Query 013068
Match_columns 450
No_of_seqs 322 out of 2228
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 00:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11895 ilvH acetolactate syn 100.0 1.2E-50 2.6E-55 372.2 21.0 157 78-234 1-159 (161)
2 TIGR00119 acolac_sm acetolacta 100.0 3.6E-50 7.8E-55 367.7 20.2 155 79-233 1-157 (157)
3 CHL00100 ilvH acetohydroxyacid 100.0 2.8E-50 6.1E-55 373.8 17.7 164 78-241 1-166 (174)
4 COG0440 IlvH Acetolactate synt 100.0 1.4E-49 3.1E-54 364.7 16.8 160 76-235 1-162 (163)
5 KOG2663 Acetolactate synthase, 100.0 2.6E-51 5.5E-56 396.6 2.5 236 74-364 72-309 (309)
6 PRK11895 ilvH acetolactate syn 100.0 4.8E-43 1E-47 322.0 16.8 137 313-449 1-138 (161)
7 COG0440 IlvH Acetolactate synt 100.0 2.1E-43 4.5E-48 324.1 13.3 136 312-447 2-137 (163)
8 TIGR00119 acolac_sm acetolacta 100.0 1.4E-42 2.9E-47 317.8 16.2 136 314-449 1-137 (157)
9 CHL00100 ilvH acetohydroxyacid 100.0 3.9E-42 8.5E-47 319.4 14.5 137 313-449 1-138 (174)
10 PRK08178 acetolactate synthase 100.0 1.5E-32 3.3E-37 233.6 11.5 90 309-399 3-92 (96)
11 PRK13562 acetolactate synthase 100.0 5E-32 1.1E-36 225.5 10.3 79 313-391 1-82 (84)
12 KOG2663 Acetolactate synthase, 100.0 1.8E-32 3.8E-37 266.0 4.0 120 311-441 74-193 (309)
13 PRK06737 acetolactate synthase 100.0 1.6E-30 3.4E-35 213.0 10.6 76 313-388 1-76 (76)
14 PRK11152 ilvM acetolactate syn 100.0 1.2E-28 2.6E-33 201.9 10.6 75 312-387 1-75 (76)
15 PRK08178 acetolactate synthase 100.0 3.4E-28 7.4E-33 207.0 10.1 86 76-162 5-92 (96)
16 PRK13562 acetolactate synthase 99.9 6E-28 1.3E-32 201.1 9.7 78 78-155 1-83 (84)
17 PRK06737 acetolactate synthase 99.9 1.1E-26 2.4E-31 190.4 10.0 74 78-151 1-76 (76)
18 PRK11152 ilvM acetolactate syn 99.9 3.9E-25 8.4E-30 181.2 9.8 73 77-150 1-75 (76)
19 PF10369 ALS_ss_C: Small subun 99.9 2.6E-25 5.6E-30 181.0 7.7 75 158-232 1-75 (75)
20 PF13710 ACT_5: ACT domain; PD 99.9 4.4E-23 9.6E-28 162.5 8.6 63 323-385 1-63 (63)
21 PF13710 ACT_5: ACT domain; PD 99.8 5.1E-20 1.1E-24 145.2 8.0 61 88-148 1-63 (63)
22 PF10369 ALS_ss_C: Small subun 99.5 3.5E-14 7.6E-19 115.8 4.6 55 395-449 1-56 (75)
23 COG3978 Acetolactate synthase 99.0 7.1E-10 1.5E-14 92.3 7.8 77 312-389 1-77 (86)
24 COG3978 Acetolactate synthase 99.0 6.1E-10 1.3E-14 92.7 7.4 75 77-152 1-77 (86)
25 PF01842 ACT: ACT domain; Int 98.9 1.2E-08 2.6E-13 77.4 8.1 66 315-381 1-66 (66)
26 cd04878 ACT_AHAS N-terminal AC 98.8 3E-08 6.6E-13 75.2 9.6 71 315-385 1-71 (72)
27 COG4747 ACT domain-containing 98.8 1.8E-08 4E-13 89.9 8.0 123 77-220 1-133 (142)
28 PF01842 ACT: ACT domain; Int 98.7 4.8E-08 1E-12 74.0 8.0 64 80-143 1-65 (66)
29 PF13291 ACT_4: ACT domain; PD 98.7 2.2E-07 4.7E-12 74.7 11.0 74 313-386 5-79 (80)
30 cd04879 ACT_3PGDH-like ACT_3PG 98.6 1.4E-07 3E-12 71.2 8.0 71 316-388 1-71 (71)
31 PRK06349 homoserine dehydrogen 98.6 9.4E-08 2E-12 99.9 8.7 73 312-385 346-419 (426)
32 cd04908 ACT_Bt0572_1 N-termina 98.6 2E-07 4.3E-12 72.8 7.7 48 80-127 2-49 (66)
33 cd04878 ACT_AHAS N-terminal AC 98.6 5.2E-07 1.1E-11 68.4 9.3 69 80-148 1-71 (72)
34 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.5 3.3E-07 7.1E-12 70.7 7.6 71 315-385 1-72 (79)
35 cd04903 ACT_LSD C-terminal ACT 98.5 4.7E-07 1E-11 68.6 7.9 71 316-388 1-71 (71)
36 cd04908 ACT_Bt0572_1 N-termina 98.5 9.7E-07 2.1E-11 68.9 8.3 45 315-359 2-46 (66)
37 cd04879 ACT_3PGDH-like ACT_3PG 98.4 1.2E-06 2.6E-11 66.0 7.1 68 82-151 2-71 (71)
38 PRK08577 hypothetical protein; 98.4 3.5E-06 7.5E-11 75.2 11.0 76 313-388 55-132 (136)
39 cd04874 ACT_Af1403 N-terminal 98.3 4.6E-06 9.9E-11 63.5 9.3 70 316-387 2-71 (72)
40 PF13291 ACT_4: ACT domain; PD 98.3 6E-06 1.3E-10 66.4 10.2 70 79-149 6-79 (80)
41 cd04888 ACT_PheB-BS C-terminal 98.3 5.9E-06 1.3E-10 64.8 9.8 72 316-388 2-75 (76)
42 PRK06349 homoserine dehydrogen 98.3 2.3E-06 4.9E-11 89.6 8.6 75 74-148 343-419 (426)
43 cd04901 ACT_3PGDH C-terminal A 98.3 2.1E-06 4.6E-11 66.1 5.9 68 317-388 2-69 (69)
44 cd04903 ACT_LSD C-terminal ACT 98.2 4E-06 8.6E-11 63.5 7.2 69 81-151 1-71 (71)
45 cd04901 ACT_3PGDH C-terminal A 98.2 1.6E-06 3.6E-11 66.8 4.9 68 82-151 2-69 (69)
46 cd04902 ACT_3PGDH-xct C-termin 98.2 4E-06 8.6E-11 65.0 7.1 71 317-389 2-72 (73)
47 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.2 5.3E-06 1.1E-10 64.0 7.7 70 80-149 1-73 (79)
48 PRK11589 gcvR glycine cleavage 98.2 4.3E-05 9.3E-10 72.8 15.3 64 76-139 5-68 (190)
49 cd04877 ACT_TyrR N-terminal AC 98.2 1.8E-05 3.8E-10 63.2 9.5 70 316-389 2-71 (74)
50 cd04887 ACT_MalLac-Enz ACT_Mal 98.2 2.3E-05 5.1E-10 61.4 9.9 69 316-385 1-70 (74)
51 PRK08577 hypothetical protein; 98.1 1.8E-05 3.9E-10 70.6 10.3 76 76-151 53-132 (136)
52 cd04889 ACT_PDH-BS-like C-term 98.1 6.5E-06 1.4E-10 61.9 6.2 50 82-131 1-51 (56)
53 cd04888 ACT_PheB-BS C-terminal 98.1 1.6E-05 3.4E-10 62.4 8.6 71 81-151 2-75 (76)
54 cd04876 ACT_RelA-SpoT ACT dom 98.1 2.9E-05 6.4E-10 56.5 9.3 69 317-386 1-70 (71)
55 cd04874 ACT_Af1403 N-terminal 98.1 2.2E-05 4.8E-10 59.7 8.8 69 81-150 2-71 (72)
56 PRK00194 hypothetical protein; 98.1 5.7E-06 1.2E-10 68.0 5.2 73 312-386 1-75 (90)
57 cd04883 ACT_AcuB C-terminal AC 98.0 2.3E-05 4.9E-10 61.0 7.9 61 316-378 3-63 (72)
58 PRK00194 hypothetical protein; 98.0 8.7E-06 1.9E-10 66.9 5.2 73 77-149 1-75 (90)
59 cd04902 ACT_3PGDH-xct C-termin 98.0 1.8E-05 4E-10 61.3 6.7 69 82-152 2-72 (73)
60 cd04889 ACT_PDH-BS-like C-term 98.0 1.8E-05 3.9E-10 59.5 6.3 47 317-364 1-47 (56)
61 PRK04435 hypothetical protein; 98.0 8.6E-05 1.9E-09 67.8 11.3 76 313-389 68-145 (147)
62 PRK04435 hypothetical protein; 98.0 5.6E-05 1.2E-09 69.0 9.9 74 79-152 69-145 (147)
63 cd04869 ACT_GcvR_2 ACT domains 97.9 3.4E-05 7.4E-10 61.6 7.3 64 317-380 2-70 (81)
64 cd02116 ACT ACT domains are co 97.9 5.3E-05 1.2E-09 52.2 7.4 59 317-376 1-59 (60)
65 cd04886 ACT_ThrD-II-like C-ter 97.9 4.9E-05 1.1E-09 57.7 7.3 63 317-379 1-67 (73)
66 cd04880 ACT_AAAH-PDT-like ACT 97.9 9.3E-05 2E-09 58.9 8.9 67 317-383 2-71 (75)
67 cd04909 ACT_PDH-BS C-terminal 97.9 6.2E-05 1.4E-09 58.5 7.6 63 315-378 2-64 (69)
68 cd04877 ACT_TyrR N-terminal AC 97.9 0.0001 2.2E-09 58.8 8.7 70 81-152 2-71 (74)
69 cd04905 ACT_CM-PDT C-terminal 97.8 0.00015 3.3E-09 58.6 9.6 67 315-381 2-71 (80)
70 cd04887 ACT_MalLac-Enz ACT_Mal 97.8 0.00019 4.1E-09 56.2 9.5 68 81-149 1-71 (74)
71 cd04909 ACT_PDH-BS C-terminal 97.8 8.4E-05 1.8E-09 57.7 7.5 61 80-141 2-64 (69)
72 cd04876 ACT_RelA-SpoT ACT dom 97.8 0.00016 3.5E-09 52.6 8.5 68 82-149 1-70 (71)
73 cd04872 ACT_1ZPV ACT domain pr 97.8 2.9E-05 6.3E-10 63.9 5.0 70 314-385 1-72 (88)
74 cd04884 ACT_CBS C-terminal ACT 97.8 0.00012 2.7E-09 57.7 8.3 66 317-382 2-69 (72)
75 cd04905 ACT_CM-PDT C-terminal 97.7 0.00022 4.8E-09 57.6 9.0 65 80-144 2-71 (80)
76 cd04882 ACT_Bt0572_2 C-termina 97.7 0.00012 2.5E-09 55.5 6.6 48 317-364 2-49 (65)
77 cd04884 ACT_CBS C-terminal ACT 97.7 0.00019 4.1E-09 56.7 7.8 64 82-146 2-70 (72)
78 cd04869 ACT_GcvR_2 ACT domains 97.7 0.00014 3.1E-09 58.0 6.9 61 82-142 2-69 (81)
79 cd04880 ACT_AAAH-PDT-like ACT 97.7 0.0003 6.5E-09 55.9 8.5 63 82-144 2-69 (75)
80 cd04883 ACT_AcuB C-terminal AC 97.7 0.00019 4.1E-09 55.8 7.1 59 81-141 3-63 (72)
81 cd04872 ACT_1ZPV ACT domain pr 97.6 7.2E-05 1.6E-09 61.6 4.8 69 79-149 1-73 (88)
82 cd04875 ACT_F4HF-DF N-terminal 97.6 0.00018 3.9E-09 57.2 6.6 64 316-379 1-66 (74)
83 PRK11092 bifunctional (p)ppGpp 97.6 0.00045 9.8E-09 77.2 11.4 90 294-388 610-700 (702)
84 cd04886 ACT_ThrD-II-like C-ter 97.5 0.00034 7.4E-09 53.0 7.0 61 82-142 1-67 (73)
85 cd04882 ACT_Bt0572_2 C-termina 97.5 0.00024 5.2E-09 53.8 5.9 46 82-127 2-49 (65)
86 cd04900 ACT_UUR-like_1 ACT dom 97.5 0.0007 1.5E-08 54.0 8.6 64 315-378 2-71 (73)
87 cd04870 ACT_PSP_1 CT domains f 97.5 0.00028 6E-09 56.6 6.2 62 317-380 2-64 (75)
88 cd04873 ACT_UUR-ACR-like ACT d 97.5 0.00072 1.6E-08 51.6 8.1 49 81-129 2-50 (70)
89 cd04873 ACT_UUR-ACR-like ACT d 97.4 0.00098 2.1E-08 50.9 8.5 59 316-376 2-66 (70)
90 cd04875 ACT_F4HF-DF N-terminal 97.4 0.00047 1E-08 54.8 6.3 62 81-142 1-66 (74)
91 cd02116 ACT ACT domains are co 97.4 0.0009 1.9E-08 46.0 7.0 57 82-139 1-59 (60)
92 PRK10872 relA (p)ppGpp synthet 97.4 0.0011 2.4E-08 74.6 11.3 91 294-388 650-741 (743)
93 PF13740 ACT_6: ACT domain; PD 97.4 0.0011 2.3E-08 53.6 8.2 64 79-142 2-65 (76)
94 cd04870 ACT_PSP_1 CT domains f 97.4 0.00048 1E-08 55.2 6.1 63 82-144 2-65 (75)
95 TIGR00691 spoT_relA (p)ppGpp s 97.3 0.0012 2.6E-08 73.6 11.0 88 294-386 594-682 (683)
96 PF13740 ACT_6: ACT domain; PD 97.3 0.0017 3.7E-08 52.4 9.0 64 314-379 2-65 (76)
97 PRK05092 PII uridylyl-transfer 97.3 0.011 2.4E-07 67.9 18.7 66 315-381 844-915 (931)
98 cd04925 ACT_ACR_2 ACT domain-c 97.3 0.0012 2.7E-08 53.0 7.9 62 316-379 2-71 (74)
99 cd04899 ACT_ACR-UUR-like_2 C-t 97.3 0.0017 3.6E-08 50.2 8.3 61 81-141 2-68 (70)
100 cd04926 ACT_ACR_4 C-terminal 97.3 0.0015 3.2E-08 52.2 8.2 45 81-125 3-47 (72)
101 cd04927 ACT_ACR-like_2 Second 97.3 0.0016 3.5E-08 52.9 8.1 64 316-379 2-70 (76)
102 COG4492 PheB ACT domain-contai 97.2 0.0016 3.4E-08 59.7 8.7 77 76-152 69-148 (150)
103 COG4492 PheB ACT domain-contai 97.2 0.0019 4.1E-08 59.2 8.5 75 313-388 71-147 (150)
104 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0032 7E-08 48.6 8.8 62 316-379 2-69 (70)
105 cd04900 ACT_UUR-like_1 ACT dom 97.2 0.0023 5E-08 51.0 7.9 61 81-141 3-71 (73)
106 cd04925 ACT_ACR_2 ACT domain-c 97.1 0.0024 5.1E-08 51.4 7.7 62 81-142 2-71 (74)
107 COG4747 ACT domain-containing 97.1 0.00099 2.1E-08 60.1 6.0 60 312-374 1-60 (142)
108 cd04926 ACT_ACR_4 C-terminal 97.1 0.0031 6.8E-08 50.4 8.2 46 316-363 3-48 (72)
109 PRK07431 aspartate kinase; Pro 97.1 0.035 7.5E-07 60.6 18.5 273 85-436 277-562 (587)
110 cd04904 ACT_AAAH ACT domain of 97.0 0.0059 1.3E-07 49.2 8.9 69 316-384 2-71 (74)
111 cd04930 ACT_TH ACT domain of t 97.0 0.0057 1.2E-07 54.1 9.5 73 313-385 40-113 (115)
112 PRK13011 formyltetrahydrofolat 97.0 0.0028 6E-08 63.9 8.3 79 310-388 3-86 (286)
113 cd04893 ACT_GcvR_1 ACT domains 96.9 0.0029 6.4E-08 51.2 6.8 63 315-379 2-64 (77)
114 PRK03381 PII uridylyl-transfer 96.9 0.027 5.9E-07 63.7 16.7 49 314-363 707-755 (774)
115 cd04928 ACT_TyrKc Uncharacteri 96.9 0.0057 1.2E-07 49.7 8.3 49 315-363 2-50 (68)
116 cd04927 ACT_ACR-like_2 Second 96.9 0.0059 1.3E-07 49.6 8.1 61 81-141 2-69 (76)
117 cd04893 ACT_GcvR_1 ACT domains 96.9 0.0033 7.2E-08 50.9 6.6 63 80-142 2-64 (77)
118 COG1707 ACT domain-containing 96.9 0.0045 9.7E-08 59.0 8.2 82 314-396 2-83 (218)
119 cd04904 ACT_AAAH ACT domain of 96.9 0.0084 1.8E-07 48.3 8.7 64 81-144 2-68 (74)
120 COG0317 SpoT Guanosine polypho 96.8 0.0086 1.9E-07 67.1 10.8 89 294-387 611-700 (701)
121 TIGR01693 UTase_glnD [Protein- 96.7 0.06 1.3E-06 61.3 17.4 65 314-378 779-847 (850)
122 COG1707 ACT domain-containing 96.7 0.0063 1.4E-07 58.0 7.7 81 79-160 2-84 (218)
123 cd04928 ACT_TyrKc Uncharacteri 96.7 0.01 2.2E-07 48.3 7.9 47 80-126 2-49 (68)
124 cd04931 ACT_PAH ACT domain of 96.6 0.011 2.4E-07 50.1 8.4 66 314-379 14-81 (90)
125 PRK13011 formyltetrahydrofolat 96.6 0.0051 1.1E-07 62.0 7.3 70 75-144 3-75 (286)
126 cd04895 ACT_ACR_1 ACT domain-c 96.6 0.013 2.7E-07 48.2 8.1 62 315-377 2-69 (72)
127 PRK11790 D-3-phosphoglycerate 96.6 0.0037 8E-08 65.6 6.1 72 78-151 337-408 (409)
128 PRK00275 glnD PII uridylyl-tra 96.6 0.08 1.7E-06 61.0 17.1 65 315-380 815-885 (895)
129 PRK06027 purU formyltetrahydro 96.5 0.0059 1.3E-07 61.4 7.0 70 311-380 3-74 (286)
130 PRK03059 PII uridylyl-transfer 96.5 0.042 9.2E-07 62.9 14.5 66 315-382 787-856 (856)
131 PRK05007 PII uridylyl-transfer 96.5 0.09 1.9E-06 60.5 16.8 66 314-380 808-878 (884)
132 PRK11589 gcvR glycine cleavage 96.5 0.012 2.6E-07 56.3 8.3 116 312-431 5-130 (190)
133 cd04895 ACT_ACR_1 ACT domain-c 96.5 0.017 3.7E-07 47.4 8.0 61 80-140 2-69 (72)
134 PRK11790 D-3-phosphoglycerate 96.4 0.0082 1.8E-07 63.1 7.1 72 313-388 337-408 (409)
135 cd04930 ACT_TH ACT domain of t 96.4 0.026 5.6E-07 50.0 9.1 70 78-147 40-112 (115)
136 PRK06027 purU formyltetrahydro 96.3 0.0087 1.9E-07 60.2 6.9 69 76-144 3-75 (286)
137 cd04931 ACT_PAH ACT domain of 96.2 0.022 4.9E-07 48.3 7.8 65 77-141 12-80 (90)
138 TIGR00719 sda_beta L-serine de 96.2 0.013 2.9E-07 56.2 6.9 57 315-371 149-207 (208)
139 cd04896 ACT_ACR-like_3 ACT dom 96.2 0.023 4.9E-07 47.1 7.2 63 316-378 2-70 (75)
140 PRK13581 D-3-phosphoglycerate 96.0 0.012 2.7E-07 63.6 6.6 74 78-151 451-524 (526)
141 TIGR01127 ilvA_1Cterm threonin 96.0 0.029 6.3E-07 57.6 8.9 67 313-379 304-374 (380)
142 PRK11092 bifunctional (p)ppGpp 96.0 0.032 7E-07 62.7 9.8 71 79-151 626-700 (702)
143 cd04929 ACT_TPH ACT domain of 96.0 0.044 9.5E-07 44.8 8.0 62 317-378 3-65 (74)
144 PRK07334 threonine dehydratase 96.0 0.042 9.1E-07 57.3 9.9 68 314-381 326-397 (403)
145 cd04885 ACT_ThrD-I Tandem C-te 95.9 0.037 8.1E-07 43.5 7.0 60 317-378 1-61 (68)
146 PRK07431 aspartate kinase; Pro 95.8 0.39 8.4E-06 52.6 17.0 51 322-380 530-580 (587)
147 cd04896 ACT_ACR-like_3 ACT dom 95.8 0.037 8E-07 45.8 6.9 61 81-141 2-70 (75)
148 PRK13010 purU formyltetrahydro 95.8 0.1 2.2E-06 53.0 11.4 53 309-361 4-58 (289)
149 PRK10872 relA (p)ppGpp synthet 95.7 0.048 1E-06 61.7 9.8 72 80-151 667-741 (743)
150 COG2150 Predicted regulator of 95.7 0.031 6.7E-07 52.7 6.9 71 314-386 93-165 (167)
151 PRK13581 D-3-phosphoglycerate 95.7 0.025 5.4E-07 61.2 7.2 73 314-388 452-524 (526)
152 cd04929 ACT_TPH ACT domain of 95.7 0.06 1.3E-06 44.0 7.8 60 82-141 3-65 (74)
153 TIGR00691 spoT_relA (p)ppGpp s 95.7 0.047 1E-06 61.2 9.5 70 79-149 610-682 (683)
154 cd04897 ACT_ACR_3 ACT domain-c 95.6 0.047 1E-06 45.2 6.9 62 81-142 3-71 (75)
155 TIGR00719 sda_beta L-serine de 95.6 0.029 6.3E-07 53.9 6.5 57 78-134 147-207 (208)
156 PRK11899 prephenate dehydratas 95.6 0.069 1.5E-06 53.9 9.4 71 314-384 194-267 (279)
157 PRK04374 PII uridylyl-transfer 95.5 0.33 7.2E-06 56.0 15.6 65 315-380 797-866 (869)
158 COG2716 GcvR Glycine cleavage 95.5 0.016 3.5E-07 55.0 4.2 71 314-385 92-168 (176)
159 COG2716 GcvR Glycine cleavage 95.4 0.019 4.1E-07 54.5 4.5 72 77-149 90-169 (176)
160 PRK06635 aspartate kinase; Rev 95.4 0.14 3E-06 53.1 11.1 120 86-214 270-398 (404)
161 cd04897 ACT_ACR_3 ACT domain-c 95.4 0.076 1.7E-06 44.0 7.3 63 316-379 3-71 (75)
162 PRK06382 threonine dehydratase 95.2 0.066 1.4E-06 56.0 8.2 66 313-379 329-399 (406)
163 TIGR01327 PGDH D-3-phosphoglyc 95.2 0.031 6.8E-07 60.5 5.7 74 78-151 450-523 (525)
164 TIGR00655 PurU formyltetrahydr 95.1 0.056 1.2E-06 54.5 7.0 64 315-378 1-66 (280)
165 PRK08198 threonine dehydratase 95.1 0.11 2.4E-06 53.9 9.3 67 313-379 326-396 (404)
166 cd04935 ACT_AKiii-DAPDC_1 ACT 95.0 0.079 1.7E-06 43.1 6.3 56 321-382 11-71 (75)
167 PRK07334 threonine dehydratase 95.0 0.1 2.2E-06 54.5 8.7 64 79-142 326-395 (403)
168 TIGR01127 ilvA_1Cterm threonin 94.9 0.11 2.5E-06 53.4 8.7 65 78-142 304-374 (380)
169 PRK06545 prephenate dehydrogen 94.9 0.075 1.6E-06 54.6 7.4 66 78-144 289-356 (359)
170 TIGR00655 PurU formyltetrahydr 94.8 0.071 1.5E-06 53.7 6.8 62 80-141 1-66 (280)
171 PRK11899 prephenate dehydratas 94.8 0.13 2.8E-06 52.0 8.5 66 79-144 194-264 (279)
172 COG2061 ACT-domain-containing 94.7 0.63 1.4E-05 44.0 12.2 136 312-449 3-151 (170)
173 cd04885 ACT_ThrD-I Tandem C-te 94.7 0.16 3.4E-06 40.0 7.1 59 82-141 1-61 (68)
174 TIGR01327 PGDH D-3-phosphoglyc 94.6 0.069 1.5E-06 57.9 6.5 72 315-388 452-523 (525)
175 PRK13010 purU formyltetrahydro 94.5 0.57 1.2E-05 47.6 12.4 39 75-113 5-43 (289)
176 PRK06382 threonine dehydratase 94.5 0.14 3.1E-06 53.5 8.3 64 78-141 329-398 (406)
177 cd04935 ACT_AKiii-DAPDC_1 ACT 94.4 0.17 3.7E-06 41.2 6.9 57 86-146 11-72 (75)
178 cd04912 ACT_AKiii-LysC-EC-like 94.4 0.17 3.7E-06 40.6 6.8 52 321-378 11-67 (75)
179 COG2061 ACT-domain-containing 94.3 1.3 2.9E-05 41.8 13.3 137 76-215 2-153 (170)
180 PRK06545 prephenate dehydrogen 94.3 0.12 2.6E-06 53.1 7.2 65 314-381 290-356 (359)
181 cd04913 ACT_AKii-LysC-BS-like_ 94.3 0.11 2.3E-06 39.7 5.2 55 321-378 9-63 (75)
182 cd04906 ACT_ThrD-I_1 First of 94.3 0.22 4.9E-06 41.0 7.5 76 315-395 2-79 (85)
183 COG0317 SpoT Guanosine polypho 94.3 0.22 4.8E-06 56.2 9.7 73 77-150 625-700 (701)
184 cd04871 ACT_PSP_2 ACT domains 94.2 0.056 1.2E-06 44.9 3.7 64 317-380 2-73 (84)
185 cd04871 ACT_PSP_2 ACT domains 94.0 0.05 1.1E-06 45.2 3.1 62 82-144 2-74 (84)
186 cd04932 ACT_AKiii-LysC-EC_1 AC 93.9 0.14 3.1E-06 41.7 5.5 56 321-382 11-71 (75)
187 COG0077 PheA Prephenate dehydr 93.8 0.33 7.1E-06 49.4 9.0 75 311-385 191-268 (279)
188 COG0077 PheA Prephenate dehydr 93.8 0.27 5.8E-06 50.0 8.3 72 77-148 192-268 (279)
189 cd04891 ACT_AK-LysC-DapG-like_ 93.7 0.24 5.3E-06 36.0 6.0 42 86-127 8-50 (61)
190 TIGR00656 asp_kin_monofn aspar 93.7 0.62 1.3E-05 48.3 11.2 129 79-215 260-396 (401)
191 TIGR01270 Trp_5_monoox tryptop 93.7 0.35 7.6E-06 52.3 9.5 79 308-386 25-105 (464)
192 PRK08818 prephenate dehydrogen 93.6 0.12 2.7E-06 54.0 5.9 51 314-365 295-346 (370)
193 cd04891 ACT_AK-LysC-DapG-like_ 93.4 0.29 6.2E-06 35.6 6.0 53 321-376 8-60 (61)
194 PRK08198 threonine dehydratase 93.3 0.4 8.7E-06 49.9 9.1 66 77-142 325-396 (404)
195 PRK12483 threonine dehydratase 93.3 2.2 4.7E-05 46.9 14.9 132 78-217 344-504 (521)
196 PRK11898 prephenate dehydratas 93.2 0.48 1E-05 47.8 9.1 66 79-144 196-267 (283)
197 PRK08818 prephenate dehydrogen 93.2 0.24 5.3E-06 51.9 7.3 52 78-129 294-347 (370)
198 cd04913 ACT_AKii-LysC-BS-like_ 93.1 0.31 6.7E-06 37.0 6.0 54 86-141 9-63 (75)
199 cd04934 ACT_AK-Hom3_1 CT domai 93.1 0.25 5.4E-06 40.1 5.6 55 322-382 12-69 (73)
200 PRK10622 pheA bifunctional cho 92.9 0.5 1.1E-05 49.7 9.0 69 314-382 297-368 (386)
201 cd04932 ACT_AKiii-LysC-EC_1 AC 92.8 0.36 7.8E-06 39.3 6.2 56 86-145 11-71 (75)
202 cd04919 ACT_AK-Hom3_2 ACT doma 92.7 0.27 5.8E-06 37.5 5.1 51 322-378 12-62 (66)
203 PRK03059 PII uridylyl-transfer 92.7 0.3 6.6E-06 56.1 7.7 68 78-145 785-856 (856)
204 cd04890 ACT_AK-like_1 ACT doma 92.7 0.3 6.5E-06 37.1 5.3 49 322-376 11-61 (62)
205 cd04912 ACT_AKiii-LysC-EC-like 92.7 0.57 1.2E-05 37.6 7.1 53 85-141 10-67 (75)
206 PRK11898 prephenate dehydratas 92.5 0.72 1.6E-05 46.5 9.2 68 314-381 196-267 (283)
207 PRK10622 pheA bifunctional cho 92.4 0.49 1.1E-05 49.8 8.2 66 79-144 297-367 (386)
208 cd04906 ACT_ThrD-I_1 First of 92.4 0.68 1.5E-05 38.2 7.4 74 80-157 2-78 (85)
209 cd04936 ACT_AKii-LysC-BS-like_ 92.2 0.4 8.6E-06 35.6 5.3 51 321-379 10-60 (63)
210 PRK05092 PII uridylyl-transfer 91.9 0.54 1.2E-05 54.4 8.5 67 78-144 842-915 (931)
211 PRK15385 magnesium transport p 91.7 1.6 3.4E-05 43.3 10.3 74 313-386 141-219 (225)
212 cd04890 ACT_AK-like_1 ACT doma 91.7 0.56 1.2E-05 35.6 5.7 50 86-139 10-61 (62)
213 PRK08210 aspartate kinase I; R 91.6 3.3 7.1E-05 43.2 13.1 121 79-214 271-397 (403)
214 cd04922 ACT_AKi-HSDH-ThrA_2 AC 91.6 0.42 9.1E-06 36.1 5.0 51 322-378 12-62 (66)
215 cd04934 ACT_AK-Hom3_1 CT domai 91.5 0.64 1.4E-05 37.7 6.2 55 87-145 12-69 (73)
216 COG3830 ACT domain-containing 91.5 0.3 6.5E-06 42.1 4.4 73 312-386 1-79 (90)
217 cd04933 ACT_AK1-AT_1 ACT domai 91.3 0.55 1.2E-05 38.9 5.7 40 321-366 11-50 (78)
218 PLN02317 arogenate dehydratase 91.2 1.1 2.3E-05 47.6 9.1 71 314-384 283-370 (382)
219 TIGR01268 Phe4hydrox_tetr phen 91.1 1.1 2.4E-05 48.2 9.3 65 79-143 16-84 (436)
220 PRK03381 PII uridylyl-transfer 91.0 0.62 1.3E-05 53.1 7.7 63 315-379 600-665 (774)
221 cd04916 ACT_AKiii-YclM-BS_2 AC 91.0 0.48 1E-05 35.8 4.8 51 322-378 12-62 (66)
222 TIGR01693 UTase_glnD [Protein- 90.9 0.74 1.6E-05 52.7 8.2 67 314-380 668-740 (850)
223 cd04924 ACT_AK-Arch_2 ACT doma 90.7 0.5 1.1E-05 35.6 4.6 52 322-379 12-63 (66)
224 TIGR01268 Phe4hydrox_tetr phen 90.5 1.2 2.7E-05 47.9 8.8 67 314-380 16-84 (436)
225 PRK05007 PII uridylyl-transfer 90.3 0.9 1.9E-05 52.5 8.3 66 315-380 702-772 (884)
226 TIGR01270 Trp_5_monoox tryptop 90.1 1.3 2.9E-05 48.0 8.7 73 77-149 29-105 (464)
227 COG2150 Predicted regulator of 90.0 0.98 2.1E-05 42.8 6.8 73 76-150 90-166 (167)
228 cd04936 ACT_AKii-LysC-BS-like_ 89.5 2 4.4E-05 31.7 7.0 50 86-141 10-59 (63)
229 COG0527 LysC Aspartokinases [A 89.3 6.4 0.00014 42.5 13.2 127 78-215 309-442 (447)
230 PRK01759 glnD PII uridylyl-tra 89.3 1.1 2.4E-05 51.6 7.9 67 315-381 678-749 (854)
231 TIGR00656 asp_kin_monofn aspar 89.2 1.6 3.4E-05 45.3 8.3 106 315-430 261-374 (401)
232 PF13840 ACT_7: ACT domain ; P 89.1 0.76 1.7E-05 36.3 4.6 46 323-377 19-64 (65)
233 cd04933 ACT_AK1-AT_1 ACT domai 88.7 1.3 2.9E-05 36.7 6.0 40 86-129 11-50 (78)
234 PLN02550 threonine dehydratase 88.5 12 0.00025 42.0 14.9 135 77-218 415-575 (591)
235 PLN02317 arogenate dehydratase 88.5 2.2 4.9E-05 45.2 8.9 66 79-144 283-367 (382)
236 PRK00275 glnD PII uridylyl-tra 88.4 1.3 2.9E-05 51.2 7.9 66 78-143 813-885 (895)
237 cd04914 ACT_AKi-DapG-BS_1 ACT 88.3 1.1 2.3E-05 35.5 5.0 39 321-365 9-47 (67)
238 TIGR00657 asp_kinases aspartat 88.0 5.4 0.00012 42.2 11.5 115 90-215 315-437 (441)
239 COG3830 ACT domain-containing 88.0 0.75 1.6E-05 39.7 4.2 50 77-128 1-52 (90)
240 PRK02047 hypothetical protein; 87.8 5.7 0.00012 33.9 9.4 73 313-385 15-90 (91)
241 cd04892 ACT_AK-like_2 ACT doma 87.1 1.7 3.6E-05 31.7 5.2 53 321-379 10-62 (65)
242 PF09383 NIL: NIL domain; Int 87.0 2.5 5.4E-05 33.9 6.5 59 163-221 4-75 (76)
243 PRK08639 threonine dehydratase 86.6 4.9 0.00011 42.5 10.2 81 313-396 335-417 (420)
244 PRK08526 threonine dehydratase 86.5 3.2 6.9E-05 43.9 8.7 67 313-379 325-395 (403)
245 PF04350 PilO: Pilus assembly 86.1 1.8 4E-05 37.9 5.8 65 88-152 51-120 (144)
246 PRK09034 aspartate kinase; Rev 86.1 12 0.00027 40.0 13.0 118 87-215 319-446 (454)
247 PF13840 ACT_7: ACT domain ; P 86.0 2.3 5E-05 33.5 5.7 45 88-139 19-63 (65)
248 cd04919 ACT_AK-Hom3_2 ACT doma 85.8 2.2 4.8E-05 32.4 5.4 50 87-140 12-61 (66)
249 cd04923 ACT_AK-LysC-DapG-like_ 85.7 1.8 3.8E-05 32.1 4.7 50 321-378 10-59 (63)
250 PRK01759 glnD PII uridylyl-tra 85.6 2.5 5.5E-05 48.7 8.0 64 314-378 783-851 (854)
251 TIGR02079 THD1 threonine dehyd 85.5 5.8 0.00013 41.9 10.0 81 313-396 324-406 (409)
252 PRK04374 PII uridylyl-transfer 85.4 2.6 5.7E-05 48.9 8.0 64 315-378 691-757 (869)
253 PRK15385 magnesium transport p 84.9 7.7 0.00017 38.5 9.9 73 77-149 140-219 (225)
254 cd04918 ACT_AK1-AT_2 ACT domai 84.7 2.1 4.5E-05 33.4 4.9 50 323-378 12-61 (65)
255 cd04922 ACT_AKi-HSDH-ThrA_2 AC 84.6 2.7 5.8E-05 31.7 5.3 40 86-127 11-50 (66)
256 cd04892 ACT_AK-like_2 ACT doma 84.5 3 6.6E-05 30.3 5.4 52 86-141 10-61 (65)
257 PRK00907 hypothetical protein; 84.0 7.9 0.00017 33.4 8.4 73 313-385 16-91 (92)
258 PRK09224 threonine dehydratase 83.8 33 0.00071 37.5 15.0 76 78-157 327-405 (504)
259 COG0788 PurU Formyltetrahydrof 83.6 2.8 6.1E-05 42.8 6.4 152 76-238 4-181 (287)
260 cd04868 ACT_AK-like ACT domain 83.1 3.5 7.7E-05 29.3 5.2 48 323-376 12-59 (60)
261 PRK09084 aspartate kinase III; 82.7 23 0.00051 37.9 13.3 114 88-215 318-443 (448)
262 cd04914 ACT_AKi-DapG-BS_1 ACT 82.6 4 8.7E-05 32.3 5.7 38 86-127 9-46 (67)
263 cd04868 ACT_AK-like ACT domain 82.6 5.3 0.00012 28.3 6.0 38 88-127 12-49 (60)
264 cd04911 ACT_AKiii-YclM-BS_1 AC 82.3 3.6 7.9E-05 34.3 5.5 60 320-385 10-72 (76)
265 PF04350 PilO: Pilus assembly 82.3 5 0.00011 35.2 6.8 67 323-389 51-120 (144)
266 PRK04998 hypothetical protein; 82.0 11 0.00023 31.8 8.4 73 313-385 14-87 (88)
267 PRK09977 putative Mg(2+) trans 81.9 10 0.00022 37.3 9.4 69 315-386 145-213 (215)
268 cd04924 ACT_AK-Arch_2 ACT doma 81.9 3.7 8.1E-05 30.8 5.1 52 86-141 11-62 (66)
269 cd04923 ACT_AK-LysC-DapG-like_ 81.9 9 0.0002 28.2 7.2 38 86-127 10-47 (63)
270 cd04921 ACT_AKi-HSDH-ThrA-like 81.9 3.8 8.2E-05 32.4 5.4 41 321-365 11-51 (80)
271 PRK14434 acylphosphatase; Prov 81.8 3.6 7.8E-05 35.1 5.5 45 171-215 16-64 (92)
272 cd04916 ACT_AKiii-YclM-BS_2 AC 81.4 4.5 9.8E-05 30.4 5.4 41 86-128 11-51 (66)
273 PRK06291 aspartate kinase; Pro 81.3 14 0.0003 39.7 10.9 121 87-215 332-459 (465)
274 PRK12483 threonine dehydratase 80.6 9.9 0.00021 41.8 9.7 103 313-422 344-463 (521)
275 PLN02551 aspartokinase 80.4 20 0.00043 39.5 11.9 115 87-215 377-505 (521)
276 PRK08210 aspartate kinase I; R 80.3 13 0.00028 38.8 10.2 96 316-428 273-374 (403)
277 cd04937 ACT_AKi-DapG-BS_2 ACT 79.8 4.3 9.3E-05 31.4 4.9 50 322-379 12-61 (64)
278 PRK06635 aspartate kinase; Rev 79.8 8.2 0.00018 40.1 8.5 98 321-428 270-375 (404)
279 PRK08961 bifunctional aspartat 79.5 28 0.00061 40.3 13.4 116 86-215 332-457 (861)
280 TIGR01124 ilvA_2Cterm threonin 79.4 11 0.00025 41.0 9.7 77 313-394 324-401 (499)
281 PLN02550 threonine dehydratase 79.4 9.7 0.00021 42.6 9.3 105 312-422 415-533 (591)
282 cd04918 ACT_AK1-AT_2 ACT domai 79.1 6.9 0.00015 30.4 5.9 49 88-140 12-60 (65)
283 cd04937 ACT_AKi-DapG-BS_2 ACT 78.7 7.6 0.00017 30.0 6.0 49 86-140 11-59 (64)
284 COG0788 PurU Formyltetrahydrof 78.0 5.5 0.00012 40.8 6.3 70 311-381 4-76 (287)
285 cd04911 ACT_AKiii-YclM-BS_1 AC 77.5 6.5 0.00014 32.8 5.6 60 86-149 11-73 (76)
286 PRK14426 acylphosphatase; Prov 77.4 6.5 0.00014 33.4 5.7 45 171-215 18-64 (92)
287 TIGR01124 ilvA_2Cterm threonin 76.6 65 0.0014 35.3 14.4 75 78-156 324-400 (499)
288 PRK09181 aspartate kinase; Val 76.0 40 0.00088 36.7 12.6 116 87-214 340-461 (475)
289 PRK08526 threonine dehydratase 75.9 13 0.00028 39.4 8.6 65 77-141 324-394 (403)
290 COG0527 LysC Aspartokinases [A 75.5 16 0.00036 39.4 9.4 108 315-435 311-425 (447)
291 PRK14429 acylphosphatase; Prov 75.2 8.6 0.00019 32.5 5.8 45 171-215 16-62 (90)
292 cd04921 ACT_AKi-HSDH-ThrA-like 75.1 11 0.00025 29.6 6.3 41 85-127 10-50 (80)
293 PRK00341 hypothetical protein; 74.9 21 0.00046 30.5 8.2 71 314-385 17-90 (91)
294 PRK09224 threonine dehydratase 73.6 22 0.00048 38.7 10.0 78 313-395 327-406 (504)
295 PF04455 Saccharop_dh_N: LOR/S 73.5 8.9 0.00019 33.8 5.6 57 325-382 15-74 (103)
296 PF00708 Acylphosphatase: Acyl 72.9 7.2 0.00016 32.5 4.8 45 171-215 18-64 (91)
297 PRK08639 threonine dehydratase 72.4 28 0.0006 36.9 10.1 80 77-158 334-416 (420)
298 PRK14420 acylphosphatase; Prov 71.9 10 0.00022 31.9 5.5 45 171-215 16-62 (91)
299 PF02700 PurS: Phosphoribosylf 71.9 17 0.00038 30.4 6.8 55 315-376 1-65 (80)
300 PRK09466 metL bifunctional asp 71.7 57 0.0012 37.9 13.1 117 88-215 329-450 (810)
301 TIGR02079 THD1 threonine dehyd 71.4 28 0.00061 36.8 9.8 80 78-159 324-406 (409)
302 cd04915 ACT_AK-Ectoine_2 ACT d 71.1 15 0.00032 28.9 6.0 47 89-139 14-60 (66)
303 PF10741 T2SM_b: Type II secre 70.8 22 0.00047 30.6 7.4 63 91-153 17-84 (110)
304 PF04359 DUF493: Protein of un 70.7 22 0.00047 29.5 7.1 73 313-385 9-84 (85)
305 PRK09977 putative Mg(2+) trans 70.3 30 0.00065 34.0 9.1 67 80-149 145-213 (215)
306 PRK14445 acylphosphatase; Prov 70.0 12 0.00026 31.6 5.5 45 171-215 18-64 (91)
307 PRK14422 acylphosphatase; Prov 69.7 13 0.00027 31.8 5.6 45 171-215 20-66 (93)
308 PRK14436 acylphosphatase; Prov 69.4 13 0.00029 31.5 5.7 45 171-215 18-64 (91)
309 cd04915 ACT_AK-Ectoine_2 ACT d 69.2 13 0.00027 29.3 5.2 49 324-378 14-62 (66)
310 PF02700 PurS: Phosphoribosylf 68.6 23 0.0005 29.7 6.8 44 80-128 1-49 (80)
311 PRK14428 acylphosphatase; Prov 68.4 16 0.00034 31.7 6.0 45 171-215 22-68 (97)
312 PRK00227 glnD PII uridylyl-tra 67.4 29 0.00062 39.7 9.4 66 80-146 547-620 (693)
313 PRK09181 aspartate kinase; Val 67.0 15 0.00032 40.0 6.9 94 323-430 341-438 (475)
314 cd04920 ACT_AKiii-DAPDC_2 ACT 66.9 13 0.00028 28.9 4.8 49 322-378 11-59 (63)
315 PLN02551 aspartokinase 66.6 11 0.00024 41.4 5.9 90 323-428 378-479 (521)
316 PRK09084 aspartate kinase III; 66.6 21 0.00045 38.3 7.8 92 323-430 318-421 (448)
317 PRK14433 acylphosphatase; Prov 66.5 15 0.00033 30.9 5.5 45 171-215 15-61 (87)
318 PRK14645 hypothetical protein; 66.4 18 0.00039 33.8 6.4 109 86-204 5-135 (154)
319 PRK14449 acylphosphatase; Prov 66.3 18 0.00039 30.6 5.8 45 171-215 17-63 (90)
320 PRK10820 DNA-binding transcrip 66.2 16 0.00036 39.7 7.1 71 317-392 3-74 (520)
321 PRK14444 acylphosphatase; Prov 66.0 18 0.00039 30.8 5.8 45 171-215 18-64 (92)
322 PRK14427 acylphosphatase; Prov 65.7 17 0.00038 31.0 5.7 45 171-215 20-66 (94)
323 PF10741 T2SM_b: Type II secre 65.5 39 0.00084 29.1 7.9 65 326-390 17-84 (110)
324 PRK14439 acylphosphatase; Prov 65.2 16 0.00035 34.8 5.8 47 171-217 89-137 (163)
325 PF00585 Thr_dehydrat_C: C-ter 64.7 42 0.0009 28.4 7.8 80 312-395 8-88 (91)
326 PRK14430 acylphosphatase; Prov 64.6 19 0.0004 30.8 5.7 45 171-215 18-64 (92)
327 PRK14423 acylphosphatase; Prov 64.5 19 0.00041 30.6 5.7 45 171-215 19-65 (92)
328 cd04910 ACT_AK-Ectoine_1 ACT d 64.4 27 0.00059 28.7 6.4 52 89-144 14-65 (71)
329 cd04917 ACT_AKiii-LysC-EC_2 AC 63.9 16 0.00035 28.0 4.7 49 322-378 12-60 (64)
330 PF01985 CRS1_YhbY: CRS1 / Yhb 63.4 57 0.0012 27.2 8.3 68 367-434 4-82 (84)
331 PRK08961 bifunctional aspartat 63.3 23 0.0005 41.1 7.8 93 322-430 333-435 (861)
332 PRK14432 acylphosphatase; Prov 63.1 20 0.00044 30.6 5.6 45 171-215 16-63 (93)
333 PRK14435 acylphosphatase; Prov 63.0 19 0.00042 30.4 5.5 45 171-215 16-62 (90)
334 PRK14447 acylphosphatase; Prov 62.6 21 0.00047 30.5 5.7 45 171-215 18-65 (95)
335 PRK14438 acylphosphatase; Prov 62.5 21 0.00046 30.2 5.6 45 171-215 17-63 (91)
336 PRK14442 acylphosphatase; Prov 62.2 20 0.00043 30.4 5.4 45 171-215 18-64 (91)
337 PRK08841 aspartate kinase; Val 62.1 14 0.00031 38.9 5.5 60 315-382 319-378 (392)
338 PRK14637 hypothetical protein; 61.9 40 0.00087 31.4 7.8 104 89-201 7-130 (151)
339 COG2844 GlnD UTP:GlnB (protein 61.8 18 0.0004 42.0 6.6 45 74-118 786-830 (867)
340 PRK14441 acylphosphatase; Prov 61.6 22 0.00048 30.2 5.6 45 171-215 19-65 (93)
341 PRK14421 acylphosphatase; Prov 61.6 25 0.00053 30.6 5.9 45 171-215 18-64 (99)
342 PRK09034 aspartate kinase; Rev 61.1 14 0.0003 39.7 5.2 58 316-379 387-447 (454)
343 PRK14451 acylphosphatase; Prov 60.7 23 0.00049 30.0 5.5 45 171-215 17-63 (89)
344 PRK14440 acylphosphatase; Prov 60.6 24 0.00053 29.9 5.6 45 171-215 17-63 (90)
345 PRK14448 acylphosphatase; Prov 59.8 24 0.00053 29.8 5.5 45 171-215 16-62 (90)
346 cd04910 ACT_AK-Ectoine_1 ACT d 59.4 31 0.00067 28.4 5.8 44 172-215 17-62 (71)
347 TIGR00657 asp_kinases aspartat 58.3 43 0.00094 35.5 8.3 91 325-428 315-413 (441)
348 PRK14425 acylphosphatase; Prov 58.2 29 0.00064 29.6 5.8 45 171-215 20-66 (94)
349 PF14257 DUF4349: Domain of un 57.9 2E+02 0.0043 28.4 12.3 73 77-149 49-124 (262)
350 PF02576 DUF150: Uncharacteris 57.6 58 0.0013 29.3 7.9 103 96-205 2-126 (141)
351 PRK05783 hypothetical protein; 56.9 49 0.0011 28.2 6.8 60 78-142 1-67 (84)
352 PRK14446 acylphosphatase; Prov 56.6 22 0.00048 30.2 4.8 45 171-215 16-62 (88)
353 PRK14443 acylphosphatase; Prov 56.3 34 0.00074 29.4 5.9 45 171-215 18-64 (93)
354 PRK14450 acylphosphatase; Prov 56.2 30 0.00065 29.2 5.5 45 171-215 16-63 (91)
355 PRK09466 metL bifunctional asp 56.0 69 0.0015 37.3 10.0 100 323-435 329-433 (810)
356 COG1828 PurS Phosphoribosylfor 55.7 41 0.00088 28.8 6.1 58 80-142 2-66 (83)
357 PRK02047 hypothetical protein; 55.6 88 0.0019 26.7 8.2 69 78-146 15-88 (91)
358 PRK05925 aspartate kinase; Pro 55.2 2.5E+02 0.0053 30.4 13.4 112 89-214 311-429 (440)
359 PRK14640 hypothetical protein; 55.0 1.6E+02 0.0034 27.3 10.5 106 91-203 7-134 (152)
360 cd03709 lepA_C lepA_C: This fa 54.7 43 0.00094 27.3 6.0 55 161-215 3-61 (80)
361 KOG2797 Prephenate dehydratase 54.5 49 0.0011 34.9 7.6 38 77-114 279-316 (377)
362 cd04917 ACT_AKiii-LysC-EC_2 AC 53.9 38 0.00082 25.8 5.3 49 86-140 11-59 (64)
363 cd04907 ACT_ThrD-I_2 Second of 53.8 1.3E+02 0.0028 25.0 9.1 76 315-394 2-77 (81)
364 PF01985 CRS1_YhbY: CRS1 / Yhb 53.7 81 0.0018 26.3 7.6 35 163-197 44-82 (84)
365 COG1828 PurS Phosphoribosylfor 53.6 43 0.00092 28.7 5.9 43 315-364 2-49 (83)
366 PF04455 Saccharop_dh_N: LOR/S 53.4 43 0.00094 29.6 6.1 56 90-145 15-74 (103)
367 PF00585 Thr_dehydrat_C: C-ter 53.2 69 0.0015 27.1 7.2 79 76-158 7-88 (91)
368 PRK14646 hypothetical protein; 52.3 1.7E+02 0.0037 27.3 10.2 106 91-203 8-137 (155)
369 PRK14637 hypothetical protein; 52.1 87 0.0019 29.2 8.3 111 324-443 7-135 (151)
370 TIGR01269 Tyr_3_monoox tyrosin 52.1 66 0.0014 35.3 8.4 73 310-383 35-111 (457)
371 cd04920 ACT_AKiii-DAPDC_2 ACT 51.3 63 0.0014 25.0 6.2 48 86-139 10-57 (63)
372 PF02641 DUF190: Uncharacteriz 51.3 16 0.00036 31.3 3.2 34 182-215 52-86 (101)
