Query 013065
Match_columns 450
No_of_seqs 153 out of 291
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 00:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4398 Uncharacterized protei 100.0 8.8E-50 1.9E-54 389.8 20.0 254 126-445 126-388 (389)
2 COG3287 Uncharacterized conser 99.9 5.8E-23 1.3E-27 210.2 17.0 246 124-442 128-379 (379)
3 PF10442 FIST_C: FIST C domain 99.8 2.1E-18 4.5E-23 152.5 10.6 98 288-411 37-135 (136)
4 PF08495 FIST: FIST N domain; 99.5 1.1E-13 2.3E-18 128.3 12.7 99 125-251 97-198 (198)
5 PF08495 FIST: FIST N domain; 65.0 12 0.00026 34.3 5.1 43 364-411 1-43 (198)
6 COG3287 Uncharacterized conser 42.2 48 0.001 35.3 5.6 44 363-411 29-72 (379)
7 PF12000 Glyco_trans_4_3: Gkyc 35.8 1.4E+02 0.0029 28.3 7.0 66 313-406 32-97 (171)
8 COG1348 NifH Nitrogenase subun 24.9 4.5E+02 0.0098 26.8 8.8 93 291-411 120-217 (278)
9 COG1984 DUR1 Allophanate hydro 23.9 4.5E+02 0.0099 27.5 8.9 22 308-329 273-294 (314)
10 PF05662 YadA_stalk: Coiled st 23.8 40 0.00087 21.5 0.8 15 18-32 3-17 (21)
No 1
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8.8e-50 Score=389.80 Aligned_cols=254 Identities=23% Similarity=0.307 Sum_probs=218.1
Q ss_pred cEEEEecCC-CCChHHHHHHhhhhcCCCceeeccc-ccccccccCCCccceeCCCceecCeEEEEEecCCCCCCCCCCce
Q 013065 126 VGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDE-RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHAGTGEI 203 (450)
Q Consensus 126 ~gi~~f~d~-~~~~~~ll~gL~~al~~~~vI~Gg~-agd~~f~~g~~~r~~~~~~~~~~~aVaL~f~gd~~~p~a~~G~i 203 (450)
...|++.|+ ++....++++|+.++|.. .++||. +|. +.+.+.|.++..+.+.++.|++.+.| +
T Consensus 126 ~~~ilL~dp~t~~~n~li~~l~~~~Pgt-tvvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~L~G-----------i 190 (389)
T COG4398 126 DLHLLLPDPYTFPSNLLIEHLNTDLPGT-TVVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVRLPG-----------I 190 (389)
T ss_pred CceEEccCCcccchHHHhhccCcCCCCc-eEEccEeecC---ccCCceEEeecCCcccCceeEEeecc-----------c
Confidence 456788998 999999999999999975 566664 444 33334445555557777899998754 4
Q ss_pred EEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccChhhhhhhh-------HhhccCCCcceeEEEEecc
Q 013065 204 QFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHID-------QLENRFPQVELYVGVTKRR 276 (450)
Q Consensus 204 ~~~~~vsqGcrPiGp~~~Vt~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~-------e~~~~l~~~~L~iGva~~~ 276 (450)
+....|+|||||||.+|.|| ++++|+| .||+|+|-|..|. +.+++|.+++|++|++++|
T Consensus 191 ~l~~vVsQGCRPIGeP~iVt-----~a~~niI---------tEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE 256 (389)
T COG4398 191 RLVPVVSQGCRPIGEPYIVT-----GADGNII---------TELGGRPPLQRLREIVEGLSPDERALVSHGLQIGIVVDE 256 (389)
T ss_pred eecchhccCcccCCCceEee-----ccCceeE---------eecCCCChHHHHHHHhhccChhhHHHHhcCceEEEEehh
Confidence 46689999999999999995 9999999 8889998887555 4488999999999999999
Q ss_pred cccCCCCCceeEEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccc
Q 013065 277 KCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDV 356 (450)
Q Consensus 277 ~~~~~~~~~~~vR~ll~~d~~~gs~e~~i~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~l~~~~~ 356 (450)
.+.....++|++|.+++.|+.+|+ |.+++-|++|+++||++||++++..|++-..+.. .+++
T Consensus 257 ~~~~~~qGDFlIR~lLG~DPs~Ga----IaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~----------- 318 (389)
T COG4398 257 HLAAPGQGDFLIRGLLGADPSTGA----IAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL----------- 318 (389)
T ss_pred hhcCCCCCceEeeeccccCCCCCc----eeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC-----------
Confidence 887777899999999999999999 9999999999999999999999998777655444 2232
Q ss_pred cCccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccc
