Query 013066
Match_columns 450
No_of_seqs 178 out of 1350
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 1E-131 2E-136 948.8 32.2 438 1-445 1-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 2E-115 3E-120 901.2 34.9 450 1-450 1-450 (450)
3 PTZ00335 tubulin alpha chain; 100.0 2E-113 3E-118 886.0 34.8 442 1-442 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 3E-109 6E-114 855.5 33.6 429 1-439 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 6E-109 1E-113 854.8 34.3 428 1-438 1-428 (447)
6 cd02186 alpha_tubulin The tubu 100.0 9E-109 2E-113 849.9 33.1 434 2-435 1-434 (434)
7 PLN00222 tubulin gamma chain; 100.0 3E-107 6E-112 839.8 34.5 432 1-440 2-446 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 3E-107 7E-112 835.4 31.6 423 2-432 1-431 (431)
9 cd02187 beta_tubulin The tubul 100.0 2E-106 4E-111 831.0 33.9 424 2-435 1-424 (425)
10 PTZ00387 epsilon tubulin; Prov 100.0 9E-106 2E-110 829.1 33.2 417 1-438 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 7E-104 1E-108 757.7 29.5 430 1-438 2-442 (448)
12 cd02189 delta_tubulin The tubu 100.0 5.3E-99 1E-103 779.7 32.4 412 4-433 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 6.8E-99 1E-103 763.9 29.3 379 2-435 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 6.4E-91 1.4E-95 709.8 30.7 382 3-434 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 3.4E-84 7.3E-89 620.1 18.8 406 1-429 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 2.9E-71 6.3E-76 533.7 15.1 344 45-436 7-350 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 5.1E-65 1.1E-69 510.3 25.7 328 3-381 1-328 (328)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 5.1E-51 1.1E-55 385.4 10.8 215 3-225 1-215 (216)
19 cd06060 misato Human Misato sh 100.0 9.1E-49 2E-53 405.1 27.8 414 2-434 1-493 (493)
20 smart00864 Tubulin Tubulin/Fts 100.0 2.2E-37 4.8E-42 287.2 9.6 185 51-246 3-192 (192)
21 KOG2530 Members of tubulin/Fts 100.0 7.3E-34 1.6E-38 279.9 11.7 239 1-257 1-324 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 2.1E-32 4.6E-37 274.8 15.3 221 1-272 1-233 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 2.7E-27 5.9E-32 233.5 14.2 207 1-260 1-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 7.8E-26 1.7E-30 226.6 12.4 206 4-261 20-225 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 2.3E-25 5E-30 220.7 12.4 209 4-263 3-211 (304)
26 PRK13018 cell division protein 99.9 1.1E-23 2.5E-28 211.8 13.7 205 4-260 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 6.4E-24 1.4E-28 183.7 10.0 125 263-392 1-125 (126)
28 PF14881 Tubulin_3: Tubulin do 99.9 4.4E-22 9.6E-27 181.6 11.3 149 84-244 17-180 (180)
29 PRK09330 cell division protein 99.9 1.5E-21 3.2E-26 196.7 12.0 207 3-260 15-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 1.6E-14 3.4E-19 122.6 5.0 69 2-78 1-73 (115)
31 COG0206 FtsZ Cell division GTP 99.4 2E-12 4.4E-17 128.0 12.8 147 108-263 75-221 (338)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.1E-07 2.4E-12 80.7 2.9 114 248-392 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.7 0.00074 1.6E-08 68.5 13.5 102 94-196 100-219 (345)
34 PRK14484 phosphotransferase ma 73.2 3.4 7.3E-05 35.5 2.9 41 116-160 42-83 (124)
35 PF06908 DUF1273: Protein of u 72.2 15 0.00032 33.6 7.1 109 114-240 27-135 (177)
36 PF03610 EIIA-man: PTS system 71.8 5.2 0.00011 33.5 3.8 33 114-146 39-71 (116)
37 cd00006 PTS_IIA_man PTS_IIA, P 63.9 9.9 0.00022 32.2 4.0 32 114-145 39-70 (122)
38 PLN02847 triacylglycerol lipas 63.4 25 0.00055 38.1 7.6 116 49-170 153-287 (633)
39 TIGR00824 EIIA-man PTS system, 62.5 11 0.00024 31.7 4.0 33 114-146 40-72 (116)
40 PF12953 DUF3842: Domain of un 60.9 8 0.00017 33.2 2.8 44 143-200 6-50 (131)
41 PRK09461 ansA cytoplasmic aspa 50.3 48 0.001 33.5 6.9 95 110-211 63-157 (335)
42 TIGR02364 dha_pts dihydroxyace 50.0 16 0.00034 31.4 2.9 40 116-158 42-83 (125)
43 cd00741 Lipase Lipase. Lipase 47.3 32 0.00069 29.9 4.5 64 106-173 2-65 (153)
44 PF00710 Asparaginase: Asparag 43.1 85 0.0018 31.3 7.4 93 110-210 54-147 (313)
45 PRK13660 hypothetical protein; 42.5 1E+02 0.0022 28.3 7.1 111 114-242 27-137 (182)
46 cd00411 Asparaginase Asparagin 39.1 97 0.0021 31.1 7.1 94 110-211 60-155 (323)
47 PF01713 Smr: Smr domain; Int 36.7 1.3E+02 0.0029 23.2 6.2 55 116-173 9-69 (83)
48 COG0572 Udk Uridine kinase [Nu 35.4 39 0.00084 32.0 3.3 27 137-164 9-35 (218)
49 cd00519 Lipase_3 Lipase (class 34.0 43 0.00093 31.3 3.5 62 104-169 100-161 (229)
50 PF03283 PAE: Pectinacetyleste 33.8 96 0.0021 31.7 6.1 50 107-163 132-183 (361)
51 PF12210 Hrs_helical: Hepatocy 31.5 26 0.00056 28.5 1.2 54 377-435 27-89 (96)
52 PRK15088 PTS system mannose-sp 31.2 59 0.0013 32.6 4.0 33 114-146 41-73 (322)
53 PF03141 Methyltransf_29: Puta 28.5 1.1E+02 0.0023 32.7 5.4 34 133-175 116-149 (506)
54 PF01764 Lipase_3: Lipase (cla 28.0 57 0.0012 27.5 2.9 55 113-171 45-101 (140)
55 smart00870 Asparaginase Aspara 27.8 1.8E+02 0.004 29.1 6.9 95 111-211 58-155 (323)
56 TIGR00519 asnASE_I L-asparagin 27.6 1.3E+02 0.0029 30.3 5.9 96 110-212 59-159 (336)
57 COG2156 KdpC K+-transporting A 27.3 1.1E+02 0.0023 28.2 4.5 51 98-153 84-134 (190)
58 PF02353 CMAS: Mycolic acid cy 27.2 1E+02 0.0022 30.1 4.8 64 101-171 29-93 (273)
59 TIGR02153 gatD_arch glutamyl-t 27.0 2E+02 0.0044 29.8 7.2 91 110-207 120-211 (404)
60 KOG3178 Hydroxyindole-O-methyl 26.7 53 0.0012 33.2 2.8 42 124-170 167-208 (342)
61 PF08259 Periviscerokin: Periv 25.6 30 0.00065 16.6 0.4 8 257-264 3-10 (11)
62 PF02879 PGM_PMM_II: Phosphogl 24.7 51 0.0011 26.7 1.9 27 133-159 20-46 (104)
63 PF09370 TIM-br_sig_trns: TIM- 24.4 40 0.00088 32.7 1.4 32 117-156 2-33 (268)
64 PTZ00489 glutamate 5-kinase; P 23.2 3.4E+02 0.0073 26.4 7.6 48 157-206 87-134 (264)
65 TIGR01732 tiny_TM_bacill conse 22.4 57 0.0012 19.9 1.2 13 142-154 1-13 (26)
66 PF00891 Methyltransf_2: O-met 21.5 1.8E+02 0.0039 27.3 5.3 35 127-166 93-127 (241)
67 PRK04183 glutamyl-tRNA(Gln) am 21.2 3E+02 0.0064 28.8 7.1 90 110-207 133-223 (419)
68 COG0252 AnsB L-asparaginase/ar 20.4 2.3E+02 0.005 28.9 5.9 96 111-211 81-177 (351)
69 KOG2369 Lecithin:cholesterol a 20.3 1.1E+02 0.0023 32.4 3.5 57 98-160 146-206 (473)
70 PF13508 Acetyltransf_7: Acety 20.2 1.1E+02 0.0023 23.0 2.8 34 132-168 29-62 (79)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=9.7e-132 Score=948.79 Aligned_cols=438 Identities=61% Similarity=1.070 Sum_probs=422.7
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
||||||||+||||||||++||+++|.||||.++|....... .+.++.++||+|++.++||||||+||+||+||+.++.
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 99999999999999999999999999999999999765443 3568999999999999999999999999999999999
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
|+|+.+|+|+|++.+++|+|||||+|+|++|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||||.+.+|+|+|.++.++++|||||++|++++|.|++|+++++||++|+++|.+.+++++|+|.++|++||++|+++|.
