Query 013068
Match_columns 450
No_of_seqs 322 out of 2228
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgc_A Acetolactate synthase, 100.0 1.7E-50 5.7E-55 379.2 20.6 158 77-235 27-188 (193)
2 2pc6_A Probable acetolactate s 100.0 6.3E-50 2.1E-54 367.2 18.0 158 77-234 2-161 (165)
3 2f1f_A Acetolactate synthase i 100.0 3.2E-49 1.1E-53 361.9 19.1 158 77-234 1-161 (164)
4 2fgc_A Acetolactate synthase, 100.0 1.5E-44 5.1E-49 338.9 16.4 148 297-449 16-166 (193)
5 2pc6_A Probable acetolactate s 100.0 3.8E-42 1.3E-46 315.6 14.4 138 312-449 2-140 (165)
6 2f1f_A Acetolactate synthase i 100.0 1.4E-41 4.9E-46 311.3 14.7 138 312-449 1-139 (164)
7 1u8s_A Glycine cleavage system 99.2 1.5E-09 5.2E-14 98.9 18.7 63 79-141 6-68 (192)
8 2f06_A Conserved hypothetical 99.1 3.9E-09 1.3E-13 91.8 15.3 125 76-218 3-133 (144)
9 2ko1_A CTR148A, GTP pyrophosph 98.9 1.9E-08 6.6E-13 79.4 11.5 76 314-391 5-81 (88)
10 2f06_A Conserved hypothetical 98.9 3.9E-08 1.3E-12 85.5 13.7 101 310-426 2-102 (144)
11 2ko1_A CTR148A, GTP pyrophosph 98.7 9.5E-08 3.3E-12 75.3 10.5 77 78-154 4-81 (88)
12 1u8s_A Glycine cleavage system 98.6 1.6E-07 5.4E-12 85.5 10.7 114 314-430 6-127 (192)
13 1zpv_A ACT domain protein; str 98.6 9.9E-08 3.4E-12 76.4 8.2 68 313-382 4-72 (91)
14 1zpv_A ACT domain protein; str 98.5 1.8E-07 6.3E-12 74.8 6.1 70 78-147 4-74 (91)
15 2nyi_A Unknown protein; protei 98.2 5.9E-05 2E-09 69.3 17.1 78 313-391 92-178 (195)
16 1y7p_A Hypothetical protein AF 98.0 2.2E-05 7.5E-10 75.3 9.8 81 313-395 3-86 (223)
17 1y7p_A Hypothetical protein AF 97.7 9.8E-05 3.3E-09 70.8 8.9 79 78-158 3-86 (223)
18 2jhe_A Transcription regulator 97.4 0.0026 9.1E-08 54.8 12.7 101 316-434 2-103 (190)
19 3mtj_A Homoserine dehydrogenas 97.2 0.00081 2.8E-08 69.9 8.6 71 313-383 358-430 (444)
20 2jhe_A Transcription regulator 97.1 0.0046 1.6E-07 53.3 11.4 69 81-152 2-71 (190)
21 1sc6_A PGDH, D-3-phosphoglycer 97.1 0.0019 6.5E-08 66.1 10.3 74 78-151 330-403 (404)
22 1sc6_A PGDH, D-3-phosphoglycer 97.0 0.0036 1.2E-07 64.1 11.5 73 314-388 331-403 (404)
23 2re1_A Aspartokinase, alpha an 96.9 0.0048 1.6E-07 55.1 10.1 126 79-214 25-161 (167)
24 2nyi_A Unknown protein; protei 96.8 0.0031 1.1E-07 57.8 8.3 68 74-142 88-162 (195)
25 3o1l_A Formyltetrahydrofolate 96.8 0.0036 1.2E-07 62.1 8.7 69 310-378 18-88 (302)
26 3l76_A Aspartokinase; alloster 96.7 0.097 3.3E-06 56.1 20.0 223 79-378 272-514 (600)
27 3lou_A Formyltetrahydrofolate 96.6 0.0049 1.7E-07 60.8 8.3 70 309-378 5-78 (292)
28 3k5p_A D-3-phosphoglycerate de 96.5 0.011 3.6E-07 61.2 10.3 73 79-151 343-415 (416)
29 3o1l_A Formyltetrahydrofolate 96.5 0.0061 2.1E-07 60.5 8.2 67 75-141 18-88 (302)
30 3n0v_A Formyltetrahydrofolate 96.5 0.007 2.4E-07 59.5 8.5 66 312-377 6-72 (286)
31 1ygy_A PGDH, D-3-phosphoglycer 96.4 0.0057 2E-07 64.2 8.0 73 314-388 454-526 (529)
32 1ygy_A PGDH, D-3-phosphoglycer 96.4 0.0042 1.4E-07 65.3 7.0 72 78-151 453-526 (529)
33 3obi_A Formyltetrahydrofolate 96.4 0.0082 2.8E-07 59.1 8.4 109 314-427 6-122 (288)
34 3n0v_A Formyltetrahydrofolate 96.4 0.0073 2.5E-07 59.4 7.9 64 77-140 6-72 (286)
35 3lou_A Formyltetrahydrofolate 96.3 0.0073 2.5E-07 59.6 7.7 66 76-141 7-78 (292)
36 3nrb_A Formyltetrahydrofolate 96.3 0.0097 3.3E-07 58.5 8.3 110 313-427 6-121 (287)
37 3mtj_A Homoserine dehydrogenas 96.3 0.0069 2.4E-07 63.0 7.6 72 75-146 355-430 (444)
38 3obi_A Formyltetrahydrofolate 96.2 0.01 3.5E-07 58.4 7.9 63 78-140 5-71 (288)
39 3nrb_A Formyltetrahydrofolate 96.0 0.013 4.3E-07 57.7 7.6 62 78-139 6-69 (287)
40 2re1_A Aspartokinase, alpha an 95.8 0.02 6.7E-07 51.1 7.3 113 316-436 27-148 (167)
41 3p96_A Phosphoserine phosphata 95.8 0.079 2.7E-06 52.8 12.2 140 77-218 10-171 (415)
42 3k5p_A D-3-phosphoglycerate de 95.7 0.043 1.5E-06 56.7 10.1 73 314-388 343-415 (416)
43 3p96_A Phosphoserine phosphata 95.6 0.092 3.1E-06 52.3 12.2 117 313-431 11-137 (415)
44 2dtj_A Aspartokinase; protein- 95.2 0.2 6.7E-06 45.2 11.8 127 80-217 16-157 (178)
45 2qmx_A Prephenate dehydratase; 95.1 0.14 4.9E-06 50.3 11.2 73 313-385 199-274 (283)
46 2qmx_A Prephenate dehydratase; 94.2 0.18 6.1E-06 49.6 9.5 71 77-147 198-273 (283)
47 3mwb_A Prephenate dehydratase; 94.1 0.17 5.9E-06 50.5 9.2 72 310-381 197-272 (313)
48 2dt9_A Aspartokinase; protein- 94.0 0.46 1.6E-05 42.1 11.1 120 86-215 24-154 (167)
49 3mah_A Aspartokinase; aspartat 93.9 0.19 6.4E-06 44.3 8.2 50 322-378 29-78 (157)
50 3s1t_A Aspartokinase; ACT doma 93.8 0.37 1.3E-05 43.8 10.2 123 85-214 23-154 (181)
51 2dtj_A Aspartokinase; protein- 93.8 0.14 4.8E-06 46.2 7.2 112 316-436 17-140 (178)
52 3s1t_A Aspartokinase; ACT doma 93.7 0.24 8.2E-06 45.1 8.7 47 320-366 23-70 (181)
53 2qmw_A PDT, prephenate dehydra 93.7 0.18 6.1E-06 49.2 8.3 69 78-147 185-261 (267)
54 3mwb_A Prephenate dehydratase; 93.6 0.28 9.5E-06 49.0 9.7 67 76-142 198-270 (313)
55 2dt9_A Aspartokinase; protein- 93.6 0.099 3.4E-06 46.4 5.8 106 321-434 24-138 (167)
56 1phz_A Protein (phenylalanine 92.9 0.21 7.1E-06 52.0 7.8 73 76-148 31-108 (429)
57 3ab4_A Aspartokinase; aspartat 92.1 0.8 2.7E-05 46.6 10.9 130 79-217 264-406 (421)
58 3luy_A Probable chorismate mut 92.1 0.57 1.9E-05 47.0 9.5 70 316-385 208-282 (329)