373 PRK14636 hypothetical protein; 51.2 1.5E+02 0.0032 28.4 9.9 104 90-200 5-132 (176)
374 cd03710 BipA_TypA_C BipA_TypA_ 51.1 44 0.00096 27.0 5.5 55 161-215 3-60 (79)
375 COG2844 GlnD UTP:GlnB (protein 51.0 44 0.00096 39.1 7.3 39 313-351 790-828 (867)
376 PF00013 KH_1: KH domain syndr 50.9 53 0.0011 24.8 5.6 41 172-213 18-60 (60)
377 PRK14452 acylphosphatase; Prov 50.8 42 0.0009 29.7 5.6 45 171-215 34-80 (107)
378 PRK05783 hypothetical protein; 50.5 63 0.0014 27.6 6.5 60 313-379 1-67 (84)
379 PRK09436 thrA bifunctional asp 50.0 62 0.0013 37.6 8.4 122 86-215 325-457 (819)
380 PRK14437 acylphosphatase; Prov 50.0 40 0.00087 29.8 5.4 45 171-215 37-83 (109)
381 PRK06291 aspartate kinase; Pro 49.8 26 0.00057 37.6 5.1 96 323-428 333-433 (465)
382 PRK14424 acylphosphatase; Prov 48.7 47 0.001 28.6 5.5 45 171-215 21-67 (94)
383 PRK14634 hypothetical protein; 47.5 2.4E+02 0.0052 26.3 11.5 106 90-202 7-136 (155)
384 PF03462 PCRF: PCRF domain; I 46.8 55 0.0012 28.8 5.8 39 328-366 69-107 (115)
385 PF08753 NikR_C: NikR C termin 45.7 1.7E+02 0.0037 24.0 9.1 70 81-150 3-74 (78)
386 PRK00907 hypothetical protein; 45.5 1.6E+02 0.0034 25.5 8.2 69 78-146 16-89 (92)
387 PRK14431 acylphosphatase; Prov 45.3 73 0.0016 27.0 6.1 44 171-215 16-61 (89)
388 TIGR00302 phosphoribosylformyl 44.8 81 0.0017 26.0 6.2 54 316-376 2-65 (80)
389 PF09377 SBDS_C: SBDS protein 44.7 1.1E+02 0.0025 27.3 7.6 101 88-215 20-124 (125)
390 TIGR01269 Tyr_3_monoox tyrosin 44.1 94 0.002 34.1 8.1 71 78-149 38-114 (457)
391 PRK10820 DNA-binding transcrip 43.8 52 0.0011 35.9 6.3 67 82-151 3-70 (520)
392 PRK14632 hypothetical protein; 43.7 1.7E+02 0.0036 27.9 8.9 107 92-202 10-137 (172)
393 PRK00092 ribosome maturation p 43.5 2.7E+02 0.0058 25.7 12.3 107 91-202 8-134 (154)
394 PRK04998 hypothetical protein; 43.5 1.6E+02 0.0036 24.7 8.0 69 78-146 14-85 (88)
395 PF09186 DUF1949: Domain of un 43.3 75 0.0016 23.3 5.3 48 167-215 2-51 (56)
396 PRK00092 ribosome maturation p 43.2 1.3E+02 0.0028 27.7 7.9 109 326-439 8-134 (154)
397 PRK00227 glnD PII uridylyl-tra 39.1 85 0.0018 36.1 7.2 87 315-406 547-639 (693)
398 cd04907 ACT_ThrD-I_2 Second of 38.6 2.3E+02 0.0049 23.5 9.1 75 80-157 2-77 (81)
399 PF03927 NapD: NapD protein; 38.4 1.9E+02 0.004 24.0 7.4 67 79-150 3-71 (79)
400 cd02393 PNPase_KH Polynucleoti 37.3 87 0.0019 24.4 5.0 39 173-213 21-60 (61)
401 PRK05974 phosphoribosylformylg 37.2 1.2E+02 0.0027 24.9 6.2 54 316-376 2-65 (80)
402 PRK14645 hypothetical protein; 36.9 1.8E+02 0.004 27.2 7.9 114 321-444 5-138 (154)
403 PRK14638 hypothetical protein; 36.8 1.8E+02 0.0039 27.0 7.8 101 92-201 10-131 (150)
404 PRK14631 hypothetical protein; 36.4 3.9E+02 0.0085 25.5 10.6 105 91-202 9-155 (174)
405 PRK09436 thrA bifunctional asp 36.4 49 0.0011 38.4 4.9 57 316-378 398-457 (819)
406 TIGR00300 conserved hypothetic 36.3 75 0.0016 34.3 5.8 55 325-380 15-72 (407)
407 PF13399 LytR_C: LytR cell env 36.3 1.1E+02 0.0024 24.9 5.8 59 316-377 3-65 (90)
408 COG2921 Uncharacterized conser 35.9 2.5E+02 0.0055 24.6 7.9 72 314-385 15-89 (90)
409 PF00560 LRR_1: Leucine Rich R 35.8 13 0.00029 23.4 0.2 12 9-20 3-14 (22)
410 PRK14640 hypothetical protein; 35.3 2.2E+02 0.0048 26.4 8.2 114 326-444 7-138 (152)
411 PRK14639 hypothetical protein; 34.9 2.2E+02 0.0048 26.1 8.0 94 98-200 5-118 (140)
412 PF03927 NapD: NapD protein; 34.2 2.1E+02 0.0046 23.7 7.1 66 315-386 4-70 (79)
413 COG2102 Predicted ATPases of P 33.9 72 0.0016 31.9 4.9 119 100-218 20-174 (223)
414 TIGR00302 phosphoribosylformyl 32.8 1.5E+02 0.0033 24.4 6.0 44 81-129 2-50 (80)
415 cd01514 Elongation_Factor_C El 31.7 1.2E+02 0.0027 24.1 5.2 55 161-215 3-60 (79)
416 PRK14636 hypothetical protein; 31.3 2.3E+02 0.0051 27.0 7.8 108 325-437 5-132 (176)
417 PF13504 LRR_7: Leucine rich r 31.1 15 0.00033 22.1 -0.1 13 8-20 3-15 (17)
418 PRK14646 hypothetical protein; 31.1 3.1E+02 0.0067 25.6 8.5 114 325-443 7-140 (155)
419 PRK05925 aspartate kinase; Pro 30.1 1.9E+02 0.004 31.4 7.7 95 324-434 311-412 (440)
420 PRK00341 hypothetical protein; 30.0 3.3E+02 0.0071 23.3 7.8 67 79-146 17-88 (91)
421 cd03713 EFG_mtEFG_C EFG_mtEFG_ 30.0 1.2E+02 0.0025 24.2 4.8 55 161-215 3-59 (78)
422 cd03711 Tet_C Tet_C: C-terminu 29.4 1.4E+02 0.0031 23.8 5.3 55 161-215 3-59 (78)
423 PF10842 DUF2642: Protein of u 29.4 47 0.001 27.2 2.4 23 418-440 31-53 (66)
424 cd03709 lepA_C lepA_C: This fa 29.1 1.1E+02 0.0024 24.9 4.6 50 399-448 4-58 (80)
425 PRK14434 acylphosphatase; Prov 28.7 1E+02 0.0022 26.3 4.5 41 409-449 17-62 (92)
426 KOG2219 Uncharacterized conser 28.2 68 0.0015 36.8 4.1 48 2-57 795-842 (864)
427 TIGR03737 PRTRC_B PRTRC system 28.2 47 0.001 33.2 2.7 40 13-52 65-110 (228)
428 PRK08841 aspartate kinase; Val 27.8 1.4E+02 0.0031 31.6 6.3 57 81-143 320-376 (392)
429 PRK14644 hypothetical protein; 27.0 3.5E+02 0.0076 24.8 7.9 95 98-199 6-118 (136)
430 cd04098 eEF2_C_snRNP eEF2_C_sn 26.4 1.5E+02 0.0033 24.1 5.0 56 161-216 3-62 (80)
431 PF13399 LytR_C: LytR cell env 26.0 2.1E+02 0.0046 23.3 5.8 59 81-140 3-65 (90)
432 cd04097 mtEFG1_C mtEFG1_C: C-t 25.3 1.7E+02 0.0037 23.4 5.0 55 161-215 3-59 (78)
433 PRK14634 hypothetical protein; 25.2 5.1E+02 0.011 24.2 8.8 114 325-443 7-140 (155)
434 PRK14426 acylphosphatase; Prov 25.1 1.1E+02 0.0025 25.8 4.1 42 408-449 18-62 (92)
435 PF09383 NIL: NIL domain; Int 24.7 2.3E+02 0.0051 22.4 5.7 54 326-380 17-70 (76)
436 smart00838 EFG_C Elongation fa 24.6 1.7E+02 0.0038 23.7 5.0 55 161-215 5-61 (85)
437 PF05496 RuvB_N: Holliday junc 24.5 34 0.00073 34.3 0.9 20 20-39 48-67 (233)
438 PF02576 DUF150: Uncharacteris 24.4 1.8E+02 0.004 26.1 5.6 103 331-440 2-124 (141)
439 PF01709 Transcrip_reg: Transc 23.9 1.4E+02 0.0031 29.6 5.1 60 324-387 172-231 (234)
440 cd03710 BipA_TypA_C BipA_TypA_ 23.9 1.5E+02 0.0033 23.9 4.5 50 399-448 4-57 (79)
441 TIGR00253 RNA_bind_YhbY putati 23.5 2.7E+02 0.0059 24.2 6.1 53 128-197 28-82 (95)
442 PRK14440 acylphosphatase; Prov 23.1 3.3E+02 0.0072 23.0 6.5 38 114-151 36-73 (90)
443 PF00107 ADH_zinc_N: Zinc-bind 23.1 1.4E+02 0.0029 25.2 4.2 46 175-225 46-92 (130)
444 PRK13558 bacterio-opsin activa 23.0 1E+03 0.022 26.1 14.6 134 80-225 450-588 (665)
445 KOG2972 Uncharacterized conser 23.0 44 0.00095 34.1 1.4 65 317-387 207-271 (276)
446 PF00708 Acylphosphatase: Acyl 22.4 1.1E+02 0.0024 25.3 3.6 40 409-448 19-61 (91)
447 KOG0456 Aspartate kinase [Amin 22.4 1E+02 0.0022 33.7 4.0 53 320-378 480-532 (559)
448 PRK14647 hypothetical protein; 22.3 6.4E+02 0.014 23.5 10.1 102 92-200 10-138 (159)
449 cd02394 vigilin_like_KH K homo 22.2 2.1E+02 0.0045 21.6 4.7 39 174-213 20-61 (62)
450 KOG3820 Aromatic amino acid hy 22.1 2.7E+02 0.0058 30.5 6.9 63 80-142 37-102 (461)
451 PF01709 Transcrip_reg: Transc 21.9 97 0.0021 30.7 3.5 60 89-150 172-231 (234)
452 KOG2797 Prephenate dehydratase 21.8 1.4E+02 0.0029 31.8 4.6 41 311-351 278-318 (377)
453 COG3283 TyrR Transcriptional r 21.8 2.7E+02 0.0059 30.5 6.9 78 317-399 3-81 (511)
454 PF04359 DUF493: Protein of un 21.7 3.9E+02 0.0084 22.0 6.6 69 78-146 9-82 (85)
455 PRK14423 acylphosphatase; Prov 21.5 1.3E+02 0.0029 25.4 3.9 34 357-390 44-77 (92)
456 cd04096 eEF2_snRNP_like_C eEF2 21.3 1.7E+02 0.0037 23.4 4.3 56 161-216 3-62 (80)
457 PRK14631 hypothetical protein; 21.2 7.2E+02 0.016 23.8 9.1 110 326-440 9-156 (174)
458 cd08230 glucose_DH Glucose deh 20.8 5.1E+02 0.011 25.9 8.5 26 194-219 240-265 (355)
459 COG1534 Predicted RNA-binding 20.3 6.1E+02 0.013 22.4 8.4 42 400-441 45-90 (97)
460 TIGR00253 RNA_bind_YhbY putati 20.0 5.8E+02 0.013 22.1 8.6 23 412-434 60-82 (95)
No 1
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=1.2e-50 Score=372.19 Aligned_cols=157 Identities=52% Similarity=0.827 Sum_probs=153.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~ 155 (450)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. ||+++++|++.++|++|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 5899999999999999999999999999999999999987774 99999999999999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 013068 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (450)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~ 234 (450)
+|+|||+||||++++.+|.+|++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999963
No 2
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=3.6e-50 Score=367.68 Aligned_cols=155 Identities=52% Similarity=0.801 Sum_probs=151.3
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchh
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~ 156 (450)
+|+|+++++|+||+|+||+++|+||||||+|++++++++++. ||++++++++.++||.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 589999999999999999999999999999999999987774 999999999999999999999999999999999999
Q ss_pred hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 013068 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK 233 (450)
Q Consensus 157 V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~ 233 (450)
|+||||||||++++++|.+|++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=2.8e-50 Score=373.82 Aligned_cols=164 Identities=59% Similarity=0.889 Sum_probs=157.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~ 155 (450)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||++.++++.++||.+||+||+||++|+++++++
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 5899999999999999999999999999999999999999975 99999999888999999999999999999999999
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 013068 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235 (450)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~~ 235 (450)
+|+||||||||++++++|.||++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.|++..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred CCcccc
Q 013068 236 DTAPFW 241 (450)
Q Consensus 236 ~~~~~~ 241 (450)
...++.
T Consensus 161 ~~~~l~ 166 (174)
T CHL00100 161 NTEYLR 166 (174)
T ss_pred hHHHHH
Confidence 554443
No 4
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=364.67 Aligned_cols=160 Identities=50% Similarity=0.768 Sum_probs=155.5
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEecCC
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
.+|+|+||++++|+||+|+||+|+|+||||||+||+|++|++++ +|||++.||+..++|++|||+||+||++|.++++
T Consensus 1 ~~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~ 80 (163)
T COG0440 1 MPMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTS 80 (163)
T ss_pred CCceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCC
Confidence 36899999999999999999999999999999999999999997 5999999998999999999999999999999999
Q ss_pred chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 013068 154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK 233 (450)
Q Consensus 154 ~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~ 233 (450)
+++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|+||+++|+++|++.|+||||+|++|||.+||.||+
T Consensus 81 ~~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~ 160 (163)
T COG0440 81 EPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGP 160 (163)
T ss_pred cchhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccC
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 013068 234 LG 235 (450)
Q Consensus 234 ~~ 235 (450)
..
T Consensus 161 ~~ 162 (163)
T COG0440 161 KK 162 (163)
T ss_pred CC
Confidence 53
No 5
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-51 Score=396.60 Aligned_cols=236 Identities=51% Similarity=0.739 Sum_probs=219.7
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.++.++|+|++||.|+||+|+||+|+|++||||||||.||.||++++ ||||+.|.|+.++|.++||+||++|++|.||
T Consensus 72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy 151 (309)
T KOG2663|consen 72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY 151 (309)
T ss_pred cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence 46899999999999999999999999999999999999999999985 8999999999999999999999999999999
Q ss_pred CCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 013068 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (450)
Q Consensus 152 t~~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R 231 (450)
+++++|+|||||+||+ ++..+.|+| ||..++++++|+|||++ ++...|++|+|-|++|||. |+.|
T Consensus 152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr 216 (309)
T KOG2663|consen 152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR 216 (309)
T ss_pred CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence 9999999999999998 899999999 99999999999999999 7889999999999999999 8999
Q ss_pred CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCC
Q 013068 232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG 311 (450)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~ 311 (450)
.+++.++++|+|+++.||++.+..+...+.+.. +.+|||||++++.++- | +++++.+|
T Consensus 217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp~---------g-vle~~rSG 274 (309)
T KOG2663|consen 217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDPK---------G-VLEEDRSG 274 (309)
T ss_pred HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCcc---------c-chhhcccc
Confidence 999999999999999999998877777755433 5679999999974432 2 56889999
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g 364 (450)
++.||++.++.|-| ++++|+.|.+++||||.+.+|
T Consensus 275 l~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg 309 (309)
T KOG2663|consen 275 LRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG 309 (309)
T ss_pred hhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence 99999999999999 999999999999999988765
No 6
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=4.8e-43 Score=321.96 Aligned_cols=137 Identities=46% Similarity=0.719 Sum_probs=132.7
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~ 392 (450)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++||++.++||.|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL 449 (450)
Q Consensus 393 ~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L 449 (450)
+|+|||+||||++++.+|.+|++++++|||||+|++++++++|+||+++|+ +|++.|
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l 138 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLL 138 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998 556554
No 7
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=324.06 Aligned_cols=136 Identities=46% Similarity=0.686 Sum_probs=132.3
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~ 391 (450)
+|+|+||++|+|+||||+|++|||+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 57999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhhhhh
Q 013068 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFD 447 (450)
Q Consensus 392 ~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~~~~ 447 (450)
++++|||||+||++++..|.|+.+++++|||+|+|++++++++|+||+++|++.|-
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi 137 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFI 137 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986553
No 8
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=1.4e-42 Score=317.80 Aligned_cols=136 Identities=42% Similarity=0.690 Sum_probs=131.8
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChh
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF 393 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~ 393 (450)
+|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++|+++.++||.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068 394 AERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL 449 (450)
Q Consensus 394 V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L 449 (450)
|+||||||||++++++|.+|++++++|||+|||++++++++|+||+++|+ +|++.|
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l 137 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELL 137 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988 555554
No 9
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=3.9e-42 Score=319.45 Aligned_cols=137 Identities=50% Similarity=0.784 Sum_probs=131.8
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~ 392 (450)
|+|+|+++++|+||+|+||+++|+||||||+||++++++++++|||||+++++++.++||.+||+||+||++|.++++.+
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 48999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL 449 (450)
Q Consensus 393 ~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L 449 (450)
+|+||||||||++++.+|.+|++++++|||||+|++++++++|+||+++|++ |++.|
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l 138 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLL 138 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999985 44443
No 10
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.98 E-value=1.5e-32 Score=233.55 Aligned_cols=90 Identities=23% Similarity=0.377 Sum_probs=85.7
Q ss_pred CCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 309 ~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
++.+.+|+||++|+|+||||+||+|||+||||||+||+||+|+++++|||||++. +++.++||+|||+||+||++|.++
T Consensus 3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEEC
Confidence 4556789999999999999999999999999999999999999999999999999 568999999999999999999999
Q ss_pred CCChhHHHhhh
Q 013068 389 THLPFAERELI 399 (450)
Q Consensus 389 t~~~~V~REL~ 399 (450)
++++++++|+.
T Consensus 82 ~~~~~v~~e~~ 92 (96)
T PRK08178 82 QSDPTMFNKIA 92 (96)
T ss_pred CCchhHHHHHH
Confidence 99999999985
No 11
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.97 E-value=5e-32 Score=225.47 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=76.1
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEE--ecC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ--DIT 389 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~--dlt 389 (450)
|+|+||++|+|+||||+||+|+|+||||||+||+||+||+|++||||||++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 479999999999999999999999999999999999999999999999998 99999999999999999999999 777
Q ss_pred CC
Q 013068 390 HL 391 (450)
Q Consensus 390 ~~ 391 (450)
+.
T Consensus 81 ~~ 82 (84)
T PRK13562 81 DN 82 (84)
T ss_pred cc
Confidence 64
No 12
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=99.97 E-value=1.8e-32 Score=265.97 Aligned_cols=120 Identities=39% Similarity=0.621 Sum_probs=117.3
Q ss_pred CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
..++|+|+++|+|+||||+||+|+|+||||||+||.||-+|++.+||||||+.|+|+.++|.++||+||++|++|.|++.
T Consensus 74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~ 153 (309)
T KOG2663|consen 74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTN 153 (309)
T ss_pred cccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCch
Q 013068 391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINN 441 (450)
Q Consensus 391 ~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~e 441 (450)
+++|+|||||+||+ +-..+.||| +|..+++.++|+||++.
T Consensus 154 e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg 193 (309)
T KOG2663|consen 154 EPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG 193 (309)
T ss_pred ChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch
Confidence 99999999999998 779999999 99999999999999995
No 13
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.97 E-value=1.6e-30 Score=213.00 Aligned_cols=76 Identities=34% Similarity=0.568 Sum_probs=74.3
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
|+|+|+++|+|+||||+||+|+|+||||||+||+||+||++++|||||++.|+++.++||.|||+||+||++|.++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999985
No 14
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=201.86 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=72.6
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d 387 (450)
||+|+|+++|+|+||||+||+|||+||||||+||+||+|+++++|||||++. +++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 6799999999999999999999999999999999999999999999999995 88999999999999999999974
No 15
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.95 E-value=3.4e-28 Score=207.01 Aligned_cols=86 Identities=23% Similarity=0.443 Sum_probs=81.3
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEecCC
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
.+.+|+||++|+|+||||+||+|||+||||||+||+||+|++++ +|||++. ++..++||+|||+||+||++|.++++
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~ 83 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQS 83 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCC
Confidence 36789999999999999999999999999999999999999997 5999998 56899999999999999999999999
Q ss_pred chhhhhhee
Q 013068 154 EPHVERELM 162 (450)
Q Consensus 154 ~~~V~RELa 162 (450)
++.|++|+.
T Consensus 84 ~~~v~~e~~ 92 (96)
T PRK08178 84 DPTMFNKIA 92 (96)
T ss_pred chhHHHHHH
Confidence 999999974
No 16
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.95 E-value=6e-28 Score=201.12 Aligned_cols=78 Identities=27% Similarity=0.485 Sum_probs=74.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEE--ecC
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS 152 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~--dlt 152 (450)
|+|+||++|+|+||+|+||+|+|+||||||+||+||+|+++++ |||+++ ||++.++|++|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 5899999999999999999999999999999999999999984 999998 99999999999999999999999 777
Q ss_pred Cch
Q 013068 153 NEP 155 (450)
Q Consensus 153 ~~~ 155 (450)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 654
No 17
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.94 E-value=1.1e-26 Score=190.35 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=71.2
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
|+|+|+++|+|+||+|+||+|+|+||||||+||++|++++++. |||++.|+++.++||.|||+||+||++|.++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 5899999999999999999999999999999999999999984 9999999999999999999999999999985
No 18
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=181.16 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=69.2
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
||+|+|+++|+|+||+|+||+|+|+||||||+||++++|++++. ||+++ ++++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence 68999999999999999999999999999999999999999974 88888 489999999999999999999985
No 19
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.92 E-value=2.6e-25 Score=180.98 Aligned_cols=75 Identities=47% Similarity=0.753 Sum_probs=70.8
Q ss_pred hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 013068 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (450)
Q Consensus 158 ~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg 232 (450)
+||||||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 599999999998899999999999999999999999999999999999999999999999999999999999997
No 20
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.89 E-value=4.4e-23 Score=162.54 Aligned_cols=63 Identities=59% Similarity=0.920 Sum_probs=59.2
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V 385 (450)
|+||+|+||+++|+||||||+||+|+++++++++||||++.|+++.++||.+||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999999999999999999999999999999999987
No 21
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.81 E-value=5.1e-20 Score=145.16 Aligned_cols=61 Identities=56% Similarity=0.950 Sum_probs=56.1
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEE
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V 148 (450)
|+||+|+||+++|+||||||+||+++++++++. |||+++|+++.++||.+||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999985 9999999999999999999999999987
No 22
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.47 E-value=3.5e-14 Score=115.78 Aligned_cols=55 Identities=42% Similarity=0.623 Sum_probs=48.2
Q ss_pred HHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL 449 (450)
Q Consensus 395 ~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L 449 (450)
+||||||||+++..+|.+|++|++.|+|+|+|++++++++|+||+++|+ +|++.|
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l 56 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLL 56 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999988 566555
No 23
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=99.04 E-value=7.1e-10 Score=92.28 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=72.8
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
||.|.|.+.+..+||.|.||.++-++|||-+.++++.+.-+.+.-.|.++|+++ +.++-|..||+||.||..|+-.-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-RSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-CChHHHHHHHHHHccceeEEEee
Confidence 789999999999999999999999999999999999999999999999999976 69999999999999999997543
No 24
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=99.04 E-value=6.1e-10 Score=92.65 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=69.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
||+|++.+.+..+||.|.||.++-++|||-+.++++...-|.+. +.++|++ ++.++.|..||+||.||..|+..-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence 79999999999999999999999999999999999998887776 8888987 569999999999999999998643
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.86 E-value=1.2e-08 Score=77.39 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=58.4
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccC
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID 381 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLid 381 (450)
|+|.+.+.|+||+|.+|+++|+++|+||.++......+. ...+.++...+....+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 789999999999999999999999999999999999886 555666666778889999999998764
No 26
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.83 E-value=3e-08 Score=75.20 Aligned_cols=71 Identities=55% Similarity=0.918 Sum_probs=63.6
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V 385 (450)
|+|.+.+.|+||+|.+|+.+|+..|+||.++...+....+..++.+.+......+++++++|.++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 79999999999999999999999999999999876535788888888875437899999999999999987
No 27
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.78 E-value=1.8e-08 Score=89.91 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=88.6
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHH--HhhcCceeeEEEecCCc
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE--QLNKLVNVIKVEDISNE 154 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~k--QL~KLiDVi~V~dlt~~ 154 (450)
|+-.+||+|+||+||-|..++..+...|+||..++.+.|.++|+++++|+.++..-.-|.. ..-++.||+.|+.=+
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD-- 78 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMED-- 78 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecC--
Confidence 5678999999999999999999999999999999999999999999999987766555544 455666776666321
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccCCcEE
Q 013068 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG--------DPGKMVAVQRNLSKFGIKE 220 (450)
Q Consensus 155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG--------~~~KIdafi~~L~~fGIlE 220 (450)
.|. -+..|++.++.. |++-+|+.-=++- ..+.+|..++.|++-||.-
T Consensus 79 --------------~PG---~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~ 133 (142)
T COG4747 79 --------------VPG---GLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKL 133 (142)
T ss_pred --------------CCC---cHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCee
Confidence 122 234445554432 3333333222222 3467899999999999853
No 28
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.74 E-value=4.8e-08 Score=74.02 Aligned_cols=64 Identities=28% Similarity=0.465 Sum_probs=55.6
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHhhcCc
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLV 143 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~gde~~ieqL~kQL~KLi 143 (450)
|+|.+.+.|+||+|.+|+++|+++|+||.++......+. ..+.++...+....+++.+.|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHccc
Confidence 789999999999999999999999999999999988874 3455556667888999999998875
No 29
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.69 E-value=2.2e-07 Score=74.70 Aligned_cols=74 Identities=26% Similarity=0.399 Sum_probs=64.2
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~ 386 (450)
-..+|.|.+.|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .+.+.++++++.|+++-+|.+|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 357899999999999999999999999999999999986678888888877 57789999999999999999986
No 30
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.65 E-value=1.4e-07 Score=71.19 Aligned_cols=71 Identities=25% Similarity=0.417 Sum_probs=63.1
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
+|.+.+.|+||+|++|+.+|+.+|+||.++.+.+.+..+...+++.++.. .+++++++|+++.+|.+|..+
T Consensus 1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 36789999999999999999999999999999887656899999999653 588999999999999999764
No 31
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.62 E-value=9.4e-08 Score=99.86 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=67.1
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..+|.|++.++|+||||++|+++|+++|+||+|+...+++. +.++++|+++ .++..++++++||+||.+|.+.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 45799999999999999999999999999999999988654 8999999998 7889999999999999998664
No 32
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=2e-07 Score=72.77 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=42.4
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g 127 (450)
+.|++.++|+||+|++|+.+|+++|+||+++.+.+.++++.+.+.++.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~ 49 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSD 49 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECC
Confidence 578999999999999999999999999999999888776667776743
No 33
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.57 E-value=5.2e-07 Score=68.41 Aligned_cols=69 Identities=59% Similarity=0.947 Sum_probs=58.0
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEE
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V 148 (450)
|+|.+.+.|+||+|.+|+.+|+..|+||.++........+ .+.+.+......+++++++|.++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 7899999999999999999999999999999987642233 35666653337899999999999999987
No 34
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=3.3e-07 Score=70.71 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=62.5
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
|.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++.+++. .+...+++++++|+++.+|.++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 5789999999999999999999999999999887655558888988876 5777899999999999988765
No 35
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.52 E-value=4.7e-07 Score=68.63 Aligned_cols=71 Identities=24% Similarity=0.336 Sum_probs=62.8
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.|.+++. .+++++++|+++-.|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 57889999999999999999999999999998775557888888888865 788999999999999998753
No 36
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=9.7e-07 Score=68.87 Aligned_cols=45 Identities=31% Similarity=0.555 Sum_probs=39.2
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCIT 359 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiT 359 (450)
+.|++.++|+||+|++|+.+|+++|+||+|+.+.+.+++.+.|+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence 468889999999999999999999999999999888776555553
No 37
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.38 E-value=1.2e-06 Score=66.05 Aligned_cols=68 Identities=26% Similarity=0.465 Sum_probs=57.8
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
|.+.+.|+||+|++|+.+|+.+|+||.++.+...+ +...+++.++.. ..++++++|+++-+|.+|..+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 67899999999999999999999999999998765 333467777543 588999999999999999764
No 38
>PRK08577 hypothetical protein; Provisional
Probab=98.38 E-value=3.5e-06 Score=75.19 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=66.6
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEEEec
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V~dl 388 (450)
..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+..++.++++- .+..++++.++|+++-+|..|...