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccc
Q 013066 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||++|+||.+|.+||+|+||+||+.++|+|+++..+..+++.++.++++++|+|+|||.+|+|+.++|+++++++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhc
Q 013066 321 GDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYS 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~ 400 (450)
|++.++++++++.+++.|++.+|++|+|++|++++|+.+|.. ..+.+.++++|+|+|+|...|+++.+||++||+
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~ 393 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK 393 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999998832 334589999999999999999999999999999
Q ss_pred cccceeccccCCcccccHHHHHHHHHHHHHHHHHHcccCCCCCcc
Q 013066 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGEEE 445 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~~~~~~~ 445 (450)
||||||||+++||||+||.||++++++|.++|++++++.-+++++
T Consensus 394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence 999999999999999999999999999999999998776655554
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.5e-115 Score=901.25 Aligned_cols=450 Identities=96% Similarity=1.485 Sum_probs=426.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|............+..++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999887543322111245789999999999999999999999999999999
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
++++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccc
Q 013066 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.++.||+++++||||||++||++++++|+++..+..+++++|.+|++++|++++++++++|+.++|+|+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhc
Q 013066 321 GDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYS 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~ 400 (450)
|++.+.++.+.+.+++.+++..|++|+|+++++++|.++|...+...+.++++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888888999999999999999999987777666777789999999999999999999999999999
Q ss_pred cccceeccccCCcccccHHHHHHHHHHHHHHHHHHcccCCCCCcccCCCC
Q 013066 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADGEEEEGDEY 450 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 450 (450)
||||||||+++||||+||.||+++|++|+++|+++..+..+++-||+.||
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~~ 450 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEEY 450 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 99999999999999999999999999999999999988888888888876
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.5e-113 Score=885.97 Aligned_cols=442 Identities=93% Similarity=1.458 Sum_probs=417.4
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|............+..++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322111245788999999999999999999999999999999
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999866799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccc
Q 013066 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|++++++++++|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhc
Q 013066 321 GDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYS 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~ 400 (450)
|++.+.++.+.+.+++.+++..|++|+|+++++++|.++|...+...+.+.++++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999999988777666767789999999999999999999999999999
Q ss_pred cccceeccccCCcccccHHHHHHHHHHHHHHHHHHcccCCCC
Q 013066 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADG 442 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~~~~ 442 (450)
||||||||+++||||+||.||+++|++|+++|+++..+.++|
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999999997555544
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.6e-109 Score=855.50 Aligned_cols=429 Identities=43% Similarity=0.839 Sum_probs=407.6
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|.....++. ..+..++||+|+..++|+||+|+||+||++|+.++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999988865443221 235678999999999999999999999999999998
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
++++.+|+|++++.+++|+|||||+|||..|+++.++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999999876889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccc
Q 013066 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.+|.||.++++||||||++||++++++|+.+..+..++.+++.+|++++|++++++++++|+.++|+|+++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777789999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhc
Q 013066 321 GDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYS 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~ 400 (450)
|++.+.++.+.+..++.++++.|++|+|++|++++|.++|.. .++++++++|+|+|..+|+++.++|++||+
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~--------~~~s~~~lsNstsi~~~~~~i~~~f~~m~~ 390 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKG--------LKMSVTFIGNSTAIQEMFRRVGEQFTAMFR 390 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcC--------ccceEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999888888899999999999999999988753 268899999999999999999999999999
Q ss_pred cccceeccccCCcccccHHHHHHHHHHHHHHHHHHcccC
Q 013066 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~~ 439 (450)
||||||||+++||||+||.||+++|++|+++|+++....
T Consensus 391 rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987554
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=5.9e-109 Score=854.84 Aligned_cols=428 Identities=43% Similarity=0.842 Sum_probs=406.0
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|......+. ..+..++||+|.++++|+||+|+||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999888866443221 235678999999999999999999999999999999
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
||++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999999777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccc
Q 013066 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||||.++.++.+++++|||||++||++++++|+.+.....++.+++.+++++++++++++++++|+.++|+++++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhc
Q 013066 321 GDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYS 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~ 400 (450)
|++.+.++.+.+..++.++++.|++|+|++|++++|.++|... ++++++++|+|+|..+|++++++|++||+
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~ 390 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888899999999999999999887532 67899999999999999999999999999
Q ss_pred cccceeccccCCcccccHHHHHHHHHHHHHHHHHHccc
Q 013066 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~ 438 (450)
||||||||+++||||+||.||+++|++|+++|+++...
T Consensus 391 rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred cCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988743
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=8.7e-109 Score=849.93 Aligned_cols=434 Identities=88% Similarity=1.419 Sum_probs=410.9
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccc
Q 013066 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+++++||+++++|........+...+.+++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999988865443221123457899999999999999999999999999999998
Q ss_pred cccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhc
Q 013066 82 AYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 161 (450)
+++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccc
Q 013066 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++++.+++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999998667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhcccccc
Q 013066 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (450)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (450)
+||||..+.|+++++++|||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|+.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhcc
Q 013066 322 DVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSK 401 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~r 401 (450)
++.+.++.+.+..++.++...|++|+|+++++++|+++|...+.+.+.+.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999999887776667777899999999999999999999999999999
Q ss_pred ccceeccccCCcccccHHHHHHHHHHHHHHHHHH
Q 013066 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 402 kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 435 (450)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=2.8e-107 Score=839.78 Aligned_cols=432 Identities=32% Similarity=0.592 Sum_probs=400.6
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|||||+||+||||||||.+||+++++||+++++|....+.. ...+..++||+|+++++|+||+||||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999988887643222 1245789999999999999999999999999999999
Q ss_pred ccccccCCcceeecccc--cccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhh
Q 013066 81 GAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLS 158 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~ 158 (450)
++++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||+|||||||+|++|+|.|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88889999999999986 69999999965 6999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCCC-CCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhh
Q 013066 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (450)
Q Consensus 159 deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (450)
|+||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|.+||++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 999999999999999863 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhccCCCCCcceeeecccccccccc-cccccccCHHHHHHhhcCCCCCCcccCCCC-----Cc
Q 013066 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVSEITNSAFEPSSMMAKCDPRH-----GK 311 (450)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~ 311 (450)
+|+++||||.+|+||+++++||||||++||++++++|+.+.. ...++..++.++++++++++++++.++|+. ++
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997653 345677899999999999999999998887 99
Q ss_pred chhhccccccccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHH
Q 013066 312 YMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRI 391 (450)
Q Consensus 312 ~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i 391 (450)
|+|+++++||++.+.++.+.+.+++.++++.|++|+|+++++++|.++|...+ +++.++++|+|+|+|..+|+++
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i 393 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIRHLFSKC 393 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999998876422 2367899999999999999999
Q ss_pred HHHHHHHhccccceeccccCCcc----cccHHHHHHHHHHHHHHHHHHcccCC
Q 013066 392 DQKFDLMYSKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGAESA 440 (450)
Q Consensus 392 ~~~~~~m~~rkAflH~Y~~~Gme----e~eF~ea~~~l~~li~~Y~~~~~~~~ 440 (450)
.++|++||+||||||||+++||+ ++||.||+++|++|+++|++++..+-
T Consensus 394 ~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y 446 (454)
T PLN00222 394 LSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDY 446 (454)
T ss_pred HHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999993 79999999999999999999875444
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=3e-107 Score=835.36 Aligned_cols=423 Identities=36% Similarity=0.670 Sum_probs=398.2
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccc
Q 013066 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+++++||+++++|...++.. ...+..++||+|..+++|+||+|+||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999998887644321 13457889999999999999999999999999999999
Q ss_pred cccccCCcceeecccc--cccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhh
Q 013066 82 AYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSV 159 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~d 159 (450)
+++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 8888999999999987 99999999965 69999999999999999999999999999999999999999999999999
Q ss_pred hcCCcceeEEEEecCCCC-CCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhc
Q 013066 160 DYGKKSKLGFTVYPSPQV-STSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238 (450)
Q Consensus 160 eyp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 238 (450)
+||++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998754 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccchhhhhccCCCCCcceeeecccccccccc-cccccccCHHHHHHhhcCCCCCCcccCC-CCCcchhhc
Q 013066 239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVSEITNSAFEPSSMMAKCDP-RHGKYMACC 316 (450)
Q Consensus 239 t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~ 316 (450)
|+++||||.+|.|+.++++||||||++||++++++|+.+.. ...++..+|.+|++.+++++++|++++| +.++|+|++
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999999877 5778899999999999999999999999 889999999
Q ss_pred cccccccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHH
Q 013066 317 LMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFD 396 (450)
Q Consensus 317 ~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~ 396 (450)
+++||++.+.++.+.+.+++.+.++.|++|+|+++++++|.++|...+. .+.++++++|+|+|.++|+++.++|+
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~ 392 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFD 392 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999999999999988764332 25789999999999999999999999
Q ss_pred HHhccccceeccccCCcc---cccHHHHHHHHHHHHHHH
Q 013066 397 LMYSKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 432 (450)
Q Consensus 397 ~m~~rkAflH~Y~~~Gme---e~eF~ea~~~l~~li~~Y 432 (450)
+||+||||||||+++||| ++||.||+++|++|+++|
T Consensus 393 ~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 393 KLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999 999999999999999998
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.1e-106 Score=830.95 Aligned_cols=424 Identities=43% Similarity=0.845 Sum_probs=402.0
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccc
Q 013066 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+++++||+++++|......+. ..+..++||+|..+++|+||+|+||+||++|+.++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDL--QLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccc--cccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 69999999999999999999999999999888865432221 2356789999999999999999999999999999888
Q ss_pred cccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhc
Q 013066 82 AYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 161 (450)
+++.+|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccc
Q 013066 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999998767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhcccccc
Q 013066 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (450)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (450)
+||||.+|.||.++++||||||++||++++++|+++..+..++.+++.+|++++|++++++.+++|+.++|+|+++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777889999999999999999999899999999999999999
Q ss_pred ccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhcc
Q 013066 322 DVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSK 401 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~r 401 (450)
++.+.++.+.+.+++.+.+..|++|+|+++++++|.++|.. .++++++++|+|+|..+|++++++|++||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~--------~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~k 390 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG--------LKMSATFIGNSTAIQELFKRISEQFTAMFRR 390 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCC--------cceeEEEecCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888889999999999999999987753 2688999999999999999999999999999
Q ss_pred ccceeccccCCcccccHHHHHHHHHHHHHHHHHH
Q 013066 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 402 kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 435 (450)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 391 kAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 391 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=8.5e-106 Score=829.07 Aligned_cols=417 Identities=32% Similarity=0.618 Sum_probs=390.3
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcC-CCCCCCccCCCCCCCCCCccccccccCCC-----C--ccccceeeecCCC
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHG-IQPDGQMLSDKTVGGGDDAFNTFFSETGA-----G--KHVPRAVFLDLEP 72 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~-~~~~~~~~~~~~~~~~~~~~~~~f~e~~~-----~--~~~pR~ilvD~e~ 72 (450)
|||||+||+||||||||.+||+++++||+ ++++|.. .+..++||++.+. + +|+||||+||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 6666642 3457899985432 3 4999999999999
Q ss_pred ceeeccccccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHH
Q 013066 73 TVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSL 152 (450)
Q Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~ 152 (450)
++|++++.++++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCC-----------
Q 013066 153 LLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIER----------- 221 (450)
Q Consensus 153 l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~----------- 221 (450)
|+|.|+|+||++.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 99999999999999999999986 578899999999999999999999999999999999988877663
Q ss_pred ----------------CCccchhHHHHHHhhhcccccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccc
Q 013066 222 ----------------PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQ 285 (450)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~ 285 (450)
+.|+++|++||++|+++|+++||||.+|+|+.++.+||||||++||++++++|+.+.....++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 7899999999999999999999999999999999999999999999999999998877777888
Q ss_pred cCHHHHHHhhcCCCCCCcccCCCCCcchhhccccccccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCC
Q 013066 286 LSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365 (450)
Q Consensus 286 ~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~ 365 (450)
.+|.+|+.++|++.++|+.++|+.++|+|+++++||+..+.++.+.+.+++. ...|++|+|+++++++|.++|...
