Query 013062
Match_columns 450
No_of_seqs 179 out of 1332
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 1E-130 2E-135 941.0 31.8 438 1-445 1-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 7E-114 2E-118 888.5 34.5 449 1-449 1-449 (450)
3 PTZ00335 tubulin alpha chain; 100.0 4E-112 9E-117 874.9 34.7 442 1-442 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 3E-108 6E-113 847.4 33.4 429 1-439 1-429 (445)
5 cd02186 alpha_tubulin The tubu 100.0 2E-107 4E-112 839.4 32.7 434 2-435 1-434 (434)
6 PLN00220 tubulin beta chain; P 100.0 5E-107 1E-111 840.2 33.9 427 1-437 1-427 (447)
7 PLN00222 tubulin gamma chain; 100.0 4E-106 9E-111 830.8 34.0 432 1-440 2-446 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 7E-106 1E-110 825.1 31.4 423 2-432 1-431 (431)
9 cd02187 beta_tubulin The tubul 100.0 5E-105 1E-109 820.7 33.7 424 2-435 1-424 (425)
10 PTZ00387 epsilon tubulin; Prov 100.0 2E-104 3E-109 819.4 33.0 417 1-438 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 2E-102 3E-107 747.8 28.6 429 1-437 2-441 (448)
12 cd02189 delta_tubulin The tubu 100.0 1E-97 2E-102 769.8 32.1 412 4-433 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 1.4E-97 3E-102 753.9 29.4 379 2-435 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 8.7E-90 1.9E-94 701.3 30.6 382 3-434 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 2.2E-83 4.7E-88 614.1 18.7 406 1-429 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 3.6E-71 7.8E-76 532.7 15.0 346 45-438 7-352 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3E-64 6.6E-69 504.5 25.3 328 3-381 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 6.4E-49 1.4E-53 406.0 28.1 415 2-434 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 2.4E-50 5.2E-55 380.7 10.7 215 3-225 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 9.1E-37 2E-41 282.9 9.4 185 51-246 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 1.4E-33 3.1E-38 277.6 11.5 239 1-257 1-324 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 9.2E-32 2E-36 270.1 14.8 214 1-262 1-226 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 1.7E-26 3.8E-31 227.7 13.4 205 4-260 3-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 2.7E-25 5.9E-30 222.5 12.0 206 3-260 19-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 6.9E-25 1.5E-29 217.2 12.2 209 4-263 3-211 (304)
26 PF03953 Tubulin_C: Tubulin C- 99.9 9E-24 1.9E-28 182.6 9.6 125 263-392 1-125 (126)
27 PRK13018 cell division protein 99.9 2.9E-23 6.3E-28 208.7 13.6 268 4-337 31-300 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 3.3E-22 7E-27 182.4 12.1 149 84-244 17-180 (180)
29 PRK09330 cell division protein 99.8 5.1E-21 1.1E-25 192.7 11.7 207 3-260 15-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 1.1E-14 2.5E-19 123.4 4.9 69 2-78 1-73 (115)
31 COG0206 FtsZ Cell division GTP 99.4 3.8E-12 8.1E-17 126.1 12.2 152 98-263 70-221 (338)
32 smart00865 Tubulin_C Tubulin/F 98.3 2E-07 4.2E-12 79.1 2.3 114 248-392 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.6 0.00078 1.7E-08 68.3 13.1 103 94-196 100-219 (345)
34 PF06908 DUF1273: Protein of u 74.7 13 0.00029 33.9 7.4 109 114-241 27-136 (177)
35 PRK14484 phosphotransferase ma 69.8 4.6 9.9E-05 34.6 3.0 42 116-160 42-83 (124)
36 PF03610 EIIA-man: PTS system 66.9 6.9 0.00015 32.7 3.5 33 114-146 39-71 (116)
37 PLN02847 triacylglycerol lipas 64.7 19 0.00041 39.0 7.0 116 49-170 153-287 (633)
38 cd00006 PTS_IIA_man PTS_IIA, P 59.9 13 0.00028 31.5 4.0 32 115-146 40-71 (122)
39 TIGR00824 EIIA-man PTS system, 59.6 14 0.00029 31.2 4.0 32 115-146 41-72 (116)
40 PF12953 DUF3842: Domain of un 58.3 9 0.0002 32.9 2.6 28 143-170 6-34 (131)
41 PRK09461 ansA cytoplasmic aspa 57.0 35 0.00075 34.5 7.1 95 110-211 63-157 (335)
42 PRK13660 hypothetical protein; 49.8 72 0.0016 29.3 7.3 111 114-242 27-137 (182)
43 cd00741 Lipase Lipase. Lipase 49.5 24 0.00052 30.7 4.1 64 106-173 2-65 (153)
44 TIGR02364 dha_pts dihydroxyace 45.4 21 0.00046 30.5 3.0 41 116-159 42-84 (125)
45 PF00710 Asparaginase: Asparag 45.3 77 0.0017 31.6 7.4 94 110-211 54-148 (313)
46 cd00411 Asparaginase Asparagin 43.7 76 0.0017 31.8 7.1 94 110-211 60-155 (323)
47 cd00519 Lipase_3 Lipase (class 42.8 22 0.00048 33.3 3.0 64 103-170 99-162 (229)
48 TIGR02153 gatD_arch glutamyl-t 38.0 95 0.0021 32.2 6.9 91 110-207 120-211 (404)
49 TIGR00519 asnASE_I L-asparagin 35.3 99 0.0022 31.2 6.5 96 110-212 59-159 (336)
50 PRK04183 glutamyl-tRNA(Gln) am 32.8 1.3E+02 0.0029 31.3 7.0 90 110-207 133-223 (419)
51 smart00870 Asparaginase Aspara 31.6 1.4E+02 0.0031 29.8 6.9 96 111-211 58-155 (323)
52 PF01764 Lipase_3: Lipase (cla 31.5 16 0.00035 31.0 0.1 63 105-171 36-101 (140)
53 PF01713 Smr: Smr domain; Int 31.4 1.6E+02 0.0035 22.7 5.8 54 116-172 9-68 (83)
54 PF03283 PAE: Pectinacetyleste 31.2 1.2E+02 0.0026 31.0 6.3 52 107-163 132-183 (361)
55 PF12210 Hrs_helical: Hepatocy 30.6 30 0.00065 28.1 1.4 54 377-435 27-89 (96)
56 PF08259 Periviscerokin: Periv 29.7 24 0.00051 16.9 0.4 8 257-264 3-10 (11)
57 PRK15088 PTS system mannose-sp 28.8 68 0.0015 32.2 4.0 32 115-146 42-73 (322)
58 COG0572 Udk Uridine kinase [Nu 28.2 58 0.0012 30.8 3.1 27 137-164 9-35 (218)
59 COG0303 MoeA Molybdopterin bio 25.9 1.3E+02 0.0029 31.1 5.6 60 109-175 223-282 (404)
60 PF14824 Sirohm_synth_M: Siroh 25.8 80 0.0017 20.0 2.4 23 134-161 4-26 (30)
61 COG2156 KdpC K+-transporting A 25.0 1.1E+02 0.0025 28.0 4.3 80 69-153 46-134 (190)
62 COG1929 Glycerate kinase [Carb 23.9 1.5E+02 0.0033 30.2 5.3 82 112-210 216-301 (378)
63 PF02353 CMAS: Mycolic acid cy 22.9 1.2E+02 0.0025 29.7 4.3 65 100-171 28-93 (273)
64 PTZ00489 glutamate 5-kinase; P 22.5 3.2E+02 0.0069 26.6 7.3 49 157-207 87-135 (264)
65 PF03141 Methyltransf_29: Puta 22.5 1.6E+02 0.0034 31.5 5.3 34 133-175 116-149 (506)
66 PF06858 NOG1: Nucleolar GTP-b 22.0 1.8E+02 0.0039 21.5 4.0 35 135-169 17-53 (58)
67 KOG2369 Lecithin:cholesterol a 21.2 97 0.0021 32.6 3.5 57 98-160 146-206 (473)
68 PF02879 PGM_PMM_II: Phosphogl 20.6 75 0.0016 25.7 2.1 27 133-159 20-46 (104)
69 COG0159 TrpA Tryptophan syntha 20.4 2.7E+02 0.0058 27.2 6.1 76 120-214 161-241 (265)
70 COG4474 Uncharacterized protei 20.2 2.8E+02 0.006 25.1 5.6 94 103-203 12-107 (180)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.1e-130 Score=941.01 Aligned_cols=438 Identities=60% Similarity=1.060 Sum_probs=422.4
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++|.||||.++|..+...+ .+.++.++||+|.++++||||||+||+||+||+.+++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 99999999999999999999999999999999999765444 3568999999999999999999999999999999999
Q ss_pred cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
|+|+.+|+|++++.+++|+|||||+|+|.+|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||||.+.+|+|+|.+..++++|||||++|++++|.+++|+++++||.+|+++|.+.+++++|+|.++|++||++|+++|.
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||++|.||++|.+||+||||+||+.++|+|++...+..+++.++.++++++|+++|+|++|+|+.++|+++++++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (450)
|+..+++|++++.+++.|++..|++|+|+++++++|+.+|.. ..+.+.++|+|+|+|+|...|+++.++|++||+
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~ 393 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK 393 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999998832 334589999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccCccCccc
Q 013062 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEED 445 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~ 445 (450)
||||||||+++||||+||.||++++++|.++|++++++.-+++++
T Consensus 394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence 999999999999999999999999999999999998776555443
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=7e-114 Score=888.47 Aligned_cols=449 Identities=98% Similarity=1.501 Sum_probs=425.2
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|....+.......+..++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999998886543321111245789999999999999999999999999999999
Q ss_pred cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
++++++|+|++++.+++|+|||||+|||..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|.++|.+.++++.|+|.++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.++.||+++++||||||++||++++++|+++.....+.+++|.+|++++|++++++++++|+.++||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (450)
|++.+.++.+.+..++.+++..|++|+|+++++++|+++|...++..+.++++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888899999999999999999999988777776777789999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccCccCcccCCCC
Q 013062 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEEDYGEE 449 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~ 449 (450)
||||||||+++||||+||.||+++|++|+++|++++.+.++++-|+++|
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~ 449 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEE 449 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999999999998888888888776
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.1e-112 Score=874.92 Aligned_cols=442 Identities=95% Similarity=1.469 Sum_probs=417.2
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|....+.......+..++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999998887643322111245789999999999999999999999999999999
Q ss_pred cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999766799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++++.++|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (450)
|++.+.++.+.+..++.+++..|++|+|+++++++|.++|...+...+.+.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999999988777777767789999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccCccC
Q 013062 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 442 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~ 442 (450)
||||||||+++||||+||.||+++|++|+++|+++..+.++|
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999999997555444
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.8e-108 Score=847.42 Aligned_cols=429 Identities=43% Similarity=0.833 Sum_probs=407.8
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|.....++. ..+..++||+|+++++|+||||+||+||++|+.++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999988866443321 235678999999999999999999999999999999
Q ss_pred cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
++++.+|+|++++.+++|+|||||+|||..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999999766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.+|.|++++++||||||++||++++++|+.+.....++.+++.+|++++|++++++.+++|+.++|+|+++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (450)
|++.++++.+.+..++.++++.|++|+|+++++++|.++|.. .++++++++|+|+|..+|+++.++|++||+
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~--------~~~s~~~lsNstsi~~~~~~i~~~f~~m~~ 390 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKG--------LKMSVTFIGNSTAIQEMFRRVGEQFTAMFR 390 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcC--------ccceEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999888888999999999999999999988753 268899999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccC
Q 013062 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 439 (450)
||||||||+++||||+||.||+++|++|+++|+++....
