCCeEEEEEecc
Q 013061 387 TAIGKQTVRLSWGR 400 (450)
Q Consensus 387 ~~~~g~~l~v~~~~ 400 (450)
..|.|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888765
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=62.68 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHH
Q 013061 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (450)
Q Consensus 114 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 175 (450)
..|+|+|. .|..+++.+|.++|++||+|.++.+..++. -||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 34689997 799999999999999999999999887653 599999999999997774
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.018 Score=44.35 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCceEEECCCCCCCCHHHHHHHHhhcCCCeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecC-ccEEEee
Q 013061 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRIDV 285 (450)
Q Consensus 207 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~i~v~~ 285 (450)
..+-|.|-++|... ...|.+.| +.||+|.+...... ..+-.|.|.+..+|++||. .|+..+.+ ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F-~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQF-AQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHH-HTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHH-HhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 46678999999885 56778888 49999998876211 3489999999999999996 79999874 6677766
Q ss_pred cCC
Q 013061 286 ATP 288 (450)
Q Consensus 286 ~~~ 288 (450)
...
T Consensus 94 ~~d 96 (119)
T 1wwh_A 94 CID 96 (119)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.45 E-value=0.0078 Score=58.32 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=41.5
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCc-EEEEEeecCHHHHHHHHH
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG-CGFVQFANSRKDAEVALQ 382 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g-~afV~F~~~~~~A~~A~~ 382 (450)
.++|+|. .|..+++.+|.++|++||.|.++.+..++| +|.|+|.+ .+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~-~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQ-KESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC----CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCC-HHHHHHHHh
Confidence 4689997 799999999999999999999999988764 99999999 777776554
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.54 E-value=0.32 Score=37.91 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=54.3
Q ss_pred CceEEECCCCCCCCHHHHHHHHhhcCCCeeEE-EEeec------------CCCC-CceeEEEEEeCCHHHHHHHHHHhCC
Q 013061 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIID------------SNTG-RTKGYGFVRFGDENERSRAMTEMNG 273 (450)
Q Consensus 208 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v-~~~~~------------~~~~-~~~g~afV~f~~~~~a~~A~~~l~~ 273 (450)
..-|.|-+.|.+.+ ..+.+.| ++||.|.+- .+.++ +... ....+..|+|++..+|.+||. .||
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCHHHH-HHHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 44677888877654 4677888 489998762 11110 0000 123578999999999999996 999
Q ss_pred ceecCccEEEeecCC
Q 013061 274 VYCSSRPMRIDVATP 288 (450)
Q Consensus 274 ~~~~g~~i~v~~~~~ 288 (450)
..|.|..|-|.+.++
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999998888877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.59 E-value=1.4 Score=43.53 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=46.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcCC
Q 013061 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (450)
Q Consensus 115 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 180 (450)
...++|+ +|..+...+|.++|+.||. .+|+.+.|. .|||.|.+.+.|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHhC
Confidence 4467776 8889999999999999995 466666553 6999999999999999987643
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=84.80 E-value=5.2 Score=28.40 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHh
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l 384 (450)
..+-|.|-|+|..+-..++.-.....|.--+|... .|.|.|+|.+ .++.+.|+.+|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqn-sdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQN-SDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESS-HHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecC-ChHHHHHHHHH
Confidence 35778999999998888776666666777778877 4799999999 89999999887
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.55 E-value=4.4 Score=39.92 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhc
Q 013061 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQ 385 (450)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~ 385 (450)
...+++|+ +|..+...+|.++|+.||.| +|+.+ +...|||.|.+ .+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~-~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQ-PEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSC-HHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECC-HHHHHHHHHHHH
Confidence 34577776 88899999999999999954 44444 45789999999 999999999885
No 404
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=74.42 E-value=0.63 Score=43.72 Aligned_cols=14 Identities=29% Similarity=0.143 Sum_probs=9.0
Q ss_pred CCCCHHHHHHhccc
Q 013061 337 SDVSDEDLREPFSQ 350 (450)
Q Consensus 337 ~~~t~~~L~~~F~~ 350 (450)
..+++++|+++...