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 3689999999999999999999999999999999887766788888877763 336799999999999999999754
No 39
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=4.6e-06 Score=63.53 Aligned_cols=70 Identities=34% Similarity=0.424 Sum_probs=61.8
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d 387 (450)
.|.+.+.|+||+|++++.+|+..|+||.++...+. ..+..++++.+.+. +.++.+.++|++.-+|..|.-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 47788999999999999999999999999987654 36788899999876 688999999999999999864
No 40
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.33 E-value=6e-06 Score=66.36 Aligned_cols=70 Identities=27% Similarity=0.423 Sum_probs=56.9
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
.-.|.|...|+||+|+.|+.+++..|.||.++++....+.+ . +++-| .+-+.+++|++.|+++-+|.+|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-KDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-SSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-CCHHHHHHHHHHHHCCCCeeEEE
Confidence 45899999999999999999999999999999999875333 3 44445 46779999999999999999986
No 41
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=5.9e-06 Score=64.80 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=60.2
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChh-HHHHHHHHHhcccCEEEEEec
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE-SIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~-~ieQI~kQL~KLidVi~V~dl 388 (450)
.|.+...|+||+|++|++.+++.|.||.+++... ...+..++.+++. .+.+ .+++|+++|+++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5889999999999999999999999999997742 2346777777775 3444 899999999999999999753
No 42
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.28 E-value=2.3e-06 Score=89.62 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=65.0
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHhhcCceeeEE
Q 013068 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted-~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V 148 (450)
.+-..+|.|++.++|+||+|++|+++|+++|+||+|+...+.++ ...+.++++ .++..++++++||+||.+|...
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 34567899999999999999999999999999999999887643 235888877 7889999999999999998654
No 43
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.25 E-value=2.1e-06 Score=66.13 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=57.1
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
|-+..+|+||+|++|+.++++.|+||.++....+. +...+.+.++.. .+++++++|.++.+|.+|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45678999999999999999999999999876543 666666666654 788999999999999999754
No 44
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=4e-06 Score=63.54 Aligned_cols=69 Identities=30% Similarity=0.425 Sum_probs=57.6
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
+|.+.+.|+||+|.+++.+|+..|+||.++.+.+.. +.+.+.+.+++. .+++++++|+++-.|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 478899999999999999999999999999987643 233466767654 788999999999999998753
No 45
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.24 E-value=1.6e-06 Score=66.77 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=56.8
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
+-+..+|+||+|++|+.++++.|+||.++....+.+.+.+.+.++.. .++.++++|.++-+|..|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876654445566666654 788999999999999999764
No 46
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.23 E-value=4e-06 Score=65.00 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=61.0
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
+-+.+.|+||+|++|+.+|+++|.||.++.+.+....+.+.+.+.++++. ...+.+.|.++.+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEEEEe
Confidence 45688999999999999999999999999988876778888888888743 468888999999999988763
No 47
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=5.3e-06 Score=63.95 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=57.5
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted--~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
|.|.+.+.|+||.|++++.+|++.|.||+++...+..+ ...+.+++. .+...++.++++|+++-+|..+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 57899999999999999999999999999998865443 234666554 56788999999999998887653
No 48
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.23 E-value=4.3e-05 Score=72.78 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=49.9
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL 139 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL 139 (450)
+++...|+++=.||||..++|+++++..|.||...+...-.+.--+.+.++++...+.+|...|
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L 68 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTL 68 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHH
Confidence 4477899999999999999999999999999998887766554335556677665555555544
No 49
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=98.16 E-value=1.8e-05 Score=63.21 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=60.3
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
.|.|...|++|+|+.|+.+++..|+||.++.+... +.-++++.+. +...+++++++|.++..|.+|+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999998653 4455666665 5568999999999999999998764
No 50
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.15 E-value=2.3e-05 Score=61.40 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=60.6
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
+|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+++. .+.+.++++++.|+++.+|.--
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 47899999999999999999999999999998654 468888888887 5778899999999999998753
No 51
>PRK08577 hypothetical protein; Provisional
Probab=98.15 E-value=1.8e-05 Score=70.61 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=62.5
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChHHHHHHHHHhhcCceeeEEEec
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~--gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.-..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+ .+++++. ..+..+++++++|+++-+|..|...
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 34578999999999999999999999999999999987655333 3555444 4346899999999999999999854
No 52
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.14 E-value=6.5e-06 Score=61.87 Aligned_cols=50 Identities=24% Similarity=0.531 Sum_probs=42.1
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChHH
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERV 131 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~gde~~ 131 (450)
|++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+++.+.++..+..
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a 51 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERA 51 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHH
Confidence 46899999999999999999999999999999887 445677777764433
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=1.6e-05 Score=62.38 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=57.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.|.+.+.|+||+|++|++.+++.|.||..++..... .... +++.+.+.+..+++|+++|.++-+|.+|+.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 578999999999999999999999999999874322 1122 4454555445999999999999999999854
No 54
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.12 E-value=2.9e-05 Score=56.47 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=59.2
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEE
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~ 386 (450)
|.+.+.|+||.+++++.+|+..++||.++...... .+...+.+.+. .+...++.+.++|.++..|.+|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 56777777775 45678999999999999998875
No 55
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=2.2e-05 Score=59.72 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=58.0
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. ..++.+.++|++.-+|..|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 477899999999999999999999999999876543 233577778776 688899999999999998864
No 56
>PRK00194 hypothetical protein; Validated
Probab=98.07 E-value=5.7e-06 Score=68.00 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=56.3
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC--hhHHHHHHHHHhcccCEEEEE
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd--~~~ieQI~kQL~KLidVi~V~ 386 (450)
|++|++++.-.|+||++++|+++|+.+|.||..+...... +.--+.++++.+ +..++.+.+.|+++-+...+.
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMD--GYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhC--CeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 5689999999999999999999999999999999877643 444454454433 234688888888777665554
No 57
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=2.3e-05 Score=61.01 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=52.1
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.+++.+.|+||.|.+++.+|+++|+||+++...+....+...+.|.+++++ .+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence 578899999999999999999999999999988876788999999998654 3466666665
No 58
>PRK00194 hypothetical protein; Validated
Probab=98.01 E-value=8.7e-06 Score=66.94 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=56.9
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHhhcCceeeEEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL~KLiDVi~V~ 149 (450)
|+++++++.-.|+||++++|+++|+.+|.||..++.....+.-.++++++.+. ..++.|.+.|+++-+...++
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 56999999999999999999999999999999998775332223566666543 34678888887777766655
No 59
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.01 E-value=1.8e-05 Score=61.27 Aligned_cols=69 Identities=23% Similarity=0.437 Sum_probs=55.4
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
+-+...|+||.|++|+.+|+++|.||.++.+.+....+ .+.+.++++ ....+.+.|.++-+|+.|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 45689999999999999999999999999987764333 466666653 3457888899999999888764
No 60
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.00 E-value=1.8e-05 Score=59.45 Aligned_cols=47 Identities=26% Similarity=0.512 Sum_probs=39.9
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g 364 (450)
|++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+...+-+.++.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 46789999999999999999999999999999986 455556666653
No 61
>PRK04435 hypothetical protein; Provisional
Probab=97.97 E-value=8.6e-05 Score=67.75 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=64.4
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-C-hhHHHHHHHHHhcccCEEEEEecC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
+.-+|.+.+.|+||+|+.|+.++++.|.||.+++... ...+...++++++. + +..+++|+.+|+++-.|.+|+-+.
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5689999999999999999999999999999998742 23577778877763 3 348999999999999999998654
No 62
>PRK04435 hypothetical protein; Provisional
Probab=97.96 E-value=5.6e-05 Score=68.96 Aligned_cols=74 Identities=31% Similarity=0.397 Sum_probs=59.7
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEE--EeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIV--V~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
.-+|.+.+.|+||+|++|+.++++.|.||.+++.....+. ..++++ +.+.+..+++|+.+|+++-.|.+|+-+.
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3489999999999999999999999999999987533222 234444 4444558999999999999999998764
No 63
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.94 E-value=3.4e-05 Score=61.60 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=50.7
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecC----CCCeeEEEEEEeCChh-HHHHHHHHHhccc
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPGTDE-SIGKLVQLLHKLI 380 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te----~~~iSRiTIVV~gd~~-~ieQI~kQL~KLi 380 (450)
+++...|+||++++|+.+|+++|.||.++.....+ ..+.-.|++.++.... .+.++.+.|+++-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999996655 3366777777765432 5777777776653
No 64
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.94 E-value=5.3e-05 Score=52.20 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=50.5
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL 376 (450)
|++...|+||++.++++.|+++|+||.++........+..++++.+.... .++.+.++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46788999999999999999999999999998876677888999888664 677777765
No 65
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.91 E-value=4.9e-05 Score=57.68 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=52.5
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEeCCh-hHHHHHHHHHhcc
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPGTD-ESIGKLVQLLHKL 379 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~gd~-~~ieQI~kQL~KL 379 (450)
|.+.+.|+||.|++|+.+++..|.||.++...+.. ..+...+.+.+...+ +.++++.+.|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999988754 367888888877544 6788999998764
No 66
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.89 E-value=9.3e-05 Score=58.86 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=56.1
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccCEE
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLH 383 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi 383 (450)
+.+.++|+||.|++|...|+++|.||.+|.--|... ++-.++.|-+.| ++..++++.+.|.+...-+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~ 71 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV 71 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence 566778999999999999999999999998888765 666777777788 5778999999999865533
No 67
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.88 E-value=6.2e-05 Score=58.46 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=48.2
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
|.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.+++..+ ...+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence 689999999999999999999999999999987776322233455666643 356677776654
No 68
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.86 E-value=0.0001 Score=58.83 Aligned_cols=70 Identities=9% Similarity=0.268 Sum_probs=58.2
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
.|.|...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +-..+++++++|.++-.|.+|+-+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999998654 2212555554 4568999999999999999998653
No 69
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.85 E-value=0.00015 Score=58.56 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=53.1
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC--hhHHHHHHHHHhcccC
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID 381 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--~~~ieQI~kQL~KLid 381 (450)
.+|.+.+.|+||.|.+|..+|+++|+||.|+..-|..+ .....+-+-++|. ++.++++.+.|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 46778889999999999999999999999999888754 4444444445564 6678889999988544
No 70
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00019 Score=56.22 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=55.5
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
+|.+.+.|+||.|++|+.+++..|.||.++...... .+. +.+.+. .+.+.++++++.|+++-+|.--.
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~ 71 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence 478999999999999999999999999999986653 333 555554 46778999999999999987543
No 71
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=8.4e-05 Score=57.73 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=48.5
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHhhc
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~iiTIVV~gde~~ieqL~kQL~K 141 (450)
|.+++.+.|+||.|.+++++|++.|+||.++...... ..+.+.++++.++ ..+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence 6899999999999999999999999999999887753 2456777776443 56666666643
No 72
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.81 E-value=0.00016 Score=52.55 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=55.2
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
|.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.+.++|.++-.|.+|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 2233555554 45678999999999999998875
No 73
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=2.9e-05 Score=63.90 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=55.0
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhcccCEEEE
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~KLidVi~V 385 (450)
++.+++...|+||++++|+++|+.+|.||..+..... .+.-.|.+++.... ..++++.+.|++|-+-..+
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l 72 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV 72 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999988764 34555555555443 4588888888887755443
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00012 Score=57.73 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=49.7
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEe-CChhHHHHHHHHHhcccCE
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDL 382 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidV 382 (450)
|++.+.|+||.|..++.++++.|.||.|+...+.. +.+...+.+.+. .++..++.|.+.|.+-..|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccE
Confidence 68899999999999999999999999999888752 334444444443 2333588888888776444
No 75
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.74 E-value=0.00022 Score=57.59 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=51.1
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEEeCC--hHHHHHHHHHhhcCce
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGT--ERVLRQVVEQLNKLVN 144 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~i--iTIVV~gd--e~~ieqL~kQL~KLiD 144 (450)
..|.+.+.|+||.|.+|..+|+++|+||.++..-|..+. .. +.+-+++. +..++++.+.|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 367788899999999999999999999999998887653 33 44445554 6778888888887433
No 76
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00012 Score=55.54 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=42.3
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g 364 (450)
+.+.+.|+||.|++++++|++.|+||.++...+....+..++.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 678999999999999999999999999998877655678888888875
No 77
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.00019 Score=56.67 Aligned_cols=64 Identities=11% Similarity=0.219 Sum_probs=48.2
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CC--cE--EEEEEeCChHHHHHHHHHhhcCceee
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DK--AL--FTIVVSGTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~--~i--iTIVV~gde~~ieqL~kQL~KLiDVi 146 (450)
+++.+.|+||.|.+++.++++.|.||.|+...+.. +. .. +++.+.. +..++.|.+.|++-.+|.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~~ 70 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTVV 70 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccEE
Confidence 78999999999999999999999999999887652 22 33 4444433 334788888887764443
No 78
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.67 E-value=0.00014 Score=57.97 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=47.4
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC----CcE--EEEEEeCCh-HHHHHHHHHhhcC
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKL 142 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted----~~i--iTIVV~gde-~~ieqL~kQL~KL 142 (450)
|++...|+||.+++|+.+|+++|.||..+.....+. .++ +++.++.++ ..+.++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 789999999999999999999999999999865542 244 566676554 3577777766554
No 79
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.66 E-value=0.0003 Score=55.93 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=51.1
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVN 144 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted-~~i--iTIVV~g--de~~ieqL~kQL~KLiD 144 (450)
+.+.++|+||.|.+|...|+++|+||.+|.--|... ++. +-|-+.+ ++..++++.+.|++..+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~ 69 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTE 69 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 567779999999999999999999999998777665 343 5555666 57789999999988654
No 80
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.00019 Score=55.80 Aligned_cols=59 Identities=31% Similarity=0.454 Sum_probs=45.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhc
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~K 141 (450)
.+++.+.|+||.|.+++.+|+++|+||.++...+....+ .+.+.+++++ .+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence 688999999999999999999999999999887764444 3666666433 2355555544
No 81
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.64 E-value=7.2e-05 Score=61.59 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=55.2
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhcCceeeEEE
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~KLiDVi~V~ 149 (450)
++.+++.-.|+||++++|+++|+++|.||..+..... .+. ++++++.+. ..+++|.+.|++|-+-..++
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 4789999999999999999999999999999997763 333 666777554 46888998888777655444
No 82
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00018 Score=57.18 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=49.2
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhcc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL 379 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~KL 379 (450)
+|++...|+||++++|++.|+.+|.||..+........+.-.|.+.++.+. ..++++.+.|++|
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 478899999999999999999999999999877533445555555555443 2578888777765
No 83
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.57 E-value=0.00045 Score=77.19 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=74.0
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (450)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI 372 (450)
..+++..|+. +.+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.+++.. +.+.+...+.+.+. .+-+.+.+|
T Consensus 610 er~i~v~W~~---~~~~-~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i 684 (702)
T PRK11092 610 EKFMAVEWDK---ETEQ-EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANI 684 (702)
T ss_pred ceeEEeEECC---CCCc-eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHH
Confidence 5789999972 2122 2355899999999999999999999999999999975 44457777777766 577899999
Q ss_pred HHHHhcccCEEEEEec
Q 013068 373 VQLLHKLIDLHEVQDI 388 (450)
Q Consensus 373 ~kQL~KLidVi~V~dl 388 (450)
+.+|.++-+|.+|...
T Consensus 685 ~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 685 MRKIRVMPDVIKVTRN 700 (702)
T ss_pred HHHHhCCCCcceEEEc
Confidence 9999999999999864
No 84
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.54 E-value=0.00034 Score=52.99 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=46.6
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC---CcE--EEEEEeC-ChHHHHHHHHHhhcC
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KAL--FTIVVSG-TERVLRQVVEQLNKL 142 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted---~~i--iTIVV~g-de~~ieqL~kQL~KL 142 (450)
|.+.+.|+||.|.+|+.+++..|.||.++...+..+ .+. +.+.+.. +...++.+++.|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 357889999999999999999999999999876532 332 4444443 346788888888764
No 85
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00024 Score=53.77 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=38.0
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG 127 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~g 127 (450)
+.+.+.|+||.|.+++++|++.|+||.++...+....+ .+.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 68899999999999999999999999999886665333 36666655
No 86
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.0007 Score=53.98 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=48.1
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC------ChhHHHHHHHHHhc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHK 378 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------d~~~ieQI~kQL~K 378 (450)
..+.+...|+||+|.+|+++|++.|+||.+-.+..+.+.-+--.-.+.+. +++..+++.+.|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999887755544444444432 24456667766654
No 87
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00028 Score=56.57 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=50.3
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh-HHHHHHHHHhccc
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-SIGKLVQLLHKLI 380 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~-~ieQI~kQL~KLi 380 (450)
+++.-.|+||++++|+++|+.+|.||..++..... +.-.|.+.+...+. .++++.+.|+++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999755543 55667777776554 6888888887765
No 88
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.48 E-value=0.00072 Score=51.62 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.3
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde 129 (450)
.|.|.+.|+||+|.+++++|+..|+||.++.+....+....++.+.+++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 5789999999999999999999999999999887765434566665443
No 89
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.45 E-value=0.00098 Score=50.88 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=44.9
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh------hHHHHHHHHH
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD------ESIGKLVQLL 376 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~------~~ieQI~kQL 376 (450)
.|.+.+.|+||+|++++++|+..|.||.++.+...++ ....++.+.+.+ +..+++.+-|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~l 66 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEEAL 66 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999877654 555666665433 3444444444
No 90
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.00047 Score=54.79 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=47.8
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhcC
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL 142 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~KL 142 (450)
+|++.-.|+||.+++|++.|+.+|.||..+........+. +.+.++.+. ..++++.+.|+++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3788999999999999999999999999998775334444 555566554 2578888777654
No 91
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.39 E-value=0.0009 Score=45.95 Aligned_cols=57 Identities=30% Similarity=0.425 Sum_probs=44.7
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHh
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL 139 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL 139 (450)
|++...|+||.+.++++.|+++|+||.++........+ .+++.+...+ .++.++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46888999999999999999999999999987765343 3667676544 666666655
No 92
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.38 E-value=0.0011 Score=74.60 Aligned_cols=91 Identities=20% Similarity=0.356 Sum_probs=75.3
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (450)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI 372 (450)
+.+++..|+. ..+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......++..|++++. .+...+.+|
T Consensus 650 eR~I~V~W~~---~~~~-~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l 725 (743)
T PRK10872 650 ERIVDAVWGE---SYSS-GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV 725 (743)
T ss_pred ceEEEeEecC---CCCc-eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence 4689999972 1122 2355899999999999999999999999999999986544468888888876 677899999
Q ss_pred HHHHhcccCEEEEEec
Q 013068 373 VQLLHKLIDLHEVQDI 388 (450)
Q Consensus 373 ~kQL~KLidVi~V~dl 388 (450)
+++|.++.+|.+|...
T Consensus 726 ~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 726 LGKLNQVPDVIDARRL 741 (743)
T ss_pred HHHHhcCCCcCeEEec
Confidence 9999999999999864
No 93
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.36 E-value=0.0011 Score=53.55 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=52.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcC
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KL 142 (450)
...|+++=.|+||++++|++.+++.|.||..+......+.-.+.+.+++++...++|.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 4679999999999999999999999999999998877654446777888888899999988776
No 94
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.00048 Score=55.19 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH-HHHHHHHHhhcCce
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLVN 144 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~-~ieqL~kQL~KLiD 144 (450)
+++.-.|+||.+++|+++|+.+|.||..++.....+.=.+.+.++.++. .++++.+.|+++-+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6888999999999999999999999999975544322125556665553 67888887776543
No 95
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=97.34 E-value=0.0012 Score=73.59 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=73.3
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (450)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI 372 (450)
..+++..|+. +.+. .-..+|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+.+. .+-+.+..|
T Consensus 594 er~I~v~W~~---~~~~-~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i 668 (683)
T TIGR00691 594 EKIIEVEWNA---SKPR-RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI 668 (683)
T ss_pred ccEEEEEecC---CCCc-eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence 5789999972 1122 335699999999999999999999999999999999654 467877777775 577899999
Q ss_pred HHHHhcccCEEEEE
Q 013068 373 VQLLHKLIDLHEVQ 386 (450)
Q Consensus 373 ~kQL~KLidVi~V~ 386 (450)
+.+|.++-+|.+|.
T Consensus 669 i~~L~~i~~V~~v~ 682 (683)
T TIGR00691 669 MLKIKTKNDVIVVK 682 (683)
T ss_pred HHHHhCCCCceEEe
Confidence 99999999999885
No 96
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.33 E-value=0.0017 Score=52.44 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=53.1
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
...|++.-.|+||+++++++.+++.|.||..+...... +.-.+.+.+.++++.++++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG--GRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET--TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc--CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 45889999999999999999999999999999888765 44668888888888999999999886
No 97
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.32 E-value=0.011 Score=67.94 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=50.4
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe------CChhHHHHHHHHHhcccC
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP------GTDESIGKLVQLLHKLID 381 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~------gd~~~ieQI~kQL~KLid 381 (450)
..|.|...|+||+|.+|++.|++.|+||.+..+.. .....--+-.+.+ .+++..++|.+.|.+.++
T Consensus 844 t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999984 4443333333333 234457788888877664
No 98
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.0012 Score=53.04 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=47.9
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEE-e---C----ChhHHHHHHHHHhcc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVV-P---G----TDESIGKLVQLLHKL 379 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV-~---g----d~~~ieQI~kQL~KL 379 (450)
+|.+...|+||+|++|++.|++.|.||.+-.+... + +..--++.| + | +++..+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~-~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-N-GRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-C-CEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999988855 3 444444444 3 2 245577888887764
No 99
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0017 Score=50.23 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=45.5
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC------ChHHHHHHHHHhhc
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK 141 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g------de~~ieqL~kQL~K 141 (450)
.|.|...|+||+|++|+++|+..|+||.++.+....+....++.+.+ +++..++|.+.|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998766543334554432 23455566666644
No 100
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0015 Score=52.25 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=36.7
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV 125 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV 125 (450)
.+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 578999999999999999999999999999887553322345544
No 101
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0016 Score=52.87 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=48.8
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhcc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKL 379 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~KL 379 (450)
+|.|...|+||+|+++++.|++.|+||.+-.+..|.+...--.-.|.+++ ++..+++.+.|.+.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~ 70 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV 70 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999887766555544554532 23455666666543
No 102
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.24 E-value=0.0016 Score=59.67 Aligned_cols=77 Identities=27% Similarity=0.362 Sum_probs=64.1
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee-ecCCCcEEEEEE--eCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg-~ted~~iiTIVV--~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
+-+.++|++.++++.|.|+++..+.++++.||-++.-. |-+...-+||.+ ++-+..++.|+..|+|+-.|.+|+-+.
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 34678999999999999999999999999999998865 333333466654 477889999999999999999998653
No 103
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.18 E-value=0.0019 Score=59.15 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=63.9
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--CChhHHHHHHHHHhcccCEEEEEec
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
+.+||++.++++.|.|+++....++++.||-++.-.-. -.|...+||.++ +-+..++.|+..|.|+..|.+|+-+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv 147 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV 147 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence 56899999999999999999999999999988776532 346677777776 5667899999999999999999854
No 104
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0032 Score=48.59 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=46.0
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC------ChhHHHHHHHHHhcc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKL 379 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------d~~~ieQI~kQL~KL 379 (450)
.|.|...|+||+|++|+++|+..|.||.++.+....+ ..-.++.+.+ +++..++|.+.|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999999876543 4445555532 234556666666543
No 105
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0023 Score=50.99 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=44.8
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe-C------ChHHHHHHHHHhhc
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS-G------TERVLRQVVEQLNK 141 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~-g------de~~ieqL~kQL~K 141 (450)
.+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-. =++.|. . +++..+++.+.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999877744422 223332 1 34456666666654
No 106
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.12 E-value=0.0024 Score=51.42 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe----C----ChHHHHHHHHHhhcC
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL 142 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~----g----de~~ieqL~kQL~KL 142 (450)
.|+|+..|+||.|.+|+++|++.|.||.+-.+....+.-.-++.|. + +++..+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999885522212344332 1 345567777777653
No 107
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.12 E-value=0.00099 Score=60.12 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=49.5
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHH
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~k 374 (450)
|+-..||+++||+||=|..++..+...|+||..++.+.|.+.|+-|| +|+-. +...+..+
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm--vV~~~-d~A~~~Le 60 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM--VVDRP-DEAHSVLE 60 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE--EcCCh-HHHHHHHH
Confidence 44568999999999999999999999999999999999999999887 45533 33444433
No 108
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.0031 Score=50.37 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=37.7
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~ 363 (450)
.+.|.+.|+||+|.+|+++|++.|+||.|..+.+. + +..-.++.+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~-~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-G-DMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-C-CeEEEEEEEE
Confidence 57889999999999999999999999999988755 3 3455555553
No 109
>PRK07431 aspartate kinase; Provisional
Probab=97.07 E-value=0.035 Score=60.58 Aligned_cols=273 Identities=14% Similarity=0.130 Sum_probs=160.4
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheee
Q 013068 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML 163 (450)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaL 163 (450)
-+.++||.++||.+.|.+.|+||+.++.+..+.. .-+.++++.++ ++...+.|+++.+=+.. .+-.+..++++
T Consensus 277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~ 350 (587)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK 350 (587)
T ss_pred cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence 3567899999999999999999999987765432 23666665432 33344444433210000 12235678999
Q ss_pred EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCCCCc
Q 013068 164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTA 238 (450)
Q Consensus 164 IKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~~~~~ 238 (450)
|.|-... .--..++.....++.+|.-++....-|-+.=+.+..+..++.|.+-=.++.- +.. ...
T Consensus 351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~--------~~~--~~~ 420 (587)
T PRK07431 351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELEDS--------QIE--INP 420 (587)
T ss_pred EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhccCCc--------ccc--cCc
Confidence 9887643 2234677777888888887776655666655666677777776542111110 000 000
Q ss_pred ccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCCceEEEEE
Q 013068 239 PFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLS 318 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~htLS 318 (450)
-.|+ ..+.-|-.+.. ...+..-+|.
T Consensus 421 ~~~~----------------------------------~~~~~v~gIa~---------------------~~~~~~i~l~ 445 (587)
T PRK07431 421 TASG----------------------------------QDEPEVRGVAL---------------------DRNQAQLAIR 445 (587)
T ss_pred cccC----------------------------------CCCCcEEEEEc---------------------cCCEEEEEEC
Confidence 0000 00001111111 1112222332
Q ss_pred EEEeccchHHHHHHHHHhccCceeeeeeeeec-CCCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCChhHHH
Q 013068 319 MLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAER 396 (450)
Q Consensus 319 ilVeN~pGVL~RItgLFsRRGyNIeSLtVg~t-e~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~~V~R 396 (450)
.+.++||.++++.+++.++|.||+.++.... +..+.-.++++++.++ ....++.++|.+..+...+ .+++
T Consensus 446 -~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~~ 517 (587)
T PRK07431 446 -NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDGP 517 (587)
T ss_pred -CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEeC
Confidence 4568899999999999999999999987643 3345677888888432 3455666666654443332 2445
Q ss_pred hhheeEeecCcc-ch----HHHHHHHHhcCcEEEEecCCEEEEEE
Q 013068 397 ELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDHTITLEV 436 (450)
Q Consensus 397 EL~LIKV~~~~~-~R----~eI~~i~~iFrakIVDvs~~si~iE~ 436 (450)
.+++|-|--..- ++ ..+++.....+.+|.-++...+.|-+
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~ 562 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSC 562 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEE
Confidence 677777754432 22 36777778888888888766444433
No 110
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.00 E-value=0.0059 Score=49.21 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=55.7
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhcccCEEE
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHE 384 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~ 384 (450)
+|.+.+.|+||.|.++...|+.+|+|+..|.--|... ++-..+-|-++|+++.++++.++|.+...=++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 3556668999999999999999999999999998764 44555666677888889999999988655433
No 111
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0057 Score=54.09 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=58.8
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V 385 (450)
.+.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ++-..+-|=+.|+.+.+.+++++|.+...-++|
T Consensus 40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 3678888889999999999999999999999999999744 444555566778777888999999886654443
No 112
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.96 E-value=0.0028 Score=63.85 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-hhHHHHHHHHHhcccC----EEE
Q 013068 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLID----LHE 384 (450)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-~~~ieQI~kQL~KLid----Vi~ 384 (450)
..|.++.+++...|+||+.++||++|+.+|.||..++.......++-.|.+.+... ...++++...|+++-+ .+.
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~ 82 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFGMQWE 82 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCcEEE
Confidence 46788999999999999999999999999999999999855556666676666522 2236666666655533 344
Q ss_pred EEec
Q 013068 385 VQDI 388 (450)
Q Consensus 385 V~dl 388 (450)
++..
T Consensus 83 i~~~ 86 (286)
T PRK13011 83 LHDP 86 (286)
T ss_pred Eeec
Confidence 5543
No 113
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.95 E-value=0.0029 Score=51.24 Aligned_cols=63 Identities=27% Similarity=0.258 Sum_probs=47.1
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
..|++...|+||+.++|+++++.+|.||..+..-.....-.-||.+.++ ....+++.+.|.++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHH
Confidence 5789999999999999999999999999999888854444545544444 33456666555543
No 114
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.94 E-value=0.027 Score=63.75 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=39.7
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~ 363 (450)
...|.|...|+||+|.+|+++|+..|+||.+..+... ....--.-.|.+
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d 755 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTG 755 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEEC
Confidence 3689999999999999999999999999999999887 434333333444
No 115
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0057 Score=49.74 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=39.9
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~ 363 (450)
|.+.|...|+||++++++|.|++.|+||.+-.+-.+.+.-.--.-.|.+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec
Confidence 6889999999999999999999999999998888776654444333444
No 116
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.88 E-value=0.0059 Score=49.60 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=44.4
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEE-eC-----ChHHHHHHHHHhhc
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV-SG-----TERVLRQVVEQLNK 141 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV-~g-----de~~ieqL~kQL~K 141 (450)
.|.|+..|+||+|.+|++.|++.|+||.+-.+..+.+.-. =++.| +. +++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999987755532 23333 22 22445556555543
No 117
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.87 E-value=0.0033 Score=50.93 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=47.4
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcC
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KL 142 (450)
..|++.-.|+||..++|+++++.+|.||..+......+.-.|.+.++.+....++|.+.|+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence 578899999999999999999999999999998773322236666665544566666655443
No 118
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.86 E-value=0.0045 Score=58.97 Aligned_cols=82 Identities=27% Similarity=0.273 Sum_probs=67.5
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChh
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF 393 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~ 393 (450)
..-||+.++|+||||..++|+.+.+|-||.-...--..+....+|-+-+.|-+ ..+.|...|+.+-.|++|+.+..-+-
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence 35799999999999999999999999999875554444445888988888753 58999999999999999998877655
Q ss_pred HHH
Q 013068 394 AER 396 (450)
Q Consensus 394 V~R 396 (450)
++-
T Consensus 81 iyG 83 (218)
T COG1707 81 IYG 83 (218)
T ss_pred HhC
Confidence 543
No 119
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.85 E-value=0.0084 Score=48.31 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=51.3
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCChHHHHHHHHHhhcCce
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGTERVLRQVVEQLNKLVN 144 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i--iTIVV~gde~~ieqL~kQL~KLiD 144 (450)
.|.+.+.|+||.|.+|...|+.+|+|+..|---|..... . +=|-++|.+..++++.++|.+...
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~ 68 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVA 68 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcC
Confidence 355667899999999999999999999999988876543 2 445566777778999999887654
No 120
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=96.76 E-value=0.0086 Score=67.07 Aligned_cols=89 Identities=18% Similarity=0.377 Sum_probs=74.1
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (450)
Q Consensus 294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI 372 (450)
..+++..|+.-. ++.-...|.|...|++|+|+.|+.++++-+.||.+++.... +.++.-|.+.+. .+-..+.+|
T Consensus 611 er~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i 685 (701)
T COG0317 611 ERVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRV 685 (701)
T ss_pred ceEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHH
Confidence 368999998332 33446899999999999999999999999999999999887 666666666554 477789999
Q ss_pred HHHHhcccCEEEEEe
Q 013068 373 VQLLHKLIDLHEVQD 387 (450)
Q Consensus 373 ~kQL~KLidVi~V~d 387 (450)
+.||..+-+|..|..
T Consensus 686 ~~~l~~~~~V~~v~R 700 (701)
T COG0317 686 LARLKQLPDVISVRR 700 (701)
T ss_pred HHHHhcCCCeEEEEe
Confidence 999999999999864
No 121
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.72 E-value=0.06 Score=61.35 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=49.0
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-C---ChhHHHHHHHHHhc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHK 378 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---d~~~ieQI~kQL~K 378 (450)
...+.|...|+||+|.+|+.+|+.+|+||.+..+........--+.+... | +++..+.|.++|.+
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~ 847 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA 847 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999766444444444321 1 33556777776654
No 122
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.67 E-value=0.0063 Score=57.97 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=64.2
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchh
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted--~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~ 156 (450)
..-||+.++|+||+|..++|+.+.+|-||.-.......+ .+.+-+-+.|-+ ..+.|...|+..-.|+.|+.+..-+.
