BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013066
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/432 (81%), Positives = 398/432 (92%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
R+RKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T+VAE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/432 (81%), Positives = 398/432 (92%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/432 (81%), Positives = 398/432 (92%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/432 (81%), Positives = 398/432 (92%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/432 (81%), Positives = 397/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/432 (81%), Positives = 397/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR+IQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/432 (81%), Positives = 396/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGF VFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/432 (80%), Positives = 395/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGF VFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/432 (80%), Positives = 395/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGF VFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/432 (80%), Positives = 395/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGF VFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/432 (80%), Positives = 395/432 (91%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
RIRKLAD CTGLQGF VFH+ VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRFDGALNVD+TEFQTNLVPYPR HF L++YAPVISAEKAYHEQLSV+EITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINY+PP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPP 360
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
+VVPGGDLAKVQRAVCM+SN+T++AE ++R+D KFDLMY+KRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 291/433 (67%), Positives = 348/433 (80%), Gaps = 1/433 (0%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSD-KTVGGGDDAFNTFFSETGAG 59
MRE ISI++GQAG Q+GNACWELY LEHGI+PDG + GG++ F+TFF ETG G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 60 KHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
K VPRA+++DLEP VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYT+G+EI+ L
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVL 120
Query: 120 DRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 179
DRIRKLAD C GLQGFL H++ +YGKKSKL F VYP+PQVST
Sbjct: 121 DRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVST 180
Query: 180 SVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 239
SVVEPYN+VL+TH+ LEH D + ++DNEAIYD+C+R+LDI RP++ NLN L++QV+SS+T
Sbjct: 181 SVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVT 240
Query: 240 ASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPS 299
ASLRFDG+LNVD+ EFQTNLVPYPRIHF L SY+PV+S KA+HE SVSEITN+ FEP
Sbjct: 241 ASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPG 300
Query: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQP 359
+ M KCDPR GKYMA CL+YRGDVV +DV AV +K K+T+Q VDWCPTGFK GI Y+P
Sbjct: 301 NQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEP 360
Query: 360 PSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFS 419
P+ P LA V RAVCM+SN+TS+AE + RID+KFDLMY+KRAFVHWYVGEGMEEGEF+
Sbjct: 361 PTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFT 420
Query: 420 EAREDLAALEKDY 432
EAREDLAALE+DY
Sbjct: 421 EAREDLAALERDY 433
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEAAGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 171/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 358 bits (919), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 257/432 (59%), Gaps = 10/432 (2%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E K
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQL--ERINVYYNEATGNK 58
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
+RK +++C LQGF + H++ +Y + F+V PSP+VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VVEPYN+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
LRF G LN D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP
Sbjct: 299 MMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP 358
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++ + I NST++ E+F RI ++F M+ ++AF+HWY GEGM+E EF+E
Sbjct: 359 R--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 421 AREDLAALEKDY 432
A ++ L +Y
Sbjct: 411 AESNMNDLVSEY 422
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 175/436 (40%), Positives = 254/436 (58%), Gaps = 18/436 (4%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDD----AFNTFFSET 56
MRE I I GQ G Q+G A WE C EHG+ +G T G DD N +F+E
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNG------TYHGHDDIQKERLNVYFNEA 54
Query: 57 GAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
+GK VPR++ +DLEP ID VR A LF P+ I G+ A N +A+GHYT G E+VD
Sbjct: 55 SSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVD 114
Query: 117 LCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ 176
+D IR+ A+ C LQGF + H++ ++ + F+V PSP+
Sbjct: 115 SVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPK 174
Query: 177 VSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVIS 236
S + VEPYN+ LS H L+EH+D + +DNEA+YDIC+R+L + +P+Y +LN LVS V+S
Sbjct: 175 RSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMS 234
Query: 237 SLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAF 296
+T SLR+ G LN D+ + NLVP+PR+HF + YAP+ + L+V E+T F
Sbjct: 235 GVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMF 294
Query: 297 EPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGIN 356
+ +MMA DPR+G+Y+ +RG V K+V + +++K + FV+W P + +
Sbjct: 295 DAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV- 353
Query: 357 YQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEG 416
SV P G + A I+NSTS+ E+F R+ +F M+ ++AF+HWY EGM+E
Sbjct: 354 ---CSVAPQG----LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDEL 406
Query: 417 EFSEAREDLAALEKDY 432
EFSEA ++ L +Y
Sbjct: 407 EFSEAESNMNDLVSEY 422
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 243/432 (56%), Gaps = 15/432 (3%)
Query: 5 ISIHIGQAGIQVGNACWELYCLEHGIQP-DGQMLSDKTVGGGDDAFNTFFSETGAGKHVP 63
I + IGQAG Q+ + W+ CLEHGI P GQ G +F + E+ +G +VP
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVP 66
Query: 64 RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIR 123
RA+ +DLEP+VID V+ + LF+P LIS E A NFA G+ G+E++ + R+
Sbjct: 67 RAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLD 125
Query: 124 KLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVE 183
D C + G +V HA+ YG+ L V PSPQVS+ V E
Sbjct: 126 YEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTE 185
Query: 184 PYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243
PYN+V + ++L D ++ DNEA++D+ R +IE PT +LN L+++ ++ +TAS+R
Sbjct: 186 PYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR 245
Query: 244 FDGALNVDVT--EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSM 301
F G L V+++ E TNLVP P +HF++ ++AP+ +++ E+L + E+ S F+ S+
Sbjct: 246 FSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSV 305
Query: 302 MAKCDPRHGKYMACCLMYRGDVVPKDV-NAAVAAIKTKRTIQFVDWCPTGFKCGINYQPP 360
A C P G++++ ++YRG + K + +AA+AA++ K + + W PT FK G QP
Sbjct: 306 FAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVEQPG 363
Query: 361 SVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSE 420
++++ +++N+T +A V RI FD ++ ++AF +WY+ EGM E + +