T Consensus 227 ~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 227 ATVTLELLDELTHE 240 (358)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 35677777776543
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=70.74 E-value=9.3 Score=26.36 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=40.3
Q ss_pred CCHHHHHHhccccC-----ceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEecc
Q 013061 339 VSDEDLREPFSQFG-----EILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGR 400 (450)
Q Consensus 339 ~t~~~L~~~F~~~G-----~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 400 (450)
++..+|..++..-+ .|-.|.+.. .+.||+-.. +.|..++..|++..+.|+.++|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d--~~s~v~v~~--~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMD--NASYVEILN--GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECS--SCEEEEECT--TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeC--CcEEEEECH--HHHHHHHHHhccccCcCceEEEEECC
Confidence 56677777665433 456677764 588898865 77889999999999999999998765
No 406
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=48.89 E-value=57 Score=24.00 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEee----cCCCCCceeEEEEEeCCHHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVII----DSNTGRTKGYGFVRFGDENERSRA 267 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~----~~~~~~~~g~afV~f~~~~~a~~A 267 (450)
...+..+|++.+++.|+.-.++.++. ....++++|||.| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 66788999998887766533333322 2234667777766 7777766554
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=48.54 E-value=13 Score=27.72 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEee----cCCCCCceeEEEEEeCCHHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVII----DSNTGRTKGYGFVRFGDENERSRA 267 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~----~~~~~~~~g~afV~f~~~~~a~~A 267 (450)
...+..+|++.+++.|+.-.++.++. ....++++|+|.| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788999988877666533333332 2234667888876 8888877653
No 408
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=44.00 E-value=12 Score=27.42 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEeecCC----CCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~ 266 (450)
...+..+|++.+++.|+.-.++.++..-. .+++.|+|.| |++.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788899988876666544444444332 3556677766 666655543
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=43.84 E-value=54 Score=21.71 Aligned_cols=56 Identities=5% Similarity=0.016 Sum_probs=45.9
Q ss_pred CcEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHh
Q 013061 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKL 384 (450)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l 384 (450)
..++.|.++.-.--...|...+.. ..|..+.+....+.+.|+|.+ .++...+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~-~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKED-VDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGG-HHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECC-HHHHHHHHHHc
Confidence 357888898887778889999988 889999888778889999985 77777788753
No 410
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=43.71 E-value=59 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEe----ecCCCCCceeEEEEEeCCHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSR 266 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~----~~~~~~~~~g~afV~f~~~~~a~~ 266 (450)
...+..+|++.+++.|+.-.++.++ .....+++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 6788899998887666553332222 22235667888876 888877654
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=43.23 E-value=85 Score=22.17 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=46.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceEEEEEecCCCCCcceeEEEEeccHHHHHHHHHHhcC
Q 013061 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (450)
Q Consensus 113 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 179 (450)
...+-|.|-|+|..+-..++.-.....|----|..+- |-|.+.|.+.++-..|+.+|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 4567899999999999988888888887544454432 4599999999999999988644
No 412
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=40.55 E-value=38 Score=23.06 Aligned_cols=61 Identities=7% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHhhcCC----CeeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceecCccEEEeecC
Q 013061 218 PDVTDSILQETFSSKYP----SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g----~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 287 (450)
..+...+|..++.+..| .|-.|.+..+ +.||+-... .+..+++.|+...+.|+.+.|+.+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 34677788888864443 2445655432 678887665 4677888899999999999887653
No 413
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=40.16 E-value=25 Score=27.81 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEeec----CCCCCceeEEEEEeCCHHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSRA 267 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~~----~~~~~~~g~afV~f~~~~~a~~A 267 (450)
...+..||++.++..|+.-.++.++.. ...+.+.|||.| |++.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 567889999988766665333333322 124567888877 8888877654
No 414
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=37.26 E-value=1.2e+02 Score=23.52 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHhhcCCCeeEEEEee----cCCCCCceeEEEEEeCCHHHHHHH
Q 013061 218 PDVTDSILQETFSSKYPSVKGAKVII----DSNTGRTKGYGFVRFGDENERSRA 267 (450)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~i~~v~~~~----~~~~~~~~g~afV~f~~~~~a~~A 267 (450)
...+..||++.++..|+.-.++.++. ....+.+.|||.| |++.+.|...