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence 457999999999999999999999999998766544333 345666677644 67889999999999999998887555
Q ss_pred hhhh
Q 013068 157 VERE 160 (450)
Q Consensus 157 V~RE 160 (450)
++--
T Consensus 81 iyGK 84 (218)
T COG1707 81 IYGK 84 (218)
T ss_pred HhCc
Confidence 5543
No 123
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.01 Score=48.28 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=39.1
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS 126 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~ 126 (450)
+.|.|+..|+||++++++|+|++.|+||.+-.+-.+.+.-. =++.|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence 68999999999999999999999999999999887755433 344443
No 124
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.65 E-value=0.011 Score=50.13 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=52.5
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC-CeeEEEEEEeCC-hhHHHHHHHHHhcc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGT-DESIGKLVQLLHKL 379 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~-~iSRiTIVV~gd-~~~ieQI~kQL~KL 379 (450)
+-+|...+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=++|. +..+.++.+.|.+-
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~ 81 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND 81 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHH
Confidence 4677777899999999999999999999999999997543 444555556674 66788888888763
No 125
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.64 E-value=0.0051 Score=62.00 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=52.8
Q ss_pred ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEE--EEEEeCC-hHHHHHHHHHhhcCce
Q 013068 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSGT-ERVLRQVVEQLNKLVN 144 (450)
Q Consensus 75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~ii--TIVV~gd-e~~ieqL~kQL~KLiD 144 (450)
.+|.++.+++.-.|+||+.++||++|+.+|.||+.++.......+.| ++.++.+ ....++|...|+++-+
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA 75 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999754455554 4444422 2346677766655543
No 126
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.013 Score=48.17 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=46.8
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC------ChhHHHHHHHHHh
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLH 377 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------d~~~ieQI~kQL~ 377 (450)
.+|.|...|+||+|.+|+..|++-|.+|.+-.++.-.. ..--.-.|.+. |++.++.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ge-rv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGG-WFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCC-eEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999988876544 44444444442 3456777777764
No 127
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.58 E-value=0.0037 Score=65.62 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=59.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
-.++|.+.=+|+||++++|+.++++.|+||..+.+....+.+++.|-+++ ..-+.++++|+++-+|++|..+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 45899999999999999999999999999999999766644556666654 3456788999999999988754
No 128
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.56 E-value=0.08 Score=61.02 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=50.0
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--C----ChhHHHHHHHHHhccc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKLI 380 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----d~~~ieQI~kQL~KLi 380 (450)
..|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+--.-.|.+ | +++..++|.+.|.+.+
T Consensus 815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999887 544444444444 2 2345677777777654
No 129
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.53 E-value=0.0059 Score=61.40 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=52.4
Q ss_pred CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHHHHHHHhccc
Q 013068 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLI 380 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQI~kQL~KLi 380 (450)
.|+++.+++...|+||+++.|+++++.+|.||..++.......+.-.|.+.++. ....++++...|++|-
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999887434455555555554 1233556665555544
No 130
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.52 E-value=0.042 Score=62.93 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=51.0
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC----ChhHHHHHHHHHhcccCE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDL 382 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----d~~~ieQI~kQL~KLidV 382 (450)
..|.|...|+||+|.+|+++|++.|+||.+-.+... +..+-- ++.|.+ +++..++|.+.|.+.++|
T Consensus 787 T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~D-vF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVED-TFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred EEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEE-EEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999888877 333333 333332 345678888888876665
No 131
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.48 E-value=0.09 Score=60.51 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=48.8
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-----ChhHHHHHHHHHhccc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLI 380 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-----d~~~ieQI~kQL~KLi 380 (450)
...|.|...|+||+|.+|+.+|.+-|+||.+--+..- ...+--+-.|.+. +++..+.|.++|..-+
T Consensus 808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~-gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTI-GERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEecc-CceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999888764 4444444444442 2445667777665544
No 132
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.48 E-value=0.012 Score=56.27 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred c-eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccC---E-EEEE
Q 013068 312 L-RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID---L-HEVQ 386 (450)
Q Consensus 312 ~-~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLid---V-i~V~ 386 (450)
| +...|++.-.||||++++|+++++..|.||...+...... .--|.+.+.+....+.++...|.++.. + +.++
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~ 82 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMK 82 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEE
Confidence 5 4568999999999999999999999999999988776543 455677778887888888888877763 3 2333
Q ss_pred ecCCChhHHHhhh-eeEeecCccchH----HHHHHHHhcCcEEEEecCCE
Q 013068 387 DITHLPFAERELI-LIKIAVNTAARR----DVLDIAKIFRARAVDVSDHT 431 (450)
Q Consensus 387 dlt~~~~V~REL~-LIKV~~~~~~R~----eI~~i~~iFrakIVDvs~~s 431 (450)
...... ..+.. .+.|.+.+..|+ ++-+....++.+|.+.+.++
T Consensus 83 ~~~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~ 130 (190)
T PRK11589 83 RTTARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT 130 (190)
T ss_pred eccccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee
Confidence 432211 23333 366766666664 55555556677777775553
No 133
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.017 Score=47.40 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=45.9
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEE-eC----ChHHHHHHHHHhh
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-SG----TERVLRQVVEQLN 140 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV-~g----de~~ieqL~kQL~ 140 (450)
..|.|...|+||+|.+|+.+|++-|++|.+-.++.-.+.-. |-+.- +| +++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999988876655433 43332 22 3456677777663
No 134
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.36 E-value=0.0082 Score=63.08 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=60.0
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
-.|+|.+.=+|+||++++|+.++++.|+||.++.+.... +..-|+|-+++ ..-+.++++|+++.+|++|.-|
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 358999999999999999999999999999999995554 66666666665 3466899999999999998754
No 135
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.35 E-value=0.026 Score=49.97 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=55.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHhhcCceeeE
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIK 147 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gde~~ieqL~kQL~KLiDVi~ 147 (450)
.+..|.+.+.|+||.|.+|...|+.+|+|+.+|---|..... + +=|-+.|....+++++++|.+...-++
T Consensus 40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~k 112 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVR 112 (115)
T ss_pred ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeE
Confidence 467888888999999999999999999999999988875443 2 445566666678888888877655333
No 136
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.34 E-value=0.0087 Score=60.24 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=51.1
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVN 144 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~g--de~~ieqL~kQL~KLiD 144 (450)
.|+++.|++.-.|+||..+.|+++|+.+|.||+.++.......+. |++.++. ....++.|...|+++-+
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE 75 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999887333344 4444544 12346666666655543
No 137
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.24 E-value=0.022 Score=48.32 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=50.2
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHhhc
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK 141 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gd-e~~ieqL~kQL~K 141 (450)
..+..|.+.+.|+||.|.++...|+.+|+|+.+|---|..... + |=|-++|. +..++++.+.|.+
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 3346777788999999999999999999999999998876543 2 34445554 6677777777766
No 138
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.18 E-value=0.013 Score=56.22 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=49.7
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHH
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGK 371 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQ 371 (450)
|+|-+.=+|+||++.+|+.++.+.|+||.++.++..+..+-.=|.|-+++ +++.+++
T Consensus 149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 77888889999999999999999999999999999988888888888885 4555554
No 139
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.023 Score=47.06 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=46.0
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeee--ecCCCCeeEEEEEEeC----ChhHHHHHHHHHhc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVPG----TDESIGKLVQLLHK 378 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg--~te~~~iSRiTIVV~g----d~~~ieQI~kQL~K 378 (450)
+|.|...|+||+|.+|+..|.+-|++|.+--++ .-...-+.-+-+..+| |++..+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999998887 4444344444443334 34556677766654
No 140
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.04 E-value=0.012 Score=63.57 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=59.7
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
..++|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-.+++.-|+..-+.+.++|.++.+|.+|..+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence 44677777799999999999999999999999999987766553344444555567788899999999988765
No 141
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=96.01 E-value=0.029 Score=57.64 Aligned_cols=67 Identities=15% Similarity=0.312 Sum_probs=56.0
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee---ecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcc
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg---~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KL 379 (450)
+.++|++.+.|+||.|.+++.+++..|.||.++... +....+...+++.++. +.+.+++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 457999999999999999999999999999999776 3334577888888875 466788999888764
No 142
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.99 E-value=0.032 Score=62.73 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=59.0
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE----EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i----iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.-.|.|.+.|++|+|+.|+.+++..+.||.++++.... .+. |+|.|. +-..+++|+.+|.++-+|.+|.-.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~ieV~-~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD-GRVYSAFIRLTAR-DRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC-CCEEEEEEEEEEC-CHHHHHHHHHHHhCCCCcceEEEc
Confidence 34899999999999999999999999999999975433 332 444454 567999999999999999999764
No 143
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.97 E-value=0.044 Score=44.82 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=49.8
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
|.+.+.|+||.|.++...|..+|+|+..|.--|... +.-..+-|-++|+...+.++.+.|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 445568999999999999999999999999998754 34455556677887778888887765
No 144
>PRK07334 threonine dehydratase; Provisional
Probab=95.97 E-value=0.042 Score=57.30 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=57.7
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEe-CChhHHHHHHHHHhcccC
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKLID 381 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gd~~~ieQI~kQL~KLid 381 (450)
...|.|.+.|+||+|++|+.+++.-+.||.+++..... ..+..+|.+++. .+.+.+++++++|++.=.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~ 397 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGF 397 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46999999999999999999999999999999986431 357888887776 577899999999998633
No 145
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.88 E-value=0.037 Score=43.54 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=50.4
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhc
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHK 378 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~K 378 (450)
+++.+.++||-|.++..+++. |.||..+.-.... .+..++.+.+.. +.+.++++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999887655 667778888773 45789999999876
No 146
>PRK07431 aspartate kinase; Provisional
Probab=95.83 E-value=0.39 Score=52.56 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=40.1
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi 380 (450)
.++||++.|+...+++.|+|+..++. .=-+++++|+. +..++.++.|++-.
T Consensus 530 ~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~~--~~~~~av~~Lh~~f 580 (587)
T PRK07431 530 PGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVAE--DDGVKALQAVHQAF 580 (587)
T ss_pred cCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEeH--HHHHHHHHHHHHHh
Confidence 48999999999999999999988882 22356777764 45788888887765
No 147
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.80 E-value=0.037 Score=45.81 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeee--ecCCCc--EEEEEEeC----ChHHHHHHHHHhhc
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKA--LFTIVVSG----TERVLRQVVEQLNK 141 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg--~ted~~--iiTIVV~g----de~~ieqL~kQL~K 141 (450)
.|.|...|+||.|.+|+..|.+-|++|.+--++ .-.+.. .|-+..+| +++..+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999998887 333332 25553333 34556666666543
No 148
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.77 E-value=0.1 Score=52.95 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=42.6
Q ss_pred CCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee--ecCCCCeeEEEEE
Q 013068 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTV 361 (450)
Q Consensus 309 ~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg--~te~~~iSRiTIV 361 (450)
.+.|.+++|++.-.|+||+.++||++++..|.||..++.- .....-+.|+.++
T Consensus 4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 4558888999999999999999999999999999999886 2222334455555
No 149
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.72 E-value=0.048 Score=61.73 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=59.1
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEEec
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+. +++++. .+-..+.+|+.+|.++-+|.+|.-.
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 38899999999999999999999999999999854432332 444443 4677999999999999999999764
No 150
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=95.71 E-value=0.031 Score=52.69 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=60.4
Q ss_pred EEEEEEEE--eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEE
Q 013068 314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 314 ~htLSilV--eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~ 386 (450)
.+.|.+.. .+.||+|+.|+++.+.||++|..+-....|-.+-+++||++++- .-..++.||.|+--|.+|.
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~--iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERP--IPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEecc--CCHHHHHHHhcccCceeEE
Confidence 36677776 56899999999999999999999888877777889999999853 4567889999999998886
No 151
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.70 E-value=0.025 Score=61.25 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=61.1
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
.|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+..=|.|-+++ ..-+.+.++|.++.+|.+|..+
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~--~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD--PVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC--CCCHHHHHHHhcCCCcceEEEE
Confidence 378877779999999999999999999999999999877776666665654 3457888889999999988765
No 152
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.70 E-value=0.06 Score=44.04 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=47.4
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHhhc
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gde~~ieqL~kQL~K 141 (450)
+.+.+.|+||.|.++...|..+|+|+..|---|..... + +=|-+.|....++++.+.|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 45566899999999999999999999999988866543 2 455566777677777777765
No 153
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.68 E-value=0.047 Score=61.16 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=57.9
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
.-.|.|.+.|++|+|+.|+.+++.-+.||.++++.... .+. +.+.+. .+-..+..|+.+|.++-+|.+|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 34899999999999999999999999999999986543 233 444333 46779999999999999999885
No 154
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.63 E-value=0.047 Score=45.21 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=47.7
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEE-EeC----ChHHHHHHHHHhhcC
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL 142 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIV-V~g----de~~ieqL~kQL~KL 142 (450)
.+.|...|+||.|.+|+..|++.|++|.+-.++...+... |-|. .+| ++...+.|.+.|...
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999887665543 4442 223 566677777777543
No 155
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.61 E-value=0.029 Score=53.91 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=45.7
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC--ChHHHHH
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ 134 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~g--de~~ieq 134 (450)
..|.|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+ +|.|.+++ +++.+++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 347888888999999999999999999999999999877555 46677764 3444443
No 156
>PRK11899 prephenate dehydratase; Provisional
Probab=95.60 E-value=0.069 Score=53.90 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=56.4
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEE
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE 384 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~ 384 (450)
+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+. .++-..+-|-+.| ++..+.+..++|.++-.-++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~k 267 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVR 267 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEE
Confidence 55677777999999999999999999999999999985 4566676677777 45568888888877554333
No 157
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.51 E-value=0.33 Score=55.97 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--C---ChhHHHHHHHHHhccc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHKLI 380 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g---d~~~ieQI~kQL~KLi 380 (450)
.+|.|...|+||+|.+|++.|+..|.||.+--+... +..+--.-.|.+ | ++...++|.++|.+.+
T Consensus 797 t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999988888 433333333333 2 1223366777666544
No 158
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.50 E-value=0.016 Score=55.05 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=52.4
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCC----eeEEEEE--EeCChhHHHHHHHHHhcccCEEEE
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG----LSCITTV--VPGTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~----iSRiTIV--V~gd~~~ieQI~kQL~KLidVi~V 385 (450)
.|.+.+-++||||+++++|.+|.++|+||++|..-..-.++ +-.+.|. ++.+ -.+.+|..+++.|-|=+.|
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISALRDAFEALCDELNV 168 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999999999999999987544443 2233333 3433 3578888888776554444
No 159
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.43 E-value=0.019 Score=54.54 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=51.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc----EE----EEEEeCChHHHHHHHHHhhcCceeeEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----LF----TIVVSGTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~----ii----TIVV~gde~~ieqL~kQL~KLiDVi~V 148 (450)
-.-+.+.+-+.|+||.+++++.+|.++|+||++|.+-....++ .+ ++-+.. -..+.+|..+++.|-|=+.|
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNV 168 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999999999999999987544443 23 333322 23566777777666554444
Q ss_pred E
Q 013068 149 E 149 (450)
Q Consensus 149 ~ 149 (450)
+
T Consensus 169 ~ 169 (176)
T COG2716 169 D 169 (176)
T ss_pred e
Confidence 3
No 160
>PRK06635 aspartate kinase; Reviewed
Probab=95.40 E-value=0.14 Score=53.08 Aligned_cols=120 Identities=20% Similarity=0.255 Sum_probs=81.8
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeCChHHHHHHHHHhhcC---ceeeEEEecCCchhhhhhe
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDISNEPHVEREL 161 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted-~~iiTIVV~gde~~ieqL~kQL~KL---iDVi~V~dlt~~~~V~REL 161 (450)
..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++.+ ..+...+.|+++ ..+..+. +.+.+
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~--~~~~a~~~L~~~~~~~~~~~i~-------~~~~i 340 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD--DLEKALELLEEVKDEIGAESVT-------YDDDI 340 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH--HHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence 67999999999999999999999998876654 34477777643 344455555553 2232232 55678
Q ss_pred eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 162 aLIKV~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
+++.|... +..-.++++....++..|.-++....-+-++=+.+..+..++.|.
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh 398 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH 398 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence 88888532 233457888888888889877544444545555566666677664
No 161
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.35 E-value=0.076 Score=43.96 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=48.1
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--C----ChhHHHHHHHHHhcc
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKL 379 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----d~~~ieQI~kQL~KL 379 (450)
.+.|...|+||+|.+|+..|++-||+|.+-.++...+ ...-.-.+.+ | ++...+.|.+.|...
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ge-ra~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGD-DAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCc-eEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999988887544 3444434433 3 555677777777654
No 162
>PRK06382 threonine dehydratase; Provisional
Probab=95.25 E-value=0.066 Score=55.99 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=54.3
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee----ecCCCCeeEEEEEEeCC-hhHHHHHHHHHhcc
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG----PAEKEGLSCITTVVPGT-DESIGKLVQLLHKL 379 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg----~te~~~iSRiTIVV~gd-~~~ieQI~kQL~KL 379 (450)
+...|.+.+.|+||.|.+++.+|...|.||.++... +. .++...+++.++.. .+..++|.+.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999876 33 45677899988864 35567899988764
No 163
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.16 E-value=0.031 Score=60.48 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=57.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.-|+|-+.-.|+||++.+|+.++++.++||.++.++..+..+.-.+++.-|+..-+.+.++|.++.+|.+|..+
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEE
Confidence 34677777789999999999999999999999999987766543333333444557778888888888888754
No 164
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.10 E-value=0.056 Score=54.47 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=48.2
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK 378 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~K 378 (450)
++|++...|+||+.++||++++.+|.||..++.--....+.--|.+.++.+. ...+++...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3789999999999999999999999999999888765556555666666432 245555554444
No 165
>PRK08198 threonine dehydratase; Provisional
Probab=95.08 E-value=0.11 Score=53.94 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=56.9
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEeC-ChhHHHHHHHHHhcc
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~g-d~~~ieQI~kQL~KL 379 (450)
+..+|++.+.|+||.|.++..+++..|.||.+++..+.. ..+...++++++. +.+.+++|.+.|++.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999987632 3578889999884 456788999998765
No 166
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.00 E-value=0.079 Score=43.12 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=45.9
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHHhcccCE
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDL 382 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL~KLidV 382 (450)
..+.||++.+|.+.|++.|.|++-++.++ ..++++++.++ +.+++|.+.|+++=+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 45789999999999999999999996522 77999998664 3789999999985444
No 167
>PRK07334 threonine dehydratase; Provisional
Probab=94.97 E-value=0.1 Score=54.50 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=51.3
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC---CCc--EEEEEEe-CChHHHHHHHHHhhcC
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL 142 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te---d~~--iiTIVV~-gde~~ieqL~kQL~KL 142 (450)
...|.|.+.|+||+|++|+.+++..+.||.+++..... ..+ .+.+++. .+.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 36899999999999999999999999999999986431 223 2444444 4677899999999875
No 168
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=94.91 E-value=0.11 Score=53.36 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=50.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee---ecCCCc--EEEEEEeC-ChHHHHHHHHHhhcC
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL 142 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg---~ted~~--iiTIVV~g-de~~ieqL~kQL~KL 142 (450)
+.++|++.+.|+||.|.+++.++++.|.||.++... .....+ .+++.++. +.+..++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 456999999999999999999999999999999765 221223 36666653 456778888888653
No 169
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.89 E-value=0.075 Score=54.55 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=52.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHhhcCce
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVN 144 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~iiTIVV~gde~~ieqL~kQL~KLiD 144 (450)
.-|.+.|.+.|+||.|.+|++++.+.|+||+.|-+-++.+. |.++|.+.. ++..++..+.|++-..
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWT 356 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCc
Confidence 45899999999999999999999999999999999776544 468888874 4455666666655443
No 170
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.83 E-value=0.071 Score=53.75 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=47.4
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhc
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~K 141 (450)
++|++.=.|+||..++||++++.+|.||..++.....+.+. |++.++.++ ...++|...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 36889999999999999999999999999999887655666 555666443 235566655544
No 171
>PRK11899 prephenate dehydratase; Provisional
Probab=94.76 E-value=0.13 Score=51.99 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=51.4
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~g--de~~ieqL~kQL~KLiD 144 (450)
+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+... + + |=|-+.| ++..+++..+.|++.-.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~ 264 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE 264 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 5667777899999999999999999999999999887654 3 2 4454555 45667777777776554
No 172
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.74 E-value=0.63 Score=43.96 Aligned_cols=136 Identities=22% Similarity=0.228 Sum_probs=96.8
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC-hhHHHHHHHHHhcc-cCEEEEEec
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKL-IDLHEVQDI 388 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-~~~ieQI~kQL~KL-idVi~V~dl 388 (450)
+|+.+|.|-.+|+||=|-++..=.+.-|-||-|+.=..... .+--+.-|++.+| ++...++.+-+++. +.++++...
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~ 82 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA 82 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence 47889999999999999999999999999998877665443 5677788888887 55667777777332 333443222
Q ss_pred CCChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEec----------CCEEEEEEcCCchhhhhhhhc
Q 013068 389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS----------DHTITLEVNPINNICFFFDSL 449 (450)
Q Consensus 389 t~~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs----------~~si~iE~TG~~ek~~~~~~L 449 (450)
..-..-...||-=-+...-+.-|-.+-.+-.|.++|++ .--++++..|.....++++.|
T Consensus 83 --~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l 151 (170)
T COG2061 83 --RLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRL 151 (170)
T ss_pred --CcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHH
Confidence 22233344566544555667778888889999999984 235788888887755555543
No 173
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.68 E-value=0.16 Score=40.01 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=45.2
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHhhc
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNK 141 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~-gde~~ieqL~kQL~K 141 (450)
+++.+.++||.|.+++.+++. |.||-.+.-.... +.+.+.+++. .+.+.++++..+|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 468889999999999999999 9999999876543 2234555554 234688888888865
No 174
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.60 E-value=0.069 Score=57.88 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=59.9
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
|+|-+.-.|+||++.+|+.+++..++||.++.++..+..+..=|.|-+++ ..-+.+.++|.++.+|.+|..+
T Consensus 452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~--~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ--PVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC--CCCHHHHHHHhcCCCccEEEEE
Confidence 77877778999999999999999999999999999887777666666664 3457788888888888888765
No 175
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.48 E-value=0.57 Score=47.58 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=36.5
Q ss_pred ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee
Q 013068 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG 113 (450)
Q Consensus 75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg 113 (450)
++|.+++|++.=.|+||+.++||++++..|.||..++..
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 467788999999999999999999999999999999986
No 176
>PRK06382 threonine dehydratase; Provisional
Probab=94.46 E-value=0.14 Score=53.50 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=49.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee----ecCC-CcEEEEEEeCC-hHHHHHHHHHhhc
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVD-KALFTIVVSGT-ERVLRQVVEQLNK 141 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg----~ted-~~iiTIVV~gd-e~~ieqL~kQL~K 141 (450)
++..|.|.+.|+||.|.+++.+|...|.||.++... +.+. ...+++.++.. .+..++|.+.|++
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999875 3322 22467777643 3455688888865
No 177
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.39 E-value=0.17 Score=41.17 Aligned_cols=57 Identities=16% Similarity=0.346 Sum_probs=44.4
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHhhcCceee
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde-----~~ieqL~kQL~KLiDVi 146 (450)
..+.||++.+|.+.|++.|+|++-++.+. .-+.+++..++ +.+++|.+.|+++-+|.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v~ 72 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRVK 72 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEEE
Confidence 46789999999999999999999997522 34777776543 37889999999855443
No 178
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=94.37 E-value=0.17 Score=40.61 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=44.3
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHHhc
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHK 378 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL~K 378 (450)
..+.||++.|+...+++.|+|++.++.++ .+++++++.++ +.+..|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 46789999999999999999999986422 77999998655 478899999999
No 179
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.32 E-value=1.3 Score=41.83 Aligned_cols=137 Identities=22% Similarity=0.261 Sum_probs=93.2
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCC-hHHHHHHHHHhhc-CceeeEEEe
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNK-LVNVIKVED 150 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i--iTIVV~gd-e~~ieqL~kQL~K-LiDVi~V~d 150 (450)
.+|+.++.|-.+|+||=|-++..=++.-|-||-++.=...+..+ + +.|++.+| +.....+.+-+++ =+.++++..
T Consensus 2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg 81 (170)
T COG2061 2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG 81 (170)
T ss_pred cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence 46899999999999999999999999999999988766554422 3 77788777 5556666666632 244444432
Q ss_pred cCCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 013068 151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 151 lt~~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs--------~~s--l~iEvTG~~~KIdafi~~L~~ 215 (450)
.. ...+-...||-=-+...-+.-|-.+-.+=+|.|||++ +.+ ++|+..| .+|++..++.|+.
T Consensus 82 ~~--~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e 153 (170)
T COG2061 82 AR--LREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE 153 (170)
T ss_pred cC--cceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence 22 1222334555444455567778888888899999984 233 4555544 5777777777664
No 180
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.31 E-value=0.12 Score=53.13 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=49.2
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC--CCeeEEEEEEeCChhHHHHHHHHHhcccC
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EGLSCITTVVPGTDESIGKLVQLLHKLID 381 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~--~~iSRiTIVV~gd~~~ieQI~kQL~KLid 381 (450)
-|.|.+.+.|+||.|.+++.++.+.|+||+.|.+-++.. .++-|+++--. +..++..+.|.+-..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNE---EDRERAKALLEEFWT 356 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCH---HHHHHHHHHHHhcCc
Confidence 489999999999999999999999999999999987643 35655555433 445555555555433
No 181
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.29 E-value=0.11 Score=39.68 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=39.2
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
+.|+||++.++...+++.|.||+.+..+..+.. -.+++++++.+ ..+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~~--d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPKS--DLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecHH--HHHHHHHHHHH
Confidence 478999999999999999999998876654332 34577777643 34444444444
No 182
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.27 E-value=0.22 Score=41.00 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=57.3
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-C-hhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITHLP 392 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-~~~ieQI~kQL~KLidVi~V~dlt~~~ 392 (450)
.++.+.+.++||-|.+++.+++ |-||..+.-..... +..++.+++.. + .+.++++.+.|++.= .++.++++.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~ 76 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE 76 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence 4688999999999999999999 77888766655443 66778887774 3 478999999998754 2556677665
Q ss_pred hHH
Q 013068 393 FAE 395 (450)
Q Consensus 393 ~V~ 395 (450)
...
T Consensus 77 ~~~ 79 (85)
T cd04906 77 LAK 79 (85)
T ss_pred HHH
Confidence 543
No 183
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.27 E-value=0.22 Score=56.15 Aligned_cols=73 Identities=27% Similarity=0.334 Sum_probs=60.9
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeec-CCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN-VDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~t-ed~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.-...|.|...|++|+|+.|+.++++-+.||.+++.... .+... |+|.|. +-..+..|+.+|..+-+|..|..
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence 446789999999999999999999999999999998876 22222 555554 67799999999999999999864
No 184
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.18 E-value=0.056 Score=44.93 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=49.2
Q ss_pred EEEEEec-cchHHHHHHHHHhccCceeeeeeeee-------cCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068 317 LSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGP-------AEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (450)
Q Consensus 317 LSilVeN-~pGVL~RItgLFsRRGyNIeSLtVg~-------te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi 380 (450)
++++-.+ ++|.+++|+.+++.+|.||+.|.-=. ...+...-|.+.+.+.+...+.+.++|.++-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 6778888 99999999999999999999887621 1122455677778887777888888887653
No 185
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.02 E-value=0.05 Score=45.20 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=47.8
Q ss_pred EEEEEcC-chhHHHHHHHHHhccCceeeeEeeeecCC---------Cc-EEEEEEeCChHHHHHHHHHhhcCce
Q 013068 82 ISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLVN 144 (450)
Q Consensus 82 ISVlVeN-~pGVL~RIagLFsRRGyNIeSLsvg~ted---------~~-iiTIVV~gde~~ieqL~kQL~KLiD 144 (450)
++++-.+ ++|.+++|+.+++.+|+||+.+.-- +.. +- .|.+.+++++...+.|.++|.++-.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~ 74 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS 74 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6788888 9999999999999999999988762 111 22 3677788877778888888766543
No 186
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.86 E-value=0.14 Score=41.66 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=44.0
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh----HHH-HHHHHHhcccCE
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE----SIG-KLVQLLHKLIDL 382 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~----~ie-QI~kQL~KLidV 382 (450)
+.+.||++.+|...|++.|+||+-++.++ ..++++++.++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 56889999999999999999999997522 669999987653 244 688888885444
No 187
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.82 E-value=0.33 Score=49.39 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=59.1
Q ss_pred CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEE
Q 013068 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V 385 (450)
+..+.+|.+.+.|+||.|.++.+.|+.||+|+..|..-|+.. ++-..+-|=+.| ++..+.+..+-|.++-..+++
T Consensus 191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 445788999999999999999999999999999999999874 566666666665 444577777777766665554
No 188
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.76 E-value=0.27 Score=50.01 Aligned_cols=72 Identities=19% Similarity=0.384 Sum_probs=55.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEE--EEeCChHHHHHHHHHhhcCceeeEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTI--VVSGTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTI--VV~gde~~ieqL~kQL~KLiDVi~V 148 (450)
..+..|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . |-| .-+.++..+++..+-|.+.-..+++
T Consensus 192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 357788899999999999999999999999999998887744 3 2 444 3445566677777777776665544
No 189
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.73 E-value=0.24 Score=36.01 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=33.6
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeC
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSG 127 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~g 127 (450)
+.|.||++.++.+.|.+.|+||+.++.+...+. ..++++++.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 578999999999999999999999988764432 236777753
No 190
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.72 E-value=0.62 Score=48.26 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=88.3
Q ss_pred EEEEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068 79 RHTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (450)
Q Consensus 79 ~~tISVl---VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~ 155 (450)
...+++. +.|+||++.|+...|.+.|+||+.++.+.++ .-++++++. +..+++.+.|++...-.... .=
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~i 331 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLD----RV 331 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----eE
Confidence 3467777 8899999999999999999999999876543 337777753 23555555555543111111 11
Q ss_pred hhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 156 HVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 156 ~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.+.+.+++|-|-... .--..+++.....+.+|.-++.....+-+.=+.+..+..++.|.+
T Consensus 332 ~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~ 396 (401)
T TIGR00656 332 EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE 396 (401)
T ss_pred EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence 266788888886542 223478888888888998887766666666666777777777754
No 191
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=93.70 E-value=0.35 Score=52.27 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCe--eEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGL--SCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 308 ~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~i--SRiTIVV~gd~~~ieQI~kQL~KLidVi~V 385 (450)
+..+..+-+|.+.+.|+||.|.++..+|..+|+|+..|.--|+....- ..+-|-+.|+...+.++++.|.+..+.+.|
T Consensus 25 ~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~ 104 (464)
T TIGR01270 25 EEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEV 104 (464)
T ss_pred cCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhccccee
Confidence 445555667777779999999999999999999999999988755432 355566678888899999999998887666
Q ss_pred E
Q 013068 386 Q 386 (450)
Q Consensus 386 ~ 386 (450)
.
T Consensus 105 ~ 105 (464)
T TIGR01270 105 S 105 (464)
T ss_pred c
Confidence 4
No 192
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.64 E-value=0.12 Score=53.99 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.6
Q ss_pred EEEEEEEEe-ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068 314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (450)
Q Consensus 314 ~htLSilVe-N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (450)
.|.|.+.+. |+||+|.+|+++|+++|+||.+|....+....+- +-|-+.+.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~ 346 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG 346 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence 488999995 9999999999999999999999999554443333 66666643
No 193
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.42 E-value=0.29 Score=35.63 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=39.6
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL 376 (450)
+.|.||++.++...+.+.|.||+.++.++... +.-.++++++. +..++..+.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~~--~~~~~~~~~l 60 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVPK--SDLEKALAIL 60 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEeH--HHHHHHHHHh
Confidence 47899999999999999999999998876543 33557777763 3345544443
No 194
>PRK08198 threonine dehydratase; Provisional
Probab=93.33 E-value=0.4 Score=49.85 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=51.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC---CCcE--EEEEEeC-ChHHHHHHHHHhhcC
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKAL--FTIVVSG-TERVLRQVVEQLNKL 142 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te---d~~i--iTIVV~g-de~~ieqL~kQL~KL 142 (450)
-...++++.+.|+||.|.++..+++..|.||.+++-.+.. ..+. ++++++. +.+.+++|.+.|++.
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3456999999999999999999999999999999987532 1232 6666553 445788888888664
No 195
>PRK12483 threonine dehydratase; Reviewed
Probab=93.32 E-value=2.2 Score=46.86 Aligned_cols=132 Identities=13% Similarity=0.197 Sum_probs=91.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEE--EeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIV--V~gde~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
+++.+++...++||.|.+++.+++.+ ||..+.--..... ..+.+. +.+.+...++|++.|++.= .++.++++.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn 419 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD 419 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence 57899999999999999999999988 9998876542222 234444 4444444489999997643 467788887
Q ss_pred hhh---------------hhheeeEEEeCCCCCHHHHHHHHHhcCcE--EEEec-----CCE----EEEEEeCChhHHHH
Q 013068 155 PHV---------------ERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDIS-----EHA----LTIEVTGDPGKMVA 208 (450)
Q Consensus 155 ~~V---------------~RELaLIKV~~~~~~r~eI~~l~~~frAk--IVDvs-----~~s----l~iEvTG~~~KIda 208 (450)
+.. .|| +|+.|..+ ++....++.++.++.+ |-..+ .+. +=|++. .++.+.
T Consensus 420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~ 495 (521)
T PRK12483 420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA 495 (521)
T ss_pred HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence 653 454 46777765 6777888888888862 32211 111 336763 377789
Q ss_pred HHHHhccCC
Q 013068 209 VQRNLSKFG 217 (450)
Q Consensus 209 fi~~L~~fG 217 (450)
|++.|+..|
T Consensus 496 ~~~~l~~~g 504 (521)
T PRK12483 496 LDAALAALG 504 (521)
T ss_pred HHHHHHHCC
Confidence 999998766
No 196
>PRK11898 prephenate dehydratase; Provisional
Probab=93.23 E-value=0.48 Score=47.76 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=49.1
Q ss_pred EEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEe--CChHHHHHHHHHhhcCce
Q 013068 79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVS--GTERVLRQVVEQLNKLVN 144 (450)
Q Consensus 79 ~~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~ted~--~i-iTIVV~--gde~~ieqL~kQL~KLiD 144 (450)
+-.|.+.+.|+ ||.|.++.+.|+++|+|+..|---|.... .+ |=+-++ .++..++++.+.|++...
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 55666777665 99999999999999999999998886543 22 333334 444478888888887544
No 197
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.23 E-value=0.24 Score=51.86 Aligned_cols=52 Identities=25% Similarity=0.391 Sum_probs=41.2
Q ss_pred eEEEEEEEEc-CchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCCh
Q 013068 78 KRHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTE 129 (450)
Q Consensus 78 ~~~tISVlVe-N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~gde 129 (450)
.-+.|.+.+. |+||.|.+|+++|+++|+||.+|....+..... +.|-+.+.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~ 347 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS 347 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence 3578999995 999999999999999999999999955544433 666666533
No 198
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=93.11 E-value=0.31 Score=37.05 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=37.5
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHhhc
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~gde~~ieqL~kQL~K 141 (450)
+.++||++.++...+++.|+||+.+..+..... ..+++++.. ...+.+.+.|.+
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998876544332 246777753 233444444433
No 199
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=93.08 E-value=0.25 Score=40.15 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=44.2
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--h-HHHHHHHHHhcccCE
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--E-SIGKLVQLLHKLIDL 382 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~-~ieQI~kQL~KLidV 382 (450)
...||++.+|.+.|++.|.|++-++.++ ..++++++.++ + .++.|.+-|+|+-+|
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 4579999999999999999999997522 66899998543 3 788999999984433
No 200
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.87 E-value=0.5 Score=49.74 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=55.2
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC--hhHHHHHHHHHhcccCE
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLIDL 382 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--~~~ieQI~kQL~KLidV 382 (450)
+-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+.. ++-..+-|=+.|. +..+++..++|++.-.-
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~ 368 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRS 368 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCc
Confidence 456777778999999999999999999999999999875 4556666667764 45688888888876553
No 201
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.75 E-value=0.36 Score=39.35 Aligned_cols=56 Identities=13% Similarity=0.392 Sum_probs=42.2
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH----HHH-HHHHHhhcCcee
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV 145 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~----~ie-qL~kQL~KLiDV 145 (450)
+.+.||++.+|...|++.|+||+-++.+. .-+.+++..++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 347777775542 344 678888885444
No 202
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.70 E-value=0.27 Score=37.50 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=40.3
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.++||++.++...+++.|.|++.++.+.++ .++.++++.++ .++..+.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~~--~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEKD--AVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHHH--HHHHHHHHHH
Confidence 368999999999999999999999876643 78888998643 5555665555
No 203
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.69 E-value=0.3 Score=56.12 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=51.2
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHhhcCcee
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV 145 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g----de~~ieqL~kQL~KLiDV 145 (450)
....|.|...|+||+|.+|+++|++.|+||.+-.+....+.-.=++.|.+ +++..+.|.+.|.+.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999888877222222333332 356677888888776654
No 204
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=92.68 E-value=0.3 Score=37.10 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=39.7
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHH
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLL 376 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL 376 (450)
.++||+..+|..+|.+.|.|++-++.++ -.+++++..++ +.++.+.+.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence 4679999999999999999999996422 56899998765 5677777665
No 205
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=92.66 E-value=0.57 Score=37.58 Aligned_cols=53 Identities=15% Similarity=0.371 Sum_probs=42.8
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHhhc
Q 013068 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK 141 (450)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde-----~~ieqL~kQL~K 141 (450)
-..+.||++.||...|++.|+|++.++.++ ..+++++..++ ..++.|.+-|+|
T Consensus 10 ~l~~~~g~~~~if~~L~~~~I~v~~i~~s~----~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 10 RMLGAHGFLAKVFEIFAKHGLSVDLISTSE----VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCCccHHHHHHHHHHHcCCeEEEEEcCC----cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 356789999999999999999999886422 45777777544 488899999998
No 206
>PRK11898 prephenate dehydratase; Provisional
Probab=92.49 E-value=0.72 Score=46.50 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=52.6
Q ss_pred EEEEEEEEec-cchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChh--HHHHHHHHHhcccC
Q 013068 314 SHTLSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDE--SIGKLVQLLHKLID 381 (450)
Q Consensus 314 ~htLSilVeN-~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~--~ieQI~kQL~KLid 381 (450)
+-.|...+.| +||.|.++.+.|+++|+|+.+|.--|... +.-..+-+=++|+.+ .+.++.+.|++.-.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 5567777766 49999999999999999999999998754 444555555666443 68899998888654
No 207
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.38 E-value=0.49 Score=49.85 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=51.1
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVN 144 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~g--de~~ieqL~kQL~KLiD 144 (450)
+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+.... + |=|-+.| ++..+++..++|++...
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 66677778999999999999999999999999988877652 2 4444544 44567778787777544
No 208
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.37 E-value=0.68 Score=38.16 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=51.1
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC-C-hHHHHHHHHHhhcCceeeEEEecCCchh
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~g-d-e~~ieqL~kQL~KLiDVi~V~dlt~~~~ 156 (450)
..+.+.+.++||-|.+++.+++ |.||..+.-.... +.+.+.+++.. + .+.++++.+.|++.= .++.++++.+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~ 77 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL 77 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence 4788999999999999999999 6788866655433 33445555542 3 467888888887633 24555666554
Q ss_pred h
Q 013068 157 V 157 (450)
Q Consensus 157 V 157 (450)
.
T Consensus 78 ~ 78 (85)
T cd04906 78 A 78 (85)
T ss_pred H
Confidence 4
No 209
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=92.16 E-value=0.4 Score=35.61 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=38.7
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
..+.||++.++.+.+++.|.|++.++.. + .+++++++.+ ..+++.+-|+|.