T Consensus 391 rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987554
No 5
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2e-107 Score=839.41 Aligned_cols=434 Identities=89% Similarity=1.430 Sum_probs=411.0
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013062 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+++++||+++++|....+.......+.+++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999988865443221113457899999999999999999999999999999998
Q ss_pred ccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhc
Q 013062 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~y 161 (450)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccc
Q 013062 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++++.+++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccC
Q 013062 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (450)
Q Consensus 242 ~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (450)
+||+|.++.|+++++++|||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|+.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhcc
Q 013062 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~r 401 (450)
++.++++.+.+..++.++...|++|+|+++++++|+++|...+...+.+.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999999987777667777899999999999999999999999999999
Q ss_pred ccceeccccCCCCcchHHHHHHHHHHHHHHHHHh
Q 013062 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 435 (450)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 6
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=4.8e-107 Score=840.24 Aligned_cols=427 Identities=42% Similarity=0.839 Sum_probs=405.6
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|......+. ..+..++||+|.++++|+||||+||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999888766443322 235678999999999999999999999999999999
Q ss_pred cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
++++.+|+|++++++++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|++.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|.++|++||+.|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999998767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.++.++.+++++|||||++||+.++++|+.+.....++++++.+++++++++++++++++|+.++|+++++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999987767788999999999999999999999999999999999999
Q ss_pred CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (450)
|++.+.++.+.+..++.++++.|++|+|+++++++|.++|... ++++++|+|+|+|..+|++++++|++||+
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~ 390 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888899999999999999999887532 67899999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcc
Q 013062 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA 437 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~ 437 (450)
||||||||+++||||+||.||+++|++|+++|+++..
T Consensus 391 rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~ 427 (447)
T PLN00220 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427 (447)
T ss_pred cCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988764
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=4e-106 Score=830.77 Aligned_cols=432 Identities=32% Similarity=0.591 Sum_probs=400.1
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|....+.+ ...+..++||+|+++++|+|||||||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999988886643322 1245789999999999999999999999999999999
Q ss_pred cccccccCCceeecccc--cccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhh
Q 013062 81 GTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~ 158 (450)
++++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88889999999999986 69999999965 6999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCCC-CCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhc
Q 013062 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (450)
Q Consensus 159 d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (450)
|+||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 999999999999999863 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhccCCCCCcccccccccccccccc-cccccccCHHHHHHHhcCCCCCCcccCCCC-----Cc
Q 013062 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GK 311 (450)
Q Consensus 238 ~t~~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~ 311 (450)
+|+++||||.+|.||+++++||||||++||++++++|+.... ...++..++.++++++|++++++..++|+. ++
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997653 345677889999999999999999998887 99
Q ss_pred chhhcccccCccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHH
Q 013062 312 YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 391 (450)
Q Consensus 312 ~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l 391 (450)
|||+++++||++.+.++.+.+..++.++++.|++|+|+++++++|.++|...+ +++.++++|+|+|+|..+|+++
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i 393 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIRHLFSKC 393 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999998876422 1367899999999999999999
Q ss_pred HHHHHHhhccccceeccccCCCC----cchHHHHHHHHHHHHHHHHHhcccCc
Q 013062 392 DHKFDLMYAKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGAESA 440 (450)
Q Consensus 392 ~~~~~~m~~rkAflH~Y~~~Gme----e~eF~Ea~~~l~~l~~~Y~~~~~~~~ 440 (450)
.++|++||+||||||||+++||+ ++||.||+++|++|+++|++++..+-
T Consensus 394 ~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y 446 (454)
T PLN00222 394 LSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDY 446 (454)
T ss_pred HHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999993 89999999999999999998874433
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=6.5e-106 Score=825.12 Aligned_cols=423 Identities=36% Similarity=0.669 Sum_probs=398.2
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013062 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+++++||+++++|..+.+.+ ...+..++||+|+++++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999998887644322 13457899999999999999999999999999999999
Q ss_pred ccccccCCceeecccc--cccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhh
Q 013062 82 TYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d 159 (450)
+++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 8888999999999987 99999999965 69999999999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEecCCCC-CCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcc
Q 013062 160 DYGKKSKLGFTVYPSPQV-STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238 (450)
Q Consensus 160 ~yp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 238 (450)
+||++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|.++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998753 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccchhhhhccCCCCCcccccccccccccccc-cccccccCHHHHHHHhcCCCCCCcccCC-CCCcchhhc
Q 013062 239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACC 316 (450)
Q Consensus 239 t~~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~ 316 (450)
|+++||||.+|.|++++++||||||++||++++++|+.+.. ...++..+|.+|++.+++++++|+.++| +.++|+|++
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999999877 5778889999999999999999999999 889999999
Q ss_pred ccccCccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHH
Q 013062 317 LMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFD 396 (450)
Q Consensus 317 ~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~ 396 (450)
+++||++.+.++.+.+.+++.+..+.|++|+|+++++++|.++|...++ .+.++++++|+|+|.++|+++.++|+
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~ 392 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFD 392 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999999999999988864332 25789999999999999999999999
Q ss_pred HhhccccceeccccCCCC---cchHHHHHHHHHHHHHHH
Q 013062 397 LMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 432 (450)
Q Consensus 397 ~m~~rkAflH~Y~~~Gme---e~eF~Ea~~~l~~l~~~Y 432 (450)
+||+||||||||+++||| ++||.||+++|++|+++|
T Consensus 393 ~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 393 KLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999 999999999999999998
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=4.5e-105 Score=820.66 Aligned_cols=424 Identities=43% Similarity=0.842 Sum_probs=401.9
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013062 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+.+++||+++++|......+. ..+..++||+|+.+++|+||||+||+||++|+.++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDL--QLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccc--cccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 79999999999999999999999999999888765433221 2356789999999999999999999999999999988
Q ss_pred ccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhc
Q 013062 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~y 161 (450)
+++.+|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccc
Q 013062 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999987666899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccC
Q 013062 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (450)
Q Consensus 242 ~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (450)
+||||.+|.|+.++++||||||++||++++++|+++.....++.+++.+|++++|++++++..++|+.++|+++++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhcc
Q 013062 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~r 401 (450)
++.+.++.+.+.+++.+.+..|++|+|+++++++|.++|.. .++++++++|+|+|..+|++++++|++||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~--------~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~k 390 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG--------LKMSATFIGNSTAIQELFKRISEQFTAMFRR 390 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCC--------cceeEEEecCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888889999999999999999987753 2688999999999999999999999999999
Q ss_pred ccceeccccCCCCcchHHHHHHHHHHHHHHHHHh
Q 013062 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 435 (450)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 391 kAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 391 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999976
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.5e-104 Score=819.36 Aligned_cols=417 Identities=32% Similarity=0.615 Sum_probs=390.1
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccccccccCC-----CC--ccccceeeeCCCC
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHG-IQPDGQMPSDKTVGGGDDAFNTFFSETG-----AG--KHVPRAVFVDLEP 72 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~-~~~~~~~~~~~~~~~~~~~~~~~f~e~~-----~~--~~~pRallvD~e~ 72 (450)
|||||+||+||||||||.+||+++++||+ ++++|.. .+.+++||++.+ .+ +|+||||+||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 6666532 346789998532 23 4999999999999
Q ss_pred ceeecccccccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhH
Q 013062 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152 (450)
Q Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~ 152 (450)
++|++++.++++.+|+|++++++++|+||||++|||..|++..|+++|+||+++|+||++|||+++||++||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCC-----------
Q 013062 153 LLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER----------- 221 (450)
Q Consensus 153 l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~----------- 221 (450)
|+|.|+|+||++.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 99999999999999999999985 578899999999999999999999999999999999988777663
Q ss_pred ----------------CCccchhHHHHHHhhccccccccCCCCccchhhhhccCCCCCcccccccccccccccccccccc
Q 013062 222 ----------------PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQ 285 (450)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~ 285 (450)
+.|+++|++||++|+++|.++||+|.+|.|++++.+||||||++||++++++|+.+.....+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 7899999999999999999999999999999999999999999999999999998877777888
Q ss_pred cCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccCccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCC
Q 013062 286 LSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 (450)
Q Consensus 286 ~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~ 365 (450)
.+|.+|+.++|+++++|+.++|+.++|+++++++||+..+.++.+.+.+++. ...|++|+|+++++++|.++|...
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~-- 386 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQ-- 386 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCC--
Confidence 9999999999999999999999999999999999999889999988887764 489999999999999999987643
Q ss_pred CCcccccceeEeecCCchhHHHHHHHHHHHHHhhccccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccc
Q 013062 366 GDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 (450)
Q Consensus 366 ~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 438 (450)
++++++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|++++..