59 2qmw_A PDT, prephenate dehydra 92.0 0.65 2.2E-05 45.3 9.7 72 314-385 186-262 (267)
60 2nzc_A Hypothetical protein; s 91.6 0.96 3.3E-05 37.5 8.8 70 313-383 6-76 (86)
61 3mah_A Aspartokinase; aspartat 91.5 0.63 2.2E-05 40.8 8.2 112 86-214 28-146 (157)
62 4go7_X Aspartokinase; transfer 90.7 0.33 1.1E-05 45.4 5.8 60 302-365 28-88 (200)
63 1phz_A Protein (phenylalanine 90.6 0.78 2.7E-05 47.8 9.0 76 311-386 31-109 (429)
64 3luy_A Probable chorismate mut 90.5 0.98 3.4E-05 45.3 9.4 67 79-145 206-279 (329)
65 3ab4_A Aspartokinase; aspartat 89.9 1.2 4E-05 45.4 9.5 115 316-437 266-390 (421)
66 1rwu_A Hypothetical UPF0250 pr 88.6 2.9 0.0001 35.8 9.6 70 313-385 35-108 (109)
67 4go7_X Aspartokinase; transfer 87.4 0.82 2.8E-05 42.7 5.9 123 85-218 42-178 (200)
68 2lqj_A Mg2+ transport protein; 86.7 6.6 0.00023 32.5 10.4 72 314-386 8-84 (94)
69 2h9z_A Hypothetical protein HP 85.7 2.5 8.6E-05 34.4 7.3 70 313-385 14-85 (86)
70 3c1m_A Probable aspartokinase; 85.0 4.6 0.00016 41.8 10.6 126 80-214 319-464 (473)
71 2qrr_A Methionine import ATP-b 84.4 2.9 9.9E-05 34.2 7.2 60 163-222 25-97 (101)
72 2nzc_A Hypothetical protein; s 84.3 5.1 0.00017 33.1 8.5 71 76-146 4-76 (86)
73 3dhx_A Methionine import ATP-b 84.2 2.8 9.7E-05 34.8 7.1 61 162-222 22-95 (106)
74 3ced_A Methionine import ATP-b 82.7 1.9 6.4E-05 35.6 5.3 61 163-223 22-96 (98)
75 3tvi_A Aspartokinase; structur 80.3 7.5 0.00026 40.3 10.0 117 87-214 309-434 (446)
76 2qsw_A Methionine import ATP-b 77.4 7.8 0.00027 31.6 7.4 60 163-222 25-97 (100)
77 3c1m_A Probable aspartokinase; 77.3 2.3 7.8E-05 44.0 5.1 50 322-377 329-378 (473)
78 3trg_A Acylphosphatase; fatty 76.7 3.7 0.00013 34.1 5.3 45 171-215 26-72 (98)
79 2cdq_A Aspartokinase; aspartat 73.4 13 0.00044 39.2 9.6 68 323-406 353-428 (510)
80 3l76_A Aspartokinase; alloster 72.3 9.8 0.00034 40.7 8.5 127 85-218 451-590 (600)
81 1q5y_A NIKR, nickel responsive 70.0 30 0.001 27.7 9.1 71 315-386 6-77 (85)
82 2wvf_A Hpnikr, putative nickel 70.0 30 0.001 30.6 9.9 74 314-388 65-139 (148)
83 3tvi_A Aspartokinase; structur 69.6 7.4 0.00025 40.3 6.7 103 322-437 309-422 (446)
84 3mgj_A Uncharacterized protein 68.2 8.6 0.00029 33.6 5.7 54 325-379 15-71 (118)
85 2fhm_A Probable acylphosphatas 68.1 8.7 0.0003 31.1 5.5 45 171-215 16-62 (91)
86 1ulr_A Putative acylphosphatas 67.6 10 0.00035 30.6 5.8 44 171-214 16-61 (88)
87 1gtd_A MTH169; synthetase, FGA 65.6 10 0.00034 30.6 5.3 55 315-376 3-66 (85)
88 2cdq_A Aspartokinase; aspartat 65.3 31 0.0011 36.2 10.4 114 87-214 352-479 (510)
89 2rjz_A PILO protein; structura 64.5 13 0.00044 32.9 6.3 66 88-153 43-113 (147)
90 2dgb_A Hypothetical protein PU 64.3 14 0.00048 29.6 6.0 44 315-365 4-51 (84)
91 1urr_A CG18505 protein; acylph 63.0 12 0.0004 31.1 5.5 45 171-215 25-71 (102)
92 1rwu_A Hypothetical UPF0250 pr 62.7 45 0.0015 28.4 9.1 69 77-148 34-108 (109)
93 1w2i_A Acylphosphatase; hydrol 62.7 10 0.00035 30.8 5.0 44 171-214 18-63 (91)
94 1gtd_A MTH169; synthetase, FGA 62.1 11 0.00038 30.3 5.0 44 80-128 3-50 (85)
95 2bjd_A Acylphosphatase; hypert 62.1 11 0.00039 31.3 5.2 45 171-215 28-74 (101)
96 2vh7_A Acylphosphatase-1; hydr 59.6 13 0.00044 30.7 5.0 44 171-214 22-67 (99)
97 2dgb_A Hypothetical protein PU 58.9 17 0.00059 29.1 5.6 44 80-128 4-51 (84)
98 1q5y_A NIKR, nickel responsive 58.2 53 0.0018 26.3 8.4 71 80-150 6-78 (85)
99 2hza_A Nickel-responsive regul 57.7 91 0.0031 26.7 10.7 74 313-387 52-126 (133)
100 1aps_A Acylphosphatase; hydrol 55.7 12 0.0004 30.9 4.2 45 171-215 21-67 (98)
101 2wvf_A Hpnikr, putative nickel 55.4 59 0.002 28.7 9.0 73 78-150 64-138 (148)
102 1t4a_A PURS; tetramer, complex 54.7 24 0.00081 28.3 5.7 54 316-376 3-65 (84)
103 2gv1_A Probable acylphosphatas 54.5 18 0.0006 29.4 5.0 43 171-213 18-62 (92)
104 2rjz_A PILO protein; structura 54.1 27 0.00092 30.7 6.5 67 323-389 43-112 (147)
105 2zw2_A Putative uncharacterize 53.8 27 0.00093 28.6 6.1 58 311-376 3-70 (92)
106 2lqj_A Mg2+ transport protein; 53.7 35 0.0012 28.1 6.7 72 77-149 6-84 (94)
107 2lxf_A Uncharacterized protein 53.2 13 0.00044 32.3 4.2 45 171-215 48-94 (121)
108 2hza_A Nickel-responsive regul 53.0 61 0.0021 27.8 8.5 73 78-150 52-126 (133)
109 1tdj_A Biosynthetic threonine 50.4 41 0.0014 35.4 8.3 77 313-394 337-415 (514)
110 2h9z_A Hypothetical protein HP 50.2 39 0.0013 27.3 6.4 68 78-148 14-85 (86)
111 3mgj_A Uncharacterized protein 50.1 32 0.0011 29.9 6.2 53 90-142 15-71 (118)
112 1o51_A Hypothetical protein TM 46.6 15 0.00051 31.4 3.5 45 182-231 62-107 (114)
113 1t4a_A PURS; tetramer, complex 46.5 35 0.0012 27.3 5.5 54 81-139 3-65 (84)
114 1vq3_A Phosphoribosylformylgly 44.7 72 0.0024 26.5 7.3 55 315-376 16-80 (94)
115 2j0w_A Lysine-sensitive aspart 44.7 24 0.00083 36.3 5.4 77 314-406 306-394 (449)
116 2bj7_A Nickel responsive regul 43.8 1.6E+02 0.0054 25.4 11.0 75 312-387 53-128 (138)
117 2zw2_A Putative uncharacterize 43.1 42 0.0015 27.4 5.6 45 79-128 5-54 (92)
118 2bj7_A Nickel responsive regul 42.3 1.2E+02 0.0042 26.1 8.8 74 77-150 53-128 (138)
119 2hh2_A KH-type splicing regula 41.0 38 0.0013 28.0 5.1 42 174-216 27-76 (107)
120 2yx5_A UPF0062 protein MJ1593; 40.7 28 0.00094 27.8 4.0 54 316-376 3-66 (83)
121 1vq3_A Phosphoribosylformylgly 39.4 85 0.0029 26.0 6.9 44 80-128 16-64 (94)