Sbjct: 364 --------ISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINV 415
Query: 421 AREDLAALEKDY 432
R L + Y
Sbjct: 416 LRASAQELVQSY 427
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 235/434 (54%), Gaps = 14/434 (3%)
Query: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGK 60
+RE +SIH+GQ G Q+ ++ W L EHG+ G L + + + FF + GK
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAG-TLKEGSNAAANSNMEVFFHKVRDGK 59
Query: 61 HVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRAV +DLEP VI + G QLF ++ AANN+ARG+ G++++D ++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 121 RIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
I + GLQGFL+ H++ Y KK F+V PSP +S S
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 181 VVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
VEPYN++L+ +L++ D +VLLDNEA++ I + L+ P Y +LN +++ ++SS+TA
Sbjct: 180 AVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTA 238
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSS 300
SLRF G LN D++EF TNLVP+P HF+ +S+AP+ A + + + ++ F +
Sbjct: 239 SLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDN 298
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPT--GFKCGINYQ 358
A D + G Y+A ++RGDV KDV+ +A I ++++ + + P G K G
Sbjct: 299 FTAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAET 356
Query: 359 PPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEF 418
P LA V N T +A VF R+ +FD+M+ A+ HWY G+
Sbjct: 357 APEGFASSGLALV--------NHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMM 408
Query: 419 SEAREDLAALEKDY 432
++AR +A L + Y
Sbjct: 409 AKARNQIATLAQSY 422
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 232/441 (52%), Gaps = 18/441 (4%)
Query: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKH 61
RE I++ +GQ G Q+G W+ C EHGI P+ + ++ G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEA--IVEEFATEGTDRKDVFFYQADDEHY 60
Query: 62 VPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCL 119
+PRAV LDLEP VI + Y +L++PE + + A NN+A G ++ G++I +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVS 178
D I + AD L+GF++ H++ Y KK ++V+P+ ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 TSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238
VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVSEITNSAFE 297
T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 298 PSSMMAKCDPRHGK---YMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCG 354
P ++M Y+A + +G+V P V+ ++ I+ ++ F+ W P +
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 355 INYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGME 414
++ + P + ++ + M++N TS++ +F R +++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 415 EGEFSE---AREDLAALEKDY 432
+ F E +RE + L +Y
Sbjct: 415 KDNFDEMDTSREIVQQLIDEY 435
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 232/441 (52%), Gaps = 18/441 (4%)
Query: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKH 61
RE I++ +GQ G Q+G W+ C EHGI P+ + ++ G D + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEA--IVEEFATEGTDRKDVFFYQADDEHY 60
Query: 62 VPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCL 119
+PRAV LDLEP VI + Y +L++PE + + A NN+A G ++ G++I +
Sbjct: 61 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF 119
Query: 120 DRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVS 178
D I + AD L+GF++ H++ Y KK ++V+P+ ++S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 179 TSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238
VV+PYNS+L+ L ++ D V+LDN A+ I L I+ P+++ +N+LVS ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVSEITNSAFE 297
T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + + A + +V ++ +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 298 PSSMMAKCDPRHGK---YMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCG 354
P ++M Y+A + +G+V P V+ ++ I+ ++ F+ W P +
Sbjct: 300 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA 359
Query: 355 INYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGME 414
++ + P + ++ + M++N TS++ +F R +++D + + AF+ + E M
Sbjct: 360 LSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMF 414
Query: 415 EGEFSE---AREDLAALEKDY 432
+ F E +RE + L +Y
Sbjct: 415 KDNFDEMDTSREIVQQLIDEY 435
>pdb|2E4H|B Chain B, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 36
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 416 GEFSEAREDLAALEKDY 432
GEFSEARED+AALEKDY
Sbjct: 1 GEFSEAREDMAALEKDY 17
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 355 INYQPPSVVPGGDLAKVQRAVCM--ISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEG 412
+ +Q P VPG +A R + VAE ++++ + +L+ +++ Y+ EG
Sbjct: 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG 143
Query: 413 MEEGE 417
GE
Sbjct: 144 FSGGE 148
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 159 VDYGKKSKLGFTV----------YPSPQVS-----TSVVEPYNSVLSTHSLLEHTDVSVL 203
VD+G K+G Y +P++ T+ + +N + + LL HT V
Sbjct: 176 VDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG 235
Query: 204 LDNEAIY-DICRRSLDIERPTYTNLNRLVSQVISSL 238
DN+ Y +I + ++D T++++++L + I SL
Sbjct: 236 EDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSL 271
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 60 KHVPRAVFLDLEPTVIDEVRTGA--YRQ-LFHPE---QLISGKEDAANNFARGHYTIGKE 113
+H+ + F+ EPT+I +V T +R+ +F P + S +E+A N HY +G
Sbjct: 367 EHLKKGYFV--EPTIITDVTTSMQIWREEVFGPVLAVKTFSTEEEAINLANDTHYGLGSA 424
Query: 114 IVDLCLDRIRKLADNCTGLQGFLVF 138
++ L+R +L+ LQ +V+
Sbjct: 425 VMSNDLERCERLSK---ALQAGIVW 446
>pdb|2X17|0 Chain 0, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|1 Chain 1, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|2 Chain 2, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|3 Chain 3, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|4 Chain 4, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|5 Chain 5, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|6 Chain 6, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|7 Chain 7, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|8 Chain 8, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|9 Chain 9, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|G Chain G, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|H Chain H, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|I Chain I, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|J Chain J, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|K Chain K, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|L Chain L, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|M Chain M, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|N Chain N, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|O Chain O, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|P Chain P, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|Q Chain Q, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|R Chain R, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|Y Chain Y, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|Z Chain Z, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
Length = 173
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 381 STSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEE 415
S S+ E+ + +++ D YS RAF+ W++ E +EE
Sbjct: 98 SKSIYELAALAEEEKD--YSTRAFLEWFINEQVEE 130