T Consensus 387 ------~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 387 ------PYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred ------ceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999999999999999 7999999999999999999999999733
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=1.5e-102 Score=747.81 Aligned_cols=429 Identities=34% Similarity=0.630 Sum_probs=401.7
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
||||||||+||||||||.+||++||.||+|.++|..+.... ++.++.++||++..++.|+|||||||+||+||+.+.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 58999999999999999999999999999999998765444 3578999999999999999999999999999999999
Q ss_pred cccccccCCceeecc--cccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhh
Q 013062 81 GTYRQLFHPEQLISG--KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~ 158 (450)
++++.+|+|+|++.. .+|||||||.|| .+|+++.|+++|.|+|++|.||+|+||+++||++||||||+||.|+|.|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 999999999999854 468999999997 55999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCCC-CCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhc
Q 013062 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (450)
Q Consensus 159 d~yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (450)
|+||||.+.+++|||... .++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.++.|+|.++|++||..|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999863 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhccCCCCCcccccccccccccccccccc--cccCHHHHHHHhcCCCCCCcccCC---CCCcc
Q 013062 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDP---RHGKY 312 (450)
Q Consensus 238 ~t~~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~--~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ 312 (450)
.|.++||||+++.+|..+...|+|+|++||+++++.|++....... +.-++.+.++.++.++++|.+..+ .+..|
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 9999999999999999999999999999999999999998775544 677888999999999999987665 33589
Q ss_pred hhhcccccCccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHH
Q 013062 313 MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID 392 (450)
Q Consensus 313 ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 392 (450)
++...++.|.+.+..+...+.+++.++...|++|.|.++.+++....|+.... ++.|+.+|+|+|+|..+|++++
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~ 393 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERIL 393 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888775543 4789999999999999999999
Q ss_pred HHHHHhhccccceeccccCCCCcc---hHHHHHHHHHHHHHHHHHhcc
Q 013062 393 HKFDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGA 437 (450)
Q Consensus 393 ~~~~~m~~rkAflH~Y~~~Gmee~---eF~Ea~~~l~~l~~~Y~~~~~ 437 (450)
.+|++|++||||||+|+++||+++ ||.|+++.+++|+++|..+.+
T Consensus 394 ~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~ 441 (448)
T KOG1374|consen 394 GQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ 441 (448)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999888 999999999999999998854
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1e-97 Score=769.84 Aligned_cols=412 Identities=26% Similarity=0.468 Sum_probs=377.9
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013062 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (450)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~~ 83 (450)
||+||+||||||||.+||+++++||+++++|.... ..+..++||+|..+++|+||||+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~------~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKY------ERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccc------cccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 89999999999999999999999999987765421 245678999999999999999999999999999998654
Q ss_pred --ccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhc
Q 013062 84 --RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 84 --~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~y 161 (450)
+++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccc
Q 013062 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++.+.+++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.+++..++|.++|++||+.|+++|+|
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999976 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-C-------CCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhc---CCCCCCcc------
Q 013062 242 LRF-D-------GALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAF---EPSSMMAK------ 304 (450)
Q Consensus 242 ~r~-~-------~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~------ 304 (450)
.|+ + |..+.++++++++|||||++||++++++|+++.....++.++|.+|+++++ .+++++..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 987 5 336889999999999999999999999999987777789999999999865 56665544
Q ss_pred -------------cCCCCCcchhhcccccCccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccc
Q 013062 305 -------------CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371 (450)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 371 (450)
++++.++|+++++++||+..+.++...+ ++...|++|+|+++++++|.++|... +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~------~~ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFS------KY 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcC------Cc
Confidence 4577899999999999988777776432 46688999999999999998876531 23
Q ss_pred cceeEeecCCchhHHHHHHHHHHHHHhhccccceeccccCCCCcchHHHHHHHHHHHHHHHH
Q 013062 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433 (450)
Q Consensus 372 ~~s~~~l~Nst~i~~~l~~l~~~~~~m~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~ 433 (450)
++++++++|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++|+++|+
T Consensus 384 ~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.4e-97 Score=753.92 Aligned_cols=379 Identities=36% Similarity=0.706 Sum_probs=362.3
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccc
Q 013062 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+.+++|| |+||+|+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 699999999999999999999999886 679999999999999999998
Q ss_pred ccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhc
Q 013062 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~y 161 (450)
+++++|+|++++.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccc
Q 013062 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++.+++++|+|+.. +++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|++
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 999999999999985 788999999999999999999999999999997 6999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccC
Q 013062 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (450)
Q Consensus 242 ~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (450)
+||||.+|.|++++.++|||||++||++++++|+++.....++..++.+|++.+++++++|+.++|+.++|+++++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhcc
Q 013062 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 401 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~r 401 (450)
+..+.++.+.+.+++.+ ..|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+|
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTsI~~~f~~i~~~f~~mf~k 345 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTCIKGTFTELKERFMKLYKR 345 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccHHHHHHHHHHHHHHHHHhc
Confidence 99999998888877665 67999999999999999877532 678999999999999999999999999999
Q ss_pred ccceeccccCCCCcchHHHHHHHHHHHHHHHHHh
Q 013062 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 402 kAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 435 (450)
|||||||+++||||+||.||+++|++++++|+++
T Consensus 346 rAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 346 KAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred ccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=8.7e-90 Score=701.25 Aligned_cols=382 Identities=49% Similarity=0.893 Sum_probs=362.8
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013062 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~ 82 (450)
|||+||+||||||||.+||+.+ |+||+||++++.++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999983 99999999999999988
Q ss_pred cccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcC
Q 013062 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp 162 (450)
.+.+|+|++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccccc
Q 013062 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
++.+++++|+|+...+++++++||++|++++|.+++|++++++|++|.++|.+.+.+..++|.++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999986556899999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccCc
Q 013062 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (450)
Q Consensus 243 r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (450)
|++|.++.|+++++++|||||++||++++++|+++.....+...++.+++++++++++++..++++.++|+++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998776677889999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhccc
Q 013062 323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 402 (450)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~rk 402 (450)
..+.++.+.+.+++.+.... +|+|+++++++|.++|. .+.++++++++|+|+|..+|++++++|++||+||
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~r 350 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRK 350 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999998888887665443 89999999999998875 0226889999999999999999999999999999
Q ss_pred cceeccccCCCCcchHHHHHHHHHHHHHHHHH
Q 013062 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (450)
Q Consensus 403 AflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~ 434 (450)
||||||+++||||+||.||+++|++|+++|++
T Consensus 351 Aflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 351 AFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred cchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999974
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=2.2e-83 Score=614.11 Aligned_cols=406 Identities=86% Similarity=1.391 Sum_probs=388.2
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|||||.|++||.|.|||+..|+.+|.||++.++|..+.+++.....+..+.||.++..++++||+++||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999987765543344578899999999999999999999999 999999
Q ss_pred cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
|.|+.+|||++++.++++++||+|+|+|..|+|+.|..+++||+.++.|..||||.++|+.|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
|+||..+.++++|....+..+++|||++|+.+...+++|+.+++||.+++.+|++.+.+.+|+|.++|++|+++++++|.
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||.|.+|.||.+|.+||+|+| + ++|+.+.....++++++.+++...|++.++|++|||+.++|.++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999998888999999999999999999999999999999999999999
Q ss_pred CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 400 (450)
|++.|+++..++..+|.+.++.|++ ..++++.+++..+..|||+|+|+|++...++-.+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 9999999999999999998888876 2346677888899999999999999999999999999999
Q ss_pred cccceeccccCCCCcchHHHHHHHHHHHH
Q 013062 401 KRAFVHWYVGEGMEEGEFSEAREDLAALE 429 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~ 429 (450)
||||+|||.++||||+||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999998763
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=3.6e-71 Score=532.73 Aligned_cols=346 Identities=41% Similarity=0.823 Sum_probs=330.0
Q ss_pred CCCccccccccCCCCccccceeeeCCCCceeecccccccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHH
Q 013062 45 GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124 (450)
Q Consensus 45 ~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~ 124 (450)
+..+++++|.+...++|+||+|+||++|++++.+.++++...|+|++ +++| .|+|..|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 35689999999988999999999999999999999999999999999 4433 8899999987777
Q ss_pred HhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEe
Q 013062 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLL 204 (450)
Q Consensus 125 ~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~ 204 (450)
.||++||||+.||++||||||.|++++..|+++||.+.+.+++|.|+.. ++.+++|||+.|++..|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 9999999999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred cchhhHhhhhccCCCCCCCccchhHHHHHHhhccccccccCCCCccchhhhhccCCCCCccccccccccccccccccccc
Q 013062 205 DNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE 284 (450)
Q Consensus 205 ~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~ 284 (450)
||++|+++|.+.+.+..+. ++|..+||+|++|.|+.++..|++|||++||+.++++|++.....+++
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999988877 899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccCccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCC
Q 013062 285 QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 364 (450)
Q Consensus 285 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~ 364 (450)
.++++++++++|+.+|++..++ ||+++.++|| +.+++++.+..++.|++..|++|+|+++|+++|..||.++
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl- 285 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL- 285 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc-
Confidence 9999999999999999999887 9999999999 8899999999999999999999999999999999999876
Q ss_pred CCCcccccceeEeecCCchhHHHHHHHHHHHHHhhccccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccc
Q 013062 365 GGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 (450)
Q Consensus 365 ~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 438 (450)
.++.+.++|+|+|..+|+++.++|..||+||||||||+++||||+||+||..++++|+.+|+++.++
T Consensus 286 -------kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~ 352 (369)
T KOG1375|consen 286 -------KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQD 352 (369)
T ss_pred -------cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999999999999999999999999999999999999533
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3e-64 Score=504.52 Aligned_cols=328 Identities=45% Similarity=0.820 Sum_probs=304.0
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013062 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~ 82 (450)
||++||+||||||||.+||+.+ |+||+|+++++.++.++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999871 99999999999999888
Q ss_pred cccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcC
Q 013062 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp 162 (450)
.+.+|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|||+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccccc
Q 013062 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
++++++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..+.|.++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999997533 689999999999999999999999999999999998888889999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccCc
Q 013062 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (450)
Q Consensus 243 r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (450)
|++|.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.+++..+++..++++++++++||.
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987666666788999999999999999988888889999999999999
Q ss_pred cChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCC
Q 013062 323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 381 (450)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Ns 381 (450)
.+.+++.+....++.+..+. +|+|+++++++|..++.. ..+.++++++|+
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~Ns 328 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPAS-------EHKVSALLLSNS 328 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCC-------CcCeEEEEeccC
Confidence 99999988888887765544 899999999999877641 126788999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=6.4e-49 Score=405.97 Aligned_cols=415 Identities=19% Similarity=0.240 Sum_probs=291.0
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCC----CCccccceeeeCCCCceeec
Q 013062 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDE 77 (450)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pRallvD~e~~~i~~ 77 (450)
|||||||+||++|+||+||||. ||..+.++...+ ....+++++|+++. ..+|+||+|++|++++....