122 1jo0_A Hypothetical protein HI 37.9 1.7E+02 0.0059 24.2 8.6 36 400-435 46-85 (98)
123 2dcl_A Hypothetical UPF0166 pr 36.9 23 0.00078 30.8 3.2 46 182-232 58-104 (127)
124 2p2r_A Poly(RC)-binding protei 36.0 58 0.002 24.9 5.1 41 174-215 25-70 (76)
125 1tdj_A Biosynthetic threonine 33.9 1.2E+02 0.0041 31.9 8.7 116 78-218 337-460 (514)
126 2j0w_A Lysine-sensitive aspart 32.9 51 0.0018 33.9 5.6 78 79-170 306-395 (449)
127 1jo0_A Hypothetical protein HI 32.5 2E+02 0.0068 23.8 8.2 51 128-197 30-84 (98)
128 1wvn_A Poly(RC)-binding protei 32.3 71 0.0024 24.8 5.2 42 174-216 26-72 (82)
129 3dhx_A Methionine import ATP-b 31.8 1.6E+02 0.0054 24.1 7.4 58 327-385 37-94 (106)
130 1vr9_A CBS domain protein/ACT 31.1 10 0.00035 34.0 0.0 58 317-377 141-198 (213)
131 1x4n_A FAR upstream element bi 30.5 78 0.0027 25.3 5.2 41 174-215 35-80 (92)
132 1dtj_A RNA-binding neurooncolo 29.6 1E+02 0.0035 23.2 5.6 41 174-215 23-71 (76)
133 1zzk_A Heterogeneous nuclear r 29.2 1.2E+02 0.0041 23.5 6.0 41 174-215 27-72 (82)
134 1vig_A Vigilin; RNA-binding pr 28.1 98 0.0034 23.5 5.2 55 160-215 3-68 (71)
135 3krm_A Insulin-like growth fac 28.1 49 0.0017 28.5 3.9 42 173-215 104-152 (163)
136 1j5k_A Heterogeneous nuclear r 27.5 79 0.0027 25.0 4.7 41 174-215 34-79 (89)
137 1rq8_A Conserved hypothetical 27.4 2.3E+02 0.008 23.8 7.8 54 365-437 29-86 (104)
138 2axy_A Poly(RC)-binding protei 27.3 75 0.0026 24.2 4.4 40 174-214 25-67 (73)
139 1ec6_A RNA-binding protein NOV 26.1 1.4E+02 0.0047 23.3 5.9 41 174-215 23-71 (87)
140 2hh3_A KH-type splicing regula 25.5 1E+02 0.0035 25.6 5.2 42 174-216 31-77 (106)
141 3lh2_S 4E10_1VI7A_S0_002_N (T8 24.8 28 0.00095 26.8 1.5 56 161-216 7-63 (76)
142 2jvz_A KH type-splicing, FAR u 24.5 2.4E+02 0.0081 23.9 7.6 41 174-215 111-156 (164)
143 1ib8_A Conserved protein SP14. 22.6 4E+02 0.014 23.6 11.4 102 92-201 14-139 (164)
144 1rq8_A Conserved hypothetical 20.8 1.8E+02 0.0063 24.4 5.9 54 128-198 29-84 (104)
145 2qsw_A Methionine import ATP-b 20.6 3.2E+02 0.011 21.7 7.4 55 325-380 37-91 (100)
146 1we8_A Tudor and KH domain con 20.1 1.5E+02 0.0051 24.1 5.1 41 174-215 35-82 (104)
No 1
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.7e-50 Score=379.22 Aligned_cols=158 Identities=39% Similarity=0.634 Sum_probs=153.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCC-
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN- 153 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~- 153 (450)
+|+|+|+++++|+||+|+||+++|++|||||+||++++++++++ |||+|+++++.++||.+||+||+||++|.++++
T Consensus 27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~ 106 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL 106 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 57999999999999999999999999999999999999999975 899999999999999999999999999999999
Q ss_pred -chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 013068 154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (450)
Q Consensus 154 -~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg 232 (450)
.++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||.+||.||
T Consensus 107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg 185 (193)
T 2fgc_A 107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW 185 (193)
T ss_dssp GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 013068 233 KLG 235 (450)
Q Consensus 233 ~~~ 235 (450)
+..
T Consensus 186 ~~~ 188 (193)
T 2fgc_A 186 NVK 188 (193)
T ss_dssp CC-
T ss_pred Ccc
Confidence 754
No 2
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=6.3e-50 Score=367.20 Aligned_cols=158 Identities=41% Similarity=0.633 Sum_probs=153.7
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
.|+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+++++++.++||.+||+||+||++|.++++.
T Consensus 2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~ 81 (165)
T 2pc6_A 2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE 81 (165)
T ss_dssp CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 46899999999999999999999999999999999999998874 8999999999999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 013068 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (450)
Q Consensus 155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~ 234 (450)
++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||.+||.||+.
T Consensus 82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~ 161 (165)
T 2pc6_A 82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER 161 (165)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=3.2e-49 Score=361.91 Aligned_cols=158 Identities=37% Similarity=0.653 Sum_probs=153.4
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++. ||++++++++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 67999999999999999999999999999999999999998864 8999999999999999999999999999999999
Q ss_pred hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 013068 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK 233 (450)
Q Consensus 155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAl~Rg~ 233 (450)
++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999997
Q ss_pred C
Q 013068 234 L 234 (450)
Q Consensus 234 ~ 234 (450)
.