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~~--d~~~~~~~l~~~ 60 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDED--DAEKAVRALHEA 60 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeHH--HHHHHHHHHHHH
Confidence 4577999999999999999999999842 1 6688888843 355556666554
No 210
>PRK05092 PII uridylyl-transferase; Provisional
Probab=91.90 E-value=0.54 Score=54.42 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=48.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEE-e----CChHHHHHHHHHhhcCce
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-S----GTERVLRQVVEQLNKLVN 144 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV-~----gde~~ieqL~kQL~KLiD 144 (450)
....|.|...|+||+|.+|+++|++.|+||.+..+....+... |.+.- + .++...+.|.+.|.+.++
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999984322222 33322 1 234456777777766653
No 211
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=91.70 E-value=1.6 Score=43.29 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=60.6
Q ss_pred eEEEEEEEEeccch--HHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEE--eC-ChhHHHHHHHHHhcccCEEEEE
Q 013068 313 RSHTLSMLVNNTPG--VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVV--PG-TDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 313 ~~htLSilVeN~pG--VL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV--~g-d~~~ieQI~kQL~KLidVi~V~ 386 (450)
..|.+++.+.+.++ ++.++...+...+|.+.++.+.+.++++-..|+..+ .+ ++..+++++.+|.....|.+|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 35788999988664 699999999999999999999887666655555544 43 5778999999999999999886
No 212
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=91.68 E-value=0.56 Score=35.63 Aligned_cols=50 Identities=14% Similarity=0.402 Sum_probs=38.5
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHh
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL 139 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL 139 (450)
..++||...+|..+|++.|+|++.++.+. .-+++++..++ +.++.|++.|
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence 34679999999999999999999996422 45777777655 5677766655
No 213
>PRK08210 aspartate kinase I; Reviewed
Probab=91.59 E-value=3.3 Score=43.23 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=78.7
Q ss_pred EEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhh
Q 013068 79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (450)
Q Consensus 79 ~~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V 157 (450)
...|+++-.|. ||.++||.+.|.+.|+||+.++.+. + -+++++.. ...+++.+.|+++- ..-.+
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~ 335 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSV 335 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEE
Confidence 34566666665 9999999999999999999997762 2 34555543 33555555555531 02336
Q ss_pred hhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 158 ERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 158 ~RELaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
.+.+++|.|-... ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 6788988886532 33446777777888888876644444444445555666666654
No 214
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=91.58 E-value=0.42 Score=36.11 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=39.6
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.+.||++.||...+++.|+|++.++-+..+ -+++++++.++ .++..+.|++
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~~--~~~~~~~lh~ 62 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDEDD--ATKALRAVHE 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHHH--HHHHHHHHHH
Confidence 478999999999999999999999776533 77888888543 4555555554
No 215
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=91.52 E-value=0.64 Score=37.74 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=41.7
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--H-HHHHHHHHhhcCcee
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVNV 145 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~-~ieqL~kQL~KLiDV 145 (450)
-..||.+.+|.+.|++.|+|++-++.+. .-+.+++..++ . .++.|.+-|+|+-+|
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 4569999999999999999999997522 34666666432 3 788888888885443
No 216
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.46 E-value=0.3 Score=42.12 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=53.3
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--HHHH----HHHHHhcccCEEEE
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGK----LVQLLHKLIDLHEV 385 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--~ieQ----I~kQL~KLidVi~V 385 (450)
|++..+++.=+||||+.+.|+++++..|.||.- ++.|--.++-.|-+.|+-+++ .... +.+..++|=--+.|
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~v 78 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDVRV 78 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEEEE
Confidence 467899999999999999999999999999975 566767788788888875432 2333 44445555433344
Q ss_pred E
Q 013068 386 Q 386 (450)
Q Consensus 386 ~ 386 (450)
+
T Consensus 79 q 79 (90)
T COG3830 79 Q 79 (90)
T ss_pred e
Confidence 3
No 217
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.25 E-value=0.55 Score=38.94 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=33.6
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD 366 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~ 366 (450)
..+.||++.+|...|++.|+||+-++.++ ..++++++.++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd 50 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSK 50 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhh
Confidence 35789999999999999999999997522 66999998655
No 218
>PLN02317 arogenate dehydratase
Probab=91.20 E-value=1.1 Score=47.59 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=52.0
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC---------------CeeEEEEEEeCC--hhHHHHHHHHH
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE---------------GLSCITTVVPGT--DESIGKLVQLL 376 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~---------------~iSRiTIVV~gd--~~~ieQI~kQL 376 (450)
+-.|...++|+||.|.++...|+.||+|+..|.--|.-.. .-..+-|=+.|. +..+.+..+.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 4566666789999999999999999999999998886554 223434444554 55678888888
Q ss_pred hcccCEEE
Q 013068 377 HKLIDLHE 384 (450)
Q Consensus 377 ~KLidVi~ 384 (450)
.+.-.-++
T Consensus 363 ~~~~~~lr 370 (382)
T PLN02317 363 QEFATFLR 370 (382)
T ss_pred HHhcCeEE
Confidence 77554333
No 219
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.15 E-value=1.1 Score=48.16 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=51.3
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHhhcCc
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV 143 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gd-e~~ieqL~kQL~KLi 143 (450)
+..|.+.+.|+||.|.+|..+|+.+|+|+..|---|+.... . +=|-+.|. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 56788888999999999999999999999999988765442 2 34445554 467888888888866
No 220
>PRK03381 PII uridylyl-transferase; Provisional
Probab=91.05 E-value=0.62 Score=53.07 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=45.8
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC---ChhHHHHHHHHHhcc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG---TDESIGKLVQLLHKL 379 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g---d~~~ieQI~kQL~KL 379 (450)
-.+.|...|+||++++|+|+|++.|+||.+-.+-. ..+..=.++.|.+ .....+++.+.|++.
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~ 665 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRA 665 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence 47899999999999999999999999999988874 4444445555543 212245566665544
No 221
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.00 E-value=0.48 Score=35.81 Aligned_cols=51 Identities=29% Similarity=0.381 Sum_probs=39.0
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.+.||++.|+...+++.|.|++.++.+.++ .+++++++.++ .++..+.|+|
T Consensus 12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~d--~~~~~~~lh~ 62 (66)
T cd04916 12 KNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNED--ADKAVKAIYE 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHHH--HHHHHHHHHH
Confidence 468999999999999999999999876643 56888888543 4555555554
No 222
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.87 E-value=0.74 Score=52.73 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=49.7
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC------hhHHHHHHHHHhccc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT------DESIGKLVQLLHKLI 380 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd------~~~ieQI~kQL~KLi 380 (450)
...|.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-+--.-.|.+.+ ++..++|.+.|.+.+
T Consensus 668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999988776555544444322 223555665555444
No 223
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.68 E-value=0.5 Score=35.59 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=39.8
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
.+.||++.++...+++.|+|++-++.+..+ -+++++++.+ ..++..+-|++.
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~~--~~~~~~~~Lh~~ 63 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAED--DGWAAVKAVHDE 63 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHHH
Confidence 467999999999999999999999876643 5677888743 355556666554
No 224
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=90.45 E-value=1.2 Score=47.89 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=53.4
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC-hhHHHHHHHHHhccc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI 380 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-~~~ieQI~kQL~KLi 380 (450)
+.+|.+.+.|+||.|.++..+|+.+|+|+..|.--|+.. +.-..+-|-++|. +..+.++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 467777779999999999999999999999999988754 3333445556665 467889999998876
No 225
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.33 E-value=0.9 Score=52.54 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhccc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLI 380 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~KLi 380 (450)
..+.|...|+||+|++|+++|++.|+||.+-.+..+.+.-.--.-.|.+.+ ++.+++|.+.|.+.+
T Consensus 702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999998888664444444444322 245566677666544
No 226
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=90.06 E-value=1.3 Score=47.96 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=57.5
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--c-E-EEEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~-i-iTIVV~gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
..+-.|.+.+.|+||.|.++..+|+.+|+|+..|---++... . . +=|-+.+....++++++.|.+..+.+.|.
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 345567777799999999999999999999999988776533 2 3 44556677778899999998888876664
No 227
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=90.03 E-value=0.98 Score=42.84 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=57.4
Q ss_pred cceEEEEEEEE--cCchhHHHHHHHHHhccCceeeeEeeeec--CCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 76 KVKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 76 ~~~~~tISVlV--eN~pGVL~RIagLFsRRGyNIeSLsvg~t--ed~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.|-.+.|.++. .+.||+|+.|+++.+.||++|..+-.... .+...+||++++ .....|+.||.|+--|.+|.-
T Consensus 90 ~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 90 LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence 45667888887 46899999999999999999998877644 344578998864 345568899999998888763
No 228
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=89.48 E-value=2 Score=31.75 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=36.0
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K 141 (450)
..+.||++.|+.+.+++.|+|++.++.. +..+++++... ..+++.+-|+|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDED--DAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeHH--HHHHHHHHHHH
Confidence 4578999999999999999999999842 24577888643 33444444443
No 229
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=89.33 E-value=6.4 Score=42.49 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=90.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHhhcCceeeEEEecCCch
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNEP 155 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL~KLiDVi~V~dlt~~~ 155 (450)
+-+.-......++|++.||.+.+++.|+|++-+..+.++.. +++++.+++ ...+.|.+....+.. .+
T Consensus 309 ~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v------- 377 (447)
T COG0527 309 LITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EV------- 377 (447)
T ss_pred EEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eE-------
Confidence 33444455556679999999999999999999988776665 788777544 233333333332332 22
Q ss_pred hhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 156 HVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 156 ~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.+++.+++|-+--.. .--..+++-...++-+|.-++...+.|-+.=+.+..+..++.|..
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH~ 442 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALHE 442 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHHH
Confidence 267788888885443 334578888899999999999777888887788888887777753
No 230
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=89.28 E-value=1.1 Score=51.65 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=50.1
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhcccC
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLID 381 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~KLid 381 (450)
-.+.|...|+||+|++|+|.|++.|+||.+=.+..+.+.-+--.-.|.+.+ ++.+++|.+.|.+.++
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~ 749 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALN 749 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 488999999999999999999999999999888776665554444444322 3456667777766554
No 231
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=89.18 E-value=1.6 Score=45.32 Aligned_cols=106 Identities=13% Similarity=0.185 Sum_probs=71.9
Q ss_pred EEEEEE---EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068 315 HTLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (450)
Q Consensus 315 htLSil---VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~ 391 (450)
..+++. +.|+||++.|+...|.+.|+||+.++.+.++ ..++++++. +..+++.+.|++...-.... .
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~ 330 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVDE--TDADEAVRALKDQSGAAGLD----R 330 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----e
Confidence 356666 6899999999999999999999999887654 447888863 34666666676653211111 1
Q ss_pred hhHHHhhheeEeecCcc-c----hHHHHHHHHhcCcEEEEecCC
Q 013068 392 PFAERELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDH 430 (450)
Q Consensus 392 ~~V~REL~LIKV~~~~~-~----R~eI~~i~~iFrakIVDvs~~ 430 (450)
-.+.+.+++|-|-...- + -..+++.....+.+|.-++..
T Consensus 331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s 374 (401)
T TIGR00656 331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS 374 (401)
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 12566778887765432 2 246777777778888777644
No 232
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.08 E-value=0.76 Score=36.26 Aligned_cols=46 Identities=26% Similarity=0.420 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHh
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~ 377 (450)
+.||++++++..++.-|+||.-++ ...++.+.|+.+ .+++..+-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is-------S~~~~~ilV~~~--~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS-------SEISISILVKEE--DLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE-------ESSEEEEEEEGG--GHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE-------EeeeEEEEEeHH--HHHHHHHHhc
Confidence 599999999999999999998887 335678888744 4677666665
No 233
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.70 E-value=1.3 Score=36.65 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=31.7
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde 129 (450)
..+.||++.+|...|++.|+||+-++.+. .-+.+++..++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd 50 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK 50 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence 46789999999999999999999997522 34777776544
No 234
>PLN02550 threonine dehydratase
Probab=88.54 E-value=12 Score=42.03 Aligned_cols=135 Identities=17% Similarity=0.289 Sum_probs=91.2
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
..++.+.+.+-++||.|.+++.++..+ ||-.+.--..... ..+.+.+. .+.+.+++|+..|++.= ..+.|+++.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 456789999999999999999999987 9998877653222 23444443 24668999999998744 578888886
Q ss_pred hhhhh-------h------eeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----c--CC---EEEEEEeCChhHHHHHH
Q 013068 155 PHVER-------E------LMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----S--EH---ALTIEVTGDPGKMVAVQ 210 (450)
Q Consensus 155 ~~V~R-------E------LaLIKV~~~~~~r~eI~~l~~~frAk--IVDv----s--~~---sl~iEvTG~~~KIdafi 210 (450)
+...- | =+|+.|..+ +......+.++.++.+ |-.. + .. .+-||+. +++++.|+
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l~ 567 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEFK 567 (591)
T ss_pred hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHHH
Confidence 65421 1 135666555 5666777777777763 2221 0 11 1346775 47888888
Q ss_pred HHhccCCc
Q 013068 211 RNLSKFGI 218 (450)
Q Consensus 211 ~~L~~fGI 218 (450)
+.|+..|.
T Consensus 568 ~~l~~~gy 575 (591)
T PLN02550 568 SRANALGY 575 (591)
T ss_pred HHHHHcCC
Confidence 88887764
No 235
>PLN02317 arogenate dehydratase
Probab=88.52 E-value=2.2 Score=45.21 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=48.1
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC----------------cE-EEEEEeC--ChHHHHHHHHHh
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSG--TERVLRQVVEQL 139 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~----------------~i-iTIVV~g--de~~ieqL~kQL 139 (450)
+-.|.+.++|+||.|.++...|+.||+|+..|---|.... .+ |=|-+.+ .+..+++..+.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 4566677799999999999999999999999988775443 22 3333344 356677777777
Q ss_pred hcCce
Q 013068 140 NKLVN 144 (450)
Q Consensus 140 ~KLiD 144 (450)
.+...
T Consensus 363 ~~~~~ 367 (382)
T PLN02317 363 QEFAT 367 (382)
T ss_pred HHhcC
Confidence 66544
No 236
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=88.44 E-value=1.3 Score=51.25 Aligned_cols=66 Identities=8% Similarity=0.241 Sum_probs=48.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe---C----ChHHHHHHHHHhhcCc
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---G----TERVLRQVVEQLNKLV 143 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~---g----de~~ieqL~kQL~KLi 143 (450)
....|.|+..|+||+|.+|+++|++.|.||.+-.+..+.+...=++.|. | +++..+.|.+.|.+.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999987733322233332 2 2345666777775544
No 237
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=88.28 E-value=1.1 Score=35.53 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.7
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (450)
..|.||++++|.+.++++|.||+-++.. .+ .++++++.+
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~~ 47 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDGE 47 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEchh
Confidence 3578999999999999999999999554 22 388888854
No 238
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.01 E-value=5.4 Score=42.17 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc---CceeeEEEecCCchhhhhheeeEEE
Q 013068 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL 166 (450)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K---LiDVi~V~dlt~~~~V~RELaLIKV 166 (450)
||++.||.+.|++.|+||+.++.+.++ .-+.++++.++ .+...+.|.+ ...+..+. +.+.+++|.|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv 383 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL 383 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence 899999999999999999999744332 23777776433 3333343433 33333333 5678899998
Q ss_pred eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 167 ~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
-.. +.--.++++.....+-.|.-++.....+-++=+.+..+..++.|.+
T Consensus 384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~ 437 (441)
T TIGR00657 384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN 437 (441)
T ss_pred EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence 432 3445688888888888888775444445555555666666776653
No 239
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=87.98 E-value=0.75 Score=39.71 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=40.0
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEE--EEeCC
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTI--VVSGT 128 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTI--VV~gd 128 (450)
||+..|+|.=.||||+.+.|+++|++.|.||.-++ .|--.+++|+ .|+.+
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDIS 52 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceeeeEEcCC
Confidence 57889999999999999999999999999998655 5555566555 45543
No 240
>PRK02047 hypothetical protein; Provisional
Probab=87.78 E-value=5.7 Score=33.93 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=64.3
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCce--eeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYN--IQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyN--IeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..+.+.+...|.++..+.|..++.++... -.+++.-++....+-.+|+.+. .++++++.|=+.|.+.-.|.-|
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v 90 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV 90 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 35899999999999999999999998555 6779999999999999999987 5778899999999999888654
No 241
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=87.11 E-value=1.7 Score=31.72 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=39.3
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
..+++|++.++...|++.|.|+..++.+..+ .+++++++.+ ..+.+.+.|+|.
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~~--~~~~~~~~l~~~ 62 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDED--DADKAVKALHEE 62 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeHH--HHHHHHHHHHHH
Confidence 3478999999999999999999998775522 5577777743 355566666553
No 242
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=86.99 E-value=2.5 Score=33.87 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=44.5
Q ss_pred eEEEeC--CCCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 013068 163 LIKLNG--DTSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KEL 221 (450)
Q Consensus 163 LIKV~~--~~~~r~eI~~l~~~frAkI------VDv----s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEi 221 (450)
++|+.. +....+-|.++++.|+..+ ||- .-+.+++|+.|++++++++++.|+..|+ .|.
T Consensus 4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence 456654 4466778999999988665 333 5578999999999999999999999996 443
No 243
>PRK08639 threonine dehydratase; Validated
Probab=86.59 E-value=4.9 Score=42.47 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=60.9
Q ss_pred eEEEEEEEEeccchHHHHHHH-HHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItg-LFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
+...+++..-++||-|.++.. +++.++ ||..+.--.....+..++.+++.. +.+.++++..+|++.=. ++.++++
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~Gy--~~~~~~~ 411 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFGP--SYIDINP 411 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCCC--ceEECCC
Confidence 467999999999999999999 555555 999986554445556678888874 44689999999998653 5556777
Q ss_pred ChhHHH
Q 013068 391 LPFAER 396 (450)
Q Consensus 391 ~~~V~R 396 (450)
.+.++.
T Consensus 412 ~~~~~~ 417 (420)
T PRK08639 412 NEPLYN 417 (420)
T ss_pred CHHHHH
Confidence 666543
No 244
>PRK08526 threonine dehydratase; Provisional
Probab=86.53 E-value=3.2 Score=43.87 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=55.9
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEe-CChhHHHHHHHHHhcc
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL 379 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gd~~~ieQI~kQL~KL 379 (450)
+.+.+.+.+.++||-|.+++.++++.|-||..+.-.... ..+-.++++++. -+.+.+++|...|++.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 468999999999999999999999999999998876533 347788888887 3566899999988654
No 245
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=86.14 E-value=1.8 Score=37.92 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=52.1
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i----iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
+-|.+|..|..+-...|..+.+++.++....+ + ++|.+.|+-..+-..+++|+++-.++.|++++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 45899999999999999999999998654443 2 78889999999999999999999999998775
No 246
>PRK09034 aspartate kinase; Reviewed
Probab=86.09 E-value=12 Score=40.04 Aligned_cols=118 Identities=12% Similarity=0.204 Sum_probs=74.2
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH--HH-HHHHHHhhcCceeeEEEecCCchhhhhheee
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELML 163 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~--~i-eqL~kQL~KLiDVi~V~dlt~~~~V~RELaL 163 (450)
..+||++.||.+.|++.|+||+.++ ....-++++++.++. .. ..+...|++-..+..+. +.+.+++
T Consensus 319 ~~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~-------~~~~va~ 387 (454)
T PRK09034 319 NREVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELE-------IEHDLAI 387 (454)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEE-------EeCCEEE
Confidence 3479999999999999999999983 222337788875432 11 45555665544433332 6678999
Q ss_pred EEEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068 164 IKLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 164 IKV~~~-----~~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
|.+-.. +.--..++.....++.+|.-++ .....|-++=+.+..+..++.|..
T Consensus 388 VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~ 446 (454)
T PRK09034 388 IMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYN 446 (454)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHH
Confidence 999432 2344578888888888885443 222334444444555555665543
No 247
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=86.02 E-value=2.3 Score=33.51 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL 139 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL 139 (450)
+.||+++|+++.++..|+||.-++ ++. -+.+.|.. +.+++.++-|
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~--~~~~~A~~~L 63 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKE--EDLEKAVEAL 63 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEG--GGHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeH--HHHHHHHHHh
Confidence 599999999999999999999888 332 35566653 3344444444
No 248
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.84 E-value=2.2 Score=32.40 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=36.2
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhh
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~ 140 (450)
.+.||++.|+...|++.|+|++.++-+..+ ..+.+++..++ .+.+.+.|.
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh 61 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIH 61 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHH
Confidence 468999999999999999999999876532 44777776533 333344443
No 249
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.66 E-value=1.8 Score=32.09 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=37.1
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
..+.||++.++...+++.|.|++.++.. + .+++++++.+ ..+++.+-|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~~--~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDED--DAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeHH--HHHHHHHHHHH
Confidence 3577999999999999999999999742 1 5688888743 34555555554
No 250
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=85.58 E-value=2.5 Score=48.75 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=46.0
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhc
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK 378 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~K 378 (450)
..+|.|...|+||+|.+|+.+|.+-|++|.+--+..- .+.+--+-.|.+.+ +...+.|.++|.+
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~-gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~ 851 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI-GEKAEDFFILTNQQGQALDEEERKALKSRLLS 851 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc-CceEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence 4689999999999999999999999999999777654 34444444444422 2233666666543
No 251
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=85.46 E-value=5.8 Score=41.88 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=62.5
Q ss_pred eEEEEEEEEeccchHHHHHHH-HHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItg-LFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
+...+++.+-++||-|.+++. +++.++ ||..+.-......+..++.+.+.. +.+.+++|.+.|++.= .++.++++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 400 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE 400 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence 467999999999999999999 555545 999777665556678888888874 4578899999998864 35567777
Q ss_pred ChhHHH
Q 013068 391 LPFAER 396 (450)
Q Consensus 391 ~~~V~R 396 (450)
.+.++.
T Consensus 401 ~~~~~~ 406 (409)
T TIGR02079 401 NDILYN 406 (409)
T ss_pred CHHHHH
Confidence 766554
No 252
>PRK04374 PII uridylyl-transferase; Provisional
Probab=85.42 E-value=2.6 Score=48.85 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=46.2
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC---hhHHHHHHHHHhc
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHK 378 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd---~~~ieQI~kQL~K 378 (450)
..+.|...|+||++++|+|+|++.|+||.+--+-.+.+.-.--.-.|.+.+ .+..+++.+.|.+
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQ 757 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 478999999999999999999999999999888777655444433344322 2345555555555
No 253
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=84.90 E-value=7.7 Score=38.53 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=58.2
Q ss_pred ceEEEEEEEEcCchh--HHHHHHHHHhccCceeeeEeeeecCCCc--EEEE--EEeC-ChHHHHHHHHHhhcCceeeEEE
Q 013068 77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFTI--VVSG-TERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 77 ~~~~tISVlVeN~pG--VL~RIagLFsRRGyNIeSLsvg~ted~~--iiTI--VV~g-de~~ieqL~kQL~KLiDVi~V~ 149 (450)
...|.+++...++++ ++.++...+...+|.+.++.+.+.++++ .++. ...+ ++..+++++.+|...-.|.+|.
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 346788888877664 6999999999999999999998766554 3444 3333 5788999999999999999886
No 254
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.74 E-value=2.1 Score=33.39 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
+.||++.|+...|++.|+||.-++-|.++ .+++++++.+ ..++..+.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~----~sis~~v~~~--~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASK----VNISLIVNDS--EAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence 46899999999999999999999988865 3588888854 45666666654
No 255
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=84.58 E-value=2.7 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=32.5
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g 127 (450)
..+.||++.||...+++.|+|++.++-+..+ ..+++++..
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~ 50 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDE 50 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence 4578999999999999999999999875532 457777774
No 256
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=84.48 E-value=3 Score=30.32 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=36.2
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K 141 (450)
..+++|.+.++...|++.|+|+..++.+.. ...++++++. ...+.+.+.|+|
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~ 61 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHE 61 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHH
Confidence 457899999999999999999998876542 2336666654 334444444443
No 257
>PRK00907 hypothetical protein; Provisional
Probab=84.02 E-value=7.9 Score=33.42 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=63.7
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCc--eeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGY--NIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGy--NIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..+.|.|.-.+++++...|..++.+.+- +=.++++-++....+-.+|+.+. .+.++++.|=+.|.+.-.|.-|
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkmv 91 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKWT 91 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 3589999999999999999999998865 56788889999999999999987 4677899999999999888543
No 258
>PRK09224 threonine dehydratase; Reviewed
Probab=83.78 E-value=33 Score=37.47 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=54.9
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEE--EeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIV--V~gde~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
++..+++.+-++||.|.+++.+++ +-||.-+.--... +.+.+.+. +.+.+..+++|.+.|++.= .++.++++.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~n 402 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSDD 402 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCCC
Confidence 578999999999999999999999 6899888765432 22334444 4444445889999997743 467777776
Q ss_pred hhh
Q 013068 155 PHV 157 (450)
Q Consensus 155 ~~V 157 (450)
+..
T Consensus 403 e~~ 405 (504)
T PRK09224 403 ELA 405 (504)
T ss_pred HHH
Confidence 543
No 259
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=83.59 E-value=2.8 Score=42.78 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=89.8
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChHHHHHHHHHhhcCceeeEE---
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVNVIKV--- 148 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~g--de~~ieqL~kQL~KLiDVi~V--- 148 (450)
.++.++|.+--.++||..++|++.+.++|.||....--...+.++ |++...+ .....+++...+..+-+=...
T Consensus 4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~ 83 (287)
T COG0788 4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR 83 (287)
T ss_pred CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence 346789999999999999999999999999999888763333455 6666553 323466666665554431111
Q ss_pred -----------EecCCchhhhhheee--------EEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHH
Q 013068 149 -----------EDISNEPHVERELML--------IKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209 (450)
Q Consensus 149 -----------~dlt~~~~V~RELaL--------IKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdaf 209 (450)
.-.+.+.+=-.+|+. +.|.+--.+-.+...+++.|+----.+.-+.-. .++.=+..
T Consensus 84 ~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~~ 158 (287)
T COG0788 84 LHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEARL 158 (287)
T ss_pred EeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHHH
Confidence 111222222222210 111111145567778888887655444322111 46777788
Q ss_pred HHHhccCCcEEEeeccceeeecCcCCCCc
Q 013068 210 QRNLSKFGIKELARTGKIALRREKLGDTA 238 (450)
Q Consensus 210 i~~L~~fGIlEiaRTG~iAl~Rg~~~~~~ 238 (450)
+++++.||+ -.+-|+|=-+.++.
T Consensus 159 ~~ll~~~~~------DlvVLARYMqILS~ 181 (287)
T COG0788 159 LELLEEYGA------DLVVLARYMQILSP 181 (287)
T ss_pred HHHHHHhCC------CEEeehhhHhhCCH
Confidence 999999983 23456666554444
No 260
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=83.10 E-value=3.5 Score=29.26 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL 376 (450)
+.||.+.++...+++.|+||+.++.+.. + .+++++++.+ ..+++.+-|
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~~--~~~~~~~~l 59 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDES--DLEKAVKAL 59 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeHH--HHHHHHHHh
Confidence 4799999999999999999999988764 2 4577777743 355554433
No 261
>PRK09084 aspartate kinase III; Validated
Probab=82.73 E-value=23 Score=37.94 Aligned_cols=114 Identities=15% Similarity=0.287 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH-------HHHHHHHHhhcCceeeEEEecCCchhhhhh
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~-------~ieqL~kQL~KLiDVi~V~dlt~~~~V~RE 160 (450)
++||.++||...|++.|+||+-++.++ .-++++++.++. ..+.+.+.|+++-. + .+.+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~ 383 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG 383 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence 689999999999999999999998432 347777775442 22455555554211 1 25678
Q ss_pred eeeEEEeCCCC-C----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTS-T----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~-~----r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
+++|.|-.... + -..++......+-.++..+.....|-+.=+.+..+..++.|..
T Consensus 384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~ 443 (448)
T PRK09084 384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQ 443 (448)
T ss_pred eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHH
Confidence 99999965432 2 2345554544567777776776666666666666666666653
No 262
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=82.58 E-value=4 Score=32.29 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=30.0
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g 127 (450)
..|.||.+.+|.+.++++|+||+-++.. .+ -+++++..
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence 4578999999999999999999999554 22 36666653
No 263
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=82.55 E-value=5.3 Score=28.31 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=31.0
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g 127 (450)
+.||.+.|+...+++.|+||+.++.+.. ...+++++..
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~ 49 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDE 49 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeH
Confidence 5799999999999999999999988764 2336677764
No 264
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.29 E-value=3.6 Score=34.33 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=47.2
Q ss_pred EEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC---hhHHHHHHHHHhcccCEEEE
Q 013068 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 320 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd---~~~ieQI~kQL~KLidVi~V 385 (450)
+.++..|.+.|+..+|.+.|.++|-+. .|+-.|+|+++.+ ++.+++|++.|++-.+.-.+
T Consensus 10 ~Mn~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 10 LMNREVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred hccchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 347889999999999999999999864 3556699999976 55778888888875554433
No 265
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=82.28 E-value=5 Score=35.19 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeE--EEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSC--ITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSR--iTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
+-|.+|..|..+-...|..+.+++.++.. .+.+.+ ++|.+.|+-..+-+..++|+++..++.|.+++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 46899999999999999999999999644 466666 45556799999999999999999999999886
No 266
>PRK04998 hypothetical protein; Provisional
Probab=82.02 E-value=11 Score=31.84 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=60.8
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..|.+.+...+.++.++.|..+|.+..-.-+.++.-++....+-.+|+.+. -++++++.|=+.|.+...|+-|
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~mv 87 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRMV 87 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 358999999999999999999997764333457778888899999999987 5778899999999998888643
No 267
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=81.92 E-value=10 Score=37.26 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=54.5
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~ 386 (450)
|.+.+.+++. -+..+...|.+.++.+.++.....+++..-.+++.++ .+...+++..+|.++.+|.+|.
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 5555555444 3688889999999999999988777676666777777 4467899999999999999885
No 268
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.90 E-value=3.7 Score=30.79 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=36.6
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K 141 (450)
..+.||++.++...+++.|+|++-++.+..+ ..+++++..+ ..+++.+-|.+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~ 62 (66)
T cd04924 11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence 3478999999999999999999999876533 3466777642 23444444433
No 269
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.88 E-value=9 Score=28.21 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.6
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g 127 (450)
..+.||++.|+...+++.|+|++.++.. ...+++++..
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~ 47 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE 47 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH
Confidence 4578999999999999999999999842 2347777764
No 270
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.86 E-value=3.8 Score=32.38 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=33.4
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (450)
..+.||++.++...+++.|.|++.++.+..+ .+++++++.+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~~ 51 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDES 51 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeHH
Confidence 4578999999999999999999999887443 2677888753
No 271
>PRK14434 acylphosphatase; Provisional
Probab=81.78 E-value=3.6 Score=35.10 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr---AkIVDvs~~sl~iEvTG~~-~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...+.++.+++.|++ ++++.|++.|+.
T Consensus 16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 46889999999999 9999999999999999998 699999999975
No 272
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.35 E-value=4.5 Score=30.41 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=32.9
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd 128 (450)
+.+.||++.|+...+++.|+|++.++.+.++ ..+++++..+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~ 51 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNE 51 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHH
Confidence 4578999999999999999999999876532 4477777643
No 273
>PRK06291 aspartate kinase; Provisional
Probab=81.30 E-value=14 Score=39.73 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=75.1
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEE
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 166 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV 166 (450)
.+.||++.|+...|++.|+||+-++.+.++ .-++++++.++ .++..+.|.+...=. .-..=.+..++++|.|
T Consensus 332 ~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isv 403 (465)
T PRK06291 332 VGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEG----LVRDVTFDKDVCVVAV 403 (465)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHh----cCcceEEeCCEEEEEE
Confidence 378999999999999999999999866433 23677776432 333344343321100 0011135678899988
Q ss_pred eCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068 167 NGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 167 ~~~~-----~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
-... .--..++......+.+|.-++ ....-|-+.=+.+..+..++.|..
T Consensus 404 vG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~ 459 (465)
T PRK06291 404 VGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD 459 (465)
T ss_pred EcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence 6543 233467777777788886554 444455555556667777776653
No 274
>PRK12483 threonine dehydratase; Reviewed
Probab=80.60 E-value=9.9 Score=41.82 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=76.6
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHH-HHHHHHHhcccCEEEEEecCC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESI-GKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~i-eQI~kQL~KLidVi~V~dlt~ 390 (450)
+.+.+++...++||-|.+++.+++.+ ||..+.--. ...+-..+.+.+.. +.+.+ ++|.+.|++.= .++.++++
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd 418 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY-ADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD 418 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe-cCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence 46899999999999999999999988 999887765 33344777777763 33455 99999997744 46778888
Q ss_pred ChhH---------------HHhhheeEeecCccchHHHHHHHHhcCc
Q 013068 391 LPFA---------------ERELILIKIAVNTAARRDVLDIAKIFRA 422 (450)
Q Consensus 391 ~~~V---------------~REL~LIKV~~~~~~R~eI~~i~~iFra 422 (450)
.+.. .|| +|+.|..+ +.....++.++.++-
T Consensus 419 ne~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~ 463 (521)
T PRK12483 419 DELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGP 463 (521)
T ss_pred CHHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCC
Confidence 7663 344 46667664 455678888887775
No 275
>PLN02551 aspartokinase
Probab=80.38 E-value=20 Score=39.52 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=72.4
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH--------HHHHHHHHhhcCceeeEEEecCCchhhh
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~--------~ieqL~kQL~KLiDVi~V~dlt~~~~V~ 158 (450)
-++||.++||.+.|.+.|+||+-++.+ + .-++++++.++. .++++...|+++ ..| .+.
T Consensus 377 ~~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~ 442 (521)
T PLN02551 377 LGQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLL 442 (521)
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEe
Confidence 368999999999999999999999643 2 337777776542 223333344432 112 256
Q ss_pred hheeeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068 159 RELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 159 RELaLIKV~~~~~~----r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
+.+++|-|-..... -..++......+.+|.-++ ...+-|-+.=+.+..+..++.|..
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~ 505 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence 78888888654222 2356666667777884444 444555555555666666666654
No 276
>PRK08210 aspartate kinase I; Reviewed
Probab=80.27 E-value=13 Score=38.80 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=64.1
Q ss_pred EEEEEEecc-chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChhH
Q 013068 316 TLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (450)
Q Consensus 316 tLSilVeN~-pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V 394 (450)
.+++.-.|. ||.++||.+.|.+.|+||+.++.... .++++++. ...+++.+.|+++-. .-.+
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~~---------~v~~ 335 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLGL---------KPSV 335 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhCC---------cEEE
Confidence 445554444 99999999999999999999977731 36677763 336666666666421 2345
Q ss_pred HHhhheeEeecCcc-----chHHHHHHHHhcCcEEEEec
Q 013068 395 ERELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVS 428 (450)
Q Consensus 395 ~REL~LIKV~~~~~-----~R~eI~~i~~iFrakIVDvs 428 (450)
.+.+++|.|-...- .-..+++.....+-+|+..+
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~ 374 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA 374 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe
Confidence 67788888865432 12456766677777777554
No 277
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=79.83 E-value=4.3 Score=31.36 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=36.6
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
.+.||++.|+...+++.|+|+..++- .-.+|.++++.+ ..++.++.|++-
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~------Se~~is~~v~~~--~~~~av~~Lh~~ 61 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD------SHTTISCLVSED--DVKEAVNALHEA 61 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc------CccEEEEEEcHH--HHHHHHHHHHHH
Confidence 46899999999999999999964442 223677888744 456666666653
No 278
>PRK06635 aspartate kinase; Reviewed
Probab=79.83 E-value=8.2 Score=40.11 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=67.1
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc---cCEEEEEecCCChhHHHh
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITHLPFAERE 397 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL---idVi~V~dlt~~~~V~RE 397 (450)
..|+||+|.|+...+.+.|+||+.++.+.++ ++...++++++.+ ..++..+.|+++ +.+..+ .+.+.
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~-~~~~~is~~v~~~--~~~~a~~~L~~~~~~~~~~~i-------~~~~~ 339 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSE-DGKTDITFTVPRD--DLEKALELLEEVKDEIGAESV-------TYDDD 339 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCC-CCceeEEEEEcHH--HHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence 5789999999999999999999998777543 2356678888643 356666667664 222222 23456
Q ss_pred hheeEeecC-----ccchHHHHHHHHhcCcEEEEec
Q 013068 398 LILIKIAVN-----TAARRDVLDIAKIFRARAVDVS 428 (450)
Q Consensus 398 L~LIKV~~~-----~~~R~eI~~i~~iFrakIVDvs 428 (450)
++++.|... +..-.++++....++.+|.-++
T Consensus 340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 777877432 2223478888888888887774
No 279
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=79.55 E-value=28 Score=40.35 Aligned_cols=116 Identities=13% Similarity=0.208 Sum_probs=77.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHhhcCceeeEEEecCCchhhhhh
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde-----~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RE 160 (450)
+-++||+++||.+.|++.|+||+-++.++ .-++++++..+ +.++.+.++|.++-.| + +.+.
T Consensus 332 ~~~~~g~~a~if~~la~~~I~Vd~I~sse----~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i---~-------~~~~ 397 (861)
T PRK08961 332 MWQQVGFLADVFTLFKKHGLSVDLISSSE----TNVTVSLDPSENLVNTDVLAALSADLSQICRV---K-------IIVP 397 (861)
T ss_pred ccccccHHHHHHHHHHHcCCeEEEEEcCC----CEEEEEEccccccchHHHHHHHHHHHhhcCcE---E-------EeCC
Confidence 44789999999999999999999886431 33777776543 4566667777653222 1 3456
Q ss_pred eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
+++|-|--.. .--..++......+..++..+...+-|-+.=+.+..+..++.|..
T Consensus 398 va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~ 457 (861)
T PRK08961 398 CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLHA 457 (861)
T ss_pred eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHHH
Confidence 7888885543 223356666666678888887776666565566666666666653
No 280
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=79.40 E-value=11 Score=40.99 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=62.0
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITHL 391 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~~ 391 (450)
+.+.+++..-++||-|.+++.+++.+ ||.-+.--. ...+..++.+.+.- +.+.+++|.++|++.= .++.|+++.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~-~~~~~a~v~vgie~~~~~~~~~l~~~L~~~G--y~~~dls~n 398 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY-ADRKDAHIFVGVQLSNPQERQEILARLNDGG--YSVVDLTDD 398 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe-cCCCeEEEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCCC
Confidence 46899999999999999999999984 998887765 34566788888773 5678999999998853 667788876
Q ss_pred hhH
Q 013068 392 PFA 394 (450)
Q Consensus 392 ~~V 394 (450)
+..
T Consensus 399 e~~ 401 (499)
T TIGR01124 399 ELA 401 (499)
T ss_pred HHH
Confidence 544
No 281
>PLN02550 threonine dehydratase
Probab=79.37 E-value=9.7 Score=42.63 Aligned_cols=105 Identities=11% Similarity=0.175 Sum_probs=78.1
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
.+++.+.+.+-++||-|.+++.++..+ ||..+.--. ...+-.++.+.+. -+.+.+++|...|++.= .++.|+++
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~ 489 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTS 489 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCC
Confidence 356889999999999999999999987 999888777 4455677777776 36678999999998854 58888998
Q ss_pred ChhHHH-------hh------heeEeecCccchHHHHHHHHhcCc
Q 013068 391 LPFAER-------EL------ILIKIAVNTAARRDVLDIAKIFRA 422 (450)
Q Consensus 391 ~~~V~R-------EL------~LIKV~~~~~~R~eI~~i~~iFra 422 (450)
.+...- |- +|+.|..+ +.....++.++.++.
T Consensus 490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~ 533 (591)
T PLN02550 490 NDLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSP 533 (591)
T ss_pred ChHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCC
Confidence 766522 21 25555544 334567777777766
No 282
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.12 E-value=6.9 Score=30.45 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhh
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~ 140 (450)
+.||++.|+...|++.|+||.-++-|.++. -++++++.+ ..+..++.|.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~--~~~~av~~Lh 60 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDS--EAEGCVQALH 60 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHH--HHHHHHHHHH
Confidence 468999999999999999999998777632 477888753 3344444443
No 283
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=78.68 E-value=7.6 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=33.7
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhh
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~ 140 (450)
..+.||++.|+...+.+.|+|+..++. .+.-+.++++.+ ..++.++.|.
