Query 013065
Match_columns 450
No_of_seqs 153 out of 291
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 03:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013065.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013065hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1icpa_ c.1.4.1 (A:) 12-oxophy 12.2 58 0.0042 30.0 3.2 12 72-83 1-12 (364)
2 d1ttza_ c.47.1.1 (A:) Hypothet 11.6 50 0.0036 23.8 1.9 16 4-19 36-51 (75)
3 d1ybha1 c.31.1.3 (A:281-459) A 10.4 60 0.0044 26.4 2.3 58 5-70 38-95 (179)
4 d1uf3a_ d.159.1.6 (A:) Hypothe 10.2 1E+02 0.0074 24.3 3.7 35 125-159 5-42 (228)
5 d3d32a1 d.15.1.3 (A:1-118) GAB 7.0 68 0.0049 25.3 1.1 19 4-22 20-38 (118)
6 d2ez9a1 c.31.1.3 (A:183-365) P 6.9 1.2E+02 0.009 24.6 2.9 55 5-67 49-103 (183)
7 d1ozha1 c.31.1.3 (A:188-366) C 6.0 1.5E+02 0.011 23.9 2.8 16 136-151 135-150 (179)
8 d1eo6a_ d.15.1.3 (A:) Golgi-as 5.9 84 0.0061 24.6 1.1 18 4-21 18-35 (116)
9 d2zjda1 d.15.1.3 (A:2-120) Mic 5.7 87 0.0064 24.5 1.1 17 5-21 20-36 (119)
10 d1gqna_ c.1.10.1 (A:) Type I 3 5.4 86 0.0063 27.3 1.0 44 391-448 191-234 (252)
No 1
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=12.21 E-value=58 Score=29.96 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=11.4
Q ss_pred cccceecccccc
Q 013065 72 KVDAIPLLRRKE 83 (450)
Q Consensus 72 ~~~~~~~~~~~~ 83 (450)
|||.||||.|-+
T Consensus 1 ~~~~~pLFsP~~ 12 (364)
T d1icpa_ 1 QVDKIPLMSPCK 12 (364)
T ss_dssp CCCCCGGGSCEE
T ss_pred CCCCCCCCCCce
Confidence 799999999999
No 2
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}
Probab=11.56 E-value=50 Score=23.79 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.8
Q ss_pred hhhHHHhhCCCCcEEE
Q 013065 4 KMQLVKHLGLRTPIIL 19 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (450)
...|.+|+|-+||||.
T Consensus 36 d~~l~~~y~~~IPVl~ 51 (75)
T d1ttza_ 36 DAALESAYGLRVPVLR 51 (75)
T ss_dssp CHHHHHHHTTTCSEEE
T ss_pred CHHHHHHhCCeeeEEE
Confidence 4578899999999996
No 3
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=10.35 E-value=60 Score=26.44 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=35.0
Q ss_pred hhHHHhhCCCCcEEEEeeccccccccccchhhheeeccccCCCCcccccccCCccceEEEEeccCC
Q 013065 5 MQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPG 70 (450)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~pg 70 (450)
..|++++| +||++|. +|++.+.+.|.-.. +..+...++..+.+-++.=+||++|.--+
T Consensus 38 ~~lae~~~--~Pv~tt~----~~~g~~~~~h~~~~--G~~G~~g~~~~~~~~~~aDlil~lG~~l~ 95 (179)
T d1ybha1 38 GRFVELTG--IPVASTL----MGLGSYPCDDELSL--HMLGMHGTVYANYAVEHSDLLLAFGVRFD 95 (179)
T ss_dssp HHHHHHHC--CCEEECT----TTTTSSCTTSTTEE--EECSTTSCHHHHHHHHHCSEEEEESCCCC
T ss_pred HHHHhhhc--ccceecc----cccCCCcccccccc--ccCCCcCCHHHHHHHHhhhhhhhcccccc
Confidence 46788887 6888764 67788877776444 11111112233344445678999997544
No 4
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=10.20 E-value=1e+02 Score=24.33 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCChHHH---HHHhhhhcCCCceeeccc
Q 013065 125 PVGIIMFGKEDMDQKPI---IEKLDYAMSMNTVFVGDE 159 (450)
Q Consensus 125 p~gi~~f~d~~~~~~~l---l~gL~~al~~~~vI~Gg~ 159 (450)
++.|+++||-+.|.+.| ++..+..=+.-++++|++
T Consensus 5 ~~~i~~~sd~hg~~eale~~~~~~~~~~~D~vv~~GDl 42 (228)
T d1uf3a_ 5 VRYILATSNPMGDLEALEKFVKLAPDTGADAIALIGNL 42 (228)
T ss_dssp CCEEEEEECCTTCHHHHHHHHTHHHHHTCSEEEEESCS
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHhhcCCCEEEECCCC
Confidence 57888889987775543 333333323446677776
No 5
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=68 Score=25.26 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.1
Q ss_pred hhhHHHhhCCCCcEEEEee
Q 013065 4 KMQLVKHLGLRTPIILSVV 22 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (450)
-..+.+|...|+||||--+
T Consensus 20 s~~i~~KyPdriPVIve~~ 38 (118)
T d3d32a1 20 GEKIRKKYPDRVPVIVEKA 38 (118)
T ss_dssp HHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHHCCCCceEEEEEc
Confidence 3568899999999998643
No 6
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=6.94 E-value=1.2e+02 Score=24.62 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=29.4
Q ss_pred hhHHHhhCCCCcEEEEeeccccccccccchhhheeeccccCCCCcccccccCCccceEEEEec
Q 013065 5 MQLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGY 67 (450)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 67 (450)
..|++++| +||++| .+|++.+.+.+.-.+ +.-+...++..+.+=.+.-++|.+|.