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.5e-44 Score=338.93 Aligned_cols=148 Identities=32% Similarity=0.552 Sum_probs=131.6
Q ss_pred ccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068 297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (450)
Q Consensus 297 l~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL 376 (450)
.|++||-+.+. +|+|+|+++|+|+||+|+||+++|+||||||+||++++++++++|||||+|+|+++.++||.|||
T Consensus 16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL 91 (193)
T 2fgc_A 16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA 91 (193)
T ss_dssp ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHH
T ss_pred chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 68999988553 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCEEEEEecCC--ChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068 377 HKLIDLHEVQDITH--LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL 449 (450)
Q Consensus 377 ~KLidVi~V~dlt~--~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L 449 (450)
+||+||++|.++++ .++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++|++ |++.|
T Consensus 92 ~KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l 166 (193)
T 2fgc_A 92 YKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLL 166 (193)
T ss_dssp TTSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHS
T ss_pred cCcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHh
Confidence 99999999999999 999999999999999988 99999999999999999999999999999999984 55544
No 5
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=3.8e-42 Score=315.64 Aligned_cols=138 Identities=34% Similarity=0.575 Sum_probs=132.5
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~ 391 (450)
-|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++++++.++||.+||+||+||++|.++++.
T Consensus 2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~ 81 (165)
T 2pc6_A 2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE 81 (165)
T ss_dssp CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL 449 (450)
Q Consensus 392 ~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L 449 (450)
++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++ |++.|
T Consensus 82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l 140 (165)
T 2pc6_A 82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAV 140 (165)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHS
T ss_pred ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999984 44444
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.4e-41 Score=311.28 Aligned_cols=138 Identities=32% Similarity=0.531 Sum_probs=132.3
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~ 391 (450)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++++++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL 449 (450)
Q Consensus 392 ~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L 449 (450)
++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++ |++.|
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l 139 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASI 139 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHH
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 44443
No 7
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.18 E-value=1.5e-09 Score=98.88 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=52.6
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K 141 (450)
+++|+|+..|+||++++|+++|+++|+||..+....+.+.-.+++++.+++...++|.++|.+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 68 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPL 68 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999887554334778787666677777777744
No 8
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.06 E-value=3.9e-09 Score=91.84 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=87.4
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~ 155 (450)
.||.|+|+++++|+||+|+||+++|+++|+||++++++++.+++.++++++ +.+...++.++..-.+...
T Consensus 3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~-d~~~a~~~L~~~G~~v~~~--------- 72 (144)
T 2f06_A 3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS-DPDKAYKALKDNHFAVNIT--------- 72 (144)
T ss_dssp SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES-CHHHHHHHHHHTTCCEEEE---------
T ss_pred ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC-CHHHHHHHHHHcCCeEeee---------
Confidence 588999999999999999999999999999999999998888886666654 4445555555442211111
Q ss_pred hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 013068 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI 218 (450)
Q Consensus 156 ~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVD---v-s~~--sl~iEvTG~~~KIdafi~~L~~fGI 218 (450)
.+.-+.++-.|..-.++.++....+..|.. . ++. +++++. +..+..++.|+.-|.
T Consensus 73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV 133 (144)
T ss_dssp ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence 334446666667777888888878888833 2 333 344555 356666777776664
No 9
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.88 E-value=1.9e-08 Score=79.37 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=66.6
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~dlt~~ 391 (450)
.+.|.+.+.|+||+|++|+++|++.|+||.++.+....+ ...+++.+. .+...++++.++|+++.+|.+|..+..-
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~ 81 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL 81 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 578999999999999999999999999999999987543 778888876 4567899999999999999999877654
No 10
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.85 E-value=3.9e-08 Score=85.49 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
..||.|.|++.++|+||+|++|+++|+++|+||++++++++.++++.|++ + .+.+...++.++..-.+...
T Consensus 2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~v~~~------ 72 (144)
T 2f06_A 2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFAVNIT------ 72 (144)
T ss_dssp CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCCEEEE------
T ss_pred CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCeEeee------
Confidence 35889999999999999999999999999999999999988887888887 2 45555666555542211111
Q ss_pred CChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEE
Q 013068 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVD 426 (450)
Q Consensus 390 ~~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVD 426 (450)
.+.-+.+.-.+..-.++.++....+.+|..
T Consensus 73 -------svv~v~~~d~pGvla~i~~~L~~~~InI~~ 102 (144)
T 2f06_A 73 -------DVVGISCPNVPGALAKVLGFLSAEGVFIEY 102 (144)
T ss_dssp -------EEEEEEEESSTTHHHHHHHHHHHTTCCEEE
T ss_pred -------eEEEEEeCCCCcHHHHHHHHHHHCCCCEEE
Confidence 233345555555556777777777777743
No 11
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.71 E-value=9.5e-08 Score=75.33 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=63.9
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...++++.++|+++-+|.+|..+..-
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~ 81 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL 81 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3568999999999999999999999999999999987654223555554 4567899999999999999999877653
No 12
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.63 E-value=1.6e-07 Score=85.52 Aligned_cols=114 Identities=11% Similarity=0.169 Sum_probs=84.2
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccC----EEEEEecC
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID----LHEVQDIT 389 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLid----Vi~V~dlt 389 (450)
++.|++...|+||++++|+++++++|+||.++....+ .+...|++++.+++...++|.++|.++.+ .+.+...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5899999999999999999999999999999888774 46777788887766678999999887653 55566655
Q ss_pred CChhHHHhhheeEeecCccchH----HHHHHHHhcCcEEEEecCC
Q 013068 390 HLPFAERELILIKIAVNTAARR----DVLDIAKIFRARAVDVSDH 430 (450)
Q Consensus 390 ~~~~V~REL~LIKV~~~~~~R~----eI~~i~~iFrakIVDvs~~ 430 (450)
..+ -.++....++.+....|+ +|.++...+++.|.++...
T Consensus 84 ~~~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 84 PHD-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp CCC-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCC-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 443 255555555655444554 4555566677877776443
No 13
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.62 E-value=9.9e-08 Score=76.36 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=58.6
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-hhHHHHHHHHHhcccCE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLIDL 382 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-~~~ieQI~kQL~KLidV 382 (450)
++++|++...|+||+|++|+++++.+|+||.++...... +...+++.+... ...+++|.++|+++-+-
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998775 778888877643 35799999999987653
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.48 E-value=1.8e-07 Score=74.78 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=56.5
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hHHHHHHHHHhhcCceeeE
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIK 147 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd-e~~ieqL~kQL~KLiDVi~ 147 (450)
|.+.|++...|+||+|++|+++++++|+||.++......+...+++.+..+ ...+++|.++|+++-+...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~ 74 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN 74 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999998765323356555432 3578999999988765533
No 15
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.21 E-value=5.9e-05 Score=69.31 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=55.6
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC----CCCeeEEEEEEeC-ChhHHHHHHHHHhcc----cCEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPG-TDESIGKLVQLLHKL----IDLH 383 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te----~~~iSRiTIVV~g-d~~~ieQI~kQL~KL----idVi 383 (450)
.+|+|.+...|+||++++|+++|+++|.||..+...... ..+.-.|.+.+.. +... ++|.+.|.++ -=-+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~di 170 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGVDI 170 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCeEE
Confidence 368999999999999999999999999999998877543 3466667766653 2334 7777777643 2234
Q ss_pred EEEecCCC
Q 013068 384 EVQDITHL 391 (450)
Q Consensus 384 ~V~dlt~~ 391 (450)
++.++++.