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~-- 386 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQ-- 386 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCC--
Confidence 9999999999999999999999999999999999999889999988887764 488999999999999999987643
Q ss_pred CCcccccceEEEeecChhhHHHHHHHHHHHHHHhccccceeccccCCcccccHHHHHHHHHHHHHHHHHHccc
Q 013066 366 GDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 (450)
Q Consensus 366 ~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~~~ 438 (450)
++++++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|++++..
T Consensus 387 ------~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 387 ------PYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred ------ceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999999999999999 7999999999999999999999999733
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=6.6e-104 Score=757.73 Aligned_cols=430 Identities=34% Similarity=0.626 Sum_probs=402.7
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
||||||||+||||||||.+||++||.||+|.++|..+.... ++.++.++||++.+++.|+|||||||+||+||+.+.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 58999999999999999999999999999999999766443 4678999999999999999999999999999999999
Q ss_pred ccccccCCcceeecc--cccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhh
Q 013066 81 GAYRQLFHPEQLISG--KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLS 158 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~ 158 (450)
++++.+|+|+|++.. ++|+|||||.||. +|+++.|+++|.|+|++|.||+++||+++||++||||||+||.|+|.|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 999999999999864 5689999999975 5999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceeEEEEecCCC-CCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhh
Q 013066 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (450)
Q Consensus 159 deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 237 (450)
|+||||.+.+++|||... .++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+++|+|.++|++||..|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999863 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhccCCCCCcceeeecccccccccccccc--cccCHHHHHHhhcCCCCCCcccCC---CCCcc
Q 013066 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVSEITNSAFEPSSMMAKCDP---RHGKY 312 (450)
Q Consensus 238 ~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~--~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ 312 (450)
.|.++||||+++.+|..+...|+|+|++|||+++|+|+++...... +.-++.+.++.++.++++|.+..+ .+..|
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 9999999999999999999999999999999999999998765544 777889999999999999988765 33589
Q ss_pred hhhccccccccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHH
Q 013066 313 MACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRID 392 (450)
Q Consensus 313 ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~ 392 (450)
++...++.|.+.+..+...+.+++.++...|++|.|.++++++....|+.... ++.|+.+|+|+|+|..+|++++
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~ 393 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERIL 393 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887775443 5889999999999999999999
Q ss_pred HHHHHHhccccceeccccCCcccc---cHHHHHHHHHHHHHHHHHHccc
Q 013066 393 QKFDLMYSKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGAE 438 (450)
Q Consensus 393 ~~~~~m~~rkAflH~Y~~~Gmee~---eF~ea~~~l~~li~~Y~~~~~~ 438 (450)
.+|++|++||||||+|+++||+++ ||.|+++.+++++++|..+++.
T Consensus 394 ~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~ 442 (448)
T KOG1374|consen 394 GQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQP 442 (448)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999888 9999999999999999988643
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=5.3e-99 Score=779.73 Aligned_cols=412 Identities=27% Similarity=0.469 Sum_probs=377.9
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccccc
Q 013066 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY 83 (450)
Q Consensus 4 iitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~~ 83 (450)
||+||+||||||||.+||++|++||+++++|... ...+..++||+|..+++|+||+|+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 8999999999999999999999999998777532 1245678999999999999999999999999999998654
Q ss_pred --cccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhc
Q 013066 84 --RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 84 --~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 161 (450)
+++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccc
Q 013066 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++.+++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||+.|+++|+|
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999986 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-CC-------CCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhc---CCCCCCcc------
Q 013066 242 LRF-DG-------ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAF---EPSSMMAK------ 304 (450)
Q Consensus 242 ~r~-~~-------~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~------ 304 (450)
.|+ ++ ..+.++++++++|||||++||++++++|+++..+..++..+|.+|++.++ .+++++..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 987 53 35889999999999999999999999999987777889999999999865 56666554
Q ss_pred -------------cCCCCCcchhhccccccccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccc
Q 013066 305 -------------CDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKV 371 (450)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~ 371 (450)
++++.++|+++++++||+..+.++... + ++...|++|+|+++++++|.++|... +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~---~--~~~~~f~~W~p~~~~~~~~~~~~~~~------~~ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERK---F--RDPLLYVNWSPSPVRFSISSHKRSFS------KY 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHH---H--hccCcCCCcCCCCEeeeecCCCCCcC------Cc
Confidence 456789999999999998877777643 2 36688999999999999998876531 23
Q ss_pred cceEEEeecChhhHHHHHHHHHHHHHHhccccceeccccCCcccccHHHHHHHHHHHHHHHH
Q 013066 372 QRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433 (450)
Q Consensus 372 ~~s~~~l~N~t~i~~~l~~i~~~~~~m~~rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~ 433 (450)
++++++++|+|+|..+|+++++||++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 384 ~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 384 EKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=6.8e-99 Score=763.95 Aligned_cols=379 Identities=36% Similarity=0.710 Sum_probs=362.3
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccc
Q 013066 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG 81 (450)
Q Consensus 2 ~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~ 81 (450)
||||+||+||||||||.+||+.+++|| |+||+|+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 699999999999999999999999886 679999999999999999998
Q ss_pred cccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhc
Q 013066 82 AYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDY 161 (450)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 161 (450)
+++++|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccc
Q 013066 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (450)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 241 (450)
|++.+++++|+|+.. +++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|++
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 999999999999985 788999999999999999999999999999998 6999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhcccccc
Q 013066 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (450)
Q Consensus 242 ~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (450)
+||||.+|.|+.++.++|||||++||++++++|+++.....++..++.+|++.+++++++|+.++|+.++|+++++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhcc
Q 013066 322 DVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSK 401 (450)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~r 401 (450)
+..+.++.+.+.+++.+ ..|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+|
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTsI~~~f~~i~~~f~~mf~k 345 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTCIKGTFTELKERFMKLYKR 345 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccHHHHHHHHHHHHHHHHHhc
Confidence 99999998888877655 67999999999999999877532 678999999999999999999999999999
Q ss_pred ccceeccccCCcccccHHHHHHHHHHHHHHHHHH
Q 013066 402 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 402 kAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~ 435 (450)
|||||||+++||||+||+||+++|++++++|+++
T Consensus 346 rAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 346 KAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred ccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=6.4e-91 Score=709.85 Aligned_cols=382 Identities=49% Similarity=0.895 Sum_probs=362.6
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccccc
Q 013066 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGA 82 (450)
Q Consensus 3 Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~ 82 (450)
|||+||+||||||||.+||+++ |+||+||++++.++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999982 99999999999999988
Q ss_pred ccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcC
Q 013066 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 162 (450)
.+.+|+|++++.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013066 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
++.+++++|+|+...+++++++||++|+|.+|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999987656899999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccccc
Q 013066 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (450)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (450)
|+||.++.|+++++++|||||++||++++++|+++.....++..++.+++++++++++++..++++.++|+++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998777777889999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhccc
Q 013066 323 VVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKR 402 (450)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~rk 402 (450)
..+.++.+.+.+++.+.... +|+|+++++++|.++|. .+.++++++++|+|+|..+|++++++|++||+||
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~r 350 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTSIGESLERLIEKFDKLYKRK 350 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999998888887665443 89999999999998875 0226889999999999999999999999999999
Q ss_pred cceeccccCCcccccHHHHHHHHHHHHHHHHH
Q 013066 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (450)
Q Consensus 403 AflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~ 434 (450)
||||||+++||||+||.||+++|++++++|++
T Consensus 351 Aflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 351 AFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred cchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999973
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=3.4e-84 Score=620.07 Aligned_cols=406 Identities=85% Similarity=1.377 Sum_probs=388.2
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|||||.|++||.|.|||+..|+.+|.||++.++|..+.+++.....+..++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999988765543345578899999999999999999999999 999999
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
|.|+.+|||++++.|+++++||+|+|+|+.|+|+.+..+++||+.++.|..+|||.++||.|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
|+|+..+.++++|.+..+..+++|||.+|+.+...+++|+.+++||++.+.+|++.+.+++|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccc
Q 013066 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (450)
++||.|.+|.||.+|.+||||+| + ++|+.+..+..+++.++.+++...|++.++|.+|||+.|+|.++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999998889999999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHHHHHHHHhc
Q 013066 321 GDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYS 400 (450)
Q Consensus 321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~ 400 (450)
|++.|+++..++..+|.+.++.|++ ..++...+++..+..|+++|+|+|++...++-.+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 9999999999999999998888876 2346667888899999999999999999999999999999
Q ss_pred cccceeccccCCcccccHHHHHHHHHHHH
Q 013066 401 KRAFVHWYVGEGMEEGEFSEAREDLAALE 429 (450)
Q Consensus 401 rkAflH~Y~~~Gmee~eF~ea~~~l~~li 429 (450)
||||||||.++||||+||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999988763
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=2.9e-71 Score=533.73 Aligned_cols=344 Identities=41% Similarity=0.832 Sum_probs=328.6
Q ss_pred CCCccccccccCCCCccccceeeecCCCceeeccccccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHH
Q 013066 45 GDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124 (450)
Q Consensus 45 ~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~ 124 (450)
+..+++++|.+...++|+||+|+||++|++++.++++++..+|+|++ +++| .|+|..|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 45679999999999999999999999999999999999999999999 4443 8899999987776
Q ss_pred HhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeee
Q 013066 125 LADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL 204 (450)
Q Consensus 125 ~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~ 204 (450)
.||++||||++||++||||||+|+++++.|+++||.+++.+++|.|++. ++++++|||+.|++..|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred CchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccccCCCCccchhhhhccCCCCCcceeeeccccccccccccccc
Q 013066 205 DNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE 284 (450)
Q Consensus 205 ~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~ 284 (450)
||++|+++|.+.+.+..+. ++|..+||||++|.|+.++..|++|||++||+.++++|++.....++.
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999888877 899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccccccChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCC
Q 013066 285 QLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVP 364 (450)
Q Consensus 285 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~ 364 (450)
.++++++++++|+.+|++..++ ||+++.++|| +.+++++.+..++.|++..|++|+|+++|+++|..||..+
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl- 285 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL- 285 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc-
Confidence 9999999999999999999887 9999999999 8899999999999999999999999999999999998866
Q ss_pred CCCcccccceEEEeecChhhHHHHHHHHHHHHHHhccccceeccccCCcccccHHHHHHHHHHHHHHHHHHc
Q 013066 365 GGDLAKVQRAVCMISNSTSVAEVFSRIDQKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436 (450)
Q Consensus 365 ~~~~~~~~~s~~~l~N~t~i~~~l~~i~~~~~~m~~rkAflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~~~ 436 (450)
+.+.+.++|+|+|...|+++.++|.+||+||||||||+++||||+||+||..++++++.+|+++.
