Query 013065
Match_columns 450
No_of_seqs 153 out of 291
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fcj_A Small toprim domain pro 8.7 1.6E+02 0.0056 25.0 2.2 29 124-152 49-77 (119)
2 2qip_A Protein of unknown func 7.9 1.9E+02 0.0066 25.0 2.4 32 125-158 109-141 (165)
3 2zjd_A Microtubule-associated 5.9 1.8E+02 0.0062 25.1 1.1 20 4-23 25-44 (130)
4 1eo6_A GATE-16, golgi-associat 5.7 1.9E+02 0.0064 24.3 1.1 20 4-23 18-37 (117)
5 3m95_A Autophagy related prote 5.1 2.1E+02 0.0073 24.5 1.1 19 4-22 26-44 (125)
6 2r2q_A Gamma-aminobutyric acid 5.0 2.2E+02 0.0077 23.5 1.1 20 4-23 17-36 (110)
7 3t15_A Ribulose bisphosphate c 4.8 4.2E+02 0.014 24.8 3.1 52 102-154 13-65 (293)
8 1jgn_B PAIP2, polyadenylate-bi 4.7 2.2E+02 0.0076 17.9 0.6 11 67-77 13-23 (26)
9 3rui_B Autophagy-related prote 4.6 2.5E+02 0.0086 23.7 1.1 18 4-21 20-37 (118)
10 3h9d_A ATG8, microtubule-assoc 4.5 2.5E+02 0.0087 23.8 1.1 19 4-22 21-39 (119)
No 1
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=8.68 E-value=1.6e+02 Score=24.99 Aligned_cols=29 Identities=3% Similarity=0.106 Sum_probs=26.1
Q ss_pred CCcEEEEecCCCCChHHHHHHhhhhcCCC
Q 013065 124 SPVGIIMFGKEDMDQKPIIEKLDYAMSMN 152 (450)
Q Consensus 124 ~p~gi~~f~d~~~~~~~ll~gL~~al~~~ 152 (450)
.-++||+|-|+...|+.+.+.|...+|..
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~lp~~ 77 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMFPEA 77 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHCTTS
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHCCCC
Confidence 35899999999999999999999999864
No 2
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=7.92 E-value=1.9e+02 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=23.0
Q ss_pred CcEE-EEecCCCCChHHHHHHhhhhcCCCceeecc
Q 013065 125 PVGI-IMFGKEDMDQKPIIEKLDYAMSMNTVFVGD 158 (450)
Q Consensus 125 p~gi-~~f~d~~~~~~~ll~gL~~al~~~~vI~Gg 158 (450)
...+ |+-||+ |..|+++.|++.++..+.++|=
T Consensus 109 ~d~~vLvSgD~--DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 109 VDRVILVSGDG--DFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp CSEEEEECCCG--GGHHHHHHHHHHHCCEEEEEEC
T ss_pred CCEEEEEECCh--hHHHHHHHHHHHcCcEEEEEeC
Confidence 3444 444443 7999999999878888877763
No 3
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=5.85 E-value=1.8e+02 Score=25.12 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=15.5
Q ss_pred hhhHHHhhCCCCcEEEEeec
Q 013065 4 KMQLVKHLGLRTPIILSVVH 23 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (450)
-..|.+|...+|||||=-+.
T Consensus 25 ~~~ir~kyP~kIPVIvEk~~ 44 (130)
T 2zjd_A 25 VRLIREQHPTKIPVIIERYK 44 (130)
T ss_dssp HHHHHHHCTTEEEEEEEECT
T ss_pred HHHHHHhCCCceEEEEEEcC
Confidence 35688999999999985443
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=5.69 E-value=1.9e+02 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=15.6
Q ss_pred hhhHHHhhCCCCcEEEEeec
Q 013065 4 KMQLVKHLGLRTPIILSVVH 23 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (450)
-..|.+|...+|||||=-+.