T Consensus 171 ~~~~~~~~ 178 (195)
T 2nyi_A 171 DLEEVVEG 178 (195)
T ss_dssp EEEECC--
T ss_pred EEEECccc
Confidence 55565544
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.99 E-value=2.2e-05 Score=75.26 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=65.1
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC---CCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK---EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~---~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
|..+|.+..+|+||+|+.|+.+++..+.||.++++..... .+...|+|-++.. .++.++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 4679999999999999999999999999999999977651 4788899666644 9999999999999999999886
Q ss_pred CChhHH
Q 013068 390 HLPFAE 395 (450)
Q Consensus 390 ~~~~V~ 395 (450)
.-.-++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 554443
No 17
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.71 E-value=9.8e-05 Score=70.82 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=61.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CC-cEEEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te----d~-~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
|..+|.+..+|+||+|+.|+.+++..+.||.++++.... +. ..+++-++.. .++.++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 567999999999999999999999999999999997764 31 2466556544 9999999999999999999886
Q ss_pred Cchhhh
Q 013068 153 NEPHVE 158 (450)
Q Consensus 153 ~~~~V~ 158 (450)
.-..++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 654444
No 18
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.36 E-value=0.0026 Score=54.83 Aligned_cols=101 Identities=13% Similarity=0.250 Sum_probs=74.1
Q ss_pred EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEEecCCChhH
Q 013068 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (450)
Q Consensus 316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V 394 (450)
.|.|...|++|+|+.|+.+++..+.||.++.+.+. +. +.+.++ .+.+.+.++..+++++-++..+....-.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~~~- 75 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPS- 75 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCCTT-
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCCcc-
Confidence 47899999999999999999999999999999665 54 555555 466789999999999999999887654332
Q ss_pred HHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEE
Q 013068 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434 (450)
Q Consensus 395 ~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~i 434 (450)
...+..+..+.+....-|+-+..+.-++
T Consensus 76 ------------~~~~~~l~~il~~~~~gvi~~D~~g~I~ 103 (190)
T 2jhe_A 76 ------------EREHLALSALLEALPEPVLSVDMKSKVD 103 (190)
T ss_dssp ------------THHHHHHHHHHHHCSSCEEEECTTCBEE
T ss_pred ------------HHHHHHHHHHHHhCCCcEEEEcCCCCEE
Confidence 1222345555555555555555544444
No 19
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=97.18 E-value=0.00081 Score=69.93 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=57.5
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEe-CChhHHHHHHHHHhcccCEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH 383 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi 383 (450)
.+|.|.+.|.|+||||.+|+++|+..|++|+|+.-.+.. ..+...+.|+++ ..+..+++.+++|++|-.|.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 579999999999999999999999999999998876543 233478888887 47778999999999987653
No 20
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.11 E-value=0.0046 Score=53.33 Aligned_cols=69 Identities=12% Similarity=0.304 Sum_probs=58.2
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecC
Q 013068 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS 152 (450)
Q Consensus 81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt 152 (450)
.|.|...|++|+|+.|+.+++..++||.++.+.+. +.+.+.+. .+.+.+..|..+++++-++..+....
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~ 71 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence 47899999999999999999999999999999655 54555554 45678999999999999999887644
No 21
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=97.10 E-value=0.0019 Score=66.11 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=62.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
..+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.+++.+-+++....-+.+.++|+++-.|++|..+
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 35678899999999999999999999999999999985554567777877644667899999999999998754
No 22
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=97.02 E-value=0.0036 Score=64.06 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=63.5
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
.+.|.+.=+|+||++.+|+.+|++.|+||.++.++. ..+..-|.+-+++....-+.+.++|+++..|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 456888889999999999999999999999999998 6678878888887644667999999999999999754
No 23
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=96.92 E-value=0.0048 Score=55.13 Aligned_cols=126 Identities=13% Similarity=0.207 Sum_probs=77.6
Q ss_pred EEEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCCc
Q 013068 79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE 154 (450)
Q Consensus 79 ~~tISVl-VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~~ 154 (450)
...|+++ +.|+||.+.+|.+.|++.|+||+.++.+.+.+ | .++++++.++ +...++.+++.+-.....+
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i------ 97 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI------ 97 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE------
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE------
Confidence 3467777 89999999999999999999999999876654 4 4888887533 2233333333222222111
Q ss_pred hhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 155 PHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 155 ~~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
.+.+.++++-|-... .--..+++....++..| +..++.++.+=+- .+..+..++.|.
T Consensus 98 -~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv~--~~d~~~av~~Lh 161 (167)
T 2re1_A 98 -DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLID--EKYMELATRVLH 161 (167)
T ss_dssp -EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEE--GGGHHHHHHHHH
T ss_pred -EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEe--HHHHHHHHHHHH
Confidence 245677888876543 23457888887777777 4445565555553 344445555443
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.83 E-value=0.0031 Score=57.77 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=50.7
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CCcE--EEEEEeCC-hHHHHHHHHHhhcC
Q 013068 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSGT-ERVLRQVVEQLNKL 142 (450)
Q Consensus 74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te----d~~i--iTIVV~gd-e~~ieqL~kQL~KL 142 (450)
.....+++|.|.-.|+||++.+|+++|+++|.||..+...... ..++ |++.+..+ ... ++|.+.|.++
T Consensus 88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV 162 (195)
T ss_dssp CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence 3345779999999999999999999999999999999887443 3344 55555432 334 6777766543
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.76 E-value=0.0036 Score=62.10 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=54.3
Q ss_pred CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhc
Q 013068 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK 378 (450)
Q Consensus 310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~K 378 (450)
.|+.+++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.++ ..+++|...|..
T Consensus 18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP 88 (302)
T ss_dssp CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence 578889999999999999999999999999999999887655566666666666432 346666666643
No 26
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=96.72 E-value=0.097 Score=56.12 Aligned_cols=223 Identities=14% Similarity=0.196 Sum_probs=124.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCCh-HHHHHHHHHhhcCc-------eeeEEE
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTE-RVLRQVVEQLNKLV-------NVIKVE 149 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-iiTIVV~gde-~~ieqL~kQL~KLi-------DVi~V~ 149 (450)
.-+|. .+.++||.+.||-+.|++.|+||+-++.+..+... -+++++..++ ....++.+++.+-+ ...+|.
T Consensus 272 ~i~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~ 350 (600)
T 3l76_A 272 KVALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII 350 (600)
T ss_dssp EEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE
T ss_pred EEEEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE
Confidence 33444 56789999999999999999999999877655432 3777776543 22233333332211 112222
Q ss_pred ecCCchhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEee
Q 013068 150 DISNEPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELAR 223 (450)
Q Consensus 150 dlt~~~~V~RELaLIKV~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~-fGIlEiaR 223 (450)
+.+.+++|-|--. +.--..+++.....+.+|.-++.....|-+.=+.+..+..++.|.. |..-.