T Consensus 286 -------kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~ 350 (369)
T KOG1375|consen 286 -------KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 350 (369)
T ss_pred -------cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999999994
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=5.1e-65 Score=510.32 Aligned_cols=328 Identities=45% Similarity=0.821 Sum_probs=303.7
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccccc
Q 013066 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGA 82 (450)
Q Consensus 3 Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~ 82 (450)
||++||+||||||||++||+++ |+||+|+++++.+..++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999861 99999999999999888
Q ss_pred ccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcC
Q 013066 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 162 (450)
...+|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|.|||+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013066 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
++++++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+++..+.|+++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999997533 689999999999999999999999999999999988888889999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccccc
Q 013066 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (450)
Q Consensus 243 r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (450)
||||.+|.|++++.++|+|+|++||++++++|+.......+...++.++++++++++++++.++++.++++++.+++||.
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987666667788999999999999999988888889999999999999
Q ss_pred cChhhHHHHHHHhhhcCccccccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecC
Q 013066 323 VVPKDVNAAVAAIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNS 381 (450)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~ 381 (450)
....++.+....++.+.... +|+|+++++++|..++.. +.+.++++++|+
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~Ns 328 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPAS-------EHKVSALLLSNS 328 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCC-------CcCeEEEEeccC
Confidence 99999988888777665444 899999999999877641 126788999986
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=5.1e-51 Score=385.42 Aligned_cols=215 Identities=48% Similarity=0.878 Sum_probs=200.9
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccccc
Q 013066 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGA 82 (450)
Q Consensus 3 Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~ 82 (450)
|||+||+||||||||.+||+++++||+++++.. ......+.++||++...++|+||+|+||+|+++++.++.++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 899999999999999999999999999987721 11346678999999999999999999999999999999888
Q ss_pred ccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcC
Q 013066 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 162 (450)
.+++|++++++.+++|+|+||+.||+..|+++.++++|+||+++|+||.++||+++||+|||||||+++.|++.||++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCcc
Q 013066 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYT 225 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~ 225 (450)
++++++++|+|+. .++++++||++++|++|.+++|+++++||++|.++|.+.+++++|+|.
T Consensus 155 ~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 155 KKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp TSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999994 389999999999999999999999999999999999999998887775
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=9.1e-49 Score=405.06 Aligned_cols=414 Identities=19% Similarity=0.238 Sum_probs=290.7
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCC----CCccccceeeecCCCceeec
Q 013066 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETG----AGKHVPRAVFLDLEPTVIDE 77 (450)
Q Consensus 2 ~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~ilvD~e~~~i~~ 77 (450)
|||||||+||++|+||+||||. ||..+.++..-+ ....+++++|+++. ..+|+||+|++|++++....
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNL--QEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhh--hhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999999 888775443211 13567899999964 56999999999999987644
Q ss_pred cccccc----------------cccCCcceeeccc-----ccccCCCcccccc---cchhhHHHHHHHHHHHhhhcCCCc
Q 013066 78 VRTGAY----------------RQLFHPEQLISGK-----EDAANNFARGHYT---IGKEIVDLCLDRIRKLADNCTGLQ 133 (450)
Q Consensus 78 ~~~~~~----------------~~~~~~~~~~~~~-----~g~gnn~a~G~~~---~g~~~~~~~~d~ir~~~E~cD~lq 133 (450)
.+.+.+ +.+|||++++... .+.+++|++|+-. .+.+..|+++|+||+++|+||++|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 333221 2469999998553 2556677766532 245678999999999999999999
Q ss_pred ceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCC----CCcchhhhHHHHHHHHhhccCCeeeeeCch-h
Q 013066 134 GFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----STSVVEPYNSVLSTHSLLEHTDVSVLLDNE-A 208 (450)
Q Consensus 134 gf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~-~ 208 (450)
|||+++|++||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.+++|+++|+.-. .
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999997532 257899999999999999999999999743 4
Q ss_pred HHhhhh-----ccCCCCCCCccchhHHHHHHhhhcccccccCCCCccchhhhhccCCCCCcceeeecccc-ccccccccc
Q 013066 209 IYDICR-----RSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA-PVISAEKAY 282 (450)
Q Consensus 209 l~~~~~-----~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~-pl~~~~~~~ 282 (450)
+|.... ..+.++..+..+..+++|.+|.++|.|+|..+.. .+|.+|...|.+..| |+.....+ |+-..
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~---- 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV---- 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC----
Confidence 443221 2234455677788999999999999999999765 579999999987665 66655443 33221
Q ss_pred ccccCHHHHHHhhcCC--CCCCcccC-CCCCcchhhccccccccCh-------------------hhHHHHHHHhhhcCc
Q 013066 283 HEQLSVSEITNSAFEP--SSMMAKCD-PRHGKYMACCLMYRGDVVP-------------------KDVNAAVAAIKTKRT 340 (450)
Q Consensus 283 ~~~~t~~~l~~~~~~~--~~~~~~~~-~~~~~~ls~~~~~RG~~~~-------------------~~~~~~~~~~~~~~~ 340 (450)
..-.+.++.+.+-.. -.++ .++ +...++....+++||-... ..+.+.++.+.....
T Consensus 306 -~~~~l~d~L~~~~~~~~~~~l-~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~ 383 (493)
T cd06060 306 -GGQDLIDFLDQSDGAVPWLQL-TPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQY 383 (493)
T ss_pred -CCCcHHHHHHhcCCCCCcccc-CCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhcc
Confidence 112444554443111 1222 221 2346788999999994310 111112221111100
Q ss_pred -ccc--------ccCCCCCCceeeecC-CCCcC--CCCC--cc--ccc--ceEEEeecChhhHHHHHHHHHHHHHHhccc
Q 013066 341 -IQF--------VDWCPTGFKCGINYQ-PPSVV--PGGD--LA--KVQ--RAVCMISNSTSVAEVFSRIDQKFDLMYSKR 402 (450)
Q Consensus 341 -~~f--------~~w~p~~~~~~~~~~-~~~~~--~~~~--~~--~~~--~s~~~l~N~t~i~~~l~~i~~~~~~m~~rk 402 (450)
..+ +--+|.+|..-+... ...+. +... .+ ... ..++-|.|++++...|+.++.+..++--+|
T Consensus 384 ~~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r 463 (493)
T cd06060 384 PGSMSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR 463 (493)
T ss_pred CCcchhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh
Confidence 000 001122222111110 00000 0000 00 011 123458999999999999999999999999
Q ss_pred cceeccccCCcccccHHHHHHHHHHHHHHHHH
Q 013066 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (450)
Q Consensus 403 AflH~Y~~~Gmee~eF~ea~~~l~~li~~Y~~ 434 (450)
+|.|.+.|+|+|||.|+.++|.++.+.|++
T Consensus 464 --~~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 464 --KASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred --hhcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999963
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=2.2e-37 Score=287.16 Aligned_cols=185 Identities=39% Similarity=0.669 Sum_probs=171.4
Q ss_pred cccccCCCCccccceeeecCCCceeeccccccccccCCcceeecccccccCCCcccccc-----cchhhHHHHHHHHHHH
Q 013066 51 TFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT-----IGKEIVDLCLDRIRKL 125 (450)
Q Consensus 51 ~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~-----~g~~~~~~~~d~ir~~ 125 (450)
++|.++ ++.||+|++|+|+++++.+..++.+..|++.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 356664 68899999999999999988777778899999999999999999999998 8999999999999999
Q ss_pred hhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeC
Q 013066 126 ADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLD 205 (450)
Q Consensus 126 ~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~ 205 (450)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++|+|. ..|..+++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 36889999999999999999999999999
Q ss_pred chhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccccCC
Q 013066 206 NEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 246 (450)
Q Consensus 206 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 246 (450)
|++|.+.|.+.+.+ .++|.++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 77999999999999999999999986
No 21
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=7.3e-34 Score=279.85 Aligned_cols=239 Identities=22% Similarity=0.324 Sum_probs=177.1
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCcc-ccccccCC----CCccccceeeecCCCcee
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAF-NTFFSETG----AGKHVPRAVFLDLEPTVI 75 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~-~~~f~e~~----~~~~~pR~ilvD~e~~~i 75 (450)
||||+|||+|+.+|++|+||||+ ||..+.....-...+ ..... ||+|+.++ ..+|+||+|++|++..+.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~--Qea~l~~~~d~~~~~----~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g 74 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQ--QEAYLGLATDSEEPP----GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELG 74 (483)
T ss_pred CceEEEEEeeccccchhhhhcch--hhHhhccCCcccCCh----hhcCcchhhhhccccccCceeeccceeEEecCcccc
Confidence 99999999999999999999999 887665432211111 12223 89999874 349999999999999865
Q ss_pred eccccccc-------------------------------------------------------------------cccCC
Q 013066 76 DEVRTGAY-------------------------------------------------------------------RQLFH 88 (450)
Q Consensus 76 ~~~~~~~~-------------------------------------------------------------------~~~~~ 88 (450)
.....+.+ +.+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yH 154 (483)
T KOG2530|consen 75 TLKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYH 154 (483)
T ss_pred ccccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcC
Confidence 22111110 15689
Q ss_pred cceeecccc-----cccCCCcccccccch-hhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcC
Q 013066 89 PEQLISGKE-----DAANNFARGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 89 ~~~~~~~~~-----g~gnn~a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 162 (450)
|+++...+. ++-++|..|+-..-+ ...+++.|+||.++|+||.+|||+++.++.+||| |+++.++|+|+|||+
T Consensus 155 p~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys 233 (483)
T KOG2530|consen 155 PRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYS 233 (483)
T ss_pred ccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhc
Confidence 998875543 233444444433221 3568899999999999999999999999999996 999999999999999
Q ss_pred CcceeEEEEecCCC-CCCcch------hhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHh
Q 013066 163 KKSKLGFTVYPSPQ-VSTSVV------EPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVI 235 (450)
Q Consensus 163 ~~~i~~~~v~P~~~-~~~~~~------~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i 235 (450)
++.++++++.|.+. ..+... ...|.+|++.+|.+.|++++|+.--. .++ ...+..+++|.++
T Consensus 234 ~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ 302 (483)
T KOG2530|consen 234 KKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAF 302 (483)
T ss_pred CCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhc
Confidence 99999999998543 122222 25689999999999999999983211 111 3457789999999
Q ss_pred hhcccccccCCCCccchhhhhc
Q 013066 236 SSLTASLRFDGALNVDVTEFQT 257 (450)
Q Consensus 236 ~~~t~~~r~~~~~~~~l~~~~~ 257 (450)
.++|.|.|.-++.+..+.++++
T Consensus 303 ds~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 303 DSITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccccceecchhHHHHHHHHH
Confidence 9999999998886655555544
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.98 E-value=2.1e-32 Score=274.83 Aligned_cols=221 Identities=21% Similarity=0.296 Sum_probs=190.8
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|+ |..|.+|+||+.|-+++++. +. ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-------------------------~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-------------------------RSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-------------------------CcCCccceeEEEEECCHHHHHhhhc
Confidence 66 89999999999999999875 00 0123588999999999999887754
Q ss_pred ccccccCCcceeecccc-----cccCCCcccccccchhhHHHHHHHHHHHhhhcCC--CcceeEEeeCCCCccCCchHHH
Q 013066 81 GAYRQLFHPEQLISGKE-----DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTG--LQGFLVFHAVGGGTGSGLGSLL 153 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~~~~sl~GGtGSG~gs~l 153 (450)
.+.|+.++.+++ |+|+||. .|+++.++..|.||+++|.||. +|+|++++|||||||||+++.+
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~i 119 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVL 119 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHH
Confidence 346777877764 6677764 5789999999999999999997 9999999999999999999999
Q ss_pred HHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHH
Q 013066 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQ 233 (450)
Q Consensus 154 ~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~ 233 (450)
++.++++|| +++++++++|+.. +..+++||+++++++|.+++|.++++||++|.+.|.. + .+.|+++|++||+
T Consensus 120 ae~lke~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~ 192 (349)
T cd02202 120 AKELKERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIAR 192 (349)
T ss_pred HHHHHHhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHH
Confidence 999999999 8899999999974 4589999999999999999999999999999998742 2 4789999999999
Q ss_pred Hhhhccccccc-----CCCCccchhhhhccCCCCCcceeeeccc
Q 013066 234 VISSLTASLRF-----DGALNVDVTEFQTNLVPYPRIHFMLSSY 272 (450)
Q Consensus 234 ~i~~~t~~~r~-----~~~~~~~l~~~~~~L~p~p~~~fl~~~~ 272 (450)
.|..++.+.|| ||.+|.|++|+.++|.+. .+.+..+
T Consensus 193 ~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 193 RIGLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred HHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 99999999999 999999999999999765 3444444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=2.7e-27 Score=233.48 Aligned_cols=207 Identities=18% Similarity=0.272 Sum_probs=169.9
Q ss_pred CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccc
Q 013066 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80 (450)
Q Consensus 1 M~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~ 80 (450)
|+ |..|.+|+||+.+-.++++. ++ .+ .+.++||++...++.+..