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNL--QEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhh--hhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999999 888886553321 13567899999964 56999999999999986644
Q ss_pred cccccc----------------ccccCCceeeccc-----ccccCCCcccccc---cChhhHHHHHHHHHHHhhhcCCCC
Q 013062 78 VRTGTY----------------RQLFHPEQLISGK-----EDAANNFARGHYT---IGKEIVDLCLDRIRKLADNCTGLQ 133 (450)
Q Consensus 78 ~~~~~~----------------~~~~~~~~~~~~~-----~g~gnn~a~G~~~---~g~~~~~~~~d~ir~~~E~cD~lq 133 (450)
.+.+.+ +.+|||++++... .+.+++|++|+-. .+.+..|+++|+||+++|+||++|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 332221 3569999998653 2555677776532 355678999999999999999999
Q ss_pred ceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCC----CCcchhhhHHHHHHHHhhccCCeeeEecch-h
Q 013062 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----STSVVEPYNSVLSTHSLLEHTDVAVLLDNE-A 208 (450)
Q Consensus 134 gf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~-~ 208 (450)
|||+++|++||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.+++|+++|+.-. .
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999997532 257899999999999999999999999843 4
Q ss_pred hHhhh-----hccCCCCCCCccchhHHHHHHhhccccccccCCCCccchhhhhccCCCCCcccccccccc-ccccccccc
Q 013062 209 IYDIC-----RRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA-PVISAEKAY 282 (450)
Q Consensus 209 l~~~~-----~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~-Pl~~~~~~~ 282 (450)
.|... ...+.++.....+..+++|.+|.++|.|+|.++.. .+|.+++..|.+..| |+...+.+ |+-..
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~---- 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV---- 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC----
Confidence 44432 12234455667788999999999999999999765 579999999987666 66654443 43221
Q ss_pred ccccCHHHHHHHhcCCC--CCCcccCCCCCcchhhcccccCccCh-------------------hhHHHHHHhhhccC--
Q 013062 283 HEQLSVAEITNSAFEPS--SMMAKCDPRHGKYMACCLMYRGDVVP-------------------KDVNAAVATIKTKR-- 339 (450)
Q Consensus 283 ~~~~t~~~l~~~~~~~~--~~~~~~~~~~~~~ls~~~~~RG~~~~-------------------~~~~~~~~~~~~~~-- 339 (450)
..-.+.++.+..-... .++..-.+...++....+++||-... ..+.+.++......
T Consensus 306 -~~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~ 384 (493)
T cd06060 306 -GGQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYP 384 (493)
T ss_pred -CCCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccC
Confidence 1124444444431111 12211113346788999999994310 00111111111100
Q ss_pred ---cccccc----cCCCCceeEEec-cCCccC------CCCCc--ccccceeEeecCCchhHHHHHHHHHHHHHhhcccc
Q 013062 340 ---TIQFVD----WCPTGFKCGINY-QPPTVV------PGGDL--AKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRA 403 (450)
Q Consensus 340 ---~~~f~~----w~p~~~~~~~~~-~~~~~~------~~~~~--~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~rkA 403 (450)
+...+. -+|.+|..-++. +...+. +.... ...-..++.|.|++++...|+.+..++.|+--+|
T Consensus 385 ~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r- 463 (493)
T cd06060 385 GSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR- 463 (493)
T ss_pred CcchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh-
Confidence 000000 011222211110 000000 00000 0011234568999999999999999999999988
Q ss_pred ceeccccCCCCcchHHHHHHHHHHHHHHHHH
Q 013062 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (450)
Q Consensus 404 flH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~ 434 (450)
+|.|.+.|+|+|||.|++++|.++.++|++
T Consensus 464 -~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 464 -KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred -hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=2.4e-50 Score=380.73 Aligned_cols=215 Identities=47% Similarity=0.872 Sum_probs=201.0
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013062 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~ 82 (450)
|||+||+||||||||.+||+++++||+++++... .....+.++||++...++|+||+|+||+|+++++.++.++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKS------QYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSS------STTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccccc------ccccccccceeeeccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999877211 1246678999999999999999999999999999999888
Q ss_pred cccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcC
Q 013062 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp 162 (450)
.+++|++++++.+++|+|+||+.||+..|+++.++++|+||+++|+||.+|||+++||+|||||||+++.|++.||++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCcc
Q 013062 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 225 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~ 225 (450)
++++++++|+|+. .+.++++||++++|++|.+++|+++++||++|.++|.+.++++.|+|.
T Consensus 155 ~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 155 KKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp TSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999994 388999999999999999999999999999999999999998887775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=9.1e-37 Score=282.93 Aligned_cols=185 Identities=40% Similarity=0.677 Sum_probs=171.4
Q ss_pred cccccCCCCccccceeeeCCCCceeecccccccccccCCceeecccccccCCCcccccc-----cChhhHHHHHHHHHHH
Q 013062 51 TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT-----IGKEIVDLCLDRIRKL 125 (450)
Q Consensus 51 ~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~-----~g~~~~~~~~d~ir~~ 125 (450)
++|.++ ++.||+|++|+++++++.+..++.+..|++.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 456664 68899999999999999988777778899999988999999999999998 7999999999999999
Q ss_pred hhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEec
Q 013062 126 ADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLD 205 (450)
Q Consensus 126 ~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~ 205 (450)
+|+| ++|+++||++||||||+++.+++.++ +||+.. ++++|+|. ..|..+++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999995 36889999999999999999999999999
Q ss_pred chhhHhhhhccCCCCCCCccchhHHHHHHhhccccccccCC
Q 013062 206 NEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 246 (450)
Q Consensus 206 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 246 (450)
|++|.+.|.+.+.+ .+.|.++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 77999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=1.4e-33 Score=277.57 Aligned_cols=239 Identities=23% Similarity=0.337 Sum_probs=176.5
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc-ccccccCC----CCccccceeeeCCCCcee
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAF-NTFFSETG----AGKHVPRAVFVDLEPTVI 75 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~-~~~f~e~~----~~~~~pRallvD~e~~~i 75 (450)
||||+|||+|+.+|++|+||||+ ||..+.......... ..... ||+|+.++ ..+|+||+|++|++..+.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~--Qea~l~~~~d~~~~~----~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g 74 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQ--QEAYLGLATDSEEPP----GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELG 74 (483)
T ss_pred CceEEEEEeeccccchhhhhcch--hhHhhccCCcccCCh----hhcCcchhhhhccccccCceeeccceeEEecCcccc
Confidence 99999999999999999999999 887765433221111 12223 89999874 359999999999999765
Q ss_pred eccccccc-------------------------------------------------------------------ccccC
Q 013062 76 DEVRTGTY-------------------------------------------------------------------RQLFH 88 (450)
Q Consensus 76 ~~~~~~~~-------------------------------------------------------------------~~~~~ 88 (450)
.....+.+ +..||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yH 154 (483)
T KOG2530|consen 75 TLKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYH 154 (483)
T ss_pred ccccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcC
Confidence 22111100 16789
Q ss_pred CceeecccccccCCCcccccccChh------hHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcC
Q 013062 89 PEQLISGKEDAANNFARGHYTIGKE------IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 89 ~~~~~~~~~g~gnn~a~G~~~~g~~------~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp 162 (450)
|+++...+..--+--|.+.|..|.+ ..+++.|+||.++|+||.+|||++..++.+||| |+++.++|.|+|||+
T Consensus 155 p~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys 233 (483)
T KOG2530|consen 155 PRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYS 233 (483)
T ss_pred ccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhc
Confidence 9988754432222222344455554 458899999999999999999999999999996 999999999999999
Q ss_pred CcceeEEEEecCCC-CCC---cchh---hhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHh
Q 013062 163 KKSKLGFTVYPSPQ-VST---SVVE---PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVI 235 (450)
Q Consensus 163 ~~~i~~~~v~P~~~-~~~---~~~~---~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i 235 (450)
++.+.++++.|... .++ .+-. ..|.++++.+|.+.|++++|+.--. .++ ...+..+++|.++
T Consensus 234 ~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ 302 (483)
T KOG2530|consen 234 KKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAF 302 (483)
T ss_pred CCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhc
Confidence 99999999988432 222 2222 5789999999999999999984211 111 3447789999999
Q ss_pred hccccccccCCCCccchhhhhc
Q 013062 236 SSLTASLRFDGALNVDVTEFQT 257 (450)
Q Consensus 236 ~~~t~~~r~~~~~~~~l~~l~~ 257 (450)
.++|.|.|..++.+..+.++.+
T Consensus 303 ds~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 303 DSITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccccceecchhHHHHHHHHH
Confidence 9999999998885555555443
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=9.2e-32 Score=270.06 Aligned_cols=214 Identities=21% Similarity=0.298 Sum_probs=187.0
Q ss_pred CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~ 80 (450)
|+ |..|.+|+||+.|-+++++. + ...+.+|+||+|+||+++..++.+..
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~----------~--------------------~~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH----------D--------------------KRSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh----------C--------------------CCcCCccceeEEEEECCHHHHHhhhc
Confidence 54 78899999999999999876 0 00123588999999999999887754
Q ss_pred cccccccCCceeecccc-----cccCCCcccccccChhhHHHHHHHHHHHhhhcCC--CCceeEEeecCCCccccchhHh
Q 013062 81 GTYRQLFHPEQLISGKE-----DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLL 153 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~i~~sl~GGtGSG~~s~l 153 (450)
...|+.++.+++ |+|+||. .|+++.++..|.||+++|.||. +|+|++++|++||||||+++.|
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~i 119 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVL 119 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHH
Confidence 346777777764 6677764 4789999999999999999997 9999999999999999999999
Q ss_pred HHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHH
Q 013062 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQ 233 (450)
Q Consensus 154 ~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~ 233 (450)
++.++++|| +++++++++|+.. +..+++||+++++++|.+++|.++++||++|.+.+.. + .+.|.++|++||+
T Consensus 120 ae~lke~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~ 192 (349)
T cd02202 120 AKELKERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIAR 192 (349)
T ss_pred HHHHHHhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHH
Confidence 999999999 8899999999874 4589999999999999999999999999999998742 2 3789999999999
Q ss_pred Hhhcccccccc-----CCCCccchhhhhccCCCC
Q 013062 234 VISSLTASLRF-----DGALNVDVTEFQTNLVPY 262 (450)
Q Consensus 234 ~i~~~t~~~r~-----~~~~~~~l~~l~~~L~p~ 262 (450)
.|..++.+.|| +|.+|.|++|+.++|.+.