T Consensus 351 -------~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~--- 420 (600)
T 3l76_A 351 -------VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL--- 420 (600)
T ss_dssp -------EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB---
T ss_pred -------ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC---
Confidence 4456777776533 2233456666666665654443333333344444455555555543 22110
Q ss_pred ccceeeecCcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccc
Q 013068 224 TGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGI 303 (450)
Q Consensus 224 TG~iAl~Rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~vl~~~~~~ 303 (450)
+. .. .+ -++.| .++.. |+
T Consensus 421 -------------t~------------------------------~~--------~~-~~~~~-------~~~v~---Gi 438 (600)
T 3l76_A 421 -------------SP------------------------------PK--------NQ-TDTSH-------LPAVR---GV 438 (600)
T ss_dssp -------------CC------------------------------CC--------CC-CC----------CCSCC---EE
T ss_pred -------------CC------------------------------cc--------cc-ccccc-------cCceE---EE
Confidence 00 00 00 00000 11111 22
Q ss_pred cccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC--CC--eeEEEEEEeCCh-hHHHHHHHHHhc
Q 013068 304 LYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EG--LSCITTVVPGTD-ESIGKLVQLLHK 378 (450)
Q Consensus 304 ~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~--~~--iSRiTIVV~gd~-~~ieQI~kQL~K 378 (450)
-.+.+.. +-++. -+.|+||+..||-+.+++.|+|++-+.....+. .+ ...|+++++.++ +...++.+++.+
T Consensus 439 a~~~~~a---~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~ 514 (600)
T 3l76_A 439 ALDQDQA---QIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIK 514 (600)
T ss_dssp EEECSEE---EEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred EeeCCEE---EEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHH
Confidence 2222322 23443 589999999999999999999999999988764 24 678999998432 234444444443
No 27
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.60 E-value=0.0049 Score=60.84 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC----hhHHHHHHHHHhc
Q 013068 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLLHK 378 (450)
Q Consensus 309 ~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd----~~~ieQI~kQL~K 378 (450)
+..|++++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.+ ...++++...|+.
T Consensus 5 ~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 5 PQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp ---CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 344668999999999999999999999999999999988754445555555555443 2346666666543
No 28
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=96.49 E-value=0.011 Score=61.19 Aligned_cols=73 Identities=15% Similarity=0.274 Sum_probs=61.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
.|.|.+.=+|.||+|.+|+.+|+..|+||+...-....+-++.-+=+++.....+.+.++|+++-.|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 5789999999999999999999999999999997666666665555653355678999999999999998754
No 29
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.49 E-value=0.0061 Score=60.51 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=52.8
Q ss_pred ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhc
Q 013068 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (450)
Q Consensus 75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~K 141 (450)
+++++++|++.-.|+||..++||+.++.+|.||..++.......++ |++.++.++ ...++|.+.|+.
T Consensus 18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP 88 (302)
T ss_dssp CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence 4678899999999999999999999999999999999876555666 566666433 346666666543
No 30
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.47 E-value=0.007 Score=59.48 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=49.8
Q ss_pred ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-hHHHHHHHHHh
Q 013068 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLH 377 (450)
Q Consensus 312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-~~ieQI~kQL~ 377 (450)
|.+++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.++ ..++++...|.
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence 4568999999999999999999999999999999987545556655666665422 24555655553
No 31
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.43 E-value=0.0057 Score=64.25 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=61.3
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
.|+|-+...|+||++.+|+.++...|+||.++.++..+..+..=|.|.++.. .-+.+.++|.++.+|.+|..+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence 3899999999999999999999999999999999998887877788888743 335566777777788777654
No 32
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.42 E-value=0.0042 Score=65.26 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=57.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl 151 (450)
..|.|-+...|+||++.+|+.++...|+||..+.++.....+ ++.|.++.. .-+.+.++|.++-+|.+|..+
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence 358999999999999999999999999999999999876543 577777642 335566677777777776644
No 33
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.38 E-value=0.0082 Score=59.05 Aligned_cols=109 Identities=11% Similarity=0.165 Sum_probs=67.2
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhcc---cCE-EEEEe
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL---IDL-HEVQD 387 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~KL---idV-i~V~d 387 (450)
+++|++...|+||+.++||+.++.+|.||..++.-.+...+.--|.+.++.++ ..++++...|+.+ .++ +++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~ 85 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD 85 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence 58999999999999999999999999999999987555556555555554322 3466666666433 222 55555
Q ss_pred cCCChhHHHhhheeEeecCccchHHHHHHHH--hcCcEEEEe
Q 013068 388 ITHLPFAERELILIKIAVNTAARRDVLDIAK--IFRARAVDV 427 (450)
Q Consensus 388 lt~~~~V~REL~LIKV~~~~~~R~eI~~i~~--iFrakIVDv 427 (450)
-.... | ..|=++-.+.+-..+++-++ ...++|+-|
T Consensus 86 ~~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V 122 (288)
T 3obi_A 86 RETRR---K--VMLLVSQSDHCLADILYRWRVGDLHMIPTAI 122 (288)
T ss_dssp TTSCE---E--EEEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred cCCCc---E--EEEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence 43211 1 12223334444445554443 234555544
No 34
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.36 E-value=0.0073 Score=59.37 Aligned_cols=64 Identities=3% Similarity=-0.074 Sum_probs=49.0
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh-HHHHHHHHHhh
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE-RVLRQVVEQLN 140 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde-~~ieqL~kQL~ 140 (450)
|++++|++.-.|+||..++||+.|+.+|.||..++.......+. |++.++.++ ...++|.+.++
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence 55689999999999999999999999999999999875455565 666666432 34566665553
No 35
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.33 E-value=0.0073 Score=59.58 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=50.3
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC----hHHHHHHHHHhhc
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLNK 141 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gd----e~~ieqL~kQL~K 141 (450)
.+++++|++.-.|+||..++||+.++.+|.||..++.......+. |++.++.+ ....++|...++.
T Consensus 7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999875455565 56666544 2346666665543
No 36
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.29 E-value=0.0097 Score=58.51 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=68.5
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc---cCE-EEEEec
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDL-HEVQDI 388 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL---idV-i~V~dl 388 (450)
++++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.++.+...++++...|+.+ .++ +++.+-
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~~ 85 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFRPR 85 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEeecc
Confidence 4689999999999999999999999999999999876556677667777765433344555555332 222 556554
Q ss_pred CCChhHHHhhheeEeecCccchHHHHHHHH--hcCcEEEEe
Q 013068 389 THLPFAERELILIKIAVNTAARRDVLDIAK--IFRARAVDV 427 (450)
Q Consensus 389 t~~~~V~REL~LIKV~~~~~~R~eI~~i~~--iFrakIVDv 427 (450)
.... | ..|=++-.+.+-..+++-++ ...++|+-|
T Consensus 86 ~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V 121 (287)
T 3nrb_A 86 TDRK---K--VVIMVSKFDHCLGDLLYRHRLGELDMEVVGI 121 (287)
T ss_dssp TCCC---E--EEEEECSCCHHHHHHHHHHHHTSSCCEEEEE
T ss_pred CCCc---E--EEEEEeCCCcCHHHHHHHHHCCCCCeEEEEE
Confidence 3221 1 12223334444445554443 235666654
No 37
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=96.29 E-value=0.0069 Score=62.95 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=56.2
Q ss_pred ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-C--CcEEEEEEe-CChHHHHHHHHHhhcCceee
Q 013068 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-D--KALFTIVVS-GTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d--~~iiTIVV~-gde~~ieqL~kQL~KLiDVi 146 (450)
+-..+|.|.+.+.|+||||.+|+++|+..|++|+|+.-.+.. . ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus 355 ~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 355 AVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp GCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred HcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 345789999999999999999999999999999999876542 1 123555565 56888999999999986654
No 38
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.19 E-value=0.01 Score=58.39 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=49.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhh
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLN 140 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~ 140 (450)
.+++|++.-.|+||..++||+.++.+|.||..++...+...+. |++.++.++ ...++|.+.|+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~ 71 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG 71 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence 3689999999999999999999999999999999875555665 556565433 35666666663
No 39
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.03 E-value=0.013 Score=57.73 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=46.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHh
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL 139 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL 139 (450)
++++|++.-.|+||..++||+.++.+|.||..++...+...++ |++.++.+....++|.+.+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f 69 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF 69 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999876566676 5666665432333444444
No 40
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=95.82 E-value=0.02 Score=51.12 Aligned_cols=113 Identities=10% Similarity=0.135 Sum_probs=70.4
Q ss_pred EEEEE-EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCChh
Q 013068 316 TLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPF 393 (450)
Q Consensus 316 tLSil-VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~~ 393 (450)
.|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +...++++++.++ +...++.+++.+-+.... -.