T Consensus 49 ~~lae~~~--~Pv~tt----~~~~g~~~~~hp~~~--G~~G~~~~~~~~~~i~~aDlil~vG~ 103 (183)
T d2ez9a1 49 EQLSKTLK--IPLMST----YPAKGIVADRYPAYL--GSANRVAQKPANEALAQADVVLFVGN 103 (183)
T ss_dssp HHHHHHHT--CCEEEC----GGGTTSSCTTCTTBC--CCCSSSSCHHHHHHHHHCSEEEEESC
T ss_pred HHHhhccc--eEEEee----ccccccccccCcccc--ccccccccHHHHhhhhccCceEEeec
Confidence 46777876 676654 467777777766433 11111111112222224568999985
No 7
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.03 E-value=1.5e+02 Score=23.86 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=11.7
Q ss_pred CChHHHHHHhhhhcCC
Q 013065 136 MDQKPIIEKLDYAMSM 151 (450)
Q Consensus 136 ~~~~~ll~gL~~al~~ 151 (450)
.|.+..|+.|..++..
T Consensus 135 gD~~~~l~~L~~~l~~ 150 (179)
T d1ozha1 135 GDIAGTLNKLAQNIDH 150 (179)
T ss_dssp SCHHHHHHHHHHTCCS
T ss_pred eCHHHHHHHHHHhhhc
Confidence 4677888888877754
No 8
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.93 E-value=84 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.4
Q ss_pred hhhHHHhhCCCCcEEEEe
Q 013065 4 KMQLVKHLGLRTPIILSV 21 (450)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (450)
-..|.+|...|+||||--
T Consensus 18 s~~i~~KyP~rIPVIve~ 35 (116)
T d1eo6a_ 18 SAKIRAKYPDRVPVIVEK 35 (116)
T ss_dssp HHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHCCCCceEEEEE
Confidence 346788999999999863
No 9
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.74 E-value=87 Score=24.55 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=13.9
Q ss_pred hhHHHhhCCCCcEEEEe
Q 013065 5 MQLVKHLGLRTPIILSV 21 (450)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (450)
..+.+|...|+||||--
T Consensus 20 ~~i~~KyP~riPVIve~ 36 (119)
T d2zjda1 20 RLIREQHPTKIPVIIER 36 (119)
T ss_dssp HHHHHHCTTEEEEEEEE
T ss_pred HHHHHHCCCcceEEEEE
Confidence 45889999999999843
No 10
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}
Probab=5.45 E-value=86 Score=27.34 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccceeEeeeecCCCC
Q 013065 391 FFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAP 448 (450)
Q Consensus 391 v~e~lp~vPlaGFy~~GEIgP~~~~~v~g~~~~~~~~~~~~LH~yT~v~~l~se~p~~ 448 (450)
+++..++.|+++ ||.||.|.. ++. -+.+.|-..||+.+.+..+|
T Consensus 191 ~~~~~~~~P~I~-~~MG~~G~~-SRi------------~~~~~GS~~tya~~~~~sAP 234 (252)
T d1gqna_ 191 MQQHYADRPVIT-MSMAKEGVI-SRL------------AGEVFGSAATFGAVKQASAP 234 (252)
T ss_dssp HHHHTCSSCCEE-EECTTTTHH-HHH------------CHHHHTCCEEECBSSSCCST
T ss_pred HHHhCCCCCEEE-EecCCcchh-HHH------------HHHHhCCceEeccCCCCCCC
Confidence 345667899999 999999871 111 23445666677777665554
Done!