T Consensus 193 ~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 193 RIGLLLRAGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred HHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC
Confidence 99999999999 999999999999999765
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=1.7e-26 Score=227.68 Aligned_cols=205 Identities=18% Similarity=0.270 Sum_probs=169.3
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013062 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (450)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~~ 83 (450)
|..|.+|+||+.+-.++++. ++ .+ .+.+.||++...++.+... .
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~---~~~iainTd~~~L~~~~a~-~ 46 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EG---RSAVAVNTDAQDLLGLEAE-N 46 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC---------------------------CC---ccEEEEECcHHHHhcCCCC-c
Confidence 77899999999999999765 00 01 4789999999887766421 2
Q ss_pred ccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCC
Q 013062 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~ 163 (450)
+-++.++ .+...|+|+||+.| +++.++.++.||+.+|.||. |++++++|||||||+++.+++.+++.|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 2222222 12345899998764 68899999999999999994 8999999999999999999999999996
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccccc
Q 013062 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (450)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (450)
..+++.++|+ ..|..+++||+.+++++|.+++|.++++||++|.++|.+ +.+. ..|+.+|++|++.+.++|..+|
T Consensus 116 -~~~~vvt~Pf--~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 116 -LTVAVVTLPF--SDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred -CEEEEEeCCc--ccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 4444455555 457789999999999999999999999999999999976 7764 5999999999999999999999
Q ss_pred cCCCCccchhhhhccCC
Q 013062 244 FDGALNVDVTEFQTNLV 260 (450)
Q Consensus 244 ~~~~~~~~l~~l~~~L~ 260 (450)
+||.+|.|++++.+.|-
T Consensus 191 ~~g~invD~~dv~~~l~ 207 (303)
T cd02191 191 IEGEINVDFADVKNVMD 207 (303)
T ss_pred cCCcccCCHHHHHHHhc
Confidence 99999999999988773
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=2.7e-25 Score=222.53 Aligned_cols=206 Identities=15% Similarity=0.280 Sum_probs=165.6
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013062 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~ 82 (450)
-|..|.+|+||+.+-+++++. ++ .-...+.+|++...++.+...
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a~- 62 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKAD- 62 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCCC-
Confidence 377899999999999998765 00 014678899988766555421
Q ss_pred cccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcC
Q 013062 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp 162 (450)
.+.++.++ .+...|+|++|+. |+++.++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+
T Consensus 63 ~ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~ 131 (349)
T TIGR00065 63 KKILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG 131 (349)
T ss_pred eEEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC
Confidence 12222222 1223488999775 6799999999999999999985 999999999999999966666655 54
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccccc
Q 013062 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
+..+++.++|+. .|..+++||+.+++++|.+++|.++++||++|.++|.+ +.+.. .|+.+|.+|++.+.++|.++
T Consensus 132 -~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~i 206 (349)
T TIGR00065 132 -ALTVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELI 206 (349)
T ss_pred -CCEEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhh
Confidence 455555556664 57789999999999999999999999999999999977 77744 99999999999999999999
Q ss_pred ccCCCCccchhhhhccCC
Q 013062 243 RFDGALNVDVTEFQTNLV 260 (450)
Q Consensus 243 r~~~~~~~~l~~l~~~L~ 260 (450)
|+||.+|.|+.++.+-|-
T Consensus 207 r~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 207 TKPGLINIDFADVRAVMS 224 (349)
T ss_pred ccCCcCcCCHHHHHHHHh
Confidence 999999999999988774
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=6.9e-25 Score=217.23 Aligned_cols=209 Identities=14% Similarity=0.258 Sum_probs=170.2
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013062 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (450)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~~ 83 (450)
|..|.+|+||+.+-+++++. ++ .+ ...+.+|++...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~---~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EG---VEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCC-Cc
Confidence 67899999999999999775 00 00 467899998887766543 22
Q ss_pred ccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCC
Q 013062 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~ 163 (450)
+.++.++. +...|+|+||+.| ++..++..|.||+.+|.||.+ +|++|+|||||||+++.+++..++ |+
T Consensus 47 k~~ig~~~--t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e-~g- 114 (304)
T cd02201 47 KIQLGKEL--TRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKE-MG- 114 (304)
T ss_pred EEEcCCCC--CCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHH-cC-
Confidence 33333321 3345899998865 578889999999999999985 999999999999999997776665 54
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccccc
Q 013062 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (450)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (450)
+..+++.++|+. .|..+++||+.+++++|.+++|.++++||++|.+.|.+.+.+.. .|+.+|++|++.+.++|.++|
T Consensus 115 ~~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 115 ALTVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CCEEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 356666667765 46779999999999999999999999999999999987777766 899999999999999999999
Q ss_pred cCCCCccchhhhhccCCCCC
Q 013062 244 FDGALNVDVTEFQTNLVPYP 263 (450)
Q Consensus 244 ~~~~~~~~l~~l~~~L~p~p 263 (450)
++|.+|.|+.++.+.|-.-.
T Consensus 192 ~~g~invD~~dv~~vl~~~G 211 (304)
T cd02201 192 KPGLINLDFADVKTVMKNKG 211 (304)
T ss_pred cCccccCCHHHHHHHhccCC
Confidence 99999999999999886433
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=9e-24 Score=182.63 Aligned_cols=125 Identities=58% Similarity=1.017 Sum_probs=113.5
Q ss_pred CcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccCccChhhHHHHHHhhhccCccc
Q 013062 263 PRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ 342 (450)
Q Consensus 263 p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 342 (450)
||+||++++++|+.......++..++.+|++++|+++|+|++++|+.++|||+++++||+++++++.+.+.+++.+.++.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHH
Q 013062 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID 392 (450)
Q Consensus 343 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~ 392 (450)
|++|+|+++|+++|+++|...+.+ ..++++|+|+|+|.+.|+++.
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~ 125 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRIS 125 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhc
Confidence 999999999999999999877643 567999999999999999986
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=2.9e-23 Score=208.74 Aligned_cols=268 Identities=19% Similarity=0.298 Sum_probs=192.3
Q ss_pred EEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeeccccccc
Q 013062 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (450)
Q Consensus 4 ii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~~ 83 (450)
|..|.+|+||+.+-.++++. ++ .+ ...|.|+++...+..+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 77899999999999999764 00 01 3668999988766654332 1
Q ss_pred ccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCC
Q 013062 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~ 163 (450)
+.++.++ .+...|+|++|..| ++..++..|.||+.+|.||. |+|++++|||||||+++.|++.+++. +
T Consensus 75 ki~iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake~-g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKEQ-G- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHHc-C-
Confidence 2222221 12334788886664 57788889999999999997 89999999999999999999999974 3
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccccc
Q 013062 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (450)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (450)
...+++++.|+. .+...+..|+.+++++|.+++|.++++||++|.++| ..+.+.. .|+.+|++|++.+.++|.++|
T Consensus 143 ~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 556788899986 366788999999999999999999999999999999 6666654 899999999999999999999
Q ss_pred cCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhcccccC--
Q 013062 244 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG-- 321 (450)
Q Consensus 244 ~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG-- 321 (450)
+||.+|.|+.++.+-|-- ...-++..+.+. ..-...+.+++.++. +++.++....+- ..+.+.|
T Consensus 219 ~~G~iN~Df~dv~~vl~~-~G~a~iG~G~a~---------g~~r~~~Av~~Al~s--pLL~~di~~A~~--~Lv~I~g~~ 284 (378)
T PRK13018 219 KPSLINLDFADVKSVMKG-GGVAMMGVGEAK---------GQNRAMEAVRAALAN--PLLDVDYRGAKG--ALVHITGGP 284 (378)
T ss_pred cCCceecCHHHHHHHhcc-CCEEEEEEEEec---------CCcHHHHHHHHHHhC--CCcCCChhhhce--EEEEEECCC
Confidence 999999999999887742 222222222111 011233344443332 344444433221 2234444
Q ss_pred ccChhhHHHHHHhhhc
Q 013062 322 DVVPKDVNAAVATIKT 337 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~ 337 (450)
+++..++.+....++.
T Consensus 285 ~l~l~ev~~~~~~i~~ 300 (378)
T PRK13018 285 DLTLKEANEAASRITE 300 (378)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4566777776655543
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.88 E-value=3.3e-22 Score=182.37 Aligned_cols=149 Identities=26% Similarity=0.408 Sum_probs=111.7
Q ss_pred ccccCCceeeccccc--ccCCCcccccccChhhH------HHHHH-HHHHHhhhcCCCCceeEEeecCCCccccchhHhH
Q 013062 84 RQLFHPEQLISGKED--AANNFARGHYTIGKEIV------DLCLD-RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLL 154 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g--~gnn~a~G~~~~g~~~~------~~~~d-~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~ 154 (450)
+.+|||++++..++- .+++-.+.-|..|.+.+ +++.| .||.++|+||.+||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 467888888765442 11111233344555443 45555 59999999999999999999999997 9999999
Q ss_pred HHhhhhcCCcce-eEEEEecCCCCC-----CcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchh
Q 013062 155 ERLSVDYGKKSK-LGFTVYPSPQVS-----TSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLN 228 (450)
Q Consensus 155 e~l~d~yp~~~i-~~~~v~P~~~~~-----~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N 228 (450)
|+||||||++++ +++++.+..... ....+.+|.++++.+|.+++++++|+.... +..+..|..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 555554433211 123467899999999999999999997210 234556999
Q ss_pred HHHHHHhhcccccccc
Q 013062 229 RLVSQVISSLTASLRF 244 (450)
Q Consensus 229 ~~ia~~i~~~t~~~r~ 244 (450)
+++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999984
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.84 E-value=5.1e-21 Score=192.66 Aligned_cols=207 Identities=16% Similarity=0.292 Sum_probs=163.6
Q ss_pred eEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccccc
Q 013062 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
Q Consensus 3 Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~~~ 82 (450)
.|..|.+|+||+.+-.++++. ++ .+ ...+.++++...+..+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~---------------------------~~---v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI---------------------------QG---VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998765 10 00 2558899988766554332
Q ss_pred cccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcC
Q 013062 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp 162 (450)
.+.++.++ .+...|+|++|. .|++..++..+.||+.+|.||.+ +|++++|||||||.++. +..+..+|+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC
Confidence 12222222 122348888876 46789999999999999999987 99999999999999995 555555665
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccccc
Q 013062 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
+++++|.|.+...|..+++||+.++|++|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555554444468889999999999999999999999999999999977676655 89999999999999999999
Q ss_pred ccCCCCccchhhhhccCC
Q 013062 243 RFDGALNVDVTEFQTNLV 260 (450)
Q Consensus 243 r~~~~~~~~l~~l~~~L~ 260 (450)
++||.+|.|+.++.+-|-
T Consensus 204 ~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 204 TKPGLINLDFADVKTVMS 221 (384)
T ss_pred hcCCcccCCHHHHHHHHh
Confidence 999999999999887774
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.51 E-value=1.1e-14 Score=123.36 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=56.1
Q ss_pred EeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCC----CCccccceeeeCCCCceeec
Q 013062 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDE 77 (450)
Q Consensus 2 ~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pRallvD~e~~~i~~ 77 (450)
|||||||+|+.+|+||+||||+ ||..+.++..... ...+++|+|+++. ..+|+||+|++|++.+....