T Consensus 27 ~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~-------i~ 98 (167)
T 2re1_A 27 RINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAAS-------ID 98 (167)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSE-------EE
T ss_pred EEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCce-------EE
Confidence 45665 79999999999999999999999999876654 6677999998543 223333333322222211 12
Q ss_pred HHHhhheeEeecCc-----cchHHHHHHHHhcCcEEE--EecCCEEEEEE
Q 013068 394 AERELILIKIAVNT-----AARRDVLDIAKIFRARAV--DVSDHTITLEV 436 (450)
Q Consensus 394 V~REL~LIKV~~~~-----~~R~eI~~i~~iFrakIV--Dvs~~si~iE~ 436 (450)
+.+.+++|-|-... .--..+++....++-+|. ..+..++.+=+
T Consensus 99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv 148 (167)
T 2re1_A 99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI 148 (167)
T ss_dssp EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE
T ss_pred ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE
Confidence 34567777775543 123477777777777774 44555555544
No 41
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.76 E-value=0.079 Score=52.78 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=86.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChH--HHHHHHHHhhcCc---e-eeEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKV 148 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~--~ieqL~kQL~KLi---D-Vi~V 148 (450)
.+++.|++.-.|+||+.++|++.++++|.||..+.... ..+. |.+.+..++. ..++|.+.|..+- . -+++
T Consensus 10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 87 (415)
T 3p96_A 10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSI 87 (415)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEE
Confidence 35689999999999999999999999999999998765 3355 5556665553 3467777665542 2 2344
Q ss_pred EecCCchhhhh-heeeEEEeCC---CCCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCChh---HHH-HHHHHhc
Q 013068 149 EDISNEPHVER-ELMLIKLNGD---TSTWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDPG---KMV-AVQRNLS 214 (450)
Q Consensus 149 ~dlt~~~~V~R-ELaLIKV~~~---~~~r~eI~~l~~~frAkIVDvs~~s------l~iEvTG~~~---KId-afi~~L~ 214 (450)
...+......+ ...++-+-.. +..-.+|..+...++.+|-++..-+ +-+.+.+++. .+. ++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~ 167 (415)
T 3p96_A 88 ERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSS 167 (415)
T ss_dssp EECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhh
Confidence 44444322222 2333333222 2334466666666779888775544 3355656543 333 3444455
Q ss_pred cCCc
Q 013068 215 KFGI 218 (450)
Q Consensus 215 ~fGI 218 (450)
.+++
T Consensus 168 ~~~v 171 (415)
T 3p96_A 168 EEHV 171 (415)
T ss_dssp HHTC
T ss_pred hcCc
Confidence 6675
No 42
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=95.67 E-value=0.043 Score=56.70 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=59.1
Q ss_pred EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
.|-|.+.=+|.||+|.+|+.+|+..|+||+...-....+ +.-..+=+++-.+.-+.+.++|+++..|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~--~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE--VGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS--CEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc--eEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 478999999999999999999999999999988665544 4334444443356778999999999999999754
No 43
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.64 E-value=0.092 Score=52.32 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=75.6
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--HHHHHHHHHhcc---cC-EEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKL---ID-LHEVQ 386 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--~ieQI~kQL~KL---id-Vi~V~ 386 (450)
.+++|++...|+||+.++|++.++++|.||..+..... .+.--|.+.+..++. ..++|.+.|..+ .. -+++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 46799999999999999999999999999999888653 455556666665443 346777776554 22 35666
Q ss_pred ecCCChhHHH-hhheeEeecCc---cchHHHHHHHHhcCcEEEEecCCE
Q 013068 387 DITHLPFAER-ELILIKIAVNT---AARRDVLDIAKIFRARAVDVSDHT 431 (450)
Q Consensus 387 dlt~~~~V~R-EL~LIKV~~~~---~~R~eI~~i~~iFrakIVDvs~~s 431 (450)
+.+..+...+ ...++-+-... ..-.+|.++...++.+|-++..-+
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~ 137 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS 137 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc
Confidence 6555432222 23344443332 222355555555678888776544
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=95.22 E-value=0.2 Score=45.18 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=76.4
Q ss_pred EEEEE-EEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCc-EEEEEEeCChHHHHHHHHHhhcC---ceeeEEEecC
Q 013068 80 HTISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKA-LFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDIS 152 (450)
Q Consensus 80 ~tISV-lVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~-iiTIVV~gde~~ieqL~kQL~KL---iDVi~V~dlt 152 (450)
-.|+| .+.|+||.+.+|...|++.|+||+.++.+... +.+ .+++++..++ .++..+.|+++ .....+
T Consensus 16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~~v---- 89 (178)
T 2dtj_A 16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWTNV---- 89 (178)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCSEE----
T ss_pred EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCCeE----
Confidence 35566 57999999999999999999999999876432 222 3677666432 23334444443 222222
Q ss_pred CchhhhhheeeEEEeCCCC-CH----HHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 013068 153 NEPHVERELMLIKLNGDTS-TW----PEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (450)
Q Consensus 153 ~~~~V~RELaLIKV~~~~~-~r----~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~~-fG 217 (450)
.+.+++++|-|-.... .. ..+++.....+-.| +.-++.++.+=+ +.+..+..++.|.. |+
T Consensus 90 ---~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 90 ---LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 157 (178)
T ss_dssp ---EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred ---EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence 2456788888865432 22 25555555555565 444555544444 55666666666553 44
No 45
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=95.07 E-value=0.14 Score=50.27 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=59.7
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V 385 (450)
.+-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=++| ++..+.+..+.|++.-.-+++
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 3567888889999999999999999999999999999875 466667777776 456788999999887665554
No 46
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=94.23 E-value=0.18 Score=49.61 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=55.4
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHhhcCceeeE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIK 147 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~g--de~~ieqL~kQL~KLiDVi~ 147 (450)
-.+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + |-|-+.| ++..+++..+.|++...-++
T Consensus 198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~k 273 (283)
T 2qmx_A 198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVK 273 (283)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEE
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEE
Confidence 356678888899999999999999999999999999887754 3 3 4454554 56678888888887754433
No 47
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=94.10 E-value=0.17 Score=50.47 Aligned_cols=72 Identities=21% Similarity=0.373 Sum_probs=57.6
Q ss_pred CCceEEEEEEEE-eccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccC
Q 013068 310 SGLRSHTLSMLV-NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLID 381 (450)
Q Consensus 310 ~~~~~htLSilV-eN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLid 381 (450)
++-.|-+|.+.+ +|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+.| ++..+.+..+.|++.-.
T Consensus 197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~ 272 (313)
T 3mwb_A 197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
T ss_dssp CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence 444567888888 4999999999999999999999999999764 566677777776 45678888888877643
No 48
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=94.04 E-value=0.46 Score=42.07 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=68.1
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCChH-HHHHHHHHhhcCceeeEEEecCCchhhhhhe
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTER-VLRQVVEQLNKLVNVIKVEDISNEPHVEREL 161 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~--iiTIVV~gde~-~ieqL~kQL~KLiDVi~V~dlt~~~~V~REL 161 (450)
+.|+||.+.||.+.|++.|+||+.++.+.+. +.| .+++++..++. ...++.+++.+-... .+. +.+.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987653 344 48888875332 222222222111221 222 34566
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 162 MLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 162 aLIKV~~~~-----~~r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
+++-|-... .--..+++.....+-.| +..++. .+-+.=+.+..+..++.|..