T Consensus 1 ~~-i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~---~~~iainTd~~~L~~~~a 44 (303)
T cd02191 1 AK-IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EG---RSAVAVNTDAQDLLGLEA 44 (303)
T ss_pred CE-EEEEEECchHHHHHHHHHHc-----CC---------------------------CC---ccEEEEECcHHHHhcCCC
Confidence 44 78899999999999998764 00 00 478999999987766542
Q ss_pred ccccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 81 GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
. .+-++.++ .+...|+|+||+. |+++.++++|+||+.+|.||. |+++++||||||||+++.+++.++++
T Consensus 45 ~-~ki~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~ 113 (303)
T cd02191 45 E-NRVLIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRI 113 (303)
T ss_pred C-cEEecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHh
Confidence 1 11112211 1234589999875 568999999999999999994 89999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
|+ .+++|.|.+...|..+++||+.+++++|.+++|.++++||++|.++|.+ +.+. ..|+++|++||+.++++|.
T Consensus 114 ~~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~ 187 (303)
T cd02191 114 GT----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFG 187 (303)
T ss_pred CC----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHH
Confidence 95 4555555554467889999999999999999999999999999999976 7664 4999999999999999999
Q ss_pred ccccCCCCccchhhhhccCC
Q 013066 241 SLRFDGALNVDVTEFQTNLV 260 (450)
Q Consensus 241 ~~r~~~~~~~~l~~~~~~L~ 260 (450)
.+|+||.+|.|++++.+.|-
T Consensus 188 ~i~~~g~invD~~dv~~~l~ 207 (303)
T cd02191 188 AIEIEGEINVDFADVKNVMD 207 (303)
T ss_pred hhccCCcccCCHHHHHHHhc
Confidence 99999999999999988773
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=7.8e-26 Score=226.58 Aligned_cols=206 Identities=15% Similarity=0.281 Sum_probs=163.7
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccccc
Q 013066 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY 83 (450)
Q Consensus 4 iitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~~ 83 (450)
|..|.+|+||+.+-++.++. ++ .-...+.+|++...++.+... .
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a~-~ 63 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKAD-K 63 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCCC-e
Confidence 78899999999999888764 00 015678899988766554321 1
Q ss_pred cccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCC
Q 013066 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~ 163 (450)
+.++.++ .+...|+|++|+. |+++.++.+|.||+.+|.||.+ ++++|||||||||+++.+++.++ +|+
T Consensus 64 ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~~- 131 (349)
T TIGR00065 64 KILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-ELG- 131 (349)
T ss_pred EEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-HcC-
Confidence 1112221 1223478899874 6899999999999999999985 99999999999999886666655 454
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccc
Q 013066 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (450)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (450)
+..+++.++|+. .|..+++||+.+++++|.+++|+++++||++|.++|.+ +.+.. .|+.+|.+|++.+.++|.++|
T Consensus 132 ~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir 207 (349)
T TIGR00065 132 ALTVAVVTKPFK--FEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELIT 207 (349)
T ss_pred CCEEEEEeCCcc--ccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhc
Confidence 444555555554 67899999999999999999999999999999999977 77644 999999999999999999999
Q ss_pred cCCCCccchhhhhccCCC
Q 013066 244 FDGALNVDVTEFQTNLVP 261 (450)
Q Consensus 244 ~~~~~~~~l~~~~~~L~p 261 (450)
+||.+|.|+.++.+-|--
T Consensus 208 ~~g~iNvDf~dv~~vl~~ 225 (349)
T TIGR00065 208 KPGLINIDFADVRAVMSG 225 (349)
T ss_pred cCCcCcCCHHHHHHHHhc
Confidence 999999999999887743
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=2.3e-25 Score=220.69 Aligned_cols=209 Identities=14% Similarity=0.261 Sum_probs=168.3
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccccc
Q 013066 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY 83 (450)
Q Consensus 4 iitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~~ 83 (450)
|..|.+|+||+.+-+++++. ++ .+ ...+.+|++...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~---~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EG---VEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCC-Cc
Confidence 77899999999999998764 00 00 467899998887766542 12
Q ss_pred cccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCC
Q 013066 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~ 163 (450)
+.++.++. +...|+|+||+.| ++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++..+ +|+
T Consensus 47 k~~ig~~~--t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g- 114 (304)
T cd02201 47 KIQLGKEL--TRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG- 114 (304)
T ss_pred EEEcCCCC--CCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-
Confidence 22232221 2345889998855 678899999999999999975 99999999999999999776655 565
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccc
Q 013066 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (450)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (450)
+..+++.++|+. .|..+++||+.+++++|.+++|.++++||++|.+.|.+.+.+.. .|+.+|++|++.+.++|.++|
T Consensus 115 ~~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 115 ALTVAVVTKPFS--FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CCEEEEEeCCcc--ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 355555556654 57789999999999999999999999999999999977777766 899999999999999999999
Q ss_pred cCCCCccchhhhhccCCCCC
Q 013066 244 FDGALNVDVTEFQTNLVPYP 263 (450)
Q Consensus 244 ~~~~~~~~l~~~~~~L~p~p 263 (450)
+||.+|.|++++.+.|-.-.
T Consensus 192 ~~g~invD~~dv~~vl~~~G 211 (304)
T cd02201 192 KPGLINLDFADVKTVMKNKG 211 (304)
T ss_pred cCccccCCHHHHHHHhccCC
Confidence 99999999999999886443
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=1.1e-23 Score=211.77 Aligned_cols=205 Identities=18% Similarity=0.329 Sum_probs=166.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeeccccccc
Q 013066 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAY 83 (450)
Q Consensus 4 iitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~~ 83 (450)
|..|.+|+||+.+-.++++. ++ .+ ...|.||++...++.+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 78899999999999998764 10 01 4678999988766554321 1
Q ss_pred cccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCC
Q 013066 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~ 163 (450)
+-++.++ .+...|+|++|.. |++..++.+|.||+.+|.||. |+++++||||||||+++.+++.+++. +
T Consensus 75 ki~iG~~--~t~G~GaG~dp~~-----G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake~-g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPEV-----GRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKEQ-G- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChHH-----HHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHHc-C-
Confidence 1111111 1223478888665 567788999999999999997 89999999999999999999999874 3
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccc
Q 013066 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (450)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (450)
...+++++.|+. .+...+..|+.+++.+|.+++|.++++||++|.++| +.+.+.. .|+.+|++|++.+.++|.++|
T Consensus 143 ~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 556778888986 467789999999999999999999999999999999 6666654 899999999999999999999
Q ss_pred cCCCCccchhhhhccCC
Q 013066 244 FDGALNVDVTEFQTNLV 260 (450)
Q Consensus 244 ~~~~~~~~l~~~~~~L~ 260 (450)
+||.+|.|++++.+-|-
T Consensus 219 ~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 219 KPSLINLDFADVKSVMK 235 (378)
T ss_pred cCCceecCHHHHHHHhc
Confidence 99999999999988774
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=6.4e-24 Score=183.67 Aligned_cols=125 Identities=58% Similarity=1.017 Sum_probs=113.3
Q ss_pred CcceeeecccccccccccccccccCHHHHHHhhcCCCCCCcccCCCCCcchhhccccccccChhhHHHHHHHhhhcCccc
Q 013066 263 PRIHFMLSSYAPVISAEKAYHEQLSVSEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAAIKTKRTIQ 342 (450)
Q Consensus 263 p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 342 (450)
||+||++++++|+.......++..++.+|++++|+++++|++++|++|+|+|+++++||++.++++.+.+.+++.+.++.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999899
Q ss_pred cccCCCCCCceeeecCCCCcCCCCCcccccceEEEeecChhhHHHHHHHH
Q 013066 343 FVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVAEVFSRID 392 (450)
Q Consensus 343 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~i~ 392 (450)
|++|+|++||+++|+++|...+.+ +.++++|+|+|+|.+.|+++.
