BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013068
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
Length = 165
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
RH IS+ +E+G ++R+AG+F+ RGYNIESL+V D L T+V +G + ++ Q+
Sbjct: 4 RHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQIT 63
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
+QLNKL+ V+K+ D+S+E +VEREL L+K+ E L DIFR ++D++ T
Sbjct: 64 KQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYT 123
Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
IE+TG K+ + + I E+ARTG L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%)
Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
G H +S+L N G L+ V G+ S RGYNI+SL+V P E LS T V G DE +
Sbjct: 1 GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVE 60
Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
++ + L+KLI++ ++ D++ + EREL L+K+ R + +A IFR +DV++
Sbjct: 61 QITKQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNE 120
Query: 431 TITLEV 436
T+E+
Sbjct: 121 LYTIEL 126
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
Query: 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
R +SV + +ESG ++R+ G+F++RGYNIESL V D L TI G E+VL Q+
Sbjct: 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
+QL+KLV+V++V ++ HVERE+ML+K+ E+ +IFR +++D++ T
Sbjct: 63 KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
+++ G GK+ +A R+++K I E+AR+G + L R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 72/120 (60%)
Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
LS+L+ N G L+ V G+ S+RGYNI+SL V P + LS +T G ++ + ++ + L
Sbjct: 6 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
HKL+D+ V ++ ERE++L+KI + R +V +IFR + +DV+ T+++
Sbjct: 66 HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 125
>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit
From Thermotoga Maritima
Length = 193
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLR 133
+++ H +S V ++ G+ ++A +FARRG+NI S+ VG + L I V G ++ +
Sbjct: 26 QIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIE 85
Query: 134 QVVEQLNKLVNVIKVEDISNEPH--VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS 191
Q+ +Q KLV V+KV I P VERE LIK+ D EI LV+IFR K++D+S
Sbjct: 86 QIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDEDKQ-EIFQLVEIFRGKIIDVS 144
Query: 192 EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
IE+TG K+ A L + ++E+ARTG +A R
Sbjct: 145 REGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
+R H +S LV+N PGV V + +RRG+NI S+ VG +E GLS + V G D++I +
Sbjct: 27 IREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQ 86
Query: 372 LVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
+ + +KL+++ +V I LP ERE LIK+ + ++++ + +IFR + +DVS
Sbjct: 87 IEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFD-EDKQEIFQLVEIFRGKIIDVSR 145
Query: 430 HTITLEV 436
+E+
Sbjct: 146 EGAIIEI 152
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 253 EKKRTGIFIPETNQ--SLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPS 310
EKK +F+PE LN N +D + D +E Y + + + G L+ +DPS
Sbjct: 44 EKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPS 103
Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSL-------AVGPAEKEGLSCITTVVP 363
+ L+ ++ GV +R YN L V E E T ++P
Sbjct: 104 DAAHPWNTHLIIDSDGV--------TRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIP 155
Query: 364 GTDESIGKL 372
D IG+L
Sbjct: 156 PVDTPIGRL 164
>pdb|2F06|A Chain A, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
pdb|2F06|B Chain B, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
Length = 144
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141
+S+F+ ++SG + + V A+ N+ +L + N D + +VS ++ + + + +
Sbjct: 9 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN-HF 67
Query: 142 LVNVIKVEDIS 152
VN+ V IS
Sbjct: 68 AVNITDVVGIS 78
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 68 SVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESL-AVGLNVDKALFTIVVS 126
+P K KRH GD I+N++A + RGY +++ + + + S
Sbjct: 366 ELPKYYQIKTKRHV----EGDRHAIVNKVAEMARERGYTVDTTDGAKIIFEDGWVLVRAS 421
Query: 127 GTERVLRQVVEQLNK 141
GTE ++R E +K
Sbjct: 422 GTEPIIRIFSEAKSK 436
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 284 PVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRR-GYNI 342
PV + ++QV + H G L ED S L + + + I G+ +R G N+
Sbjct: 797 PVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNV 856
Query: 343 QSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388
LA P E + + + + G + K ++ KL +H QD+
Sbjct: 857 AKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDL 903
>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
Length = 268
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 67 QSVPPITASKVKRHTISVFVGDESGI----INRIAGVFARRGYNIESLAVGLNVDKALFT 122
S+ + SKVK S F G GI I I G+ G + + +GL+ AL
Sbjct: 18 NSINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMTKIVMGLSFAIALSL 77
Query: 123 IVVSGTE 129
++++GTE
Sbjct: 78 VIMTGTE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,360,958
Number of Sequences: 62578
Number of extensions: 487594
Number of successful extensions: 1351
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 23
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)