T Consensus 11 ~~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh 59 (64)
T cd04937 11 IRGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALH 59 (64)
T ss_pred ccCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHH
Confidence 347899999999999999999974442 223477778643 3344444443
No 284
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=78.04 E-value=5.5 Score=40.76 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-C--CeeEEEEEEeCChhHHHHHHHHHhcccC
Q 013068 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-E--GLSCITTVVPGTDESIGKLVQLLHKLID 381 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~--~iSRiTIVV~gd~~~ieQI~kQL~KLid 381 (450)
.++.++|.+-..++||+.++|++...++|.||....-- +.. . -+-|+.+-..+.+...+++...+..+-+
T Consensus 4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999887665 221 2 3556666666664556666666665444
No 285
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.48 E-value=6.5 Score=32.84 Aligned_cols=60 Identities=12% Similarity=0.339 Sum_probs=45.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC---hHHHHHHHHHhhcCceeeEEE
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd---e~~ieqL~kQL~KLiDVi~V~ 149 (450)
..++.|.+.|+..+|.+.|.++|-+..| ..+ |+++++.+ ++.++.|++.|.+-.+.-.++
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PSG---ID~-~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i~ 73 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPSG---IDD-ISIIIRDNQLTDEKEQKILAEIKEELHPDEIE 73 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecCC---Ccc-EEEEEEccccchhhHHHHHHHHHHhcCCCEEE
Confidence 4678999999999999999999977533 222 88999876 447777888887765554443
No 286
>PRK14426 acylphosphatase; Provisional
Probab=77.44 E-value=6.5 Score=33.38 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|..+.++|..++ |.|-...++++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 57889999998877 6677788889999999999999999999975
No 287
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=76.58 E-value=65 Score=35.28 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=55.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt~~~ 155 (450)
+...+++..-++||.|.+++.+++.+ ||.-+.--..... ..+.+.+. .+.+.+++|+++|++. =..+.++++.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~ne 399 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDDE 399 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCCH
Confidence 57899999999999999999999974 9988877643322 33444444 2467899999999774 25667777654
Q ss_pred h
Q 013068 156 H 156 (450)
Q Consensus 156 ~ 156 (450)
.
T Consensus 400 ~ 400 (499)
T TIGR01124 400 L 400 (499)
T ss_pred H
Confidence 3
No 288
>PRK09181 aspartate kinase; Validated
Probab=75.95 E-value=40 Score=36.70 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=73.0
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEE
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 166 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV 166 (450)
-++||.+.||.+.|.+.|+||+.++.+. .-+++++..+...++.+.+.|++...-..++ + +++++|-|
T Consensus 340 ~~~~g~~~~if~~l~~~~i~v~~i~ss~----~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-------~-~~~a~Vsv 407 (475)
T PRK09181 340 VGEDGYDLEILEILTRHKVSYISKATNA----NTITHYLWGSLKTLKRVIAELEKRYPNAEVT-------V-RKVAIVSA 407 (475)
T ss_pred CCcchHHHHHHHHHHHcCCeEEEEEecC----cEEEEEEcCChHHHHHHHHHHHHhcCCceEE-------E-CCceEEEE
Confidence 3679999999999999999999765442 2477777765334567777777644322221 2 67888888
Q ss_pred eCCCCCHH----HHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHhc
Q 013068 167 NGDTSTWP----EIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 167 ~~~~~~r~----eI~~l~~~frAkIVDvs~~--sl~iEvTG~~~KIdafi~~L~ 214 (450)
--....+. .++......+-+|.-++.. .+-|-+.=+.+..+..++.|.
T Consensus 408 VG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH 461 (475)
T PRK09181 408 IGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALH 461 (475)
T ss_pred eCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 65443332 5666667777888555444 334444444445555555544
No 289
>PRK08526 threonine dehydratase; Provisional
Probab=75.86 E-value=13 Score=39.41 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=50.0
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC---c--EEEEEEe-CChHHHHHHHHHhhc
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---A--LFTIVVS-GTERVLRQVVEQLNK 141 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~---~--iiTIVV~-gde~~ieqL~kQL~K 141 (450)
-+...+.+.+.++||.|.+++.++++.|-||..+.-...... + .+++++. -+.+.+++|...|++
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999887553222 2 3555554 345678888887754
No 290
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=75.46 E-value=16 Score=39.44 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=70.8
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-hH-HHHHHHHHhcccCEEEEEecCCCh
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ES-IGKLVQLLHKLIDLHEVQDITHLP 392 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-~~-ieQI~kQL~KLidVi~V~dlt~~~ 392 (450)
+.-......++|++.||.+.+.+.|+|++-+..+.++.. |++++++++ .. .+.+.+....+.. +-
T Consensus 311 ~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~----i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v 377 (447)
T COG0527 311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS----ISFTVPESDAPRALRALLEEKLELLA---------EV 377 (447)
T ss_pred EEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe----EEEEEchhhHHHHHHHHHHHHhhhcc---------eE
Confidence 333444456679999999999999999999998887765 999998654 22 2223333222322 22
Q ss_pred hHHHhhheeEeecCcc-----chHHHHHHHHhcCcEEEEecCCEEEEE
Q 013068 393 FAERELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVSDHTITLE 435 (450)
Q Consensus 393 ~V~REL~LIKV~~~~~-----~R~eI~~i~~iFrakIVDvs~~si~iE 435 (450)
.+++.+++|-+--..- --.++++-...++-+|.-++...+.|-
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is 425 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISIS 425 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEE
Confidence 3456677776644322 224788888888889988885444443
No 291
>PRK14429 acylphosphatase; Provisional
Probab=75.16 E-value=8.6 Score=32.47 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...++++.+++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999998876 6788888899999999999999999999985
No 292
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=75.09 E-value=11 Score=29.62 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=31.8
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (450)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g 127 (450)
-..+.||++.++...|++.|+|++.++.+..+ ..+.+++..
T Consensus 10 ~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~ 50 (80)
T cd04921 10 GMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDE 50 (80)
T ss_pred CCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeH
Confidence 35578999999999999999999999876332 235566654
No 293
>PRK00341 hypothetical protein; Provisional
Probab=74.90 E-value=21 Score=30.50 Aligned_cols=71 Identities=10% Similarity=0.236 Sum_probs=61.1
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCcee--eeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNI--QSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNI--eSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
.+.+.|.-.+.+++.+.|..++.|.. .. .++++-++....+..+|+.+. .++++++.|=+.|.+.-.|.-|
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~mv 90 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVHMV 90 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 48999999999999999999998664 54 567778899999999999987 5778899999999999888643
No 294
>PRK09224 threonine dehydratase; Reviewed
Probab=73.56 E-value=22 Score=38.70 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=60.7
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
++..+++..-++||-|.+++.+++ +-||.-+.--. ...+..++.+.+.- .++.+++|.+.|++.= .++.++++
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~-~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ 401 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRY-ADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD 401 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEe-cCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence 468999999999999999999999 68998877665 34566777777763 3344999999998754 47778888
Q ss_pred ChhHH
Q 013068 391 LPFAE 395 (450)
Q Consensus 391 ~~~V~ 395 (450)
.+...
T Consensus 402 ne~~k 406 (504)
T PRK09224 402 DELAK 406 (504)
T ss_pred CHHHH
Confidence 76543
No 295
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=73.45 E-value=8.9 Score=33.83 Aligned_cols=57 Identities=25% Similarity=0.496 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhccC--ceeeeeeeeecC-CCCeeEEEEEEeCChhHHHHHHHHHhcccCE
Q 013068 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382 (450)
Q Consensus 325 pGVL~RItgLFsRRG--yNIeSLtVg~te-~~~iSRiTIVV~gd~~~ieQI~kQL~KLidV 382 (450)
.|+|+|+..+.-..| |.|..+.||.+. ++.+.||.+..+ |++.+++|..+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~-d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAP-DEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEES-SHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecC-CHHHHHHHHHHHHHHcCC
Confidence 589999998777666 899999999864 345555554433 777899999999887554
No 296
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=72.93 E-value=7.2 Score=32.49 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~f--rAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.+ .|.|-...++++.+++.|+++++++|++.|+.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 4588899999888 57788889999999999999999999999986
No 297
>PRK08639 threonine dehydratase; Validated
Probab=72.39 E-value=28 Score=36.88 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=54.6
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeC-ChHHHHHHHHHhhcCceeeEEEecCC
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted--~~iiTIVV~g-de~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
-+...+++.+.++||.|.+++......+.||..+.--...+ .+.+.+++.. +.+.++++...|++.= .+++++++
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 411 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP 411 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence 35678999999999999999994444444999886543222 2335555543 3467889999998854 35556666
Q ss_pred chhhh
Q 013068 154 EPHVE 158 (450)
Q Consensus 154 ~~~V~ 158 (450)
.+.++
T Consensus 412 ~~~~~ 416 (420)
T PRK08639 412 NEPLY 416 (420)
T ss_pred CHHHH
Confidence 66554
No 298
>PRK14420 acylphosphatase; Provisional
Probab=71.95 E-value=10 Score=31.94 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |.|=...++++.+++.|++++|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 16 GFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 46888999998876 6677778888999999999999999999985
No 299
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=71.88 E-value=17 Score=30.37 Aligned_cols=55 Identities=24% Similarity=0.494 Sum_probs=37.0
Q ss_pred EEEEEEEeccchHHH----HHHHHHhccCce-eeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHH
Q 013068 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (450)
Q Consensus 315 htLSilVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL 376 (450)
+...|.|..+||||. -|.+-..+.||+ |+++.+|. .+++.++++ .+.++++.+.|
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-------~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-------YIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-------EEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-------EEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 357889999999996 577778899999 99999985 477778766 23444444444
No 300
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=71.72 E-value=57 Score=37.93 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEEe
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV~ 167 (450)
+.||++.||.+.|.+.|+|++-++.+.++. -+.+++.. ...+.+.+.|+++-.. ..=.+++++++|-|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~--~~~~~~~~~l~~~~~~-------~~i~v~~~~a~VsvV 397 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTS--EVADSALKLLDDAALP-------GELKLREGLALVALV 397 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeH--HHHHHHHHHHHhhcCC-------CcEEEeCCeEEEEEe
Confidence 668999999999999999999997653322 34555542 2455566666664211 222467899999996
Q ss_pred CCCC-----CHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 168 GDTS-----TWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 168 ~~~~-----~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
-... --..++......+-+++..+...+-|-+.=+.+..+..++.|..
T Consensus 398 G~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH~ 450 (810)
T PRK09466 398 GAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450 (810)
T ss_pred CCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHHH
Confidence 6532 23467777777899999999888888777777777777777765
No 301
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=71.39 E-value=28 Score=36.82 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeC-ChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~iiTIVV~g-de~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
+...+++.+-++||.|.+++.+....+-||..+.-...... +.+.+.+.. +.+.++++.+.|++.= .+++++++.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~ 401 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINEN 401 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCCC
Confidence 56799999999999999999944445559997765543222 345555442 3467888888887754 355677776
Q ss_pred hhhhh
Q 013068 155 PHVER 159 (450)
Q Consensus 155 ~~V~R 159 (450)
+.++.
T Consensus 402 ~~~~~ 406 (409)
T TIGR02079 402 DILYN 406 (409)
T ss_pred HHHHH
Confidence 65553
No 302
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=71.13 E-value=15 Score=28.91 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL 139 (450)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL 139 (450)
+||++.|+...+++.|+|+..++.+.++ -.++++|+. +..+..++.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~L 60 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKAL 60 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHH
Confidence 7999999999999999999988877652 247777763 2334444444
No 303
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=70.81 E-value=22 Score=30.65 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCc---E--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCC
Q 013068 91 GIINRIAGVFARRGYNIESLAVGLNVDKA---L--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLsvg~ted~~---i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
.+..|+..+..+.|-+|.|..+-+....+ + +++.+.|+-..+.++...|+.-...+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 57889999999999999999998855543 2 667788999999999999999999999998763
No 304
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=70.65 E-value=22 Score=29.47 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=61.4
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccC--ceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRG--YNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRG--yNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..|++.+...|.++..+.|..+|.+.- ++-..+...++....+..+|+.+. .+.+++..+-+.|.+.-.|.-|
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 469999999999999999999999963 455667777888999999999987 6888999999999998888754
No 305
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=70.34 E-value=30 Score=34.04 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=50.3
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEE--EEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~ii--TIVV~gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
+.+.+..++. -+..+...|.+.++.|.++.....+++..+ ++.+. .+...+++..+|..+-+|.+|+
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 5555555443 468888999999999999998776655544 44454 3567888999999999998885
No 306
>PRK14445 acylphosphatase; Provisional
Probab=69.95 E-value=12 Score=31.65 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|=...++++.+++.|+++++++|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 56888999998876 6788888999999999999999999999974
No 307
>PRK14422 acylphosphatase; Provisional
Probab=69.74 E-value=13 Score=31.82 Aligned_cols=45 Identities=4% Similarity=-0.104 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|=...++++.+++-|++++|++|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 56889999999877 6688888899999999999999999999974
No 308
>PRK14436 acylphosphatase; Provisional
Probab=69.39 E-value=13 Score=31.52 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++-|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999998876 7788888889999999999999999999974
No 309
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=69.18 E-value=13 Score=29.28 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 324 ~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
+||++.|+...+++.|+|+..++-|+++ -+++++++. +..++.++.|++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~----~~is~~V~~--~~~~~av~~Lh~ 62 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDR--DDYDNAIKALHA 62 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe----eEEEEEEEH--HHHHHHHHHHHH
Confidence 7999999999999999999999888754 357788874 346666666654
No 310
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=68.56 E-value=23 Score=29.66 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=31.9
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC
Q 013068 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT 128 (450)
Q Consensus 80 ~tISVlVeN~pGVL~----RIagLFsRRGyN-IeSLsvg~ted~~iiTIVV~gd 128 (450)
+...|+|..+||+|. .|.+-+.+.||+ |.++.+|. ++++.+.++
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-----~~~l~~~~~ 49 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-----YIELELEAD 49 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-----EEEEEEE-S
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-----EEEEEEeCC
Confidence 457899999999995 678888999999 99988774 577777765
No 311
>PRK14428 acylphosphatase; Provisional
Probab=68.36 E-value=16 Score=31.73 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|+++.|++|++.|+.
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 56889999998876 6677888889999999999999999999974
No 312
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=67.38 E-value=29 Score=39.73 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=47.1
Q ss_pred EEEEEEE-cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe---CCh----HHHHHHHHHhhcCceee
Q 013068 80 HTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---GTE----RVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 80 ~tISVlV-eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~---gde----~~ieqL~kQL~KLiDVi 146 (450)
++++|.. -++||.|.|++|+++-.|.+|.|-.+.. +....-..+|. |.. .-.+++...+.--+++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 7899999 9999999999999999999999999877 44445444444 332 22334444555445544
No 313
>PRK09181 aspartate kinase; Validated
Probab=66.97 E-value=15 Score=39.95 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=64.8
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChhHHHhhheeE
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL~LIK 402 (450)
+.||++.||.+.|.+.|.||+.++.+. ..++++++.+.+.++++.+.|++...-..+. ..++++|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~------~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~--------~~~~a~Vs 406 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNA------NTITHYLWGSLKTLKRVIAELEKRYPNAEVT--------VRKVAIVS 406 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecC------cEEEEEEcCChHHHHHHHHHHHHhcCCceEE--------ECCceEEE
Confidence 679999999999999999999775442 5689999876445678888887655422221 26678887
Q ss_pred eecCccch----HHHHHHHHhcCcEEEEecCC
Q 013068 403 IAVNTAAR----RDVLDIAKIFRARAVDVSDH 430 (450)
Q Consensus 403 V~~~~~~R----~eI~~i~~iFrakIVDvs~~ 430 (450)
|--..-.+ ..+++.....+-+|.-++..
T Consensus 407 vVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 407 AIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred EeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 76544333 25666666667778555544
No 314
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.91 E-value=13 Score=28.87 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=34.9
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.+.||++.|+...+.+- ||.-+..+.++ .+++++++.+ ..++.++.|++
T Consensus 11 ~~~~gv~~~~~~~L~~~--~i~~i~~~~s~----~~is~vv~~~--d~~~av~~LH~ 59 (63)
T cd04920 11 RSLLHKLGPALEVFGKK--PVHLVSQAAND----LNLTFVVDED--QADGLCARLHF 59 (63)
T ss_pred ccCccHHHHHHHHHhcC--CceEEEEeCCC----CeEEEEEeHH--HHHHHHHHHHH
Confidence 47899999999999875 45555555543 3688888854 46666666654
No 315
>PLN02551 aspartokinase
Probab=66.63 E-value=11 Score=41.36 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--------HHHHHHHHHhcccCEEEEEecCCChhH
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHKLIDLHEVQDITHLPFA 394 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--------~ieQI~kQL~KLidVi~V~dlt~~~~V 394 (450)
+.||+++||.+.|.+.|+||+-++.+ + ..++++++.++. .++++...|+++. . -.+
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e----~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~---~-------V~v 441 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E----VSISLTLDPSKLWSRELIQQELDHLVEELEKIA---V-------VNL 441 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C----CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCC---e-------EEE
Confidence 67999999999999999999999643 2 458899986642 2233334444321 1 134
Q ss_pred HHhhheeEeecCccch----HHHHHHHHhcCcEEEEec
Q 013068 395 ERELILIKIAVNTAAR----RDVLDIAKIFRARAVDVS 428 (450)
Q Consensus 395 ~REL~LIKV~~~~~~R----~eI~~i~~iFrakIVDvs 428 (450)
.+.+++|-|--..... ..+++.....+.+|.-++
T Consensus 442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs 479 (521)
T PLN02551 442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS 479 (521)
T ss_pred eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE
Confidence 5677888876442222 255555566667774444
No 316
>PRK09084 aspartate kinase III; Validated
Probab=66.60 E-value=21 Score=38.35 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=59.4
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh-------HHHHHHHHHhcccCEEEEEecCCChhHH
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-------SIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~-------~ieQI~kQL~KLidVi~V~dlt~~~~V~ 395 (450)
++||+++|+...|++.|+||+-++.++ ..|+++++.++. ..+.+.+.|+++.. -.+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse------~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~----------i~~~ 381 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE------VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR----------VEVE 381 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC------cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe----------EEEE
Confidence 689999999999999999999998532 579999986542 22456666654221 1246
Q ss_pred HhhheeEeecCcc-ch----HHHHHHHHhcCcEEEEecCC
Q 013068 396 RELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDH 430 (450)
Q Consensus 396 REL~LIKV~~~~~-~R----~eI~~i~~iFrakIVDvs~~ 430 (450)
+.+++|.|--... .+ ..++......+-.++..+..
T Consensus 382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsS 421 (448)
T PRK09084 382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGAS 421 (448)
T ss_pred CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCC
Confidence 6788888865432 22 23444333334555554444
No 317
>PRK14433 acylphosphatase; Provisional
Probab=66.53 E-value=15 Score=30.89 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|+++.|++|++.|+.
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 46888899998876 7788889999999999999999999999984
No 318
>PRK14645 hypothetical protein; Provisional
Probab=66.38 E-value=18 Score=33.82 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=75.8
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-h-----HHHHHHHHHhhcCceeeEEEe----cC-Cc
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-E-----RVLRQVVEQLNKLVNVIKVED----IS-NE 154 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd-e-----~~ieqL~kQL~KLiDVi~V~d----lt-~~ 154 (450)
.+|+.-+-..+..+....||-+..+.+.......+++|.++.+ . +.++++.++|..++|+..... |. ..
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 3677788899999999999999999988776666788888742 2 567888899999999754311 00 02
Q ss_pred hhhhhhee-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChh
Q 013068 155 PHVERELM-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPG 204 (450)
Q Consensus 155 ~~V~RELa-----------LIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~ 204 (450)
|-++|.|- .+||+. =-+.|.|++.++.++.+++++-|..-
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~----------~~k~~~G~L~~~~d~~i~l~~~~~~~ 135 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRG----------PGENFTGRIKAVSGDQVTFDVGGEDR 135 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEc----------CCeEEEEEEEEEeCCEEEEEECCeEE
Confidence 33333331 244432 12567888999998998888765543
No 319
>PRK14449 acylphosphatase; Provisional
Probab=66.26 E-value=18 Score=30.55 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999998876 5677778889999999999999999999985
No 320
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=66.25 E-value=16 Score=39.68 Aligned_cols=71 Identities=15% Similarity=0.367 Sum_probs=56.3
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITHLP 392 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~~~ 392 (450)
|.|..+||.|+..-|..+|..+++|+.++-+.+. + +|-+-++. +.....++++++.++-.|..|..+...|
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 74 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---G--RIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMP 74 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---C--eEEEeCCCcChhhHHHHHHHHhcCCCccchhhhccCh
Confidence 6788999999999999999999999999998554 2 35555553 3445788999999999988886555443
No 321
>PRK14444 acylphosphatase; Provisional
Probab=66.00 E-value=18 Score=30.78 Aligned_cols=45 Identities=7% Similarity=-0.140 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|=...++++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 56888999998876 7788889999999999999999999999973
No 322
>PRK14427 acylphosphatase; Provisional
Probab=65.75 E-value=17 Score=31.00 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++-|++++|++|++.|+.
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 56889999998876 6788889999999999999999999999984
No 323
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=65.53 E-value=39 Score=29.07 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEE--EEeCChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 326 GVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITT--VVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 326 GVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTI--VV~gd~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
.+..|+..+....|-+|.|..+-+... .++.||.+ .+.|+-+.+.++...|+.--..+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 578899999999999999999998543 45665554 456999999999999999999999998873
No 324
>PRK14439 acylphosphatase; Provisional
Probab=65.23 E-value=16 Score=34.82 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fG 217 (450)
.-|.-+.++|+.++ |.|-...++++.+++.|++++|+.|++.|+..|
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 57889999999987 667788889999999999999999999998754
No 325
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=64.69 E-value=42 Score=28.39 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=56.6
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
..++.+++..-.+||.|-+....+..|. ||.-+.=--+.. +..++-+-+.- +.+.++++.+.|+++= ..+.|+|+
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~-~~a~vlvgi~v~~~~~~~~l~~~L~~~g--y~~~dls~ 83 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGD-DFARVLVGIEVPDAEDLEELIERLKALG--YPYEDLSD 83 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTT-SCSEEEEEEE-SSTHHHHHHHHHHTSSS---EEECTTT
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCC-CeeeEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCC
Confidence 4578999999999999999999987665 687777765544 67777777663 3455899999999985 67888888
Q ss_pred ChhHH
Q 013068 391 LPFAE 395 (450)
Q Consensus 391 ~~~V~ 395 (450)
.+...
T Consensus 84 ne~~k 88 (91)
T PF00585_consen 84 NELAK 88 (91)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 76543
No 326
>PRK14430 acylphosphatase; Provisional
Probab=64.57 E-value=19 Score=30.75 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 18 GYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 46888999998877 6677888889999999999999999999965
No 327
>PRK14423 acylphosphatase; Provisional
Probab=64.55 E-value=19 Score=30.58 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|++++|+.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 46888999998876 7788889999999999999999999999974
No 328
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=64.35 E-value=27 Score=28.74 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCce
Q 013068 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN 144 (450)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiD 144 (450)
.+|.-.+|..+++|.+.+|-+- +.+.+-+|+.+.++.+.++.+.+.|+|..+
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K----~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK----DTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE----ecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 4889999999999999999765 445567999999999999999999987653
No 329
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.85 E-value=16 Score=27.95 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=36.5
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.+.||+++|+...+++ ++|.-++-|.++ .+++++++.+ ..+++.+.|++
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s~----~~is~~V~~~--~~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGASN----HNLCFLVKEE--DKDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecCc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 3689999999999964 788877777653 3578888854 36777776665
No 330
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=63.45 E-value=57 Score=27.15 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcccCEEEEEecCCChhHHHhh-------heeEeecCccch----HHHHHHHHhcCcEEEEecCCEEEE
Q 013068 367 ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL-------ILIKIAVNTAAR----RDVLDIAKIFRARAVDVSDHTITL 434 (450)
Q Consensus 367 ~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL-------~LIKV~~~~~~R----~eI~~i~~iFrakIVDvs~~si~i 434 (450)
+....|.++-.+|-+++.|=--.=.+.+-.|+ -||||++....+ .-..+|++.-+|.+|++-.+++++
T Consensus 4 ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 4 KERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp HHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 45566677777777776665443334444443 267777655333 335678899999999999888875
No 331
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=63.32 E-value=23 Score=41.06 Aligned_cols=93 Identities=9% Similarity=0.108 Sum_probs=58.8
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHHhcccCEEEEEecCCChhHHH
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDLHEVQDITHLPFAER 396 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL~KLidVi~V~dlt~~~~V~R 396 (450)
.+.||+++||.+.|++.|.||+-++.++ ..++++++..+ +.++++.++|.++-.|. +.+
T Consensus 333 ~~~~g~~a~if~~la~~~I~Vd~I~sse------~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~----------~~~ 396 (861)
T PRK08961 333 WQQVGFLADVFTLFKKHGLSVDLISSSE------TNVTVSLDPSENLVNTDVLAALSADLSQICRVK----------IIV 396 (861)
T ss_pred cccccHHHHHHHHHHHcCCeEEEEEcCC------CEEEEEEccccccchHHHHHHHHHHHhhcCcEE----------EeC
Confidence 3689999999999999999999986432 56888888543 35667777776533322 224
Q ss_pred hhheeEeecCcc-ch----HHHHHHHHhcCcEEEEecCC
Q 013068 397 ELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDH 430 (450)
Q Consensus 397 EL~LIKV~~~~~-~R----~eI~~i~~iFrakIVDvs~~ 430 (450)
.+++|-|--..- ++ ..++......+..++-.+..
T Consensus 397 ~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsS 435 (861)
T PRK08961 397 PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASN 435 (861)
T ss_pred CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCc
Confidence 557776654322 12 24444444445555555543
No 332
>PRK14432 acylphosphatase; Provisional
Probab=63.05 E-value=20 Score=30.58 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEe-CChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVT-GDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvT-G~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ |.|-...++++.+++. |++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 45888888998776 7788888899999997 999999999999976
No 333
>PRK14435 acylphosphatase; Provisional
Probab=63.04 E-value=19 Score=30.44 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |.|-...++++.+++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 16 GFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred CChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 56888999998876 5567777889999999999999999999984
No 334
>PRK14447 acylphosphatase; Provisional
Probab=62.65 E-value=21 Score=30.46 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~-sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ |.|-...+. ++.+++.|++++|++|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~~ 65 (95)
T PRK14447 18 FFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWARV 65 (95)
T ss_pred cchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999999887 556666677 6999999999999999999973
No 335
>PRK14438 acylphosphatase; Provisional
Probab=62.52 E-value=21 Score=30.20 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++-|++++|++|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46888999998876 6788889999999999999999999999974
No 336
>PRK14442 acylphosphatase; Provisional
Probab=62.19 E-value=20 Score=30.43 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999998886 6688888889999999999999999999984
No 337
>PRK08841 aspartate kinase; Validated
Probab=62.11 E-value=14 Score=38.94 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=47.2
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidV 382 (450)
-.+++.=++.||++.|+...+++.|+||.+++.+ + -+|+++++.+ ..++.++.|++-...
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~----~~is~vv~~~--~~~~av~~lH~~f~~ 378 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P----QSSMLVLDPA--NVDRAANILHKTYVT 378 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C----cEEEEEEeHH--HHHHHHHHHHHHHcC
Confidence 3577777889999999999999999999887743 2 6688888754 578888888876544
No 338
>PRK14637 hypothetical protein; Provisional
Probab=61.88 E-value=40 Score=31.37 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCceeeE-EEecC---Cchhhhhh
Q 013068 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIK-VEDIS---NEPHVERE 160 (450)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiDVi~-V~dlt---~~~~V~RE 160 (450)
.-|--..+..+....||.+.-+.......+..++|.++.+ -+..+++.++|...+|+.- ..++. ..|-++|.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRp 86 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERV 86 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCC
Confidence 4577788899999999999999998877777899998854 3577888888887776421 11111 03334443
Q ss_pred e-----------eeEEEeCCCCCHHHHHHHHHhc-CcEEEEecCCEEEEEEeC
Q 013068 161 L-----------MLIKLNGDTSTWPEIMWLVDIF-RAKVVDISEHALTIEVTG 201 (450)
Q Consensus 161 L-----------aLIKV~~~~~~r~eI~~l~~~f-rAkIVDvs~~sl~iEvTG 201 (450)
| -++||.... + ..| .|.+.++.++.++++..|
T Consensus 87 L~~~~~f~r~~G~~V~V~l~~--~-------~~~~~G~L~~~~d~~v~l~~~~ 130 (151)
T PRK14637 87 IKNAAEFSIFVGETVKVWFEC--T-------GQWQVGTIAEADETCLVLTSDG 130 (151)
T ss_pred CCCHHHHHHhCCCEEEEEECC--C-------CcEEEEEEEEEeCCEEEEEECC
Confidence 3 235555421 1 236 599999999999999754
No 339
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.81 E-value=18 Score=42.05 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=38.5
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC
Q 013068 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK 118 (450)
Q Consensus 74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~ 118 (450)
+..-..+.+.+...|+||.|.+|+++|+.-+.+|.+..+..-.+.
T Consensus 786 t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GEr 830 (867)
T COG2844 786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGER 830 (867)
T ss_pred ccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccccc
Confidence 444578999999999999999999999999999999887654444
No 340
>PRK14441 acylphosphatase; Provisional
Probab=61.60 E-value=22 Score=30.25 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|=...++++.+++-|+++.|+.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46889999999877 6788888889999999999999999999974
No 341
>PRK14421 acylphosphatase; Provisional
Probab=61.58 E-value=25 Score=30.64 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|++++|++|++.|+.
T Consensus 18 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 18 GYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 46888999998776 6788888889999999999999999999974
No 342
>PRK09034 aspartate kinase; Reviewed
Probab=61.12 E-value=14 Score=39.68 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=44.3
Q ss_pred EEEE---EEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 316 TLSM---LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 316 tLSi---lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
.+++ -..+.||++.|+...+++.|+||.-++.+.++ -+++++|+.++ .++..+.|++-
T Consensus 387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se----~~Is~vV~~~d--~~~av~~LH~~ 447 (454)
T PRK09034 387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNED--AEKAVKAIYNA 447 (454)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc----ceEEEEEcHHH--HHHHHHHHHHH
Confidence 3555 34588999999999999999999999876654 67888888543 56666666653
No 343
>PRK14451 acylphosphatase; Provisional
Probab=60.68 E-value=23 Score=30.01 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|++++|++|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 46888889998876 5677788889999999999999999999985
No 344
>PRK14440 acylphosphatase; Provisional
Probab=60.56 E-value=24 Score=29.89 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |-|-...++++.+++.|++++++.|++.|+.
T Consensus 17 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 56888999998876 5677778889999999999999999999985
No 345
>PRK14448 acylphosphatase; Provisional
Probab=59.81 E-value=24 Score=29.83 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++-|++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 46888899998876 6677888889999999999999999999985
No 346
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=59.39 E-value=31 Score=28.44 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhcCcEEE--EecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 172 TWPEIMWLVDIFRAKVV--DISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 172 ~r~eI~~l~~~frAkIV--Dvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
--.+|+++...|+.++| |.+.++++.=++|+...++.+.+.|++
T Consensus 17 ~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~ 62 (71)
T cd04910 17 YDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLEN 62 (71)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHH
Confidence 45689999999999996 568899999999999999999999954
No 347
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=58.29 E-value=43 Score=35.48 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=60.7
Q ss_pred chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc---ccCEEEEEecCCChhHHHhhhee
Q 013068 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK---LIDLHEVQDITHLPFAERELILI 401 (450)
Q Consensus 325 pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K---LidVi~V~dlt~~~~V~REL~LI 401 (450)
||++.||...|++.|+||+.++.+.++ ..++++++.++ .+...+.|.+ ...+..+ .+.+.+++|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se----~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~V 381 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE----TSISFTVDKED--ADQAKTLLKSELNLSALSSV-------EVEKGLAKV 381 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC----ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceE-------EEcCCeEEE
Confidence 899999999999999999999754443 33888887543 4444544443 2233222 245567888
Q ss_pred EeecCc-----cchHHHHHHHHhcCcEEEEec
Q 013068 402 KIAVNT-----AARRDVLDIAKIFRARAVDVS 428 (450)
Q Consensus 402 KV~~~~-----~~R~eI~~i~~iFrakIVDvs 428 (450)
.|.... ..-.++++.....+-+|.-++
T Consensus 382 svvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 382 SLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred EEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 884322 223578888888888887774
No 348
>PRK14425 acylphosphatase; Provisional
Probab=58.18 E-value=29 Score=29.62 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |.|-...++++.+++-|+.++|+.|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 56888999998876 5677778889999999999999999999985
No 349
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.92 E-value=2e+02 Score=28.36 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=57.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeee--cC-CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~--te-d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
.....+++-|+|--....+|..+-.+.|-.|++-.... .. +....+|++.-+.+.++....+|.++=.|..-.
T Consensus 49 i~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~ 124 (262)
T PF14257_consen 49 IKTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRN 124 (262)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeee
Confidence 45679999999999999999999999998899998762 22 222355555556778999999999887665544
No 350
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=57.57 E-value=58 Score=29.34 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=63.2
Q ss_pred HHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhee----
Q 013068 96 IAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM---- 162 (450)
Q Consensus 96 IagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~RELa---- 162 (450)
|..+....||.+..+.+.......++++.++.+ -+.++++.+.+..++|+..... |. ..|-++|.|-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~ 81 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRD 81 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHH
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHH
Confidence 456778899999999998887777789988653 2567778888888888833210 00 0333444442
Q ss_pred -------eEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 013068 163 -------LIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (450)
Q Consensus 163 -------LIKV~~~--~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~K 205 (450)
.++|... ... -+.|.|++++++++++++++.|...+
T Consensus 82 ~~~~iG~~v~v~~~~~~~~-------~~~~~G~L~~~~~~~i~l~~~~~~~~ 126 (141)
T PF02576_consen 82 FERFIGRKVKVKLKQPVNG-------RKEFEGKLLEVDEDEITLEVEGKGKK 126 (141)
T ss_dssp HHHH-SEEEEEE-SS-SSS--------SEEEEEEEEEETTEEEEEEE-SS-E
T ss_pred HHHhcCCeEEEEEeccCCC-------cEEEEEEEEEEeCCEEEEEECCccce
Confidence 3455442 122 14688999999999999999987543
No 351
>PRK05783 hypothetical protein; Provisional
Probab=56.89 E-value=49 Score=28.25 Aligned_cols=60 Identities=7% Similarity=0.092 Sum_probs=42.0
Q ss_pred eEEEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-hH-HHHHHHHHhhcC
Q 013068 78 KRHTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-ER-VLRQVVEQLNKL 142 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~----RIagLFsRRGyN-IeSLsvg~ted~~iiTIVV~gd-e~-~ieqL~kQL~KL 142 (450)
|.+...|+|..|||+|. -|.+-+.++||+ +.++.+|. ++.+.++++ ++ ..+++.+-.+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK-----~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGK-----YLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeE-----EEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45789999999999995 688888888985 77776653 577877754 33 334444444555
No 352
>PRK14446 acylphosphatase; Provisional
Probab=56.64 E-value=22 Score=30.18 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...+.++.+++.|+++.++.|++.|+.
T Consensus 16 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 16 WYRASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred eEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 35788889998876 5678888899999999999999999999984
No 353
>PRK14443 acylphosphatase; Provisional
Probab=56.28 E-value=34 Score=29.44 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-...++++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 18 GFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred cCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 46888889998876 6678888999999999999999999999976
No 354
>PRK14450 acylphosphatase; Provisional
Probab=56.20 E-value=30 Score=29.19 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHA-LTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~s-l~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |.|-...+++ +.+++.|+++.++.|++.|+.
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999998876 6677777775 999999999999999999984
No 355
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=55.95 E-value=69 Score=37.28 Aligned_cols=100 Identities=10% Similarity=0.027 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChhHHHhhheeE
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL~LIK 402 (450)
+.||++.||.+.|.+.|+|++-++.+..+. .+.++++.+ ..+.+.+.|+++-. ...=.+++++++|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~----sis~~i~~~--~~~~~~~~l~~~~~-------~~~i~v~~~~a~Vs 395 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ----LLQLAYTSE--VADSALKLLDDAAL-------PGELKLREGLALVA 395 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc----EEEEEEeHH--HHHHHHHHHHhhcC-------CCcEEEeCCeEEEE
Confidence 568999999999999999999998664332 567777633 56677777776521 12224678899988
Q ss_pred eecCcc-c----hHHHHHHHHhcCcEEEEecCCEEEEE
Q 013068 403 IAVNTA-A----RRDVLDIAKIFRARAVDVSDHTITLE 435 (450)
Q Consensus 403 V~~~~~-~----R~eI~~i~~iFrakIVDvs~~si~iE 435 (450)
|--..- + -..++......+-+++..+...+-|-
T Consensus 396 vVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis 433 (810)
T PRK09466 396 LVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLV 433 (810)
T ss_pred EeCCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEE
Confidence 865542 1 23667666677888888877665553
No 356
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=55.65 E-value=41 Score=28.82 Aligned_cols=58 Identities=24% Similarity=0.476 Sum_probs=41.9
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeC-ChHHHHHHHH-HhhcC
Q 013068 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSG-TERVLRQVVE-QLNKL 142 (450)
Q Consensus 80 ~tISVlVeN~pGVL~----RIagLFsRRGyN-IeSLsvg~ted~~iiTIVV~g-de~~ieqL~k-QL~KL 142 (450)
+...|.|..|||||. -|.+.+.+.||+ +..+.+| ..|.+.+++ +++..++.++ -.+||
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g-----K~~el~ld~~~~e~a~~~v~~mcekL 66 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVG-----KVIELELDAESEEKAEEEVKEMCEKL 66 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeee-----eEEEEEecCcchhHHHHHHHHHHHHH
Confidence 567899999999995 788999999998 8877765 358888876 3434444444 33343
No 357
>PRK02047 hypothetical protein; Provisional
Probab=55.60 E-value=88 Score=26.71 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=52.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCce--eeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceee
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYN--IESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyN--IeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi 146 (450)
..+.+.+...|.++....|..++.++... -++++.-++..... +|+.+. .+++.++.|=+.|.+.-.|.
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVK 88 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 46899999999999999999999998555 45576666655544 444433 45678888888888877774
No 358
>PRK05925 aspartate kinase; Provisional
Probab=55.16 E-value=2.5e+02 Score=30.44 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh---HHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEE
Q 013068 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE---RVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165 (450)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde---~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIK 165 (450)
.+|.++||.+.|.+.|+||+.++... .-++++++.++ ..++.|.+.+.++ .+++ ++..+++|-
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~----~sis~~i~~~~~~~~~~~~l~~~l~~~---~~i~-------~~~~~a~Vs 376 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN----LGVYFTIDDDDISEEYPQHLTDALSAF---GTVS-------CEGPLALIT 376 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC----CEEEEEEechhccHHHHHHHHHHhcCC---ceEE-------EECCEEEEE
Confidence 57889999999999999999886331 23666666432 2344444444432 1222 456788888
Q ss_pred EeCCCCC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 166 LNGDTST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 166 V~~~~~~----r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
|--.... -..++......+-+|.-++....-|-+.=+.+..+..++.|.
