BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013065
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana
GN=At5g63520 PE=2 SV=1
Length = 529
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 188/455 (41%), Positives = 260/455 (57%), Gaps = 50/455 (10%)
Query: 1 MCEKMQLV-KHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ---DHEDIGVNRGICTCG 56
M E + L+ + +G R PII+SVV G++G++A D+ EV+ D E V
Sbjct: 116 MEETLTLITERVGSRVPIIVSVVTGILGKEACNDKAGEVRLHSTSDDELFDV-------- 167
Query: 57 QQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYT 116
I+LT+GYLPG+KVD IP+++ K M D+FVMDI+NY
Sbjct: 168 ANFAILLTIGYLPGMKVDIIPVIQAKG---------------ESGAEMEDKFVMDIRNYM 212
Query: 117 TSVSG-CASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVC 175
+ VSG A+P +I+F ++ +P++ KLDYAM TV VG + F ++ G++ RNV
Sbjct: 213 SMVSGHAAAPACLILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNVQ 272
Query: 176 GNPAFISDAVALVFASDKDKPHAGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--S 233
I L+FA D+ +P A IQF A+S G+S++ R+KA +V + S
Sbjct: 273 LQKDDIRVLAGLIFARDRHRP-AQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPS 331
Query: 234 TWLTAKREGHHVILDGEQILRHIDQ-LENRFPQVELYVGVTKRRKCSIG-SEKSRLITTL 291
T LTAKR G +LDG+QIL ID LEN + + Y+GV KRRK SIG EK +++++L
Sbjct: 332 TLLTAKRRGEAEVLDGDQILDDIDNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSSL 391
Query: 292 AFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFL 351
FH + G D + L VDG GIKTGD FQ Y PD A AA + S +RNLK
Sbjct: 392 VFHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK--------- 442
Query: 352 GRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 411
+ ++ EV+GGF F RG+SFFG N DS PF ENFP P GIFC GEIGR
Sbjct: 443 ------SKPNKPEVVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGR 496
Query: 412 GKLSMTGQESQEESPAERRYLHVYSTAYLVISYSA 446
+ G+E +E S +R+LHVYS+ YL++SY++
Sbjct: 497 SLILEEGEEKKEVSI--QRFLHVYSSVYLIVSYTS 529
>sp|Q78JE5|FBX22_MOUSE F-box only protein 22 OS=Mus musculus GN=Fbxo22 PE=2 SV=2
Length = 402
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 368 GFIFSCCGRGNSFF---GGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
GF+F+C GRG ++ G + D+F F FPS PL G F GEIG
Sbjct: 320 GFMFACVGRGFQYYRAKGNVEADAFRKF--FPSVPLFGFFGNGEIG 363
>sp|Q5RE08|FBX22_PONAB F-box only protein 22 OS=Pongo abelii GN=FBXO22 PE=2 SV=1
Length = 403
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 368 GFIFSCCGRGNSFF---GGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
GF+F+C GRG ++ G + D+F F FPS PL G F GEIG
Sbjct: 321 GFMFACVGRGFQYYRAKGNVEADAFRKF--FPSVPLFGFFGNGEIG 364
>sp|Q8NEZ5|FBX22_HUMAN F-box only protein 22 OS=Homo sapiens GN=FBXO22 PE=1 SV=1
Length = 403
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 368 GFIFSCCGRGNSFF---GGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
GF+F+C GRG ++ G + D+F F FPS PL G F GEIG
Sbjct: 321 GFMFACVGRGFQYYRAKGNVEADAFRKF--FPSVPLFGFFGNGEIG 364
>sp|P64730|Y644_MYCBO Uncharacterized protein Mb0644c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0644c PE=4 SV=1
Length = 383
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 366 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
+GG +F+C GRG FG + D+ + PLAG F GEIG
Sbjct: 319 VGGLLFTCNGRGRRMFGVTDHDASTIEDLLGGIPLAGFFAAGEIG 363
>sp|P64729|Y628_MYCTU Uncharacterized protein Rv0628c/MT0656 OS=Mycobacterium
tuberculosis GN=Rv0628c PE=4 SV=1
Length = 383
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 366 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
+GG +F+C GRG FG + D+ + PLAG F GEIG
Sbjct: 319 VGGLLFTCNGRGRRMFGVTDHDASTIEDLLGGIPLAGFFAAGEIG 363
>sp|P0A5D4|Y898_MYCBO Uncharacterized protein Mb0898c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb0898c PE=4 SV=1
Length = 386
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 367 GGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
G +F+C GRG FG + D+ E PLAG F GEIG
Sbjct: 320 GALLFTCNGRGRRMFGVADHDASTIEELLGGIPLAGFFAAGEIG 363
>sp|P0A5D3|Y874_MYCTU Uncharacterized protein Rv0874c/MT0897 OS=Mycobacterium
tuberculosis GN=Rv0874c PE=4 SV=1
Length = 386
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 367 GGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
G +F+C GRG FG + D+ E PLAG F GEIG
Sbjct: 320 GALLFTCNGRGRRMFGVADHDASTIEELLGGIPLAGFFAAGEIG 363
>sp|B6YXX2|GLMM_THEON Probable phosphoglucosamine mutase OS=Thermococcus onnurineus
(strain NA1) GN=glmM PE=3 SV=1
Length = 449
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 246 ILDGEQILRHIDQL---ENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQE 302
I G +L ID+L +V YV + + C G +K+R + +A ++ D E
Sbjct: 333 IFAGALVLEMIDRLGPISELAKEVPRYVTLRAKIPCPNG-KKARAMEIIAHEALKSFDYE 391
Query: 303 YLY-VDGVGIKTGDYFQFYQP 322
L +DGV I+ GD++ ++P
Sbjct: 392 RLIDIDGVRIENGDWWILFRP 412
>sp|Q58D55|BGAL_BOVIN Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1
Length = 653
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 35 FREVKFQDH--EDI------GVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRK 82
F + +F DH ED+ GVN + CG G+ TV + PG + A +L+RK
Sbjct: 201 FLQKRFHDHLGEDVLLFTTDGVNERLLQCGALQGLYATVDFSPGTNLTAAFMLQRK 256
>sp|Q48IB1|DNAE2_PSE14 Error-prone DNA polymerase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 160 RSRFAYRS--GDDLRNVCGNPAFISDAVALVFASDKDKPHAGTGEIQFHLAMSEGVSAIG 217
R RFA R G +L + ++D +AL A P +G++ H + G A+
Sbjct: 143 RERFAERLWLGVELHRGADDEQRLADLLAL--AQSLGIPAVASGDVHMH---ARGRRALQ 197
Query: 218 PRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRK 277
A+ AE GH + +GE+ LR +D L +P L V R+
Sbjct: 198 DTMTAIRHHTTVAEA---------GHLLFANGERHLRPLDALAEHYPDWLLAESVRIARR 248
Query: 278 CS 279
C+
Sbjct: 249 CT 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,240,175
Number of Sequences: 539616
Number of extensions: 7791340
Number of successful extensions: 14570
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14553
Number of HSP's gapped (non-prelim): 22
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)