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~ 125 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRIS 125 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhc
Confidence 999999999999999999877543 578999999999999999986
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=4.4e-22 Score=181.58 Aligned_cols=149 Identities=26% Similarity=0.386 Sum_probs=110.9
Q ss_pred cccCCcceeeccccc-------ccCCCcccccccch-hhHHHHHHH-HHHHhhhcCCCcceeEEeeCCCCccCCchHHHH
Q 013066 84 RQLFHPEQLISGKED-------AANNFARGHYTIGK-EIVDLCLDR-IRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLL 154 (450)
Q Consensus 84 ~~~~~~~~~~~~~~g-------~gnn~a~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~ 154 (450)
+.+|||++++..++- ...+|..|.-.... +..+++.|+ ||.++|+||.+||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 456888888765431 12344444322211 223456664 9999999999999999999999997 9999999
Q ss_pred HHhhhhcCCcce-eEEEEecCCCCC-----CcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchh
Q 013066 155 ERLSVDYGKKSK-LGFTVYPSPQVS-----TSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLN 228 (450)
Q Consensus 155 e~l~deyp~~~i-~~~~v~P~~~~~-----~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N 228 (450)
|+|||||||+.+ .++++.+..... ....+.+|.++++..|.+.|++++|+.... +..+..|..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 555554433211 122457899999999999999999997200 234566999
Q ss_pred HHHHHHhhhccccccc
Q 013066 229 RLVSQVISSLTASLRF 244 (450)
Q Consensus 229 ~~ia~~i~~~t~~~r~ 244 (450)
+++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999984
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.86 E-value=1.5e-21 Score=196.69 Aligned_cols=207 Identities=16% Similarity=0.287 Sum_probs=164.6
Q ss_pred eEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCCCCccccceeeecCCCceeecccccc
Q 013066 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGA 82 (450)
Q Consensus 3 Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~ilvD~e~~~i~~~~~~~ 82 (450)
.|..|.+|+||+.+=.+.++. ++ .+ ...|.+++|...+..+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~---------------------------~~---v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI---------------------------QG---VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999988764 10 01 2568899888766544321
Q ss_pred ccccCCcceeecccccccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcC
Q 013066 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYG 162 (450)
Q Consensus 83 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 162 (450)
.+.++.++ .+...|+|++|. .|+++.++..+.||+.+|.||.+ +++++||||||||.++. +..+..+|+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC
Confidence 11112221 122347888877 56889999999999999999987 89999999999999994 556666665
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013066 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
+++++|+|.+...|..+++||+.++|++|.+++|.+|+++|++|.+++.+.+.+.. .|+.+|.+|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55666666555578899999999999999999999999999999999977666655 89999999999999999999
Q ss_pred ccCCCCccchhhhhccCC
Q 013066 243 RFDGALNVDVTEFQTNLV 260 (450)
Q Consensus 243 r~~~~~~~~l~~~~~~L~ 260 (450)
++||.+|.|+.|+.+-|-
T Consensus 204 ~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 204 TKPGLINLDFADVKTVMS 221 (384)
T ss_pred hcCCcccCCHHHHHHHHh
Confidence 999999999999988774
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.50 E-value=1.6e-14 Score=122.62 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=55.9
Q ss_pred eeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCccccccccCC----CCccccceeeecCCCceeec
Q 013066 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETG----AGKHVPRAVFLDLEPTVIDE 77 (450)
Q Consensus 2 ~Eiitiq~Gq~GnqiG~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~----~~~~~pR~ilvD~e~~~i~~ 77 (450)
|||||||+|+.+|+||+||||+ ||..+.++..... .+.+++++|+++. ..+|+||+|++|++.+....
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL 72 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSL 72 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCcCcc
Confidence 7999999999999999999999 9998865543211 2447899999973 45999999999999986544
Q ss_pred c
Q 013066 78 V 78 (450)
Q Consensus 78 ~ 78 (450)
-
T Consensus 73 ~ 73 (115)
T PF10644_consen 73 R 73 (115)
T ss_pred c
Confidence 3
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.41 E-value=2e-12 Score=128.03 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=126.9
Q ss_pred cccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHH
Q 013066 108 YTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNS 187 (450)
Q Consensus 108 ~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~ 187 (450)
...|++..++..+.|+..++.-| =++++.++|||||+|.++.+++.+++ .....++++++|+.. |...+.-|+
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~--EG~~r~~~A 147 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF--EGSPRMENA 147 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh--cCchHHHHH
Confidence 67889999999999999988766 56889999999999999999999988 478888889999974 666778899
Q ss_pred HHHHHHhhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhcccccccCCCCccchhhhhccCCCCC
Q 013066 188 VLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYP 263 (450)
Q Consensus 188 ~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~l~~~~~~L~p~p 263 (450)
..++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||..|.|+.++.+-+-...
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G 221 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGG 221 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCC
Confidence 999999999999999999999988764 2221 3368888999999999999999999999999999998876644
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.44 E-value=1.1e-07 Score=80.68 Aligned_cols=114 Identities=24% Similarity=0.387 Sum_probs=86.0
Q ss_pred CccchhhhhccCCCCCcceeeecccccccccccccccccCHHHHHH--hhcCCCCCCcccCCCCCcchhhccccccccCh
Q 013066 248 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVSEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 325 (450)
Q Consensus 248 ~~~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (450)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 3689999999999999 999999999762 34456666666 7888888777665543 666655 6788
Q ss_pred hhHHHHHHHhhhcCc-cccccCCC-CCCceeeecCCCCcCCCCCcccccceEEEeec-ChhhHHHHHHHH
Q 013066 326 KDVNAAVAAIKTKRT-IQFVDWCP-TGFKCGINYQPPSVVPGGDLAKVQRAVCMISN-STSVAEVFSRID 392 (450)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~i~ 392 (450)
.++.+.+..++.+.. ..|+.|.| ..+++ ..+.+.++| +|+|..+|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~------------------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL------------------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC------------------CCCcEEEEEEecccCccccccC
Confidence 899998888877655 77899998 33321 134578999 999999988763
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.66 E-value=0.00074 Score=68.47 Aligned_cols=102 Identities=20% Similarity=0.097 Sum_probs=62.1
Q ss_pred cccccccCCCcccccccchhhHHHHHHHHHHHhh---------hc-CCCcceeEEeeCCCCccCCchHHHHHHhhhhc--
Q 013066 94 SGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD---------NC-TGLQGFLVFHAVGGGTGSGLGSLLLERLSVDY-- 161 (450)
Q Consensus 94 ~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E---------~c-D~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey-- 161 (450)
....|+|..-+.|....- ...+++.+.|++.+. .. +.-=-+.|+.||+||||||+---++-.||+.+
T Consensus 100 ~~~~GAgq~R~~GRla~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~ 178 (345)
T PF13809_consen 100 PLSAGAGQIRALGRLAFF-SNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQ 178 (345)
T ss_pred chhcCCCCcccchHHHHH-HHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhc
Confidence 345577777776643321 222344444444444 11 00002688999999999999888888888866
Q ss_pred ---CCcceeEEEEecCCCCCC---cchhhhHHHHHHHHhhc
Q 013066 162 ---GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLLE 196 (450)
Q Consensus 162 ---p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e 196 (450)
....+..+.++|....+. ......|+.-+|.+|.-
T Consensus 179 ~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~ 219 (345)
T PF13809_consen 179 PGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDY 219 (345)
T ss_pred ccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHH
Confidence 456688899999843221 13344577666666543
No 34
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=73.17 E-value=3.4 Score=35.48 Aligned_cols=41 Identities=20% Similarity=0.467 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCch-HHHHHHhhhh
Q 013066 116 DLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLG-SLLLERLSVD 160 (450)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~g-s~l~e~l~de 160 (450)
+...++|+..+++++. +|++++.+| |||= +. ...+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp--~n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAE--MNAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChH--HHHHHHHHhcCCC
Confidence 4466889999999999 999999999 7763 33 3334555444
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=72.23 E-value=15 Score=33.60 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHH
Q 013066 114 IVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (450)
+...+.+.|+..+|+ .+. -++.+.+-|+- -.+..++-.|+.+||...+ .+++|+...+..-. -..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~--~~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWN--EANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCC--HHHHHHHHH
Confidence 445566667777774 233 23444444443 3577777789999997444 67889864332211 123344566
Q ss_pred hhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccc
Q 013066 194 LLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (450)
Q Consensus 194 l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 240 (450)
|.+.||-++.+..+...... -|..-|+.+..+=+.+.+
T Consensus 98 il~~aD~v~~vs~~~Y~~~~---------~~~~rn~fMvdhsd~~ia 135 (177)
T PF06908_consen 98 ILEQADFVVVVSERPYYSPG---------QLQKRNRFMVDHSDGLIA 135 (177)
T ss_dssp HHHH-SEEEESSSSB---HH---------HHHHHHHHHHHHSSEEEE
T ss_pred HHHhCCEEEEccCCCCCCHH---------HHHHHhHHHHhCCCeEEE
Confidence 67788888887654322111 244556666655554444
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=71.76 E-value=5.2 Score=33.54 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhhhcCCCcceeEEeeCCCCcc
Q 013066 114 IVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTG 146 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 146 (450)
-.+++.+++++.+++.+.-+|++++.++.|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 456777888888888888999999999999873
No 37
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=63.88 E-value=9.9 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhhhcCCCcceeEEeeCCCCc
Q 013066 114 IVDLCLDRIRKLADNCTGLQGFLVFHAVGGGT 145 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGt 145 (450)
-.+++.+++++.+++.+.-+|++++.++-|||
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 34567778888888888788999999999887
No 38
>PLN02847 triacylglycerol lipase
Probab=63.37 E-value=25 Score=38.09 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=64.5
Q ss_pred cccccccCCCCccccce-eeecCCCceeecccccccc------------ccCCcceeecccccccC----CCcccccccc
Q 013066 49 FNTFFSETGAGKHVPRA-VFLDLEPTVIDEVRTGAYR------------QLFHPEQLISGKEDAAN----NFARGHYTIG 111 (450)
Q Consensus 49 ~~~~f~e~~~~~~~pR~-ilvD~e~~~i~~~~~~~~~------------~~~~~~~~~~~~~g~gn----n~a~G~~~~g 111 (450)
-|+++.....+.|.|.- |++|-+.+.|=-..+|... ..|++..+ ...|..+ .=..|++...