Q 013065 357 ANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYS 436 (450)
Q Consensus 357 ~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT 436 (450)
...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+||||| +++ +|+||+||
T Consensus 319 -----~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g---------r~~LHG~T 379 (389)
T COG4398 319 -----PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG---------RNALHGFT 379 (389)
T ss_pred -----CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------hhhhhccc
Confidence 35789999999999999999999999999999999999999999999999 999 99999999
Q ss_pred eeEeeeecC
Q 013065 437 TAYLVISYS 445 (450)
Q Consensus 437 ~v~~l~se~ 445 (450)
+++++|.++
T Consensus 380 s~~ai~~~~ 388 (389)
T COG4398 380 ASMALFVDD 388 (389)
T ss_pred eeeEEEeec
Confidence 999999875
No 2
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=5.8e-23 Score=210.23 Aligned_cols=246 Identities=15% Similarity=0.171 Sum_probs=186.7
Q ss_pred CCcEEEEecCC-CCChHHHHHHhhhhcCCCceeecccccc-cccccCCCccceeCCCceecCeEEEEEecCCCCCCCCCC
Q 013065 124 SPVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHAGTG 201 (450)
Q Consensus 124 ~p~gi~~f~d~-~~~~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~~r~~~~~~~~~~~aVaL~f~gd~~~p~a~~G 201 (450)
.+.-.+.|-|+ ..-.+.+++++..+....+||.||.||| +.|.++ .++.++.+.++++++++ +.+
T Consensus 128 r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t----~v~~~g~v~~~aavi~l---------~~t 194 (379)
T COG3287 128 RPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT----YVFDEGEVHEDAAVILL---------FGT 194 (379)
T ss_pred CceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE----EEEEccccccCceEEEE---------ecc
Confidence 35677889998 5446777776777777889999999999 799887 77778888889655555 356
Q ss_pred ceEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccChhhhhhhhHhh---ccCCC-cceeEEEEeccc
Q 013065 202 EIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQ-VELYVGVTKRRK 277 (450)
Q Consensus 202 ~i~~~~~vsqGcrPiGp~~~Vt~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~e~~---~~l~~-~~L~iGva~~~~ 277 (450)
.+.|+++.++||.|.+.+++|| |+++|+| +||||+||.+.+.+.- ++++. .-.-.++...+.
T Consensus 195 ~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~vV---------~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~ 260 (379)
T COG3287 195 QLKFGHGFAHGFVPTDKTGVVT-----KADGDVV---------YEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL 260 (379)
T ss_pred eEEeecccccceEEccceEEEE-----eecCcEE---------EEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC
Confidence 7779999999999999999996 8899999 9999999999666442 34432 222234433331
Q ss_pred ccCCCCCceeEEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013065 278 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA 357 (450)
Q Consensus 278 ~~~~~~~~~~vR~ll~~d~~~gs~e~~i~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~l~~~~~~ 357 (450)
...+++|.+.++|++++. +.+-..|+.|..++++.... ...++++ .++....++
T Consensus 261 -----~~~y~vr~p~~~~e~~~~----~f~~~~i~~~v~lr~~~~~~--~~~~~e~---~~~~a~~~~------------ 314 (379)
T COG3287 261 -----GPLYYVRAPQFVDEEGGL----IFLSAAIPLGVVLRLGETGG--IERVTER---ALRRAFEDL------------ 314 (379)
T ss_pred -----CCcEEEeCcceeccccce----EEeeccCCCccEEEeecCCc--ccHHHHH---HHHHHHhhc------------
Confidence 567999999999988554 55566999999999998555 3322222 222223222
Q ss_pred CccCCCceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013065 358 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST 437 (450)
Q Consensus 358 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~ 437 (450)
++++.+-|.|+|++| .++-+.+.+.+.+++.+|.=|++|||||||++|. .+ -+..||+|.