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL 72 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSL 72 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCcCcc
Confidence 7999999999999999999999 9998876543221 2457899999973 45999999999999996443
Q ss_pred c
Q 013062 78 V 78 (450)
Q Consensus 78 ~ 78 (450)
-
T Consensus 73 ~ 73 (115)
T PF10644_consen 73 R 73 (115)
T ss_pred c
Confidence 3
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.37 E-value=3.8e-12 Score=126.06 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=129.6
Q ss_pred cccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCC
Q 013062 98 DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177 (450)
Q Consensus 98 g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~ 177 (450)
|+|.| +..|++..++..+.|+..++..| =++++.++|||||+|.++.+++.+++ .....++++++|+..
T Consensus 70 GaGa~-----P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~- 138 (338)
T COG0206 70 GAGAN-----PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF- 138 (338)
T ss_pred CCCCC-----cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh-
Confidence 55555 77788999999999999988877 45899999999999999999999999 478888999999974
Q ss_pred CCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccccccCCCCccchhhhhc
Q 013062 178 STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQT 257 (450)
Q Consensus 178 ~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~l~~ 257 (450)
|...+.-|+...+..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||.+|.|+.++.+
T Consensus 139 -EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~ 215 (338)
T COG0206 139 -EGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRT 215 (338)
T ss_pred -cCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHH
Confidence 556777899999999999999999999999988764 2221 2367888999999999999999999999999999988
Q ss_pred cCCCCC
Q 013062 258 NLVPYP 263 (450)
Q Consensus 258 ~L~p~p 263 (450)
-+-...
T Consensus 216 vm~~~G 221 (338)
T COG0206 216 VMKGGG 221 (338)
T ss_pred HHhcCC
Confidence 876644
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.35 E-value=2e-07 Score=79.11 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=86.0
Q ss_pred CccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHH--HhcCCCCCCcccCCCCCcchhhcccccCccCh
Q 013062 248 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 325 (450)
Q Consensus 248 ~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (450)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4679999999999999 899999999762 34456666666 7888887776665543 677665 6788
Q ss_pred hhHHHHHHhhhccCc-ccccccCC-CCceeEEeccCCccCCCCCcccccceeEeecC-CchhHHHHHHHH
Q 013062 326 KDVNAAVATIKTKRT-IQFVDWCP-TGFKCGINYQPPTVVPGGDLAKVQRAVCMISN-STSVAEVFSRID 392 (450)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~l~ 392 (450)
.++.+.+..++.+.. ..|+.|.| ..+++ ..+.+.++| +|+|..+|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~------------------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL------------------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC------------------CCCcEEEEEEecccCccccccC
Confidence 899998888877655 77899998 33311 134678999 999999988753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.62 E-value=0.00078 Score=68.25 Aligned_cols=103 Identities=19% Similarity=0.117 Sum_probs=62.1
Q ss_pred cccccccCCCccccccc---ChhhHHHHHHHHHHHhhh--cCCC--C--ceeEEeecCCCccccchhHhHHHhhhhc---
Q 013062 94 SGKEDAANNFARGHYTI---GKEIVDLCLDRIRKLADN--CTGL--Q--GFLVFNAVGGGTGSGLGSLLLERLSVDY--- 161 (450)
Q Consensus 94 ~~~~g~gnn~a~G~~~~---g~~~~~~~~d~ir~~~E~--cD~l--q--gf~i~~sl~GGtGSG~~s~l~e~l~d~y--- 161 (450)
....|+|..-+.|.... -+++.+.+.+.++..+++ -... + -+.|++|++||||||+---++-.||+.+
T Consensus 100 ~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 100 PLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred chhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 34568888877774332 223344444444421111 0011 1 2688999999999999888888888866
Q ss_pred --CCcceeEEEEecCCCCCC---cchhhhHHHHHHHHhhc
Q 013062 162 --GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLLE 196 (450)
Q Consensus 162 --p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e 196 (450)
....+..+.++|....+. .....-|+.=+|.+|.-
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~ 219 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDY 219 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHH
Confidence 355688899999843211 13334577666666653
No 34
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=74.70 E-value=13 Score=33.86 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCcee-EEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHH
Q 013062 114 IVDLCLDRIRKLADNCTGLQGFL-VFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 192 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~-i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 192 (450)
+...+.+.|+..+|+ |+- ++.+.+-|+- -.++.++-.|+.+||...+ .+++|+...+..-.+ ..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHH
Confidence 345555667777774 432 3444444443 3577777789999997444 678898754432222 3344566
Q ss_pred HhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhccccc
Q 013062 193 SLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 193 ~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
.|.+.||.++.+..+..... .-|..-|+.+..+=+.+.+-
T Consensus 97 ~il~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEEEE
Confidence 77788999998866532211 12445666666655555443
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=69.76 E-value=4.6 Score=34.64 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062 116 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
+...++|+..++++|. +|++++.++ |||=. -....+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~-n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAEM-NAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChHH-HHHHHHHhcCCC
Confidence 4466889999999999 999999999 77631 233345555544
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=66.87 E-value=6.9 Score=32.75 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEeecCCCcc
Q 013062 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (450)
-.+++.+++++.+++.+.-+|++++.++.|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 346677888888888888999999999999874
No 37
>PLN02847 triacylglycerol lipase
Probab=64.66 E-value=19 Score=38.95 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=63.1
Q ss_pred cccccccCCCCccccce-eeeCCCCceeecccccccc------------cccCCceeecccccccC----CCcccccccC
Q 013062 49 FNTFFSETGAGKHVPRA-VFVDLEPTVIDEVRTGTYR------------QLFHPEQLISGKEDAAN----NFARGHYTIG 111 (450)
Q Consensus 49 ~~~~f~e~~~~~~~pRa-llvD~e~~~i~~~~~~~~~------------~~~~~~~~~~~~~g~gn----n~a~G~~~~g 111 (450)
-++++.....+.|.|.- |++|-+.+.|=-.-.|... ..|++..+. ..|..+ .=..|++...
T Consensus 153 eDVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l~--~gG~~n~~~G~AH~Gml~AA 230 (633)
T PLN02847 153 EDVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLH--DGGVSNLVLGYAHCGMVAAA 230 (633)
T ss_pred HHEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCccccc--ccCcccCcCCccCccHHHHH
Confidence 35555555566666654 7888877755333222211 112221111 111111 1123333334
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhh--hcCCcceeEEE
Q 013062 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 170 (450)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d--~yp~~~i~~~~ 170 (450)
+.+.+.+...|++.++++...+=+++=||||||+. +.+.-.|++ .+++...++|+
T Consensus 231 rwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 231 RWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 46667777888888999988888888999998764 333444454 45555444444
No 38
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=59.89 E-value=13 Score=31.46 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhcCCCCceeEEeecCCCcc
Q 013062 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (450)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (450)
.+++.+++++.+++.+.-+|++++.++-|||=
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45677788888888887889999999999873
No 39
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=59.59 E-value=14 Score=31.18 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhcCCCCceeEEeecCCCcc
Q 013062 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (450)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (450)
.+++.+++++.+++.+.=+|++|+.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677888888888777789999999999984
No 40
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=58.26 E-value=9 Score=32.91 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCccccchhHhHHHhhhhcCC-cceeEEE
Q 013062 143 GGTGSGLGSLLLERLSVDYGK-KSKLGFT 170 (450)
Q Consensus 143 GGtGSG~~s~l~e~l~d~yp~-~~i~~~~ 170 (450)
+|-|.|+|..+++.||.++|+ ..+++..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 356778999999999999998 6666653
No 41
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=56.98 E-value=35 Score=34.48 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=57.0
Q ss_pred cChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013062 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (450)
...+.+.++.+.|+..+ +..+||+|+|+.+ | --.++.+++.+-...++-.+++=+-.|....+.........++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677777788887765 5688999999866 4 2457777777555555666666677888654433334444444
Q ss_pred HHHHhhccCCeeeEecchhhHh
Q 013062 190 STHSLLEHTDVAVLLDNEAIYD 211 (450)
Q Consensus 190 sl~~l~e~~d~~i~~~N~~l~~ 211 (450)
.+..-....-..++| |+.++.