T Consensus 153 eDVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l--~~gG~~n~~~G~AH~Gml~AA 230 (633)
T PLN02847 153 EDVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVL--HDGGVSNLVLGYAHCGMVAAA 230 (633)
T ss_pred HHEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCcccc--cccCcccCcCCccCccHHHHH
Confidence 45566555666777654 7888877765443333321 11222111 1111111 0122333333
Q ss_pred hhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhh--hcCCcceeEEE
Q 013066 112 KEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 170 (450)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~d--eyp~~~i~~~~ 170 (450)
+.+.+.+...|++.++++...+=+++=||||||+. +.+.-.|++ +||+...++|+
T Consensus 231 rwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 231 RWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 45667777788888999988887888999987764 333444454 46665555555
No 39
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=62.52 E-value=11 Score=31.68 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhhcCCCcceeEEeeCCCCcc
Q 013066 114 IVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTG 146 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 146 (450)
-.+++.+++++.+++.+.=+|++++.++-|||=
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 356677888888888777789999999999984
No 40
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=60.89 E-value=8 Score=33.24 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=30.5
Q ss_pred CCccCCchHHHHHHhhhhcCC-cceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCe
Q 013066 143 GGTGSGLGSLLLERLSVDYGK-KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV 200 (450)
Q Consensus 143 GGtGSG~gs~l~e~l~deyp~-~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~ 200 (450)
+|-|.|+|..+++.||.++|+ ..+++... |++-+-.-|..-+|.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANE 50 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCC
Confidence 355778999999999999998 55665543 555555555555543
No 41
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=50.33 E-value=48 Score=33.48 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=56.0
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013066 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (450)
...+.+.++.+.|+..+ +..+||+|+|+.+ | ---++.+++.+-...++-.+++=+-.|....+.........++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677778888888765 4588999999876 5 2457777776555545555666677887653333333333344
Q ss_pred HHHHhhccCCeeeeeCchhHHh
Q 013066 190 STHSLLEHTDVSVLLDNEAIYD 211 (450)
Q Consensus 190 sl~~l~e~~d~~i~~~N~~l~~ 211 (450)
.+..-.... .|.++=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 333222223 444444555543
No 42
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=50.00 E-value=16 Score=31.36 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcCC-CcceeEEeeCCCCccCCchH-HHHHHhh
Q 013066 116 DLCLDRIRKLADNCTG-LQGFLVFHAVGGGTGSGLGS-LLLERLS 158 (450)
Q Consensus 116 ~~~~d~ir~~~E~cD~-lqgf~~~~sl~GGtGSG~gs-~l~e~l~ 158 (450)
+...++|++.+|+++. =+|++++.++ ||+ =+.. ..++.+.
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 3466788888999866 7899999999 665 2322 3455554
No 43
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=47.26 E-value=32 Score=29.95 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=39.3
Q ss_pred cccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEec
Q 013066 106 GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 (450)
Q Consensus 106 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P 173 (450)
|++.....+...+...+++...++..-+-+++=||+||+. +..+...++...+.+.+..++.-|
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEEEeCC
Confidence 5555556667777777777776667777778889997654 444555555543334444444433
No 44
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=43.09 E-value=85 Score=31.29 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=50.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CcchhhhHHH
Q 013066 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 188 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 188 (450)
...+.+.++.+.|++.+++ .+||+|+|... |= -.++..+..+-+..++-.+++=+..|....+ |...-.++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3567777888888888754 88999999775 42 3455566665555555566777788876533 4444444444
Q ss_pred HHHHHhhccCCeeeeeCchhHH
Q 013066 189 LSTHSLLEHTDVSVLLDNEAIY 210 (450)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~~l~ 210 (450)
....+- +..-..++|+ +.++
T Consensus 128 ~~A~~~-~~~GV~v~f~-~~i~ 147 (313)
T PF00710_consen 128 RVAASP-AGPGVLVVFN-GRIY 147 (313)
T ss_dssp HHHHSG-GTSSEEEEET-TEEE
T ss_pred HHHhcc-cCCceEEEeC-CCcc
Confidence 433333 2444455554 4454
No 45
>PRK13660 hypothetical protein; Provisional
Probab=42.52 E-value=1e+02 Score=28.34 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHH
Q 013066 114 IVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 193 (450)
+...+...|+..+|+ .+.=|++ +.+=|+- =.++.++-.|+.+||...+ .+++|+...++.-.+ ..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wfi~--ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e--~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWVII--SGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE--ANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEE--CCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH--HHHHHHHH
Confidence 344555666666663 3432322 2222221 2366778889999986544 456787643221111 11223345
Q ss_pred hhccCCeeeeeCchhHHhhhhccCCCCCCCccchhHHHHHHhhhccccc
Q 013066 194 LLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (450)
Q Consensus 194 l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (450)
+...||-++.+....-. .+.-|..-|+.+..+=+.+.+-+
T Consensus 98 i~~~aD~v~~vs~~~y~---------~p~q~~~rn~fmv~~sd~~i~~Y 137 (182)
T PRK13660 98 ILKQADFVKSISKRPYE---------SPAQFRQYNQFMLEHTDGALLVY 137 (182)
T ss_pred HHHhCCEEEEecCCCCC---------ChHHHHHHHHHHHHccCeEEEEE
Confidence 56688888887432110 01125677777777666555443
No 46
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=39.14 E-value=97 Score=31.06 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=56.1
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013066 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (450)
...+.+..+.+.|++.+++ .+||+|+|+.. |= -.++..+..+-+. ++-.+++=+-.|....+....+....++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777888888877763 78999999776 42 3566666655454 5555666677887654433344444444
Q ss_pred HHHHhhc--cCCeeeeeCchhHHh
Q 013066 190 STHSLLE--HTDVSVLLDNEAIYD 211 (450)
Q Consensus 190 sl~~l~e--~~d~~i~~~N~~l~~ 211 (450)
....-.+ ..-..++|++. ++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~-i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDR-IFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEECCE-Eec
Confidence 4433222 33455666444 443
No 47
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=36.68 E-value=1.3e+02 Score=23.17 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhc--CCCcceeEEeeCC----CCccCCchHHHHHHhhhhcCCcceeEEEEec
Q 013066 116 DLCLDRIRKLADNC--TGLQGFLVFHAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173 (450)
Q Consensus 116 ~~~~d~ir~~~E~c--D~lqgf~~~~sl~----GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P 173 (450)
++....++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 34555566666555 3567889999998 554 7777888887666566666554433
No 48
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=35.37 E-value=39 Score=31.97 Aligned_cols=27 Identities=30% Similarity=0.590 Sum_probs=22.0
Q ss_pred EEeeCCCCccCCchHHHHHHhhhhcCCc
Q 013066 137 VFHAVGGGTGSGLGSLLLERLSVDYGKK 164 (450)
Q Consensus 137 ~~~sl~GGtGSG~gs~l~e~l~deyp~~ 164 (450)
++-+++||+|||= +-+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5778999999998 45778888888755
No 49
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=34.05 E-value=43 Score=31.33 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=40.4
Q ss_pred cccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEE
Q 013066 104 ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 169 (450)
Q Consensus 104 a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~ 169 (450)
..|++..-..+.+.+...++...+++...+=++.=|||||+ +++.+.-.|+..++...+.++
T Consensus 100 h~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i~~~ 161 (229)
T cd00519 100 HSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDVTVY 161 (229)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCceEEE
Confidence 45555555566777788888888887777778888999765 445555556655444333333
No 50
>PF03283 PAE: Pectinacetylesterase
Probab=33.82 E-value=96 Score=31.69 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHHHHH-hhhcCCCcceeEEeeCCCCccCCchHHH-HHHhhhhcCC
Q 013066 107 HYTIGKEIVDLCLDRIRKL-ADNCTGLQGFLVFHAVGGGTGSGLGSLL-LERLSVDYGK 163 (450)
Q Consensus 107 ~~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~~~~sl~GGtGSG~gs~l-~e~l~deyp~ 163 (450)
.|..|...++.+++.|... +.+ .+-+++..+.+||.| +.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~---a~~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPN---AKQVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcc---cceEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 4556888888888877766 443 444577777766655 444 7889999995
No 51
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=31.50 E-value=26 Score=28.47 Aligned_cols=54 Identities=28% Similarity=0.459 Sum_probs=39.9
Q ss_pred EeecChhhHHHHHHH-------HHHHHHHhccccceeccccCCccc--ccHHHHHHHHHHHHHHHHHH
Q 013066 377 MISNSTSVAEVFSRI-------DQKFDLMYSKRAFVHWYVGEGMEE--GEFSEAREDLAALEKDYEEV 435 (450)
Q Consensus 377 ~l~N~t~i~~~l~~i-------~~~~~~m~~rkAflH~Y~~~Gmee--~eF~ea~~~l~~li~~Y~~~ 435 (450)
.|+|.++|...|..+ +++-..+-.+|+|. ||+.+ ....||+..|+.|-.+++.=
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888765 55666666777655 67743 68999999999999999853
No 52
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=31.16 E-value=59 Score=32.65 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhhhcCCCcceeEEeeCCCCcc
Q 013066 114 IVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTG 146 (450)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 146 (450)
-.+++.++++..+++.+.-+|++++.++-|||=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 346677788888888877789999999999984
No 53
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=28.54 E-value=1.1e+02 Score=32.66 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=25.1
Q ss_pred cceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCC
Q 013066 133 QGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (450)
Q Consensus 133 qgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~ 175 (450)
.++-+.-++|+|+|| ||++|++ +-+++.++.|..
T Consensus 116 g~iR~~LDvGcG~aS-F~a~l~~--------r~V~t~s~a~~d 149 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS-FGAYLLE--------RNVTTMSFAPND 149 (506)
T ss_pred CceEEEEeccceeeh-hHHHHhh--------CCceEEEccccc
Confidence 467899999999986 9998874 345666666653
No 54
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=27.98 E-value=57 Score=27.53 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCC--cceeEEEE
Q 013066 113 EIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK--KSKLGFTV 171 (450)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~--~~i~~~~v 171 (450)
...+.+.+.|+..+++.....=++.=|||||+ ++..+.-.+....+. ..+.+++.
