BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013067
         (450 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
           Mycobacterium Tuberculosis H37rv
          Length = 549

 Score = 32.0 bits (71), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 150 GIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDM-- 207
           G+H +  E +A+ +TALR  R+   V DG      V A+ + + A +  +R   W     
Sbjct: 81  GVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAVLDAMGAFTDRLRSGEWTGATG 140

Query: 208 KKINEI 213
           K+I+ +
Sbjct: 141 KRISTV 146


>pdb|3EXW|A Chain A, Crystal Structure Of The Human Adenovirus Type 7 Fiber
           Knob
 pdb|3EXW|B Chain B, Crystal Structure Of The Human Adenovirus Type 7 Fiber
           Knob
 pdb|3EXW|C Chain C, Crystal Structure Of The Human Adenovirus Type 7 Fiber
           Knob
          Length = 213

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 250 YLIG-----NLQPAHMDFRFF------TLGNLWSIVSSLGTPKQNESILNLIEAKWDDLV 298
           Y+IG     N+   H +  F       + GNL + +SSL TP  ++S  N+      +  
Sbjct: 62  YVIGVSNDFNMLTTHKNINFTAELFFDSTGNLLTSLSSLKTPLNHKSGQNMATGALTNAK 121

Query: 299 GHMPLKICYP 308
           G MP    YP
Sbjct: 122 GFMPSTTAYP 131


>pdb|2O39|A Chain A, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
           And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
 pdb|2O39|B Chain B, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
           And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
          Length = 197

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 250 YLIG-----NLQPAHMDFRFF------TLGNLWSIVSSLGTPKQNESILNLIEAKWDDLV 298
           Y+IG     N+   H +  F       + GNL + +SSL TP  ++S  N+      +  
Sbjct: 46  YVIGVSNNFNMLTTHRNINFTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAK 105

Query: 299 GHMPLKICYP 308
           G MP    YP
Sbjct: 106 GFMPSTTAYP 115


>pdb|3EXV|A Chain A, Crystal Structure Of The Human Adenovirus Type 11 Fiber
           Knob
 pdb|3O8E|A Chain A, Structure Of Extracelllar Portion Of Cd46 In Complex With
           Adenovirus Type 11 Knob
 pdb|3O8E|C Chain C, Structure Of Extracelllar Portion Of Cd46 In Complex With
           Adenovirus Type 11 Knob
          Length = 213

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 250 YLIG-----NLQPAHMDFRFF------TLGNLWSIVSSLGTPKQNESILNLIEAKWDDLV 298
           Y+IG     N+   H +  F       + GNL + +SSL TP  ++S  N+      +  
Sbjct: 62  YVIGVSNNFNMLTTHRNINFTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAK 121

Query: 299 GHMPLKICYP 308
           G MP    YP
Sbjct: 122 GFMPSTTAYP 131


>pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual
           Functional Aminotransferase Involved In Butirosin
           Biosynthesis.
 pdb|2C81|A Chain A, Crystal Structures Of The Plp- And Pmp-Bound Forms Of
           Btrr, A Dual Functional Aminotransferase Involved In
           Butirosin Biosynthesis
          Length = 418

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 367 LPLDHWPEY--YDTRTGRFTGKQSRLFQT--WTIAGFLTSKMLVE 407
           +P DHWPE+  +  RT R   K   +FQ+  W I+G+ T +  +E
Sbjct: 3   IPFDHWPEWPQHSDRTRR---KIEEVFQSNRWAISGYWTGEESME 44


>pdb|1U83|A Chain A, Psl Synthase From Bacillus Subtilis
          Length = 276

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 17/89 (19%)

Query: 139 TDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLT-VSDGSGSNNLVRAINNRLSALSF 197
           T  S +ID     +G+PL+    F  A+  + + +  V  G G++ L + +  ++S L  
Sbjct: 40  TGQSILID-----NGYPLQ---FFKDAIAGASDYIDFVKFGWGTSLLTKDLEEKISTLKE 91

Query: 198 HIREYY--------WVDMKKINEIYRYKT 218
           H   ++        +V  KK+NE +RY T
Sbjct: 92  HDITFFFGGTLFEKYVSQKKVNEFHRYCT 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,574,950
Number of Sequences: 62578
Number of extensions: 634384
Number of successful extensions: 1148
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 9
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)