>pdb|2JD6|0 Chain 0, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|1 Chain 1, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|2 Chain 2, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|3 Chain 3, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|4 Chain 4, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|5 Chain 5, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|6 Chain 6, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|7 Chain 7, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|8 Chain 8, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|9 Chain 9, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|A Chain A, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|B Chain B, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|C Chain C, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|D Chain D, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|E Chain E, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|F Chain F, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|G Chain G, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|H Chain H, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|I Chain I, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|J Chain J, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|K Chain K, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|L Chain L, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|M Chain M, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|N Chain N, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|O Chain O, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|P Chain P, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|Q Chain Q, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|R Chain R, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|S Chain S, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|T Chain T, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|U Chain U, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|V Chain V, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|W Chain W, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|X Chain X, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|Y Chain Y, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|Z Chain Z, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|0 Chain 0, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|1 Chain 1, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|2 Chain 2, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|3 Chain 3, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|4 Chain 4, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|5 Chain 5, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|6 Chain 6, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|7 Chain 7, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|8 Chain 8, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|9 Chain 9, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|A Chain A, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|B Chain B, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|C Chain C, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|D Chain D, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|E Chain E, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|F Chain F, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|G Chain G, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|H Chain H, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|I Chain I, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|J Chain J, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|K Chain K, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|L Chain L, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|M Chain M, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|N Chain N, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|O Chain O, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|P Chain P, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|Q Chain Q, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|R Chain R, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|S Chain S, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|T Chain T, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|U Chain U, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|V Chain V, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|W Chain W, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|X Chain X, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|Y Chain Y, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|Z Chain Z, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|0 Chain 0, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|1 Chain 1, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|2 Chain 2, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|3 Chain 3, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|4 Chain 4, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|5 Chain 5, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|6 Chain 6, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|7 Chain 7, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|8 Chain 8, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|9 Chain 9, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|A Chain A, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|B Chain B, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|C Chain C, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|D Chain D, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|E Chain E, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|F Chain F, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|G Chain G, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|H Chain H, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|I Chain I, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|J Chain J, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|K Chain K, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|L Chain L, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|M Chain M, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|N Chain N, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|O Chain O, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|P Chain P, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|Q Chain Q, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|R Chain R, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|S Chain S, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|T Chain T, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|U Chain U, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|V Chain V, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|W Chain W, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|X Chain X, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|Y Chain Y, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|Z Chain Z, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
Length = 174
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 381 STSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEE 415
S S+ E+ + +++ D YS RAF+ W++ E +EE
Sbjct: 98 SKSIYELAALAEEEKD--YSTRAFLEWFINEQVEE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,178,723
Number of Sequences: 62578
Number of extensions: 481876
Number of successful extensions: 1132
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 33
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)