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46889999999987777543333332 2234667788877 8888776643
No 415
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.88 E-value=85 Score=25.56 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=36.7
Q ss_pred cEEEEecCCCC---------CCHHHHHHhc--cccCceEEEEeeCC---CcEEEEEeecCHHHHHHHHH
Q 013061 328 ATIFVGALDSD---------VSDEDLREPF--SQFGEILSVKIPVG---KGCGFVQFANSRKDAEVALQ 382 (450)
Q Consensus 328 ~~l~V~nlp~~---------~t~~~L~~~F--~~~G~v~~v~i~~~---~g~afV~F~~~~~~A~~A~~ 382 (450)
..+.|-|+|.. ....+|++.| +.|..+.-..+... .+++.|+|..+-.--..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 46677888862 3457899977 99987765444433 47899999874444444554
No 416
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.17 E-value=1.1e+02 Score=22.34 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=47.2
Q ss_pred EecCCCCCCHHHHHHhc-cccCceEEEEeeCCCcEEEEEeecCHHHHHHHHHHhcCCeeCCeEEEEEeccCCC
Q 013061 332 VGALDSDVSDEDLREPF-SQFGEILSVKIPVGKGCGFVQFANSRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 403 (450)
Q Consensus 332 V~nlp~~~t~~~L~~~F-~~~G~v~~v~i~~~~g~afV~F~~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 403 (450)
|-.++..+.-++|..-. +.||.-.++... .....|-..+ -++-.+|++.|+-. -.-+.|+|-+..++.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~s-QeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTT-QDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCS-HHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccC-HHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 44567888888887665 457888888777 4567888888 99999999987644 333444554444443
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.04 E-value=99 Score=25.16 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=36.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCceEEEEEecCCCCCcceeEEEEeccHHH
Q 013061 117 TIWIGDLFH-W--------MDETFLHNCF--SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (450)
Q Consensus 117 ~l~V~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 169 (450)
++.|-|+|. . .+..+|++.| ..|.++ .|+.+.++ .-..|+|.|+|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChH
Confidence 567778886 2 3457899977 899875 46666654 2477899999987655
No 418
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.24 E-value=69 Score=20.61 Aligned_cols=56 Identities=7% Similarity=0.169 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeec--CHHHHHHHHHH
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN--SRKDAEVALQK 383 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~--~~~~A~~A~~~ 383 (450)
.++.|.++.-..-...|...+.....|..+.+....+.+.|+|.+ ..++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 357788887766678888999888889999888888899999843 13444455553
No 419
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=28.66 E-value=1.2e+02 Score=19.67 Aligned_cols=56 Identities=7% Similarity=0.166 Sum_probs=41.9
Q ss_pred cEEEEecCCCCCCHHHHHHhccccCceEEEEeeCCCcEEEEEeec---CHHHHHHHHHH
Q 013061 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN---SRKDAEVALQK 383 (450)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~v~~v~i~~~~g~afV~F~~---~~~~A~~A~~~ 383 (450)
.++.|.++.-.--...|...+.....|..+.+....+.+.|+|.. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 357788877666677888888888888888887778899999953 15566666665
No 420
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.59 E-value=49 Score=23.76 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.9
Q ss_pred cceeEEEEeccHHHHHHHHHH
Q 013061 156 SEGYGFVEFYSRAAAEKVLQS 176 (450)
Q Consensus 156 ~~g~afV~f~~~~~A~~A~~~ 176 (450)
..||.||++...++...+++.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTT
T ss_pred cCCEEEEEEecchhHHHHHHC
Confidence 679999999999988888754
No 421
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.33 E-value=2.2e+02 Score=20.08 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=37.4
Q ss_pred EECCCCCCCCHHHHHHHHhhcCCC-eeEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHH
Q 013061 212 FVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (450)
Q Consensus 212 ~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 270 (450)
|+--.....+..+|++.+.+.|+. |..|..+.-+. + .--|+|++....+|....+.
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 333456788999999999666663 56665554432 2 23599999988887765543
Done!