T Consensus 315 ----~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~~-----~g---------~~~h~Nqtf 374 (379)
T COG3287 315 ----PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGPI-----TG---------ENVHHNQTF 374 (379)
T ss_pred ----cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceeccccccccccc-----cc---------cceeeeeEE
Confidence 344899999999999 6777999999999999996699999999999993 35 589999998
Q ss_pred eEeee
Q 013065 438 AYLVI 442 (450)
Q Consensus 438 v~~l~ 442 (450)
+-..|
T Consensus 375 ~~v~f 379 (379)
T COG3287 375 VGVAF 379 (379)
T ss_pred EEEeC
Confidence 76553
No 3
>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes. The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.77 E-value=2.1e-18 Score=152.53 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=85.6
Q ss_pred EEEEEeecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeE
Q 013065 288 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLG 367 (450)
Q Consensus 288 vR~ll~~d~~~gs~e~~i~~g~~I~~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~g 367 (450)
+|.++.+|+.+|+ |+++.+|++|+.||||.+|++...++++++++++ . ..+|.+
T Consensus 37 ir~~~~~~~~~gs----l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~~ 90 (136)
T PF10442_consen 37 IRSPLAIDPEDGS----LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPEG 90 (136)
T ss_pred EeeeeEEcCCCCE----EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCceE
Confidence 9999999998999 9999999999999999999999886555544433 1 357999
Q ss_pred EEEEEeCCCCcCCCCCCccchHhHHhhCCC-CceeeeecccccCC
Q 013065 368 GFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR 411 (450)
Q Consensus 368 aLlFSC~GRG~~lfg~~~~E~~~v~e~lp~-vPlaGFy~~GEIgP 411 (450)
+|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus 91 ~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~ 135 (136)
T PF10442_consen 91 ALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP 135 (136)
T ss_pred EEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence 999999999555555888999999999995 99999999999998
No 4
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=99.52 E-value=1.1e-13 Score=128.27 Aligned_cols=99 Identities=22% Similarity=0.360 Sum_probs=85.2
Q ss_pred CcEEEEecCC-CCChHHHHHHhhhhcCCCceeecccccc-cccccCCCccceeCCCceecC-eEEEEEecCCCCCCCCCC
Q 013065 125 PVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHAGTG 201 (450)
Q Consensus 125 p~gi~~f~d~-~~~~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~~r~~~~~~~~~~~-aVaL~f~gd~~~p~a~~G 201 (450)
...+++|.|+ +.+.++++++|.......++|+||.+|+ ..|+++ .++.++++.++ +|+++|. |
T Consensus 97 ~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~~~~~~~~----~v~~~~~~~~~g~v~~~~~----------~ 162 (198)
T PF08495_consen 97 SPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGDNLDFERT----YVFANGQVYSDGAVVVAFS----------G 162 (198)
T ss_pred CcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCCCCcCCce----EEEEeeeeccCcEEEEEEc----------C
Confidence 4678899998 8889999999988888899999999999 566665 77766667666 7888874 3
Q ss_pred ceEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccChh
Q 013065 202 EIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQ 251 (450)
Q Consensus 202 ~i~~~~~vsqGcrPiGp~~~Vt~v~~T~segNvll~l~~~g~~~eLDg~p 251 (450)
++++.+.+.|||+|+|.+++|| ++++|+| +|||+||
T Consensus 163 ~l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I---------~eld~~P 198 (198)
T PF08495_consen 163 SLKIDSFVSHGWEPIGKPMTVT-----KAEGNII---------YELDGRP 198 (198)
T ss_pred CceEEEEEecCeEeCCCCEEEE-----EecCCEE---------EEECCcC
Confidence 5679999999999999999996 8899999 9999998
No 5
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=65.00 E-value=12 Score=34.35 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=32.3
Q ss_pred ceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCC
Q 013065 364 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 411 (450)
Q Consensus 364 ~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 411 (450)
+|.++++|++..- .....=.+.+++.||+.+++|.-+.|||..
T Consensus 1 ~p~lvi~f~s~~~-----~~~~~i~~~l~~~~p~~~iiG~st~g~i~~ 43 (198)
T PF08495_consen 1 RPDLVILFCSPEY-----DEEAKILEALRERLPDAPIIGCSTAGEICG 43 (198)
T ss_pred CCEEEEEEecchh-----hhhHHHHHHHHHHCCCCcEEEEccCchhCC
Confidence 3778888887441 111113578999999999999999999987
No 6
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=42.23 E-value=48 Score=35.29 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=35.1