T Consensus 18 ~~~ir~kyP~~IPVIve~~~ 37 (117)
T 1eo6_A 18 SAKIRAKYPDRVPVIVEKVS 37 (117)
T ss_dssp HHHHHHHCTTEEEEEEEECT
T ss_pred HHHHHHHCCCeEEEEEEecC
Confidence 34678899999999986554
No 5
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=5.15 E-value=2.1e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=15.0
Q ss_pred hhhHHHhhCCCCcEEEEee
Q 013065 4 KMQLVKHLGLRTPIILSVV 22 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (450)
-..|.+|+-.+|||||--+
T Consensus 26 ~~~ir~kyP~rIPVIvEr~ 44 (125)
T 3m95_A 26 GEKIRRKYPDRVPVIVEKA 44 (125)
T ss_dssp HHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEec
Confidence 3568889999999998543
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=4.96 E-value=2.2e+02 Score=23.53 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.4
Q ss_pred hhhHHHhhCCCCcEEEEeec
Q 013065 4 KMQLVKHLGLRTPIILSVVH 23 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (450)
-..|.+|...++||||--+.
T Consensus 17 ~~~ir~k~p~~IPVive~~~ 36 (110)
T 2r2q_A 17 GEKIRKKYPDRVPVIVEKAP 36 (110)
T ss_dssp HHHHHHHCTTEEEEEEEECT
T ss_pred HHHHHHhCCCceEEEEEecC
Confidence 34678889999999986554
No 7
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=4.85 E-value=4.2e+02 Score=24.78 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=37.8
Q ss_pred Cccccceeec-cccccccccCCCCCcEEEEecCCCCChHHHHHHhhhhcCCCce
Q 013065 102 VPMIDQFVMD-IQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTV 154 (450)
Q Consensus 102 ~~~~d~f~~~-i~~~~~~~s~~~~p~gi~~f~d~~~~~~~ll~gL~~al~~~~v 154 (450)
..++|+.+.. +|+|.. ..+...|.++++.|.+.+-=..+.+.+...++..++
T Consensus 13 ~~~~~~~~~~~~k~~l~-~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLK-LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp HHHHHHHHHHHHHTTSC-CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3667776666 467765 445567899999999866666778888888877765
No 8
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=4.66 E-value=2.2e+02 Score=17.86 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=8.4
Q ss_pred ccCCcccccee
Q 013065 67 YLPGLKVDAIP 77 (450)
Q Consensus 67 ~~pg~~~~~~~ 77 (450)
|.||.|-..|.
T Consensus 13 f~pgvkygni~ 23 (26)
T 1jgn_B 13 FVPGVKYGNIX 23 (26)
T ss_dssp CCTTSCTTCC-
T ss_pred cCCCceeccee
Confidence 78999988764
No 9
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=4.58 E-value=2.5e+02 Score=23.73 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.5
Q ss_pred hhhHHHhhCCCCcEEEEe
Q 013065 4 KMQLVKHLGLRTPIILSV 21 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (450)
-..|.+|+--+|||||--
T Consensus 20 ~~~ir~kyP~riPVIvE~ 37 (118)
T 3rui_B 20 SERIADRFKNRIPVICEK 37 (118)
T ss_dssp HHHHHHHCSSEEEEEEEE
T ss_pred HHHHHHhCCCceEEEEEe
Confidence 356888999999999854
No 10
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=4.52 E-value=2.5e+02 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=14.8
Q ss_pred hhhHHHhhCCCCcEEEEee
Q 013065 4 KMQLVKHLGLRTPIILSVV 22 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (450)
-..|.+|+--+|||||--+
T Consensus 21 ~~~ir~kyP~rIPVIvEr~ 39 (119)
T 3h9d_A 21 AAKVRERHPDRLPIICEKV 39 (119)
T ss_dssp HHHHHHHSTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEec
Confidence 3567889999999998543
Done!