T Consensus 377 vVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~LH 429 (440)
T PRK05925 377 MIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLH 429 (440)
T ss_pred EeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHHH
Confidence 8654322 234555556667788888777666666666666666666554
No 359
>PRK14640 hypothetical protein; Provisional
Probab=54.97 E-value=1.6e+02 Score=27.34 Aligned_cols=106 Identities=12% Similarity=0.232 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhe
Q 013068 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (450)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~REL 161 (450)
-+...+..+....||-+..+.........+++|.++.+ -+..+.+.++|..++|+..... |. ..|-++|.|
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL 86 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPL 86 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcC
Confidence 34556778889999999999988776667789888754 3678888899999999753210 00 034444444
Q ss_pred e-----------eEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 013068 162 M-----------LIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (450)
Q Consensus 162 a-----------LIKV~~~--~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~ 203 (450)
- .+||+.. ...+ +.|.|++.++.++.+++++-|..
T Consensus 87 ~~~~~f~r~~G~~v~V~l~~~~~~~-------k~~~G~L~~v~~~~v~l~~~~~~ 134 (152)
T PRK14640 87 FKVAQFEKYVGQEAAVTLRMATNNR-------RKFKGVIKAVQGDMITLTVDGKD 134 (152)
T ss_pred CCHHHHHHhCCCeEEEEEecccCCc-------eEEEEEEEEEeCCEEEEEECCeE
Confidence 2 3566542 1222 67999999999999999987764
No 360
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=54.67 E-value=43 Score=27.26 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=46.7
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHH-HHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKM-VAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~---~sl~iEvTG~~~KI-dafi~~L~~ 215 (450)
++.+.|.++.+.-..|+..+...||.|++... +...++..-....+ ..|...|+.
T Consensus 3 i~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 45677888888889999999999999999865 57889999999998 688887775
No 361
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=54.55 E-value=49 Score=34.88 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=33.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeee
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL 114 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ 114 (450)
..+.-|--+-+..||+|.+|..+|+-|.+|+.+|..-|
T Consensus 279 l~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP 316 (377)
T KOG2797|consen 279 LFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRP 316 (377)
T ss_pred cceeeEEEEeecCCchHHHHHHHHHhhhceeeeeeccc
Confidence 34445666689999999999999999999999999887
No 362
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.87 E-value=38 Score=25.84 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=33.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhh
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~ 140 (450)
..+.||++.|+...|++ +||.-++-+.+ +-.++++|+.+ ..+.+.+-|.
T Consensus 11 ~~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~~is~~V~~~--~~~~a~~~Lh 59 (64)
T cd04917 11 ISETAGVEKRIFDALED--INVRMICYGAS--NHNLCFLVKEE--DKDEVVQRLH 59 (64)
T ss_pred ccCCcCHHHHHHHHHHh--CCeEEEEEecC--ccEEEEEEeHH--HHHHHHHHHH
Confidence 34689999999999964 78887776655 33477888743 2444444443
No 363
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.83 E-value=1.3e+02 Score=24.96 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=56.6
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChhH
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V 394 (450)
+.+.+..--+||.|-+....+. .+.||.-..=--... +..++-+-+.-.+..++++.++|+++= ..+.|+++.+..
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~-~~a~vlvGi~~~~~~~~~l~~~l~~~g--~~~~dls~ne~~ 77 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGS-DYGRVLVGIQVPDADLDELKERLDALG--YPYQEETDNPAY 77 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCC-CceeEEEEEEeChHHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 6788888899999999999994 378887776655443 566676666633338899999999864 567778876554
No 364
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=53.75 E-value=81 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=23.8
Q ss_pred eEEEeCCCCC----HHHHHHHHHhcCcEEEEecCCEEEE
Q 013068 163 LIKLNGDTST----WPEIMWLVDIFRAKVVDISEHALTI 197 (450)
Q Consensus 163 LIKV~~~~~~----r~eI~~l~~~frAkIVDvs~~sl~i 197 (450)
||||++.... +.-..+|++..+|.+|++-.+++++
T Consensus 44 LvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 44 LVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp EEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred eeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 4555554322 3345667899999999999888875
No 365
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=53.61 E-value=43 Score=28.70 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=36.3
Q ss_pred EEEEEEEeccchHHH----HHHHHHhccCce-eeeeeeeecCCCCeeEEEEEEeC
Q 013068 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPG 364 (450)
Q Consensus 315 htLSilVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~te~~~iSRiTIVV~g 364 (450)
+...+.|..+||||+ -|.+-+.+.||+ +..+.+|- .|.|.+++
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK-------~~el~ld~ 49 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGK-------VIELELDA 49 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeee-------EEEEEecC
Confidence 567899999999995 688899999999 99888874 47788876
No 366
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=53.44 E-value=43 Score=29.58 Aligned_cols=56 Identities=30% Similarity=0.514 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhccC--ceeeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHhhcCcee
Q 013068 90 SGIINRIAGVFARRG--YNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNV 145 (450)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLsvg~ted-~~iiTIVV~-gde~~ieqL~kQL~KLiDV 145 (450)
.|+|+|+-.+.-..| |.|..+.+|.+.+ ++...|.|. .+++.+++|..+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 689999998776665 8999999997654 466677666 4678899999988877555
No 367
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=53.17 E-value=69 Score=27.06 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=52.3
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
...++.+++..-.+||.|.+....+..+. ||.-+.=--+. +.+. +-|-+.. .+.++.+.+.|+++= ..+.|+|
T Consensus 7 ~~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~~-~~~~~~l~~~L~~~g--y~~~dls 82 (91)
T PF00585_consen 7 EGREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVPD-AEDLEELIERLKALG--YPYEDLS 82 (91)
T ss_dssp H--EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-SS-THHHHHHHHHHTSSS---EEECTT
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeCC-HHHHHHHHHHHHHcC--CCeEECC
Confidence 35678999999999999999999987765 68777765443 3455 4444544 345899999999884 6777888
Q ss_pred Cchhhh
Q 013068 153 NEPHVE 158 (450)
Q Consensus 153 ~~~~V~ 158 (450)
+.+...
T Consensus 83 ~ne~~k 88 (91)
T PF00585_consen 83 DNELAK 88 (91)
T ss_dssp T-HHHH
T ss_pred CCHHHH
Confidence 876543
No 368
>PRK14646 hypothetical protein; Provisional
Probab=52.32 E-value=1.7e+02 Score=27.32 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhh
Q 013068 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVER 159 (450)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd------e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~R 159 (450)
-+...+..+....||-+..+.......+.+++|.++.+ =+..+.+.+++..++|+..... |. ..|-++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR 87 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC
Confidence 45667888899999999999988777777788888743 2567888899999999653311 00 0344444
Q ss_pred he-----------eeEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 013068 160 EL-----------MLIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (450)
Q Consensus 160 EL-----------aLIKV~~--~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~ 203 (450)
.| -.+||+. .... -+.|.|.+.++.++.+++++-|..
T Consensus 88 pL~~~~df~r~~G~~v~V~l~~~~~~-------~~~~~G~L~~~~~~~v~l~~~g~~ 137 (155)
T PRK14646 88 ELTSERDFKTFKGFPVNVELNQKNSK-------IKFLNGLLYEKSKDYLAINIKGKI 137 (155)
T ss_pred cCCCHHHHHHhCCCEEEEEEecCcCC-------eEEEEEEEEEEeCCEEEEEECCEE
Confidence 44 2455544 2222 267899999999999999987653
No 369
>PRK14637 hypothetical protein; Provisional
Probab=52.15 E-value=87 Score=29.18 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEE-EEecC---CChhHHHh
Q 013068 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE-VQDIT---HLPFAERE 397 (450)
Q Consensus 324 ~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~-V~dlt---~~~~V~RE 397 (450)
.-|--..+..+....||.+.-+.......+.+-|+.|=-++ +-+..+++.++|...+|+.- ..+++ .+|=++|.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRp 86 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERV 86 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCC
Confidence 34667788889999999999999988777778777664332 44568889999887776421 11111 12333333
Q ss_pred h-----------heeEeecCccchHHHHHHHHhc-CcEEEEecCCEEEEEEcCCchhh
Q 013068 398 L-----------ILIKIAVNTAARRDVLDIAKIF-RARAVDVSDHTITLEVNPINNIC 443 (450)
Q Consensus 398 L-----------~LIKV~~~~~~R~eI~~i~~iF-rakIVDvs~~si~iE~TG~~ek~ 443 (450)
| -++||.... + ..| .|.+.++..+.++++..|..-++
T Consensus 87 L~~~~~f~r~~G~~V~V~l~~--~-------~~~~~G~L~~~~d~~v~l~~~~~~~~i 135 (151)
T PRK14637 87 IKNAAEFSIFVGETVKVWFEC--T-------GQWQVGTIAEADETCLVLTSDGVPVTI 135 (151)
T ss_pred CCCHHHHHHhCCCEEEEEECC--C-------CcEEEEEEEEEeCCEEEEEECCEEEEE
Confidence 3 245555421 1 236 69999999999999976654444
No 370
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=52.14 E-value=66 Score=35.26 Aligned_cols=73 Identities=8% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC----CeeEEEEEEeCChhHHHHHHHHHhcccCEE
Q 013068 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE----GLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (450)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~----~iSRiTIVV~gd~~~ieQI~kQL~KLidVi 383 (450)
..+....+++--++ +|-|.++..+|...+.||.-|.--++... ..-.+.+-++++...+.++++-|.+-....
T Consensus 35 ~~~~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 111 (457)
T TIGR01269 35 AAMQNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFIS 111 (457)
T ss_pred ccceeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhccc
Confidence 33444455544444 99999999999999999999887775432 234455556678888999999998765543
No 371
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.31 E-value=63 Score=25.03 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=31.1
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL 139 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL 139 (450)
+.+.||++.|+...|.+-+ |.-++.+.+ +-.++++++++ ..+++++.|
T Consensus 10 ~~~~~gv~~~~~~~L~~~~--i~~i~~~~s--~~~is~vv~~~--d~~~av~~L 57 (63)
T cd04920 10 IRSLLHKLGPALEVFGKKP--VHLVSQAAN--DLNLTFVVDED--QADGLCARL 57 (63)
T ss_pred cccCccHHHHHHHHHhcCC--ceEEEEeCC--CCeEEEEEeHH--HHHHHHHHH
Confidence 3478999999999998854 544555444 23588888753 334444433
No 372
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=51.29 E-value=16 Score=31.32 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=23.2
Q ss_pred hcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 013068 182 IFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 182 ~frAkIVDvs~~-sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.+.++..+.+.+ -++||+..+++|+++|++.|++
T Consensus 52 ih~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~ 86 (101)
T PF02641_consen 52 IHSARLLELSDDLPVVIEFIDTEEKIEAFLPELKE 86 (101)
T ss_dssp ---------TTS-EEEEEEEEEHHHHHHHHHHHCT
T ss_pred ccccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHH
Confidence 455777788877 8899999999999999999985
No 373
>PRK14636 hypothetical protein; Provisional
Probab=51.20 E-value=1.5e+02 Score=28.36 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh------HHHHHHHHHhhcCceeeEEE--------------
Q 013068 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE------RVLRQVVEQLNKLVNVIKVE-------------- 149 (450)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde------~~ieqL~kQL~KLiDVi~V~-------------- 149 (450)
+-+...+..+....||-+..+.+-....+..++|.++.++ +.++.+.++|..++|+....
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 3456678888999999999999866656667888886432 67888999999999965321
Q ss_pred -ecCCchhhhhhe-eeEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 013068 150 -DISNEPHVEREL-MLIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (450)
Q Consensus 150 -dlt~~~~V~REL-aLIKV~~--~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvT 200 (450)
-|+...+..|-. =++||.+ +...+ +.|.|+++++..+.+++++-
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~~~g~-------k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEPLDGR-------KQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEecccCCe-------EEEEEEEEEEeCCEEEEEEc
Confidence 122233333332 2345543 22222 56889999999999999873
No 374
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=51.10 E-value=44 Score=27.01 Aligned_cols=55 Identities=5% Similarity=0.076 Sum_probs=46.2
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~---~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
++.+.|.++.+.-..|+..+..-||++.+... +...|+....-.++..|-..|+.
T Consensus 3 i~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 3 IEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 35677788888889999999999999999866 46889999998888888887765
No 375
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.99 E-value=44 Score=39.09 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=34.4
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE 351 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te 351 (450)
+.+++.+...|+||.|++++++|+.-|.+|.|-.+..-.
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~G 828 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccc
Confidence 357999999999999999999999999999997765543
No 376
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=50.85 E-value=53 Score=24.78 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHh
Q 013068 172 TWPEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNL 213 (450)
Q Consensus 172 ~r~eI~~l~~~frAkIVDvs~~--sl~iEvTG~~~KIdafi~~L 213 (450)
....|.+|-+.++++ +.+.++ .-.+.++|+++.++...+.+
T Consensus 18 ~G~~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 18 KGSNIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp GGHHHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCCcHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 345788999999999 667654 77999999999999887753
No 377
>PRK14452 acylphosphatase; Provisional
Probab=50.75 E-value=42 Score=29.66 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |.|-...++++.+++.|+++++++|++.++.
T Consensus 34 GFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 34 GFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred ChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 57889999998886 5677888889999999999999999998876
No 378
>PRK05783 hypothetical protein; Provisional
Probab=50.55 E-value=63 Score=27.58 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=41.9
Q ss_pred eEEEEEEEEeccchHHH----HHHHHHhccCce-eeeeeeeecCCCCeeEEEEEEeCCh-h-HHHHHHHHHhcc
Q 013068 313 RSHTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGTD-E-SIGKLVQLLHKL 379 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd~-~-~ieQI~kQL~KL 379 (450)
|.+...|.|..+||||. -|.+-+.++||+ ++++.+|- .|.+.+++++ + ..+++.+-.+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK-------~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGK-------YLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeE-------EEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 35789999999999995 577777778884 88888875 3667777643 3 234444444565
No 379
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=49.96 E-value=62 Score=37.57 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=77.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCc----eeeEEEecCCchhhhhhe
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV----NVIKVEDISNEPHVEREL 161 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLi----DVi~V~dlt~~~~V~REL 161 (450)
+.++||++.|+...|++.|+||+-++.+.++ --++++++.++ .+..++-|++-. .-..+. .-.+...+
T Consensus 325 m~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~d--~~~av~~L~~~f~~el~~~~~~----~i~~~~~v 396 (819)
T PRK09436 325 MKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQSD--AAKAKRALEEEFALELKEGLLE----PLEVEENL 396 (819)
T ss_pred CCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHHhccCCcc----eEEEeCCE
Confidence 4578999999999999999999988866433 23777777432 333333333311 100011 11245678
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068 162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 162 aLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
++|.|-... .--..++......+.+|.-++ .....|-+.=+.+..+..++.|..
T Consensus 397 alIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~ 457 (819)
T PRK09436 397 AIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQ 457 (819)
T ss_pred EEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHH
Confidence 999886543 223467777777788886554 555566666666777788888775
No 380
>PRK14437 acylphosphatase; Provisional
Probab=49.96 E-value=40 Score=29.81 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ |.|-...++++.+++.|+++.|+.|++.|+.
T Consensus 37 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 37 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred CchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 57889999998886 5678888889999999999999999999984
No 381
>PRK06291 aspartate kinase; Provisional
Probab=49.81 E-value=26 Score=37.62 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChhHHHhhheeE
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL~LIK 402 (450)
+.||+++|+...|++.|+|++-++.+.++ ..++++++.+ ..++..+.|++...=. .-..=.+..++++|.
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse----~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Is 402 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE----SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVA 402 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEE
Confidence 78999999999999999999999877544 5688888853 3445555555422100 011123456788888
Q ss_pred eecCcc-----chHHHHHHHHhcCcEEEEec
Q 013068 403 IAVNTA-----ARRDVLDIAKIFRARAVDVS 428 (450)
Q Consensus 403 V~~~~~-----~R~eI~~i~~iFrakIVDvs 428 (450)
|.-... .-..++......+.+|.-++
T Consensus 403 vvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 403 VVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred EEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 865432 12356666666677785554
No 382
>PRK14424 acylphosphatase; Provisional
Probab=48.65 E-value=47 Score=28.58 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|=...++++-|++.|++++|+.|++.|+.
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 56888999998876 5577777788999999999999999999985
No 383
>PRK14634 hypothetical protein; Provisional
Probab=47.46 E-value=2.4e+02 Score=26.31 Aligned_cols=106 Identities=9% Similarity=0.215 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh------HHHHHHHHHhhcCceeeEEEe----cC-Cchhhh
Q 013068 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE------RVLRQVVEQLNKLVNVIKVED----IS-NEPHVE 158 (450)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde------~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~ 158 (450)
.-+-..+..+....||-+..+.+.......++++.++.++ +.++.+.++|..+.|+..... |. ..|-++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 3455667778889999999999877666667888887422 467888889999999653210 00 033344
Q ss_pred hhee-----------eEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 013068 159 RELM-----------LIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (450)
Q Consensus 159 RELa-----------LIKV~~--~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~ 202 (450)
|.|- ++||+. +...+ +.|.|+++++.++.+++++-|.
T Consensus 87 RpL~~~~~f~r~~G~~V~V~l~~~~~~~-------k~~~G~L~~~~~~~v~l~~~~~ 136 (155)
T PRK14634 87 DQLSSDRDFQTFRGFPVEVSHRDDDGSE-------QRLEGLLLERNEDHLQINIRGR 136 (155)
T ss_pred CcCCCHHHHHHhCCCeEEEEEecCCCCe-------EEEEEEEEEEeCCEEEEEECCE
Confidence 4331 244443 22222 5789999999999999998654
No 384
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=46.78 E-value=55 Score=28.78 Aligned_cols=39 Identities=23% Similarity=0.505 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh
Q 013068 328 LNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD 366 (450)
Q Consensus 328 L~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~ 366 (450)
++--..-+.+|||+++-+...+++..|+.+.|+.|.|..
T Consensus 69 ~~MY~~~a~~~gw~~~~l~~~~~~~~G~k~a~~~I~G~~ 107 (115)
T PF03462_consen 69 FRMYQRYAERRGWKVEVLDYSPGEEGGIKSATLEISGEG 107 (115)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEE-SSSSEEEEEEEEESTT
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccceeEEEEEEEcCC
Confidence 455566677999999999999999999999999999873
No 385
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=45.72 E-value=1.7e+02 Score=24.05 Aligned_cols=70 Identities=27% Similarity=0.350 Sum_probs=52.7
Q ss_pred EEEEEEcCc-hhHHHHHHHHHhccC-ceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 81 TISVFVGDE-SGIINRIAGVFARRG-YNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 81 tISVlVeN~-pGVL~RIagLFsRRG-yNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
+|++.-+.+ +++..|++.+--... .=+.++.+-..++.-+=.+++.|+-+.++.+.+.|.++-.|..+..
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 455555544 789999999977665 4455555555544445677899999999999999999999988764
No 386
>PRK00907 hypothetical protein; Provisional
Probab=45.49 E-value=1.6e+02 Score=25.52 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCc--eeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceee
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGY--NIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGy--NIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi 146 (450)
..+.|.|.-.++++....|..++.+.+- +=.++++-++....+ +|+.+. ..++.++.|=+.|.+.-.|.
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 3689999999999999999999998765 455666666655544 455443 34678999999988877763
No 387
>PRK14431 acylphosphatase; Provisional
Probab=45.26 E-value=73 Score=27.01 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|..++ +.|-... +++.+++.|+++.|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~~-dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 16 GFRYFTQRIAMNYNIVGTVQNVD-DYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred eEhHHHHHHHhhcCCEEEEEECC-CcEEEEEEcCHHHHHHHHHHHhc
Confidence 35788888998876 4455554 47999999999999999999986
No 388
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=44.76 E-value=81 Score=26.03 Aligned_cols=54 Identities=17% Similarity=0.409 Sum_probs=35.6
Q ss_pred EEEEEEeccchHHHH----HHHHHhccCce-eeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHH
Q 013068 316 TLSMLVNNTPGVLNI----VTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (450)
Q Consensus 316 tLSilVeN~pGVL~R----ItgLFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL 376 (450)
...|.|..+|||+.- |..-....||+ ++++.+|. .+++.++|++ +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-------VIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346778899999865 44545557998 88876664 3666667654 4456665554
No 389
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=44.68 E-value=1.1e+02 Score=27.31 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=70.8
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc--CceeeEEEecCCchhhhhheeeEE
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK--LVNVIKVEDISNEPHVERELMLIK 165 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K--LiDVi~V~dlt~~~~V~RELaLIK 165 (450)
|+|=-..||=..+..-||+|+ +. ...+.....++++|.+ .+. +.|.-|-++
T Consensus 20 ~rP~p~~~IE~Am~e~~~~v~-----p~----------ksak~QalevIk~L~~~~~ip------------I~ra~m~l~ 72 (125)
T PF09377_consen 20 NRPYPPTRIEKAMKEAHFSVD-----PN----------KSAKQQALEVIKKLKEKQIIP------------IKRAKMRLR 72 (125)
T ss_dssp TBTT-HHHHHHHHHHTTS-SS-----TT----------S-HHHHHHHHHHHHTT--TS--------------EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhCCcccC-----CC----------CCHHHHHHHHHHHHHHhCCCc------------eeeeeEEEE
Confidence 344455566666666666643 11 1345667778888876 443 678889999
Q ss_pred EeCCCCCHHHHHHHHHhcCcEEEE--ecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 166 LNGDTSTWPEIMWLVDIFRAKVVD--ISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 166 V~~~~~~r~eI~~l~~~frAkIVD--vs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
|.++.+....+......+.+.+.+ .+.++..+.+.=+|+.-+.|.+.+++
T Consensus 73 v~ip~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v~~ 124 (125)
T PF09377_consen 73 VTIPSKYAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELVNK 124 (125)
T ss_dssp EEEBCCCHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHHcc
Confidence 999999999998888888887743 47888899998889888888887753
No 390
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=44.14 E-value=94 Score=34.11 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=50.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-----E-EEEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-----L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-----i-iTIVV~gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
....+++-.++ +|.|.++..+|...++||.-|---++.... . +.+-++++...++++++-|.+-.....+.
T Consensus 38 ~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (457)
T TIGR01269 38 QNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGIN 114 (457)
T ss_pred eeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcccccc
Confidence 33344444333 999999999999999999998877654222 2 55556677888999999888765544333
No 391
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=43.79 E-value=52 Score=35.89 Aligned_cols=67 Identities=10% Similarity=0.299 Sum_probs=52.6
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHhhcCceeeEEEec
Q 013068 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g-de~~ieqL~kQL~KLiDVi~V~dl 151 (450)
|.|.-+|+.|+..-|..+|..+++|+.++-+.+. ++|-+-+.. +.....+++.++.++-.|..|...
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 70 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTV 70 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhh
Confidence 6788899999999999999999999999998443 555444442 234578899999888888887543
No 392
>PRK14632 hypothetical protein; Provisional
Probab=43.75 E-value=1.7e+02 Score=27.86 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhee
Q 013068 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM 162 (450)
Q Consensus 92 VL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~RELa 162 (450)
+-..+.-+....||-+..+.+.. ....+++|.++.+ -+..+.+.++|..++|+..... |. ..|-+.|.|-
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~ 88 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFF 88 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCC
Confidence 34556677889999999999874 3444688888753 3678889999999999754321 00 0334444442
Q ss_pred -----------eEEEeCCC-CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 013068 163 -----------LIKLNGDT-STWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (450)
Q Consensus 163 -----------LIKV~~~~-~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~ 202 (450)
++||.... ... ..=-+.|.|+++++.++.+++++-|.
T Consensus 89 ~~~~f~r~iG~~V~V~l~~~~~~---~~g~k~~~G~L~~v~~~~i~l~~~~~ 137 (172)
T PRK14632 89 RAEQMSPYVGRQIELTLIDPTPE---WPGRRKFRGELLAVEGDTVVLRPEGA 137 (172)
T ss_pred CHHHHHHhCCCEEEEEEeccccc---cCCceEEEEEEEEEeCCEEEEEEcCc
Confidence 46665432 100 00126799999999999999998654
No 393
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=43.53 E-value=2.7e+02 Score=25.66 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=71.7
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhe
Q 013068 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (450)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g----de~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~REL 161 (450)
-+-..+..+....||.+..+.+.....+.+++|.++. +-+.++.+.+.+...+|+..... |. ..|-+.|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 3556778889999999999999887777789999884 34677888889988888653210 00 033334433
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 013068 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (450)
Q Consensus 162 a-----------LIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~ 202 (450)
- +++|..... ..=-+.|.|+++++.++.++++.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~-----~~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEP-----IDGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEcc-----cCCceEEEEEEEEeeCCEEEEEECCC
Confidence 3 255543210 01115678899999999999998765
No 394
>PRK04998 hypothetical protein; Provisional
Probab=43.48 E-value=1.6e+02 Score=24.72 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=47.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceee
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi 146 (450)
..+.+.+...+.++..+.|..+|.+..-.-+.++.-++..... +|+.+. .+++.++.|=+.|.+.-.|+
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 4589999999999999999999977633323344444433333 444333 35668888888888777664
No 395
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=43.30 E-value=75 Score=23.31 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=39.6
Q ss_pred eCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 167 NGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 167 ~~~~~~r~eI~~l~~~frAkIVDv--s~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.++-..-..+..+++.+++.|+|. +.+ +.+.+.=.+++.+.|.+.|..
T Consensus 2 ~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~-V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 2 SCDYSQYGKVERLLEQNGIEIVDEDYTDD-VTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp EE-CCCHHHHHHHHHHTTTEEEEEEECTT-EEEEEEEECCCHHHHHHHHHH
T ss_pred EechhhHHHHHHHHHHCCCEEEcceecce-EEEEEEECHHHHHHHHHHHHH
Confidence 445567788999999999999876 555 999999999999999998764
No 396
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=43.16 E-value=1.3e+02 Score=27.74 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--CChhHHHHHHHHHhcccCEEEEEe--cC---CChhHHHhh
Q 013068 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQD--IT---HLPFAEREL 398 (450)
Q Consensus 326 GVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd~~~ieQI~kQL~KLidVi~V~d--lt---~~~~V~REL 398 (450)
-+-+.+..+....||.+..+.+.....+.+-|+.|=-+ -+-+..+.+.+++...+|+..... ++ .+|=++|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 45567788899999999999998876777655555322 145678899999998888543210 00 023333333
Q ss_pred h-----------eeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCC
Q 013068 399 I-----------LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPI 439 (450)
Q Consensus 399 ~-----------LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~ 439 (450)
- ++||..... ..=-+.|.|++.++.++.++++.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~-----~~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEP-----IDGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEcc-----cCCceEEEEEEEEeeCCEEEEEECCC
Confidence 2 255543211 01125688999999999999998876
No 397
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=39.09 E-value=85 Score=36.05 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=58.8
Q ss_pred EEEEEEE-eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChh----HHHHHHHHHhcccCEEEEEec
Q 013068 315 HTLSMLV-NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE----SIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 315 htLSilV-eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~----~ieQI~kQL~KLidVi~V~dl 388 (450)
+..++.. -++||.|.|++|+.+-.|.+|.|=.+.. +...+..+++.-. |..- -..++...+.--+++.. -
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 6888888 9999999999999999999999988777 6666666666543 3322 24456666666666662 2
Q ss_pred CCChhHHHhhheeEeecC
Q 013068 389 THLPFAERELILIKIAVN 406 (450)
Q Consensus 389 t~~~~V~REL~LIKV~~~ 406 (450)
.+.....-. ..+-|++.
T Consensus 623 ~~~~~~~~~-~~~e~r~~ 639 (693)
T PRK00227 623 GITATFWHG-NILEVRTE 639 (693)
T ss_pred CCCceEeeC-cEEEEEeC
Confidence 222222223 56666664
No 398
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.57 E-value=2.3e+02 Score=23.47 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=51.4
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhh
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V 157 (450)
+.+.|..--+||.|-+....+. .+.||.-+.=--.. +.+.+-+.+.-.+...+++.++|+++= ..+.++++.+..
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~~~~~~l~~~l~~~g--~~~~dls~ne~~ 77 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPDADLDELKERLDALG--YPYQEETDNPAY 77 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeChHHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 5678888899999999999994 47888877764332 334433333322237888999998863 567777776543
No 399
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=38.44 E-value=1.9e+02 Score=24.01 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=49.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhc-cCceeeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEEe
Q 013068 79 RHTISVFVGDESGIINRIAGVFAR-RGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsR-RGyNIeSLsvg~ted~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.|.-|+.|.=+|+-+..+..-+.. -|.-|. ...+.|.+-+++. .+.+.+....++|+.|-.|+.+.-
T Consensus 3 ~hIss~vV~~~p~~~~~v~~~l~~~~gvEVh-----~~~~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 3 MHISSLVVHARPERLEEVAEALAAIPGVEVH-----AVDEDGKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp SCEEEEEEEE-CCCHHHHHHHHCCSTTEEEE-----EEETTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred eeEEEEEEEECchhHHHHHHHHHcCCCcEEE-----eeCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 367789999999999999988877 455443 3333387666665 345778888899999999999863
No 400
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=37.34 E-value=87 Score=24.41 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCcEEEEecCCEEEEEEeCC-hhHHHHHHHHh
Q 013068 173 WPEIMWLVDIFRAKVVDISEHALTIEVTGD-PGKMVAVQRNL 213 (450)
Q Consensus 173 r~eI~~l~~~frAkIVDvs~~sl~iEvTG~-~~KIdafi~~L 213 (450)
-.-|-+|-+.|+++ +++.++. .+.++|+ ++++++..+.+
T Consensus 21 G~~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 21 GKTIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred chHHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHh
Confidence 34688899999999 5777754 6999998 88998877765
No 401
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=37.20 E-value=1.2e+02 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.447 Sum_probs=35.9
Q ss_pred EEEEEEeccchHHHH----HHHHHhccCce-eeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHH
Q 013068 316 TLSMLVNNTPGVLNI----VTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (450)
Q Consensus 316 tLSilVeN~pGVL~R----ItgLFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL 376 (450)
...|.|..+|||+.- |..-+...||+ ++++.+|. .+++.++++ .+.++++.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-------YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 567888899999964 55666668998 77766654 366666663 23455555554
No 402
>PRK14645 hypothetical protein; Provisional
Probab=36.91 E-value=1.8e+02 Score=27.16 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=78.0
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-C---ChhHHHHHHHHHhcccCEEEEEecC-----CC
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHKLIDLHEVQDIT-----HL 391 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---d~~~ieQI~kQL~KLidVi~V~dlt-----~~ 391 (450)
.+|+.-+-..+..+....||-+..+.+.....+.+-|+.|=-+ | +-+..+++.++|..++|+.....-. .+
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 4677788889999999999999999998776667766655421 2 3356889999999999975431100 02
Q ss_pred hhHHHhhh-----------eeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh
Q 013068 392 PFAERELI-----------LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF 444 (450)
Q Consensus 392 ~~V~REL~-----------LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~ 444 (450)
|=++|.|- .+||.. =-+.|.|++.++..+.++++.-|..-.+.
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~----------~~k~~~G~L~~~~d~~i~l~~~~~~~~i~ 138 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRG----------PGENFTGRIKAVSGDQVTFDVGGEDRTLR 138 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEc----------CCeEEEEEEEEEeCCEEEEEECCeEEEEE
Confidence 23333331 244432 12578899999999999999877665543
No 403
>PRK14638 hypothetical protein; Provisional
Probab=36.76 E-value=1.8e+02 Score=26.99 Aligned_cols=101 Identities=12% Similarity=0.224 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-----hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhe
Q 013068 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (450)
Q Consensus 92 VL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd-----e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~REL 161 (450)
+-..+..+....||-+..+..........+++.++.+ -+..+.+.++|..++|+..... |. ..|-+.|.|
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL 89 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPL 89 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCC
Confidence 3445667788999999999988776767788888743 2568888999999999754311 00 033344433
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 013068 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (450)
Q Consensus 162 a-----------LIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG 201 (450)
- .+||+... -+.|.|++.++..+.++++.-|
T Consensus 90 ~~~~~f~r~~G~~v~V~~~~---------~k~~~G~L~~~~~~~i~l~~~~ 131 (150)
T PRK14638 90 RGPKDYVRFTGKLAKIVTKD---------GKTFIGRIESFVDGTITISDEK 131 (150)
T ss_pred CCHHHHHHhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEECC
Confidence 2 35555531 2668899999999999998644
No 404
>PRK14631 hypothetical protein; Provisional
Probab=36.42 E-value=3.9e+02 Score=25.54 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----------------------hHHHHHHHHHhhcCceeeEE
Q 013068 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----------------------ERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----------------------e~~ieqL~kQL~KLiDVi~V 148 (450)
-+-..+.-+....||-+..+.+.......+++|.++.. -+..+.+.++|..++|+...
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~ 88 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDP 88 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccccc
Confidence 45567788899999999999988776666788888742 24677888899999997542
Q ss_pred Ee----cC-Cchhhhhhe-----------eeEEEeCC--CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCC
Q 013068 149 ED----IS-NEPHVEREL-----------MLIKLNGD--TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGD 202 (450)
Q Consensus 149 ~d----lt-~~~~V~REL-----------aLIKV~~~--~~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~ 202 (450)
.. |. ..|-++|.| -++||+.. ...| +.|.|++.++. .+.+++++.|.
T Consensus 89 i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~~~-------k~~~G~L~~v~~~~~~v~l~~~~~ 155 (174)
T PRK14631 89 ISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENR-------RKFQAKLLAVDLENEEIQVEVEGK 155 (174)
T ss_pred CCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEecccCCc-------eEEEEEEEEeecCCCEEEEEEcCC
Confidence 11 00 033344443 24555542 2222 57999999999 99999998653
No 405
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=36.35 E-value=49 Score=38.40 Aligned_cols=57 Identities=25% Similarity=0.436 Sum_probs=40.6
Q ss_pred EEEEEE---eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 316 TLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 316 tLSilV---eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.+++.- .++||+++|+...+++.|+||.-++.|.++. .|+++++.++ .++..+.|++
T Consensus 398 lIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~----~Is~vV~~~d--~~~al~~LH~ 457 (819)
T PRK09436 398 IISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSER----SISVVIDNDD--ATKALRACHQ 457 (819)
T ss_pred EEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccc----eEEEEEcHHH--HHHHHHHHHH
Confidence 344443 4689999999999999999999998887653 4677777443 4444444443
No 406
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=36.30 E-value=75 Score=34.34 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhccC--ceeeeeeeeecC-CCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (450)
Q Consensus 325 pGVL~RItgLFsRRG--yNIeSLtVg~te-~~~iSRiTIVV~gd~~~ieQI~kQL~KLi 380 (450)
.|+|+|+....-.-| |.|+.+.+|.+. ++.+.||++..+ |++.+++|..||.++=
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~-~~~~l~~Il~~l~~~G 72 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSAR-DHQHLEEILTELIDLG 72 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecC-CHHHHHHHHHHHHHcC
Confidence 588999888877765 999999999765 678888875555 7789999999998763
No 407
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=36.25 E-value=1.1e+02 Score=24.92 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=38.0
Q ss_pred EEEEEEec---cchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHh
Q 013068 316 TLSMLVNN---TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLH 377 (450)
Q Consensus 316 tLSilVeN---~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~ 377 (450)
.++|.|.| .+|+=.+++..+..+||.+.+. +...... ..=+|... ++....++|.++|.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~--~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEV--GNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeec--CCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 35566666 5788999999999999999554 4433222 33333333 45556677777764
No 408
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=35.85 E-value=2.5e+02 Score=24.55 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=61.5
Q ss_pred EEEEEEEEeccchHHHHHHHHHhcc--CceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEE
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRR--GYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRR--GyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V 385 (450)
.+++.+.=.++|+.-..|..+..|. |.-...+++-++....+-..+|.+.. +-++++-|=+.|.|..-|.-|
T Consensus 15 ~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~VkmV 89 (90)
T COG2921 15 TFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEIVKMV 89 (90)
T ss_pred cceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCceEEe
Confidence 4799999999999999999999987 45667788899999999999999874 667899999999998877654
No 409
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=35.78 E-value=13 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=10.5
Q ss_pred cccccceeeeec
Q 013068 9 QKLNLSHCFITK 20 (450)
Q Consensus 9 ~~~~~~~~~~~~ 20 (450)
+.|+||+|.|++
T Consensus 3 ~~Ldls~n~l~~ 14 (22)
T PF00560_consen 3 EYLDLSGNNLTS 14 (22)
T ss_dssp SEEEETSSEESE
T ss_pred cEEECCCCcCEe
Confidence 689999999984
No 410
>PRK14640 hypothetical protein; Provisional
Probab=35.28 E-value=2.2e+02 Score=26.37 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-C-ChhHHHHHHHHHhcccCEEEEEe----cC-CChhHHHhh
Q 013068 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G-TDESIGKLVQLLHKLIDLHEVQD----IT-HLPFAEREL 398 (450)
Q Consensus 326 GVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g-d~~~ieQI~kQL~KLidVi~V~d----lt-~~~~V~REL 398 (450)
-+-..+.-+....||-+..+.........+-|+.|=-+ | +-+..+.+.++|+.++|+..... |. .+|=++|.|
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL 86 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPL 86 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcC
Confidence 34556777888999999999988877777766666422 1 44578899999999999642210 00 123334443
Q ss_pred -----------heeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh
Q 013068 399 -----------ILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF 444 (450)
Q Consensus 399 -----------~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~ 444 (450)
-.+||+..... .=-..|.|++.++..+.++++.-|.+.++.
T Consensus 87 ~~~~~f~r~~G~~v~V~l~~~~-----~~~k~~~G~L~~v~~~~v~l~~~~~~~~i~ 138 (152)
T PRK14640 87 FKVAQFEKYVGQEAAVTLRMAT-----NNRRKFKGVIKAVQGDMITLTVDGKDEVLA 138 (152)
T ss_pred CCHHHHHHhCCCeEEEEEeccc-----CCceEEEEEEEEEeCCEEEEEECCeEEEEE
Confidence 23555542211 112679999999999999999987765443
No 411
>PRK14639 hypothetical protein; Provisional
Probab=34.90 E-value=2.2e+02 Score=26.08 Aligned_cols=94 Identities=16% Similarity=0.301 Sum_probs=64.9
Q ss_pred HHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhe-------
Q 013068 98 GVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL------- 161 (450)
Q Consensus 98 gLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~REL------- 161 (450)
-+....||-+..+.+.....+.+++|.++.+ -+..+++.++|..++|+..... |. ..|-++|.|
T Consensus 5 p~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~ 84 (140)
T PRK14639 5 ALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHFA 84 (140)
T ss_pred HhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHHHH
Confidence 4566789999999988877777888888743 3678888889999888753221 00 033344443
Q ss_pred ----eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 013068 162 ----MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (450)
Q Consensus 162 ----aLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvT 200 (450)
-.+||+... -+.|.|++++++.+.+++|..