T Consensus 45 ~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~~~~~~~~~~f 101 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPSSSSNVKCYTF 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTTSTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccccccceeeeec
Confidence 56677888888887776655555667898654 556666666665544 33444443
No 55
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=27.77 E-value=1.8e+02 Score=29.06 Aligned_cols=95 Identities=19% Similarity=0.138 Sum_probs=52.6
Q ss_pred chhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CcchhhhHHHH
Q 013066 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVL 189 (450)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~l 189 (450)
..+.+..+.+.|+..+.. +..+||+|+|... |= -.++..+..+-+..+|-.+++=+-.|....+ |...--++++
T Consensus 58 t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av- 132 (323)
T smart00870 58 TPADWLKLAKRINEALAD-DGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV- 132 (323)
T ss_pred CHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH-
Confidence 456666667777665442 5689999999776 42 3566666655554455556666677876533 3333333333
Q ss_pred HHHHhhc--cCCeeeeeCchhHHh
Q 013066 190 STHSLLE--HTDVSVLLDNEAIYD 211 (450)
Q Consensus 190 sl~~l~e--~~d~~i~~~N~~l~~ 211 (450)
....-.+ ..-..++| |+.++.
T Consensus 133 ~~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 133 RVAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred HHHcCcccCCCEEEEEE-CCEeee
Confidence 3332222 22334444 555553
No 56
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=27.56 E-value=1.3e+02 Score=30.29 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013066 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 189 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 189 (450)
...+.+..+.+.|+...++ .+||+|+|+.+ |= -.++..+..+-+. +|-.+++=+-.|....+.........++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777888888877763 78999999876 52 4566667665444 5555666677887653333333333444
Q ss_pred HHHHhhcc-----CCeeeeeCchhHHhh
Q 013066 190 STHSLLEH-----TDVSVLLDNEAIYDI 212 (450)
Q Consensus 190 sl~~l~e~-----~d~~i~~~N~~l~~~ 212 (450)
....-.+. -..++++=|+.++.-
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~a 159 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHRG 159 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEeec
Confidence 34332221 224555556666543
No 57
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=27.26 E-value=1.1e+02 Score=28.17 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=32.4
Q ss_pred cccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHH
Q 013066 98 DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLL 153 (450)
Q Consensus 98 g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l 153 (450)
+.|.||+-+. +++.+.+...+... .+-+-...-.+..++.-..|||+=+-|
T Consensus 84 SggSNl~psN----p~L~~rv~~~~~~l-r~~~~~~~~~vP~dlvt~SgSGLDP~I 134 (190)
T COG2156 84 SGGSNLGPSN----PELLERVKARVAAL-RAENPVNDSEVPVDLVTASGSGLDPHI 134 (190)
T ss_pred cCCcCCCCCC----HHHHHHHHHHHHHH-HhcCCCCCCCCCHHHHhccccCCCCCC
Confidence 4566777654 45666666664333 333455566888889888899975544
No 58
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=27.17 E-value=1e+02 Score=30.12 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCCcccccccchhhHHHHH-HHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEE
Q 013066 101 NNFARGHYTIGKEIVDLCL-DRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (450)
Q Consensus 101 nn~a~G~~~~g~~~~~~~~-d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v 171 (450)
-.++.|||..+.+-.++.. .++...+|+++-=.| .=+-++|.|+| |+. ..+...| .+.+..+.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~----~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLA----IYAAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHH----HHHHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHH----HHHHHHc-CcEEEEEEC
Confidence 4567777777766454444 467778888763334 56678888887 443 4455666 454444444
No 59
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=27.01 E-value=2e+02 Score=29.83 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCCC-CcchhhhHHH
Q 013066 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 188 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 188 (450)
...+.|..+.+.|+..++ +..+||+|+|+.. |= -.++..+..+-+..|+=.+++=+-.|....+ +...-.++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 345777788888888776 3468999999776 52 4566666655444455556666677875433 4444444444
Q ss_pred HHHHHhhccCCeeeeeCch
Q 013066 189 LSTHSLLEHTDVSVLLDNE 207 (450)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~ 207 (450)
.. ..- ..+-..++|+++
T Consensus 195 ~~-A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RA-ATS-PIAEVTVVMHGE 211 (404)
T ss_pred HH-HhC-CCCcEEEEECCc
Confidence 33 221 344556666654
No 60
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=26.74 E-value=53 Score=33.15 Aligned_cols=42 Identities=33% Similarity=0.568 Sum_probs=29.1
Q ss_pred HHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEE
Q 013066 124 KLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT 170 (450)
Q Consensus 124 ~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~ 170 (450)
+.++.+..+.|+-+..+.|||+|. ++.+|--.||+...+++-
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~-----v~k~ll~~fp~ik~infd 208 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGR-----VLKNLLSKYPHIKGINFD 208 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhH-----HHHHHHHhCCCCceeecC
Confidence 346677778889999999988763 333333389987665553
No 61
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=25.63 E-value=30 Score=16.60 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=5.9
Q ss_pred ccCCCCCc
Q 013066 257 TNLVPYPR 264 (450)
Q Consensus 257 ~~L~p~p~ 264 (450)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 62
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=24.72 E-value=51 Score=26.71 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=21.5
Q ss_pred cceeEEeeCCCCccCCchHHHHHHhhh
Q 013066 133 QGFLVFHAVGGGTGSGLGSLLLERLSV 159 (450)
Q Consensus 133 qgf~~~~sl~GGtGSG~gs~l~e~l~d 159 (450)
.+|-|+.+.+.|+|+.+-+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477999999999998888888887754
No 63
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=24.44 E-value=40 Score=32.75 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHH
Q 013066 117 LCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLER 156 (450)
Q Consensus 117 ~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~ 156 (450)
++++++|+.+.+-..+ +|+|.|+|++++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788899988875544 5678899999988754
No 64
>PTZ00489 glutamate 5-kinase; Provisional
Probab=23.22 E-value=3.4e+02 Score=26.39 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=28.1
Q ss_pred hhhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeeeCc
Q 013066 157 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDN 206 (450)
Q Consensus 157 l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N 206 (450)
..+.+.+..+.+.-+++....-....+..|+.-++..|.+. .++|+=|
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIin 134 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIIN 134 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEEC
Confidence 44455555556666665543223344455888888888876 4566643
No 65
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.44 E-value=57 Score=19.88 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=9.5
Q ss_pred CCCccCCchHHHH
Q 013066 142 GGGTGSGLGSLLL 154 (450)
Q Consensus 142 ~GGtGSG~gs~l~ 154 (450)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888876654
No 66
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=21.45 E-value=1.8e+02 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=23.8
Q ss_pred hhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcce
Q 013066 127 DNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSK 166 (450)
Q Consensus 127 E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i 166 (450)
.+.-.+.++--+.++|||+|. ++..+...||+...
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~~ 127 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGH-----FAIALARAYPNLRA 127 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSH-----HHHHHHHHSTTSEE
T ss_pred hccccccCccEEEeccCcchH-----HHHHHHHHCCCCcc
Confidence 344457788889999999874 33455677888753
No 67
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=21.23 E-value=3e+02 Score=28.79 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCCC-CCcchhhhHHH
Q 013066 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (450)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~-~~~~~~~yN~~ 188 (450)
...+.|..+.+.|++.++. ..+||+|+|+.. |= -.++..+..+- ..|+=.+++=+-.|.... ++...-.++++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4567788888888888764 589999999876 53 45666666544 445555566667787543 34434344444
Q ss_pred HHHHHhhccCCeeeeeCch
Q 013066 189 LSTHSLLEHTDVSVLLDNE 207 (450)
Q Consensus 189 lsl~~l~e~~d~~i~~~N~ 207 (450)
. +.. ...+-..++|+.+
T Consensus 207 ~-~A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 L-AAT-SDIAEVVVVMHGT 223 (419)
T ss_pred H-HHh-CCCCcEEEEECCc
Confidence 3 332 3345566666654
No 68
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=20.37 E-value=2.3e+02 Score=28.88 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=57.9
Q ss_pred chhhHHHHHHHHHHHhhhcCCCcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeEEEEecCCC-CCCcchhhhHHHH
Q 013066 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVL 189 (450)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~l 189 (450)
-.+.+..+.+.|.+.+++. ..+||+|+|... | --.++..+..+-+. |+=.+++=+-.|+.. .++....-+|++.
T Consensus 81 ~~~~w~~la~~I~~~~~~~-~~dGvVItHGTD--T-meeTA~~L~l~l~~-~kPVVlTGamr~s~~~~sDg~~NL~~Av~ 155 (351)
T COG0252 81 TPEDWLRLAEAINEALDDG-DVDGVVITHGTD--T-MEETAFFLSLTLNT-PKPVVLTGAMRPADAPSSDGPANLRNAVS 155 (351)
T ss_pred CHHHHHHHHHHHHHHhccC-CCCeEEEeCCCc--h-HHHHHHHHHHHhcC-CCCEEEeCCCCCCCCcCCCcHHHHHHHHH
Confidence 3566677777777776653 368999999776 4 24567777776555 444455556677765 3466666667765
Q ss_pred HHHHhhccCCeeeeeCchhHHh
Q 013066 190 STHSLLEHTDVSVLLDNEAIYD 211 (450)
Q Consensus 190 sl~~l~e~~d~~i~~~N~~l~~ 211 (450)
.-..-.-.--.+++.-|+.++.
T Consensus 156 vA~~~~~~~~gV~v~~~~~i~~ 177 (351)
T COG0252 156 VAADPKSRGVGVLVVFNDRIHR 177 (351)
T ss_pred HhcCcccCCcEEEEecCceeee
Confidence 5443111122444555766654
No 69
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=20.29 E-value=1.1e+02 Score=32.37 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=42.6
Q ss_pred cccCCCcccccccchhhHHHHHHHHHHHhhhcCCCcc----eeEEeeCCCCccCCchHHHHHHhhhh
Q 013066 98 DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQG----FLVFHAVGGGTGSGLGSLLLERLSVD 160 (450)
Q Consensus 98 g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqg----f~~~~sl~GGtGSG~gs~l~e~l~de 160 (450)
|++-.|-.+| +..+..|+...++++.+|..-.+.| ++|-||||| =+.-+.++...++
T Consensus 146 ga~YDwRls~--~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~----l~~lyFl~w~~~~ 206 (473)
T KOG2369|consen 146 GAPYDWRLSY--HNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGG----LYVLYFLKWVEAE 206 (473)
T ss_pred ccccchhhcc--CChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCcc----HHHHHHHhccccc
Confidence 5667777776 3467889999999999999988888 688899953 3455555555553
No 70
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=20.16 E-value=1.1e+02 Score=23.02 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=23.0
Q ss_pred CcceeEEeeCCCCccCCchHHHHHHhhhhcCCcceeE
Q 013066 132 LQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168 (450)
Q Consensus 132 lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~ 168 (450)
+..+.+.-+. -|-|+|+.|+..+.+.++.+.+..
T Consensus 29 i~~~~v~~~~---rg~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 29 IGYLAVDPEY---RGKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp EEEEEE-GGG---TTSSHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECHHH---cCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3344444444 356899999999999998776643
Done!