T Consensus 137 ~~A~~~~~~GV~V~f-~~~i~~ 157 (335)
T PRK09461 137 YVAANYPINEVTLFF-NNKLFR 157 (335)
T ss_pred HHHcCCCCCeEEEEE-CCEeec
Confidence 443322233344445 555543
No 42
>PRK13660 hypothetical protein; Provisional
Probab=49.80 E-value=72 Score=29.26 Aligned_cols=111 Identities=11% Similarity=0.099 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHH
Q 013062 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (450)
+...+.+.|+..+|+ .+.=| +.+.+=|+- =.++.++-.||.+||...+ .+++|+...++.-.+ ..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wf--i~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e--~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWV--IISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE--ANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEE--EECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH--HHHHHHHH
Confidence 334555666666663 23322 222222221 2366777889999986544 456787654332111 22233456
Q ss_pred hhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccccc
Q 013062 194 LLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 194 l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
|.+.||.++.+....- -.+.-|..-|+.+..+=+.+..-+
T Consensus 98 i~~~aD~v~~vs~~~y---------~~p~q~~~rn~fmv~~sd~~i~~Y 137 (182)
T PRK13660 98 ILKQADFVKSISKRPY---------ESPAQFRQYNQFMLEHTDGALLVY 137 (182)
T ss_pred HHHhCCEEEEecCCCC---------CChHHHHHHHHHHHHccCeEEEEE
Confidence 6678999999843210 001125677887777666655543
No 43
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=49.48 E-value=24 Score=30.69 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=39.5
Q ss_pred cccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEec
Q 013062 106 GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 (450)
Q Consensus 106 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P 173 (450)
|++.....+...+...+++...++..-+-+++=||+||+. +..+...++...+.+.+..++.-|
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEEEeCC
Confidence 5555556667777777777766667777778889988764 444445555543344444444433
No 44
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=45.36 E-value=21 Score=30.55 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCC-CCceeEEeecCCCccccchh-HhHHHhhh
Q 013062 116 DLCLDRIRKLADNCTG-LQGFLVFNAVGGGTGSGLGS-LLLERLSV 159 (450)
Q Consensus 116 ~~~~d~ir~~~E~cD~-lqgf~i~~sl~GGtGSG~~s-~l~e~l~d 159 (450)
+...++|++.+|+++. =+|++++.++ ||+ =+.. ..++.++.
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~ 84 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED 84 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc
Confidence 3466788888999866 8899999999 664 2222 35555543
No 45
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=45.27 E-value=77 Score=31.59 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=51.5
Q ss_pred cChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCC-CcchhhhHHH
Q 013062 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 188 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 188 (450)
...+.+.++.+.|++.+++ .+||+|+|+.. |= -.++.++..+-+..++-.+++=+..|....+ |.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3566777778888887744 89999999765 31 3456666666555556666777788876533 4444444444
Q ss_pred HHHHHhhccCCeeeEecchhhHh
Q 013062 189 LSTHSLLEHTDVAVLLDNEAIYD 211 (450)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~~l~~ 211 (450)
....+- +..-.+++|++. ++.
T Consensus 128 ~~A~~~-~~~GV~v~f~~~-i~~ 148 (313)
T PF00710_consen 128 RVAASP-AGPGVLVVFNGR-IYA 148 (313)
T ss_dssp HHHHSG-GTSSEEEEETTE-EEE
T ss_pred HHHhcc-cCCceEEEeCCC-ccc
Confidence 443333 244455555444 543
No 46
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=43.72 E-value=76 Score=31.81 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=57.4
Q ss_pred cChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013062 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (450)
...+.+..+.+.|++.+++ .+||+|+|+.. | --.++..+..+-+. ++-.+++=+-.|....+....+....++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3566777777888777663 78999999765 3 23566666655554 6666667677887654444444444444
Q ss_pred HHHHhhc--cCCeeeEecchhhHh
Q 013062 190 STHSLLE--HTDVAVLLDNEAIYD 211 (450)
Q Consensus 190 sl~~l~e--~~d~~i~~~N~~l~~ 211 (450)
......+ ..-..|+|+++ ++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~-i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDR-IFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEECCE-Eec
Confidence 4443322 34556667544 443
No 47
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=42.77 E-value=22 Score=33.31 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=41.7
Q ss_pred CcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEE
Q 013062 103 FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT 170 (450)
Q Consensus 103 ~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~ 170 (450)
...|++..-..+.+.+...++...+++...+=++.=|||||+. ++.+.-.|+..++...+.++.
T Consensus 99 vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGai----A~l~a~~l~~~~~~~~i~~~t 162 (229)
T cd00519 99 VHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGAL----ASLLALDLRLRGPGSDVTVYT 162 (229)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHH----HHHHHHHHHhhCCCCceEEEE
Confidence 3456655556677777888888888877777788889998764 455555556554433343333
No 48
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=37.98 E-value=95 Score=32.23 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=56.3
Q ss_pred cChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCC-CcchhhhHHH
Q 013062 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 188 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 188 (450)
...+.+..+.+.|++.++ |..+||+|+|+.. | =-.++..+..+-+..|+-.+++=+-.|....+ +.....++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 355677777888888765 4468999999766 4 24566666665444455556666677876533 4444444444
Q ss_pred HHHHHhhccCCeeeEecch
Q 013062 189 LSTHSLLEHTDVAVLLDNE 207 (450)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~ 207 (450)
..-.. ..+-..++|+++
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 43222 445566777665
No 49
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=35.28 E-value=99 Score=31.19 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=57.5
Q ss_pred cChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013062 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (450)
...+.+..+.+.|+...++ .+||+|+|+.+ | =-.++..+..+-+. +|-.+++=+-.|....+.........++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3567777788888877663 78999999866 4 24567777765444 5666666677887654433344444444
Q ss_pred HHHHhhcc-----CCeeeEecchhhHhh
Q 013062 190 STHSLLEH-----TDVAVLLDNEAIYDI 212 (450)
Q Consensus 190 sl~~l~e~-----~d~~i~~~N~~l~~~ 212 (450)
......+. -..|+++=|+.++..
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~a 159 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHRG 159 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEeec
Confidence 44433231 224555556666543
No 50
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=32.78 E-value=1.3e+02 Score=31.34 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=56.5
Q ss_pred cChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCC-CcchhhhHHH
Q 013062 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 188 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 188 (450)
...+.+..+.+.|++.++. ..+||+|+|+.. |= -.++..+..+- ..|+-.+++=+-.|....+ +.....++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4567778888888888764 589999999866 42 45666666544 4455556666677875533 4444444444
Q ss_pred HHHHHhhccCCeeeEecch
Q 013062 189 LSTHSLLEHTDVAVLLDNE 207 (450)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~ 207 (450)
.. .. ...+-..++|+.+
T Consensus 207 ~~-A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LA-AT-SDIAEVVVVMHGT 223 (419)
T ss_pred HH-Hh-CCCCcEEEEECCc
Confidence 33 33 3445567777654
No 51
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=31.59 E-value=1.4e+02 Score=29.79 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHH
Q 013062 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 190 (450)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 190 (450)
..+.+..+.+.|+..+.. +..+||+|+|+.. | --.++.++..+-+..+|-.+++=+-.|....+.........++.
T Consensus 58 t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 455666666666664432 5789999999766 3 24566666665555556566666778876544333333333333
Q ss_pred HHHhhc--cCCeeeEecchhhHh
Q 013062 191 THSLLE--HTDVAVLLDNEAIYD 211 (450)
Q Consensus 191 l~~l~e--~~d~~i~~~N~~l~~ 211 (450)
...-.+ ..-..++| |+.++.
T Consensus 134 ~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 134 VAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred HHcCcccCCCEEEEEE-CCEeee
Confidence 332222 23344555 555554
No 52
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=31.53 E-value=16 Score=30.99 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=37.6
Q ss_pred ccccccCh-hhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCC--cceeEEEE
Q 013062 105 RGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK--KSKLGFTV 171 (450)
Q Consensus 105 ~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~--~~i~~~~v 171 (450)
.|++..-. ...+.+.+.|+..+++.....=++.=||+||+ ++..+.-.+....+. ..+.+++.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~~~~~~~~~~f 101 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPSSSSNVKCYTF 101 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTTSTTTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccccccceeeeec
Confidence 34443333 56677888888888776655455667788765 555555566655543 33444443
No 53
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.42 E-value=1.6e+02 Score=22.69 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhc--CCCCceeEEeecC----CCccccchhHhHHHhhhhcCCcceeEEEEe
Q 013062 116 DLCLDRIRKLADNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172 (450)
Q Consensus 116 ~~~~d~ir~~~E~c--D~lqgf~i~~sl~----GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~ 172 (450)
++..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~ 68 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeec
Confidence 34555666666665 3557888999988 554 777788888776666666555443
No 54
>PF03283 PAE: Pectinacetylesterase
Probab=31.23 E-value=1.2e+02 Score=31.00 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.1
Q ss_pred ccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCC
Q 013062 107 HYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 107 ~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~ 163 (450)
.|..|....+.+++.|... .-+..+-+++..+.+||.|+- .-.+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~--gl~~a~~vlltG~SAGG~g~~---~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSN--GLPNAKQVLLTGCSAGGLGAI---LHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHh--cCcccceEEEeccChHHHHHH---HHHHHHHHHhcc
Confidence 4566888888877777665 233344568877877776532 227889999995
No 55
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=30.59 E-value=30 Score=28.10 Aligned_cols=54 Identities=28% Similarity=0.452 Sum_probs=39.4
Q ss_pred eecCCchhHHHHHHH-------HHHHHHhhccccceeccccCCCCc--chHHHHHHHHHHHHHHHHHh
Q 013062 377 MISNSTSVAEVFSRI-------DHKFDLMYAKRAFVHWYVGEGMEE--GEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 377 ~l~Nst~i~~~l~~l-------~~~~~~m~~rkAflH~Y~~~Gmee--~eF~Ea~~~l~~l~~~Y~~~ 435 (450)
.++|.++|..+|..| ++.-.++--+|+|. ||+.. ....||+..|+.|-.+++.=
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888765 45556666677655 67743 68999999999999999753
No 56
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=29.68 E-value=24 Score=16.94 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=6.0
Q ss_pred ccCCCCCc
Q 013062 257 TNLVPYPR 264 (450)
Q Consensus 257 ~~L~p~p~ 264 (450)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 57
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=28.77 E-value=68 Score=32.19 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhcCCCCceeEEeecCCCcc
Q 013062 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (450)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtG 146 (450)
.+++.++++..+++.+.-+|++|+.++-|||=
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677788888888877789999999999984
No 58
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=28.23 E-value=58 Score=30.79 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=21.7
Q ss_pred EEeecCCCccccchhHhHHHhhhhcCCc
Q 013062 137 VFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (450)
Q Consensus 137 i~~sl~GGtGSG~~s~l~e~l~d~yp~~ 164 (450)
++-+++||.|||= +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5678999999998 44778888888744
No 59
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=25.93 E-value=1.3e+02 Score=31.15 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=43.1
Q ss_pred ccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCC
Q 013062 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (450)
Q Consensus 109 ~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~ 175 (450)
..-++-.+.+.+.|++.+++|| +++.| ||++.|-.-.+-+.|+++.+...+.-+.+-|-.