T Consensus 85 r~~G~~v~v~l~~---------~~~~~G~L~~~~~~~i~l~~~ 118 (140)
T PRK14639 85 KSIGELVKITTNE---------KEKFEGKIVSVDDENITLENL 118 (140)
T ss_pred HhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEEc
Confidence 235555431 257889999999999999763
No 412
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=34.17 E-value=2.1e+02 Score=23.67 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=49.4
Q ss_pred EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEE
Q 013068 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~ 386 (450)
|.-|++|.=+|+-+..+..-+.. +....+...++. .||.+|+.+ +.+.+.+..++|+.|..|+.+.
T Consensus 4 hIss~vV~~~p~~~~~v~~~l~~----~~gvEVh~~~~~--GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 4 HISSLVVHARPERLEEVAEALAA----IPGVEVHAVDED--GKIVVTIEAESSEEEVDLIDAINALPGVLSAS 70 (79)
T ss_dssp CEEEEEEEE-CCCHHHHHHHHCC----STTEEEEEEETT--TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEE
T ss_pred eEEEEEEEECchhHHHHHHHHHc----CCCcEEEeeCCC--CeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 78899999999999999888775 223333333232 778888874 5577899999999999999885
No 413
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=33.88 E-value=72 Score=31.92 Aligned_cols=119 Identities=20% Similarity=0.191 Sum_probs=79.8
Q ss_pred HhccCceeeeEeeeecCCC-c---------------------EEEEEEeC-ChHHHHHHHHHhhcCc-eeeEEE------
Q 013068 100 FARRGYNIESLAVGLNVDK-A---------------------LFTIVVSG-TERVLRQVVEQLNKLV-NVIKVE------ 149 (450)
Q Consensus 100 FsRRGyNIeSLsvg~ted~-~---------------------iiTIVV~g-de~~ieqL~kQL~KLi-DVi~V~------ 149 (450)
-.+.|+.+..|..-..+++ + +++..+.| .++.++.|.+.|..|- |.+..=
T Consensus 20 a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~y 99 (223)
T COG2102 20 ALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEY 99 (223)
T ss_pred HHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHH
Confidence 3456777777766554444 1 14445566 4568999988888776 222222
Q ss_pred ecCCchhhhhheeeEEEeC--CCCCHHHHHHHHHh-cCcEEEEecCCEEEEEEeCC---hhHHHHHHHHhccCCc
Q 013068 150 DISNEPHVERELMLIKLNG--DTSTWPEIMWLVDI-FRAKVVDISEHALTIEVTGD---PGKMVAVQRNLSKFGI 218 (450)
Q Consensus 150 dlt~~~~V~RELaLIKV~~--~~~~r~eI~~l~~~-frAkIVDvs~~sl~iEvTG~---~~KIdafi~~L~~fGI 218 (450)
..+.-+.+++|+.|.-+.- ..+++.-+.++++. |++.||.++..-+-=+.-|. .+-++.+..+=++|||
T Consensus 100 qk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi 174 (223)
T COG2102 100 QKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYGI 174 (223)
T ss_pred HHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcCC
Confidence 2334567889999866532 23677778899999 99999999988777655554 3556666666677887
No 414
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=32.78 E-value=1.5e+02 Score=24.43 Aligned_cols=44 Identities=18% Similarity=0.502 Sum_probs=29.9
Q ss_pred EEEEEEcCchhHHHH----HHHHHhccCce-eeeEeeeecCCCcEEEEEEeCCh
Q 013068 81 TISVFVGDESGIINR----IAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTE 129 (450)
Q Consensus 81 tISVlVeN~pGVL~R----IagLFsRRGyN-IeSLsvg~ted~~iiTIVV~gde 129 (450)
...|.|..+||++.- |..-+...||+ ++++.++. .+++.++++.
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-----~~~l~~~~~~ 50 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-----VIELTIEADS 50 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----EEEEEEcCCC
Confidence 346777889999865 55556667997 77765542 4777777644
No 415
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=31.71 E-value=1.2e+02 Score=24.06 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=43.7
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~---~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
+..+.|.++.+.-..|+.....-||+|++... +...|+....-.++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~ 60 (79)
T cd01514 3 IMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60 (79)
T ss_pred EEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhh
Confidence 45677888878888999999999999998865 55777777777777777777664
No 416
>PRK14636 hypothetical protein; Provisional
Probab=31.26 E-value=2.3e+02 Score=27.05 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=71.0
Q ss_pred chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC----ChhHHHHHHHHHhcccCEEEEE--------------
Q 013068 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDLHEVQ-------------- 386 (450)
Q Consensus 325 pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----d~~~ieQI~kQL~KLidVi~V~-------------- 386 (450)
+-+-+.+..+....||-+.-+.+-....+.+-|+.|--++ +-+..+++.++|..++|+....
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 3356677888899999999999877666777777774331 2367889999999999964321
Q ss_pred -ecCCChhHHHhh-heeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEc
Q 013068 387 -DITHLPFAEREL-ILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVN 437 (450)
Q Consensus 387 -dlt~~~~V~REL-~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~T 437 (450)
.|+...+..|-. =++||...... +=-+.|.|++.++..+.++++.-
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~~-----~g~k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEPL-----DGRKQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEeccc-----CCeEEEEEEEEEEeCCEEEEEEc
Confidence 111222222322 23555543110 01157899999999999999984
No 417
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=31.15 E-value=15 Score=22.06 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.5
Q ss_pred ccccccceeeeec
Q 013068 8 YQKLNLSHCFITK 20 (450)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (450)
-++|+||+|.++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4789999999763
No 418
>PRK14646 hypothetical protein; Provisional
Probab=31.14 E-value=3.1e+02 Score=25.58 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=76.8
Q ss_pred chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-C---ChhHHHHHHHHHhcccCEEEEEe----cC-CChhHH
Q 013068 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHKLIDLHEVQD----IT-HLPFAE 395 (450)
Q Consensus 325 pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---d~~~ieQI~kQL~KLidVi~V~d----lt-~~~~V~ 395 (450)
.-+...+..+....||-+.-+.......+.+-|+-|=-+ | +-+..+.+.++|..++|+..... |. .+|=++
T Consensus 7 ~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 7 SKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence 346677888889999999999988877777777777443 1 24567899999999998643211 00 123344
Q ss_pred Hhh-----------heeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh
Q 013068 396 REL-----------ILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC 443 (450)
Q Consensus 396 REL-----------~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~ 443 (450)
|.| -.+||+..... .=-+.|.|.+.++..++++++.-|..-++
T Consensus 87 RpL~~~~df~r~~G~~v~V~l~~~~-----~~~~~~~G~L~~~~~~~v~l~~~g~~~~i 140 (155)
T PRK14646 87 DELTSERDFKTFKGFPVNVELNQKN-----SKIKFLNGLLYEKSKDYLAINIKGKIKKI 140 (155)
T ss_pred CcCCCHHHHHHhCCCEEEEEEecCc-----CCeEEEEEEEEEEeCCEEEEEECCEEEEE
Confidence 443 24555542211 11267899999999999999987765444
No 419
>PRK05925 aspartate kinase; Provisional
Probab=30.13 E-value=1.9e+02 Score=31.37 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh---hHHHHHHHHHhcccCEEEEEecCCChhHHHhhhe
Q 013068 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD---ESIGKLVQLLHKLIDLHEVQDITHLPFAERELIL 400 (450)
Q Consensus 324 ~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~---~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL~L 400 (450)
.+|.++||.+.|.+.|+||+.++..+ +.++++++.++ ..++.+.+.+.++- ++. ++..+++
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~------~sis~~i~~~~~~~~~~~~l~~~l~~~~---~i~-------~~~~~a~ 374 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN------LGVYFTIDDDDISEEYPQHLTDALSAFG---TVS-------CEGPLAL 374 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC------CEEEEEEechhccHHHHHHHHHHhcCCc---eEE-------EECCEEE
Confidence 57889999999999999999986442 36888888543 13444444444321 221 3446777
Q ss_pred eEeecCccch----HHHHHHHHhcCcEEEEecCCEEEE
Q 013068 401 IKIAVNTAAR----RDVLDIAKIFRARAVDVSDHTITL 434 (450)
Q Consensus 401 IKV~~~~~~R----~eI~~i~~iFrakIVDvs~~si~i 434 (450)
|-|--..-.. ..++......+-+|.-++....-|
T Consensus 375 VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~i 412 (440)
T PRK05925 375 ITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMAL 412 (440)
T ss_pred EEEeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceE
Confidence 7775443221 245555555566777776654433
No 420
>PRK00341 hypothetical protein; Provisional
Probab=30.02 E-value=3.3e+02 Score=23.31 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=48.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceee--eEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceee
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIE--SLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIe--SLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi 146 (450)
.+.+.|.-.+.++....|..++.+.. ..+ ++++-++....+ +|+.+. .+++.++.|=+.|.+.-.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999998664 653 444445544433 455443 35678888888888877774
No 421
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=29.96 E-value=1.2e+02 Score=24.21 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=43.9
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~--~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
++.+.|.++.+.-..|+.....-||++++... +...|.....-.++..|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~ 59 (78)
T cd03713 3 IMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRS 59 (78)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHh
Confidence 35567778877888999999999999998865 46777777788888888777765
No 422
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=29.42 E-value=1.4e+02 Score=23.84 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=44.3
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~--~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
++.+.|.++.+.-..|+.....-||+|++... +...|+....-.++-.|-..|+.
T Consensus 3 i~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~ 59 (78)
T cd03711 3 YLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPS 59 (78)
T ss_pred eEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHh
Confidence 35677888888888999999999999998754 57777888788888777777765
No 423
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=29.41 E-value=47 Score=27.25 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=20.1
Q ss_pred HhcCcEEEEecCCEEEEEEcCCc
Q 013068 418 KIFRARAVDVSDHTITLEVNPIN 440 (450)
Q Consensus 418 ~iFrakIVDvs~~si~iE~TG~~ 440 (450)
..++|...||.+|.+++|..|..
T Consensus 31 g~v~G~L~~V~pDhIvl~~~~~~ 53 (66)
T PF10842_consen 31 GSVRGILVDVKPDHIVLEENGTP 53 (66)
T ss_pred CcEEEEEEeecCCEEEEEeCCcE
Confidence 45789999999999999999764
No 424
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=29.13 E-value=1.1e+02 Score=24.86 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=36.9
Q ss_pred heeEeecCccchHHHHHHHHhcCcEEEEecC---CEEEEEEcCCchhh--hhhhh
Q 013068 399 ILIKIAVNTAARRDVLDIAKIFRARAVDVSD---HTITLEVNPINNIC--FFFDS 448 (450)
Q Consensus 399 ~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~---~si~iE~TG~~ek~--~~~~~ 448 (450)
+.+.|.++.+.-..|+.....-||+|+++.. +...++..-....+ .|+..
T Consensus 4 ~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~ 58 (80)
T cd03709 4 VKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDK 58 (80)
T ss_pred EEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHH
Confidence 5677888888888999999999999999976 35666665555432 44443
No 425
>PRK14434 acylphosphatase; Provisional
Probab=28.73 E-value=1e+02 Score=26.28 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.4
Q ss_pred chHHHHHHHHhcC---cEEEEecCCEEEEEEcCCc-hhh-hhhhhc
Q 013068 409 ARRDVLDIAKIFR---ARAVDVSDHTITLEVNPIN-NIC-FFFDSL 449 (450)
Q Consensus 409 ~R~eI~~i~~iFr---akIVDvs~~si~iE~TG~~-ek~-~~~~~L 449 (450)
-|.-+.++|+.++ |.|-...+.++.+++.|++ +++ .|++.|
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l 62 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEI 62 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 4788999999999 9999999999999999987 466 555443
No 426
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.24 E-value=68 Score=36.82 Aligned_cols=48 Identities=31% Similarity=0.286 Sum_probs=40.5
Q ss_pred CcccCcccccccceeeeeccccEEEEecCCCCCCcccccccccccceeeeeeccCC
Q 013068 2 AATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGS 57 (450)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (450)
.+|||.-|.+|- -.+.|+| .|||--|+-|+|+..||+......++-.+
T Consensus 795 ggtmtss~~~~~--~~~~~gs------s~~sv~r~vf~s~~~vpgfa~~~~~n~~s 842 (864)
T KOG2219|consen 795 GGTMTSSPRMNP--FRIVKGS------SPGSVRRTVFTSSSSVPGFAGHYSANLRS 842 (864)
T ss_pred CceeccCCCCCC--CccCCCC------CCCccccceeeccccCCCccceeeccccc
Confidence 478999998886 4578888 59999999999999999999888877444
No 427
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=28.20 E-value=47 Score=33.18 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=29.1
Q ss_pred cceeeeeccccEEEEecCCCCCCccccc------ccccccceeeee
Q 013068 13 LSHCFITKSCDFVLFWRPPSQGRTSFSS------SAEVSSKKLQLV 52 (450)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 52 (450)
|.+|-+-.+-|-+++|.||.+.||-|.+ +++++.-.+.+.
T Consensus 65 lp~nvL~~~~~~~vWy~p~~~R~v~F~~~~lg~~~~~~~~P~lvf~ 110 (228)
T TIGR03737 65 LDPNVLALSPGLMVWWTPAATRRVFFQSKMFGLRSGVVPHPGLVFA 110 (228)
T ss_pred cCccEEEeCCCeEEEEecCceEEEEEecccCCCcceeecCCCEEEE
Confidence 5566667778999999999999999974 344444444443
No 428
>PRK08841 aspartate kinase; Validated
Probab=27.78 E-value=1.4e+02 Score=31.60 Aligned_cols=57 Identities=11% Similarity=0.224 Sum_probs=41.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCc
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV 143 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLi 143 (450)
.+++.=++.||++.|+...+++.|+||.+++.+ + --+.++|+. +..++.++.|.+-.
T Consensus 320 ~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~--~~is~vv~~--~~~~~av~~lH~~f 376 (392)
T PRK08841 320 LLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P--QSSMLVLDP--ANVDRAANILHKTY 376 (392)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C--cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 566666788999999999999999999887742 1 237777764 34555555555443
No 429
>PRK14644 hypothetical protein; Provisional
Probab=26.97 E-value=3.5e+02 Score=24.81 Aligned_cols=95 Identities=8% Similarity=0.259 Sum_probs=62.3
Q ss_pred HHHhccCceeeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHhhcCceeeEEEecC-----Cchhhhhhee---------
Q 013068 98 GVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDIS-----NEPHVERELM--------- 162 (450)
Q Consensus 98 gLFsRRGyNIeSLsvg~ted~~iiTIVV~g-de~~ieqL~kQL~KLiDVi~V~dlt-----~~~~V~RELa--------- 162 (450)
.+....||-+..+.........++++.++. +=+..+.+.++|..++|+.....-. ..|-+.|.|-
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Idk~~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~f~r~~G 85 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILNSRDLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMDYETDELENHIG 85 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEECCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCCCCHHHHHHhCC
Confidence 456778999998888766666668888763 4567888899999999975442100 0333444432
Q ss_pred -eEEEeC--CCCCHHHHHHHHHhcCcEEEEecCCEEEEEE
Q 013068 163 -LIKLNG--DTSTWPEIMWLVDIFRAKVVDISEHALTIEV 199 (450)
Q Consensus 163 -LIKV~~--~~~~r~eI~~l~~~frAkIVDvs~~sl~iEv 199 (450)
.++|.. +.+.+ +.|.|.++++.++.+++++
T Consensus 86 ~~v~V~l~~~~~~~-------~~~~G~L~~v~~~~i~l~~ 118 (136)
T PRK14644 86 EIIDVSLNKEVNKT-------DFITGELLENNPETITLKW 118 (136)
T ss_pred CeEEEEEccCcCCe-------EEEEEEEEEEeCCEEEEEE
Confidence 134433 21222 5688999999999999964
No 430
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=26.45 E-value=1.5e+02 Score=24.10 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=42.8
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEe--cCCE--EEEEEeCChhHHHHHHHHhccC
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDI--SEHA--LTIEVTGDPGKMVAVQRNLSKF 216 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDv--s~~s--l~iEvTG~~~KIdafi~~L~~f 216 (450)
++.+.|.++.+.-..|+...+.-||+|++. .+++ ..|+..=.-.++..|-..|+.+
T Consensus 3 i~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~ 62 (80)
T cd04098 3 IYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVH 62 (80)
T ss_pred EEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhh
Confidence 467788888888889999999999999954 3345 6677777777777777777653
No 431
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=26.02 E-value=2.1e+02 Score=23.29 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=37.4
Q ss_pred EEEEEEcC---chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHhh
Q 013068 81 TISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLN 140 (450)
Q Consensus 81 tISVlVeN---~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~-gde~~ieqL~kQL~ 140 (450)
.++|.|.| .+|.=.+++..+..+||.+....-.+... ..-+|... ++....++|.++|.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 35556655 57889999999999999996554333222 22344333 45556666666663
No 432
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=25.32 E-value=1.7e+02 Score=23.38 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=43.7
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~--~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
++.+.|.++.+.-..|+..+..-||+|++... +...|+....-.++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~ 59 (78)
T cd04097 3 IMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRS 59 (78)
T ss_pred EEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHh
Confidence 35677778888888999999999999998864 45677777778888777777765
No 433
>PRK14634 hypothetical protein; Provisional
Probab=25.18 E-value=5.1e+02 Score=24.15 Aligned_cols=114 Identities=5% Similarity=0.119 Sum_probs=73.3
Q ss_pred chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-C---ChhHHHHHHHHHhcccCEEEEEe----cC-CChhHH
Q 013068 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHKLIDLHEVQD----IT-HLPFAE 395 (450)
Q Consensus 325 pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---d~~~ieQI~kQL~KLidVi~V~d----lt-~~~~V~ 395 (450)
+-+-..+..+....||-+..+.+.......+-|+.|=-+ | +-+..+.+.++|..+.|+..... |. .+|=++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 345566677778999999999988777777777776543 3 23467889999999999653210 00 023333
Q ss_pred Hhhh-----------eeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh
Q 013068 396 RELI-----------LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC 443 (450)
Q Consensus 396 REL~-----------LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~ 443 (450)
|.|- ++||...... +=-+.|.|++.++..+.+++++-|..-++
T Consensus 87 RpL~~~~~f~r~~G~~V~V~l~~~~-----~~~k~~~G~L~~~~~~~v~l~~~~~~~~i 140 (155)
T PRK14634 87 DQLSSDRDFQTFRGFPVEVSHRDDD-----GSEQRLEGLLLERNEDHLQINIRGRIKRI 140 (155)
T ss_pred CcCCCHHHHHHhCCCeEEEEEecCC-----CCeEEEEEEEEEEeCCEEEEEECCEEEEE
Confidence 3331 3444432110 01157999999999999999987654333
No 434
>PRK14426 acylphosphatase; Provisional
Probab=25.14 E-value=1.1e+02 Score=25.83 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=33.8
Q ss_pred cchHHHHHHHHhcC--cEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068 408 AARRDVLDIAKIFR--ARAVDVSDHTITLEVNPINNIC-FFFDSL 449 (450)
Q Consensus 408 ~~R~eI~~i~~iFr--akIVDvs~~si~iE~TG~~ek~-~~~~~L 449 (450)
.-|.-+.++|..++ |.|-...+.++.+++.|+++++ +|++.|
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l 62 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWL 62 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHH
Confidence 34788999998765 7888889999999999999977 455544
No 435
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.72 E-value=2.3e+02 Score=22.43 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (450)
Q Consensus 326 GVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi 380 (450)
.+|+.++.-|. -.+||-.=.+.+..+..+-+|++-+.|+++.+++..+.|...-
T Consensus 17 piis~l~~~~~-v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~ 70 (76)
T PF09383_consen 17 PIISQLIREFG-VDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQG 70 (76)
T ss_dssp CHHHHHHHHHT--EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhC-CCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCC
Confidence 45666555542 3467777777788888999999999999999999999998763
No 436
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=24.65 E-value=1.7e+02 Score=23.68 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=43.7
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~--~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
++.+.|.++.+.-..|+..+..-||+|++..+ +...|+....-.++..|-..|+.
T Consensus 5 i~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs 61 (85)
T smart00838 5 IMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRS 61 (85)
T ss_pred EEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHH
Confidence 45677778878888999999999999998865 45677777778888878777764
No 437
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=24.54 E-value=34 Score=34.35 Aligned_cols=20 Identities=35% Similarity=0.858 Sum_probs=15.3
Q ss_pred ccccEEEEecCCCCCCcccc
Q 013068 20 KSCDFVLFWRPPSQGRTSFS 39 (450)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ 39 (450)
++.|.+|||-||.-|.|++.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp S---EEEEESSTTSSHHHHH
T ss_pred CCcceEEEECCCccchhHHH
Confidence 45789999999999999983
No 438
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=24.39 E-value=1.8e+02 Score=26.11 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=58.9
Q ss_pred HHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC----ChhHHHHHHHHHhcccCEEEEEe----cC-CChhHHHhhh--
Q 013068 331 VTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDLHEVQD----IT-HLPFAERELI-- 399 (450)
Q Consensus 331 ItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----d~~~ieQI~kQL~KLidVi~V~d----lt-~~~~V~REL~-- 399 (450)
|..+....||.+-.+.+.......+ +.+.++. +-+..+++.+.+..++|+..... |. .+|=++|.|-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~--l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~ 79 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRI--LRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSP 79 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEE--EEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSH
T ss_pred cccchhhcCCEEEEEEEEECCCCEE--EEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCH
Confidence 3456778899999999988765544 5555543 33467888999999998832110 00 0122233331
Q ss_pred ---------eeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCc
Q 013068 400 ---------LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPIN 440 (450)
Q Consensus 400 ---------LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ 440 (450)
.++|...... +=-..|.|++.++..+++++++.|..
T Consensus 80 ~~~~~~iG~~v~v~~~~~~-----~~~~~~~G~L~~~~~~~i~l~~~~~~ 124 (141)
T PF02576_consen 80 RDFERFIGRKVKVKLKQPV-----NGRKEFEGKLLEVDEDEITLEVEGKG 124 (141)
T ss_dssp HHHHHH-SEEEEEE-SS-S-----SS-SEEEEEEEEEETTEEEEEEE-SS
T ss_pred HHHHHhcCCeEEEEEeccC-----CCcEEEEEEEEEEeCCEEEEEECCcc
Confidence 2444432111 01246889999999999999999984
No 439
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=23.94 E-value=1.4e+02 Score=29.56 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (450)
Q Consensus 324 ~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d 387 (450)
.|.-|..|...+...||.|++-.+.-..... +.+ -+.+-+.+.+++..|+.+.||.+|.+
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~---v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNNP---VEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS----EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCCC---ccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 5888999999999999999986665433222 222 22234468889999999999999975
No 440
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=23.89 E-value=1.5e+02 Score=23.87 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=36.1
Q ss_pred heeEeecCccchHHHHHHHHhcCcEEEEecC---CEEEEEEcCCchhh-hhhhh
Q 013068 399 ILIKIAVNTAARRDVLDIAKIFRARAVDVSD---HTITLEVNPINNIC-FFFDS 448 (450)
Q Consensus 399 ~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~---~si~iE~TG~~ek~-~~~~~ 448 (450)
+.+.|.++.+.-..|+..+..-||++.+... +...|+.......+ .|...
T Consensus 4 ~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~ 57 (79)
T cd03710 4 EELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSE 57 (79)
T ss_pred EEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHH
Confidence 4566778888888999999999999999976 34666666555433 44433
No 441
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.51 E-value=2.7e+02 Score=24.18 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEEeCC-CCCH-HHHHHHHHhcCcEEEEecCCEEEE
Q 013068 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGD-TSTW-PEIMWLVDIFRAKVVDISEHALTI 197 (450)
Q Consensus 128 de~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV~~~-~~~r-~eI~~l~~~frAkIVDvs~~sl~i 197 (450)
++..++++-.+| =.|||.=|||.-+ .+.+ .-+.+|++..+|.+|++=...+++
T Consensus 28 t~~vi~ei~~aL-----------------~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~~~vl 82 (95)
T TIGR00253 28 TEGVIKEIEQAL-----------------EHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGKTIVL 82 (95)
T ss_pred CHHHHHHHHHHH-----------------HhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEccEEEE
Confidence 577777777777 3477766666432 3344 356788899999999998777765
No 442
>PRK14440 acylphosphatase; Provisional
Probab=23.07 E-value=3.3e+02 Score=23.02 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=28.2
Q ss_pred ecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 114 LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 114 ~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.+...|.+.|.+.|+++.++++.+.|.+--.-.+|+.+
T Consensus 36 ~N~~dG~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i 73 (90)
T PRK14440 36 KNLPDGSVEVVAEGYEEALSKLLERIKQGPPAAEVEKV 73 (90)
T ss_pred EECCCCCEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEE
Confidence 34455678999999999999999988876554445443
No 443
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.07 E-value=1.4e+02 Score=25.16 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=33.4
Q ss_pred HHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcE-EEeecc
Q 013068 175 EIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIK-ELARTG 225 (450)
Q Consensus 175 eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIl-EiaRTG 225 (450)
-..++.+.+++ ..=-++||.+|.+.-++..++.|++.|.+ -+.-.+
T Consensus 46 ~~~~i~~~~~~-----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 46 FVEQIRELTGG-----RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHTTT-----SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccccccccc-----ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 44555566665 33356899999999999999999999954 444443
No 444
>PRK13558 bacterio-opsin activator; Provisional
Probab=23.05 E-value=1e+03 Score=26.11 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=91.0
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhh
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~ 158 (450)
..+.+-+.+..-.|.+++.-+ |-.|+--.+.++.+.+. +-+.+.|++ .+.+...|+---.|..++.++..+
T Consensus 450 ~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--- 521 (665)
T PRK13558 450 LELEVELSDPDLFLVELAAAT---DCRLEYRGSIADDDGGVLVLFTVPGDD--ATALVDAAADYDAVQDVRVLVSTD--- 521 (665)
T ss_pred EEEEEEECCCcchHHHHhhhc---CcEEEEEeEEEcCCCCEEEEEEEeCCC--HHHHHHhhhccCCcceEEEEEecC---
Confidence 477888888888999877665 66666555556666553 455577764 245556666666666655554332
Q ss_pred hheeeEEEeCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEE-eCChhHHHHHHHHhccCC-cEEEeecc
Q 013068 159 RELMLIKLNGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEV-TGDPGKMVAVQRNLSKFG-IKELARTG 225 (450)
Q Consensus 159 RELaLIKV~~~~~~r~eI~~l~~~frAkIVDv--s~~sl~iEv-TG~~~KIdafi~~L~~fG-IlEiaRTG 225 (450)
.-.|+++..+.. .+......+++.|.++ .++..++.+ .++.+.+..+++.|+... =.++.+-+
T Consensus 522 -~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (665)
T PRK13558 522 -DECLVEFTLSGD---SLVRLLSERGGRVQDMHADRDRLELTVEVPTEAAGRAVVETLRDRYAGAELVSYT 588 (665)
T ss_pred -CceEEEEEecCC---cHhHhhHhcCCEEEEEEEeCCeEEEEEEcCCCccHHHHHHHHHhhcCCcEEEEEE
Confidence 247888876542 6888899999999876 567777777 678899999999998754 24444433
No 445
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.04 E-value=44 Score=34.14 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=45.0
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d 387 (450)
+-+..+ |.=|+.|+..|..+||+|.+...+.-. .+.+.+-+++ .+.+.+|+..|+.+.||..|.+
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~le~~P---~~~vev~~~~-lEk~qkL~q~L~e~edV~~iy~ 271 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGLEFIP---LEEVEVDVPA-LEKIQKLIQALYENEDVMFIYD 271 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeecccccccc---CCccccCccc-hHHHHHHHHHHhhchhHHHHhh
Confidence 455554 556999999999999999976554332 2334444443 5677788888888888877653
No 446
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=22.45 E-value=1.1e+02 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=31.7
Q ss_pred chHHHHHHHHhc--CcEEEEecCCEEEEEEcCCchhhh-hhhh
Q 013068 409 ARRDVLDIAKIF--RARAVDVSDHTITLEVNPINNICF-FFDS 448 (450)
Q Consensus 409 ~R~eI~~i~~iF--rakIVDvs~~si~iE~TG~~ek~~-~~~~ 448 (450)
-|.-+.++|..+ .|.|-...++++.+++.|++++++ |++.
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~ 61 (91)
T PF00708_consen 19 FRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKW 61 (91)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHH
Confidence 377888999887 688999999999999999998774 4443
No 447
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=22.42 E-value=1e+02 Score=33.73 Aligned_cols=53 Identities=32% Similarity=0.501 Sum_probs=41.1
Q ss_pred EEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 320 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.++|..|.|.|+-.+|+..|+||+=|+-|.++. .|..+++ ++..++-.+-|+|
T Consensus 480 nvq~ss~i~~rmF~~l~e~giNvqMISQGAskv----NIS~ivn--e~ea~k~v~~lH~ 532 (559)
T KOG0456|consen 480 NVQNSSGILERMFCVLAENGINVQMISQGASKV----NISCIVN--EKEAEKCVQALHK 532 (559)
T ss_pred hhhhhhHHHHHHHHHHHhcCcceeeeccccccc----eEEEEEC--hHHHHHHHHHHHH
Confidence 378999999999999999999999999887653 2444454 4566777777665
No 448
>PRK14647 hypothetical protein; Provisional
Probab=22.33 E-value=6.4e+02 Score=23.49 Aligned_cols=102 Identities=14% Similarity=0.252 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCceeeEEEe----cC-Cchhhhhhe-
Q 013068 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL- 161 (450)
Q Consensus 92 VL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiDVi~V~d----lt-~~~~V~REL- 161 (450)
+-..+..+....||-+.-+.+.......+++|.++.+ -+.++.+.++|..++|+..... |. ..|-++|.|
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~ 89 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLK 89 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCC
Confidence 3445677788999999999998877777888888754 3678888889999998754310 00 033344443
Q ss_pred ----------eeEEEeCCC-------CCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 013068 162 ----------MLIKLNGDT-------STWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (450)
Q Consensus 162 ----------aLIKV~~~~-------~~r~eI~~l~~~frAkIVDvs~~sl~iEvT 200 (450)
-.+||.... +.| +.|.|++.++..+.+++++-
T Consensus 90 ~~~~f~r~~G~~v~V~l~~~~~~~~~~~~-------~~~~G~L~~~~~~~v~l~~~ 138 (159)
T PRK14647 90 KEADYERYAGRLVKVRTFELLADEAGNKR-------KTFLGELEGLADGVVTIALK 138 (159)
T ss_pred CHHHHHHhCCcEEEEEEeccccccccCCc-------eEEEEEEEeecCCEEEEEEc
Confidence 235554421 123 67899999999999999874
No 449
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.15 E-value=2.1e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCcEEEEecCC---EEEEEEeCChhHHHHHHHHh
Q 013068 174 PEIMWLVDIFRAKVVDISEH---ALTIEVTGDPGKMVAVQRNL 213 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~---sl~iEvTG~~~KIdafi~~L 213 (450)
..|.+|.+.++++| ++.+. .=.+.++|+++.+....+.+
T Consensus 20 ~~i~~i~~~~g~~I-~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 20 SNIRKIMEETGVKI-RFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CcHHHHHHHhCCEE-EcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 35778888999985 55442 55689999999998887765
No 450
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=22.12 E-value=2.7e+02 Score=30.54 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=49.2
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE---EEEEEeCChHHHHHHHHHhhcC
Q 013068 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL---FTIVVSGTERVLRQVVEQLNKL 142 (450)
Q Consensus 80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i---iTIVV~gde~~ieqL~kQL~KL 142 (450)
-.+.+...|++|.|.|+..+|...+.||.-|-.-+++..+- +-+-++.+...+.++++-|..-
T Consensus 37 ~~~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~ 102 (461)
T KOG3820|consen 37 ISLIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQN 102 (461)
T ss_pred EEEEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHh
Confidence 34667789999999999999999999999999888776632 4444556677788888766554
No 451
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.86 E-value=97 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.|.-|..|...+...||.|++-.+.-.... .+.+ -..+-+.+..|+..|+.+-||.+|.+
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~-~v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNN-PVEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS--EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCC-Cccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 588999999999999999997666543322 2333 12234567778889999999999874
No 452
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=21.77 E-value=1.4e+02 Score=31.77 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=33.6
Q ss_pred CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC
Q 013068 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE 351 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te 351 (450)
+..+--|--.-+..||+|-.+..+|+-|.+|+.+|..-|-.
T Consensus 278 rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h 318 (377)
T KOG2797|consen 278 RLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFH 318 (377)
T ss_pred ccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeeccccc
Confidence 33344455558999999999999999999999999998843
No 453
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=21.77 E-value=2.7e+02 Score=30.53 Aligned_cols=78 Identities=15% Similarity=0.349 Sum_probs=60.7
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCCChhHH
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~~~~V~ 395 (450)
|.+..+|+-|+...+..|..-|++|..-+.+ .-+-||-+-.+. +.+.++.+...|+.+-.|..|..+.--|.=.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi-----d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~mPseR 77 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI-----DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPWMPSER 77 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee-----cCCCeEEEeccccCHHHHHHHHHHHhcCCCccceeeecCCcchh
Confidence 6788999999999999999999999998876 334567676653 6678999999999998888777766554433
Q ss_pred Hhhh
Q 013068 396 RELI 399 (450)
Q Consensus 396 REL~ 399 (450)
|-+.
T Consensus 78 ~hl~ 81 (511)
T COG3283 78 EHLA 81 (511)
T ss_pred HhHH
Confidence 3333
No 454
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=21.72 E-value=3.9e+02 Score=21.99 Aligned_cols=69 Identities=10% Similarity=0.168 Sum_probs=47.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccC--ceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceee
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRG--YNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRG--yNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi 146 (450)
..|.+.+...|.++....|..+|.+.. ++-..+...++..... +|+.+. .+++.+..+=+.|.+.-.|.
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vk 82 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVK 82 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEE
Confidence 468999999999999999999999964 2334444555544444 444333 45778888888888776664
No 455
>PRK14423 acylphosphatase; Provisional
Probab=21.50 E-value=1.3e+02 Score=25.41 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=28.1
Q ss_pred EEEEEEeCChhHHHHHHHHHhcccCEEEEEecCC
Q 013068 357 CITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 357 RiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
++.|.+.|+++.++++++.|++-..-.+|++++-
T Consensus 44 ~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 44 RVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred eEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 5678999999999999999988777777776653
No 456
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=21.28 E-value=1.7e+02 Score=23.39 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=43.9
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CE--EEEEEeCChhHHHHHHHHhccC
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HA--LTIEVTGDPGKMVAVQRNLSKF 216 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~--~s--l~iEvTG~~~KIdafi~~L~~f 216 (450)
++.+.|.++.+.-..|+..+..-||+|++... ++ ..|.....-.++..|...|+.+
T Consensus 3 i~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~ 62 (80)
T cd04096 3 IYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSA 62 (80)
T ss_pred EEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhh
Confidence 45678888888888999999999999997754 23 7777777778887777777653
No 457
>PRK14631 hypothetical protein; Provisional
Probab=21.18 E-value=7.2e+02 Score=23.77 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--------------------CChhHHHHHHHHHhcccCEEEE
Q 013068 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--------------------GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 326 GVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--------------------gd~~~ieQI~kQL~KLidVi~V 385 (450)
-+-..+.-+....||-+..+.+-......+-|+.|=-+ -+-+..+.+.++|..++|+...
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~ 88 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDP 88 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccccc
Confidence 45567778889999999999998877777877777532 1234678899999999997542
Q ss_pred Ee----cC-CChhHHHhh-----------heeEeecCccchHHHHHHHHhcCcEEEEec--CCEEEEEEcCCc
Q 013068 386 QD----IT-HLPFAEREL-----------ILIKIAVNTAARRDVLDIAKIFRARAVDVS--DHTITLEVNPIN 440 (450)
Q Consensus 386 ~d----lt-~~~~V~REL-----------~LIKV~~~~~~R~eI~~i~~iFrakIVDvs--~~si~iE~TG~~ 440 (450)
.. |. .+|=++|.| -.+||...... .=-+.|.|++.++. .+++++++.|..
T Consensus 89 i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~-----~~~k~~~G~L~~v~~~~~~v~l~~~~~~ 156 (174)
T PRK14631 89 ISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAV-----ENRRKFQAKLLAVDLENEEIQVEVEGKH 156 (174)
T ss_pred CCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEeccc-----CCceEEEEEEEEeecCCCEEEEEEcCCc
Confidence 11 00 023333333 24555542211 01157999999999 999999997654
No 458
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=20.75 E-value=5.1e+02 Score=25.89 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.1
Q ss_pred EEEEEEeCChhHHHHHHHHhccCCcE
Q 013068 194 ALTIEVTGDPGKMVAVQRNLSKFGIK 219 (450)
Q Consensus 194 sl~iEvTG~~~KIdafi~~L~~fGIl 219 (450)
-++|+.+|.+.-++..++.|++.|.+
T Consensus 240 d~vid~~g~~~~~~~~~~~l~~~G~~ 265 (355)
T cd08230 240 DLIIEATGVPPLAFEALPALAPNGVV 265 (355)
T ss_pred CEEEECcCCHHHHHHHHHHccCCcEE
Confidence 58999999988899999999999954
No 459
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=20.27 E-value=6.1e+02 Score=22.43 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=29.8
Q ss_pred eeEeecCc---cchHH-HHHHHHhcCcEEEEecCCEEEEEEcCCch
Q 013068 400 LIKIAVNT---AARRD-VLDIAKIFRARAVDVSDHTITLEVNPINN 441 (450)
Q Consensus 400 LIKV~~~~---~~R~e-I~~i~~iFrakIVDvs~~si~iE~TG~~e 441 (450)
||||+.-. +.|.+ .-.||+.-+|..|++=..++++---|...
T Consensus 45 LIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~~vlyr~~~e~ 90 (97)
T COG1534 45 LIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKTLVLYRESKEK 90 (97)
T ss_pred cEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeEEEEEecCccc
Confidence 45555433 34444 45688899999999999999998855544
No 460
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=20.03 E-value=5.8e+02 Score=22.14 Aligned_cols=23 Identities=30% Similarity=0.153 Sum_probs=19.7
Q ss_pred HHHHHHHhcCcEEEEecCCEEEE
Q 013068 412 DVLDIAKIFRARAVDVSDHTITL 434 (450)
Q Consensus 412 eI~~i~~iFrakIVDvs~~si~i 434 (450)
-+.+||+..+|.+|++=..++++
T Consensus 60 ~a~~i~~~~~a~~Vq~iG~~~vl 82 (95)
T TIGR00253 60 IAEALVKETGACNVQVIGKTIVL 82 (95)
T ss_pred HHHHHHHHHCCEEEEEEccEEEE
Confidence 46788999999999998887776
Done!