Q ss_pred CceeEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCC
Q 013065 363 KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 411 (450)
Q Consensus 363 ~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 411 (450)
.++-++++|+|--|=. ...=++++++.+|+++++|.=+.|||.|
T Consensus 29 ~~~~~~~ifF~~~~~~-----~~~l~~~l~~~~pg~~liGCSTaGeitp 72 (379)
T COG3287 29 DRSDFVLIFFSPERDE-----HVQLASALKQAFPGICLIGCSTAGEITP 72 (379)
T ss_pred CCCCeEEEEecccccc-----HHHHHHHHHhhCCCCeEeccccCceEcc
Confidence 4577899898865532 1134689999999999999999999997
No 7
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=35.85 E-value=1.4e+02 Score=28.35 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeEEEEEEeCCCCcCCCCCCccchHhHH
Q 013065 313 TGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFF 392 (450)
Q Consensus 313 ~G~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~ 392 (450)
+......+.++.+++..--+.+++.+++|+++ +..|- +++.=.|=|+.|| ++
T Consensus 32 ~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-----------------Gf~PD--vI~~H~GWGe~Lf---------lk 83 (171)
T PF12000_consen 32 PTPGTHPYVRDFEAAVLRGQAVARAARQLRAQ-----------------GFVPD--VIIAHPGWGETLF---------LK 83 (171)
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHc-----------------CCCCC--EEEEcCCcchhhh---------HH
Confidence 34555668888888775444555555555542 33443 5666678886665 89
Q ss_pred hhCCCCceeeeecc
Q 013065 393 ENFPSAPLAGIFCG 406 (450)
Q Consensus 393 e~lp~vPlaGFy~~ 406 (450)
+.||++|+++++=+
T Consensus 84 dv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 84 DVFPDAPLIGYFEF 97 (171)
T ss_pred HhCCCCcEEEEEEE
Confidence 99999999997643
No 8
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=24.93 E-value=4.5e+02 Score=26.83 Aligned_cols=93 Identities=24% Similarity=0.265 Sum_probs=49.9
Q ss_pred EEeecCCCCCceeeEe---eccCCCCC--CEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCce
Q 013065 291 LAFHGIRGGDQEYLYV---DGVGIKTG--DYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEV 365 (450)
Q Consensus 291 ll~~d~~~gs~e~~i~---~g~~I~~G--~~vqf~~RD~~aA~~dl~~~~~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p 365 (450)
++.+|+.+ | ++ |+.+|++| +.+-+-.+.---|.=...+++..+++.+.+ +...
T Consensus 120 vviyDVLG-D----VVCGGFAmPiReg~AdeiyIVtSge~MalYAANNI~kgi~k~a~~-----------------~~~r 177 (278)
T COG1348 120 VVIYDVLG-D----VVCGGFAMPIREGYADEIYIVTSGEMMALYAANNIAKGIRKYAKT-----------------GGVR 177 (278)
T ss_pred EEEEeccC-c----eeecceeeehhcccCcEEEEEecCchHHHHHHHHHHHHHHHHhhc-----------------CCcc
Confidence 34577654 4 44 56688877 444443333223332233444444333321 2234
Q ss_pred eEEEEEEeCCCCcCCCCCCccchHhHHhhCCCCceeeeecccccCC
Q 013065 366 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR 411 (450)
Q Consensus 366 ~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP 411 (450)
.+|++ |+.|+.. ...+=++.|.+.+ +.|+++|-=.-+|-.
T Consensus 178 LgGiI--cNsr~~~---~e~e~v~~fa~~i-gt~li~~vPr~~ivq 217 (278)
T COG1348 178 LGGII--CNSRSVD---RERELVEAFAERL-GTQLIHFVPRDNIVQ 217 (278)
T ss_pred eeeEE--ecCCCcc---cHHHHHHHHHHHh-CCceEeeccchHHHH
Confidence 77876 6677722 3344456677777 688888876655543
No 9
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=23.94 E-value=4.5e+02 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.1
Q ss_pred ccCCCCCCEEEEEcCCHHHHHH
Q 013065 308 GVGIKTGDYFQFYQPDHNAALA 329 (450)
Q Consensus 308 g~~I~~G~~vqf~~RD~~aA~~ 329 (450)
.+.+++|++|||..-+.++|.+
T Consensus 273 lAQ~~pG~~vrF~~~~~~ea~~ 294 (314)
T COG1984 273 LAQIRPGSKVRFVPISLEEALA 294 (314)
T ss_pred HhccCCCCeEEEEECCHHHHHH
Confidence 3467999999999999999884
No 10
>PF05662 YadA_stalk: Coiled stalk of trimeric autotransporter adhesin; InterPro: IPR008635 This short motif is found in invasins and haemagglutinins, normally associated with the Hep_Hag repeat (IPR008640 from INTERPRO).; GO: 0009405 pathogenesis, 0019867 outer membrane; PDB: 3NTN_A 3PR7_A 1P9H_A 3D9X_A 3LAA_A 3LA9_A 3EMO_C.
Probab=23.81 E-value=40 Score=21.50 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.9
Q ss_pred EEEeecccccccccc
Q 013065 18 ILSVVHGVMGRDALT 32 (450)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (450)
|++|+.|.-..|||+
T Consensus 3 ItnVa~G~~~tDAVN 17 (21)
T PF05662_consen 3 ITNVADGTNDTDAVN 17 (21)
T ss_dssp EESE---TTTTSB-B
T ss_pred ceeecCCCCCcccee
Confidence 899999999999986
Done!