T Consensus 223 giv~Dd~~~l~~~i~~a~~~~D-----viIts--GG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGk 282 (404)
T COG0303 223 GIVPDDPEALREAIEKALSEAD-----VIITS--GGVSVGDADYVKAALERELGEVLFHGVAMKPGK 282 (404)
T ss_pred cccCCCHHHHHHHHHHhhhcCC-----EEEEe--CCccCcchHhHHHHHHhcCCcEEEEeeeecCCC
Confidence 3445667888999999999999 33433 667667777777777765666777777777764
No 60
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=25.80 E-value=80 Score=20.00 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.1
Q ss_pred ceeEEeecCCCccccchhHhHHHhhhhc
Q 013062 134 GFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 134 gf~i~~sl~GGtGSG~~s~l~e~l~d~y 161 (450)
..||..| || |.++.++..||++.
T Consensus 4 ~LqI~IS----Tn-G~sP~la~~iR~~i 26 (30)
T PF14824_consen 4 PLQIAIS----TN-GKSPRLARLIRKEI 26 (30)
T ss_dssp TEEEEEE----ES-SS-HHHHHHHHHHH
T ss_pred CeEEEEE----CC-CCChHHHHHHHHHH
Confidence 3577777 43 67899999998864
No 61
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=25.04 E-value=1.1e+02 Score=27.95 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCCCceeecccccc-c--ccccCCceeecc------cccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEe
Q 013062 69 DLEPTVIDEVRTGT-Y--RQLFHPEQLISG------KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN 139 (450)
Q Consensus 69 D~e~~~i~~~~~~~-~--~~~~~~~~~~~~------~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~ 139 (450)
|-+.+++-+-.-|+ + ...||++--..+ ..+.|.||+-+. +++.+.+...+.. +.+-+-...-.+..
T Consensus 46 ~~dg~vvGS~LIGQ~Ft~~~yFhgRPsa~~~~~yn~~aSggSNl~psN----p~L~~rv~~~~~~-lr~~~~~~~~~vP~ 120 (190)
T COG2156 46 DGDGKVVGSALIGQNFTSPGYFHGRPSATDGEPYNAVASGGSNLGPSN----PELLERVKARVAA-LRAENPVNDSEVPV 120 (190)
T ss_pred cCCCcEeehhhhccccCCCccccCCCcccCCCCCCccccCCcCCCCCC----HHHHHHHHHHHHH-HHhcCCCCCCCCCH
Confidence 67777665543333 1 134555432221 234566777764 4566666655333 23334556678888
Q ss_pred ecCCCccccchhHh
Q 013062 140 AVGGGTGSGLGSLL 153 (450)
Q Consensus 140 sl~GGtGSG~~s~l 153 (450)
++.-..|||+=+-|
T Consensus 121 dlvt~SgSGLDP~I 134 (190)
T COG2156 121 DLVTASGSGLDPHI 134 (190)
T ss_pred HHHhccccCCCCCC
Confidence 88888899976544
No 62
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=23.86 E-value=1.5e+02 Score=30.16 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHH
Q 013062 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 191 (450)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl 191 (450)
+++.+++...++.+.|.-..--|..+..-.++|.+.|+|.-|+-.+.-++ .| -.+..-.++-|
T Consensus 216 ~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l----------~~-------Gi~iV~~~~~l 278 (378)
T COG1929 216 PEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL----------KS-------GIEIVLEATNL 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc----------cc-------cHHHHHHHhCH
Confidence 47788888899999988777777778888888888899999987776443 11 13445566778
Q ss_pred HHhhccCCeeeE----ecchhhH
Q 013062 192 HSLLEHTDVAVL----LDNEAIY 210 (450)
Q Consensus 192 ~~l~e~~d~~i~----~~N~~l~ 210 (450)
....+-+|+||. +|++.++
T Consensus 279 e~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 279 EDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred HHhhccCCEEEeCCCcccccccC
Confidence 888899999997 7777765
No 63
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=22.87 E-value=1.2e+02 Score=29.69 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=31.3
Q ss_pred cCCCcccccccChhhHHHHH-HHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEE
Q 013062 100 ANNFARGHYTIGKEIVDLCL-DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (450)
Q Consensus 100 gnn~a~G~~~~g~~~~~~~~-d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v 171 (450)
.-.++-|||..+.+-.++.. .++...+|+++-=.| .=+-++|.||| |+ +..+...| +..+.++.+
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~----~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GL----AIYAAERY-GCHVTGITL 93 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HH----HHHHHHHH---EEEEEES
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HH----HHHHHHHc-CcEEEEEEC
Confidence 34567788877776565555 467888888864444 55678888887 43 34455556 444444433
No 64
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.53 E-value=3.2e+02 Score=26.56 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=28.3
Q ss_pred hhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecch
Q 013062 157 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE 207 (450)
Q Consensus 157 l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~ 207 (450)
..+.+.+..+.+.-+++....-....+..|+.-++..|.+. .+||+=|.
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 34444444555555665543223444555888888888876 45565443
No 65
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=22.51 E-value=1.6e+02 Score=31.46 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=24.8
Q ss_pred CceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCC
Q 013062 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (450)
Q Consensus 133 qgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~ 175 (450)
.++-+.-++|+|+|| ||++|++ +-+.++++.|..
T Consensus 116 g~iR~~LDvGcG~aS-F~a~l~~--------r~V~t~s~a~~d 149 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS-FGAYLLE--------RNVTTMSFAPND 149 (506)
T ss_pred CceEEEEeccceeeh-hHHHHhh--------CCceEEEccccc
Confidence 467889999999985 8888863 355666666653
No 66
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=22.02 E-value=1.8e+02 Score=21.46 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=23.0
Q ss_pred eeEEeecCCCccccchhH--hHHHhhhhcCCcceeEE
Q 013062 135 FLVFNAVGGGTGSGLGSL--LLERLSVDYGKKSKLGF 169 (450)
Q Consensus 135 f~i~~sl~GGtGSG~~s~--l~e~l~d~yp~~~i~~~ 169 (450)
++++.++.|..|=.+... |.+.||..|++++++.+
T Consensus 17 ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 17 ILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp EEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 567889998776555443 57889999999887655
No 67
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=21.18 E-value=97 Score=32.61 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=43.2
Q ss_pred cccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCc----eeEEeecCCCccccchhHhHHHhhhh
Q 013062 98 DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQG----FLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 98 g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqg----f~i~~sl~GGtGSG~~s~l~e~l~d~ 160 (450)
|++-.|-.+| ...+..|+...++++.+|..-.+.| ++|-||+|| =+.-..+....++
T Consensus 146 ga~YDwRls~--~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~----l~~lyFl~w~~~~ 206 (473)
T KOG2369|consen 146 GAPYDWRLSY--HNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGG----LYVLYFLKWVEAE 206 (473)
T ss_pred ccccchhhcc--CChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCcc----HHHHHHHhccccc
Confidence 6777888876 3467889999999999999999988 688899874 2455555555553
No 68
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=20.58 E-value=75 Score=25.66 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=21.9
Q ss_pred CceeEEeecCCCccccchhHhHHHhhh
Q 013062 133 QGFLVFNAVGGGTGSGLGSLLLERLSV 159 (450)
Q Consensus 133 qgf~i~~sl~GGtGSG~~s~l~e~l~d 159 (450)
.+|-|+.+...|+|+.+.+.|++.+.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477999999999998888888888765
No 69
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.43 E-value=2.7e+02 Score=27.17 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=46.6
Q ss_pred HHHHHHhhhcCCCCceeEEeecCCCccccch-----hHhHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHh
Q 013062 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLG-----SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194 (450)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~-----s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 194 (450)
+++++.++. -+||....|..|-||.=.. ..+++.+|..-..-....|+|-- .-...++
T Consensus 161 ~rl~~i~~~---a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~--------------~e~~~~v 223 (265)
T COG0159 161 ERLKKIAEA---ASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISS--------------PEQAAQV 223 (265)
T ss_pred HHHHHHHHh---CCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCC--------------HHHHHHH
Confidence 556666665 4599999999999997544 44566666654222334444421 1234566
Q ss_pred hccCCeeeEecchhhHhhhh
Q 013062 195 LEHTDVAVLLDNEAIYDICR 214 (450)
Q Consensus 195 ~e~~d~~i~~~N~~l~~~~~ 214 (450)
.+.+|++|+= .++.+++.
T Consensus 224 ~~~ADGVIVG--SAiV~~i~ 241 (265)
T COG0159 224 AEAADGVIVG--SAIVKIIE 241 (265)
T ss_pred HHhCCeEEEc--HHHHHHHH
Confidence 7779999883 44545443
No 70
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=2.8e+02 Score=25.14 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred CcccccccChhhHHHHHHHHHHHhhhc--CCCCceeEEeecCCCccccchhHhHHHhhhhcCCcceeEEEEecCCCCCCc
Q 013062 103 FARGHYTIGKEIVDLCLDRIRKLADNC--TGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180 (450)
Q Consensus 103 ~a~G~~~~g~~~~~~~~d~ir~~~E~c--D~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~yp~~~i~~~~v~P~~~~~~~ 180 (450)
|..|-+.......-.+.+.||+.+|.- +.+.=++|++.+| +- =.++-++..|+++||+..+. .+.|+...+++
T Consensus 12 felgiF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqLG--~E-~WA~Evv~eLk~eyp~ik~a--vitpFe~q~~~ 86 (180)
T COG4474 12 FELGIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQLG--FE-LWAAEVVIELKEEYPHIKLA--VITPFEEQGKN 86 (180)
T ss_pred eeeccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEecccc--HH-HHHHHHHHHHHhhCCCeeEE--EEechhhhccc
Confidence 445555554444555667777766642 4566566654332 21 23667788899999865543 45676543332
Q ss_pred chhhhHHHHHHHHhhccCCeeeE
Q 013062 181 VVEPYNSVLSTHSLLEHTDVAVL 203 (450)
Q Consensus 181 ~~~~yN~~lsl~~l~e~~d~~i~ 203 (450)
-.+ +.-.-++++.+.+|.|.-
T Consensus 87 WnE--~nq~ky~~~l~~aD~v~~ 107 (180)
T COG4474 87 WNE--DNQMKYARILKAADFVKS 107 (180)
T ss_pred cCc--hhHHHHHHHHhhhhhhhh
Confidence 222 222334445555655443
Done!