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~--~is~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEV--RISVIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSS--EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCC--EEEEEEeHHHHHHHHHHHHH
Confidence 666664432 11234555555545555 433333 33333344555666665554
No 49
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=93.90 E-value=0.19 Score=44.27 Aligned_cols=50 Identities=6% Similarity=0.059 Sum_probs=42.7
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K 378 (450)
.++||++.|+.+.|++.|+||+-++.++. +++++++..+ .++++.+.|.+
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhc
Confidence 47899999999999999999999986542 8999998654 67888888877
No 50
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=93.82 E-value=0.37 Score=43.85 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=69.4
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCCchhhhhh
Q 013068 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (450)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~i--iTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RE 160 (450)
-+.|+||.+.||.+.|++.|+||+.++...++ +.+. ++++++.++ ....++.+++.+-....+|. +...
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence 47899999999999999999999999876554 2454 888887544 22333333332212222222 3456
Q ss_pred eeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 161 LaLIKV~~~~-~~----r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
+++|-|--.. .. -..+++.....+-+|.-++...+.|-+.=+.+..+..++.|.
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH 154 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALH 154 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence 7777764322 12 224455555445555444333333334444455555555554
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=93.78 E-value=0.14 Score=46.18 Aligned_cols=112 Identities=14% Similarity=0.240 Sum_probs=65.8
Q ss_pred EEEE-EEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhcc---cCEEEEEecCC
Q 013068 316 TLSM-LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITH 390 (450)
Q Consensus 316 tLSi-lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~KL---idVi~V~dlt~ 390 (450)
.|++ .+.|+||.+.+|...+++.|+||+-++.+.... .+-..|+++++.++ .++..+.|+++ .....+
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~~v----- 89 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWTNV----- 89 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCSEE-----
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCCeE-----
Confidence 3444 468999999999999999999999998764322 23667888887533 34444555543 222122
Q ss_pred ChhHHHhhheeEeecCcc-ch----HHHHHHHHhcCcEE--EEecCCEEEEEE
Q 013068 391 LPFAERELILIKIAVNTA-AR----RDVLDIAKIFRARA--VDVSDHTITLEV 436 (450)
Q Consensus 391 ~~~V~REL~LIKV~~~~~-~R----~eI~~i~~iFrakI--VDvs~~si~iE~ 436 (450)
.+..++++|-|-...- .+ ..+++.....+-+| +.-++.++.+=+
T Consensus 90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV 140 (178)
T 2dtj_A 90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI 140 (178)
T ss_dssp --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE
T ss_pred --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE
Confidence 2345677777754322 22 24444444444444 334444444433
No 52
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=93.67 E-value=0.24 Score=45.08 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=40.6
Q ss_pred EEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCCh
Q 013068 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD 366 (450)
Q Consensus 320 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~ 366 (450)
-+.|+||++.||.+.|++.|+||+-++...++ +.+...++++++.++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~ 70 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV 70 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH
Confidence 36899999999999999999999999877665 367888999998654
No 53
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=93.66 E-value=0.18 Score=49.24 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=54.0
Q ss_pred eEEEEEEEE---cCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E---EEEEEeCChHHHHHHHHHhhcCceeeE
Q 013068 78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIK 147 (450)
Q Consensus 78 ~~~tISVlV---eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i---iTIVV~gde~~ieqL~kQL~KLiDVi~ 147 (450)
.+-.|.+.+ .|+||.|.++.+.|+.||+|+..|---|+... + + +.+. +-++..+.+..+.|++...-++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~k 261 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVE 261 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEE
Confidence 455777788 89999999999999999999999999887654 2 3 3444 5566778888888887755444
No 54
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=93.61 E-value=0.28 Score=48.97 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=51.6
Q ss_pred cceEEEEEEEE-cCchhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChHHHHHHHHHhhcC
Q 013068 76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKL 142 (450)
Q Consensus 76 ~~~~~tISVlV-eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~i-iTIVV~g--de~~ieqL~kQL~KL 142 (450)
+..+-.|.+.+ +|+||.|.++.+.|+.||+|...|---|+... .+ |-|-+.| ++..+.+..+.|++.
T Consensus 198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~ 270 (313)
T 3mwb_A 198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI 270 (313)
T ss_dssp SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHh
Confidence 44567777888 49999999999999999999999998887654 23 5555554 566777777777665
No 55
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=93.59 E-value=0.099 Score=46.43 Aligned_cols=106 Identities=13% Similarity=0.147 Sum_probs=62.7
Q ss_pred EeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCChhHHHhh
Q 013068 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL 398 (450)
Q Consensus 321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL 398 (450)
+.|+||++.||.+.+++.|+||+-++.+.+. +.+...|+++++.++ +...++.+++.+-... .+. +++.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987652 345677999998543 2233333332222222 332 34566
Q ss_pred heeEeecCccc-h----HHHHHHHHhcCcEE--EEecCCEEEE
Q 013068 399 ILIKIAVNTAA-R----RDVLDIAKIFRARA--VDVSDHTITL 434 (450)
Q Consensus 399 ~LIKV~~~~~~-R----~eI~~i~~iFrakI--VDvs~~si~i 434 (450)
+++-|-...-. + ..+++.....+-+| +.-++.++.+
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~ 138 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISV 138 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEEE
Confidence 77766543311 2 24444444434444 4444444443
No 56
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=92.90 E-value=0.21 Score=52.04 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=54.1
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEE---eCChHHHHHHHHHhhcC-ceeeEE
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV---SGTERVLRQVVEQLNKL-VNVIKV 148 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV---~gde~~ieqL~kQL~KL-iDVi~V 148 (450)
+..+-.|.+.+.|+||.|.++.+.|+.+|+|+..|---|+... +-..+-| +.++..+.++.+.|.+. ..-+++
T Consensus 31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vki 108 (429)
T 1phz_A 31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHE 108 (429)
T ss_dssp SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEE
Confidence 4456778888899999999999999999999999998887644 3222222 33455688888888888 544444
No 57
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=92.15 E-value=0.8 Score=46.60 Aligned_cols=130 Identities=16% Similarity=0.244 Sum_probs=79.1
Q ss_pred EEEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCC
Q 013068 79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 79 ~~tISVl-VeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~--iiTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
...|++. +.|+||.+.||.+.|++.|+||+.++...++ ..+ .++++++.++ ....++.+++.+-+..-.|
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v----- 338 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV----- 338 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE-----
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE-----
Confidence 3466777 7999999999999999999999999763332 134 4888888533 2334444444333332222
Q ss_pred chhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 013068 154 EPHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG 217 (450)
Q Consensus 154 ~~~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~-~fG 217 (450)
.+++.++++-|-... .--..+++.....+-.| +..++.++.+=+ +.+..+..++.|. .|.
T Consensus 339 --~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 339 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 406 (421)
T ss_dssp --EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred --EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence 245678888875532 22346666665555555 555655555544 3444555555555 354
No 58
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=92.07 E-value=0.57 Score=47.03 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=53.5
Q ss_pred EEEEEEe--ccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC--hhHHHHHHHHHhcccCEEEE
Q 013068 316 TLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 316 tLSilVe--N~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--~~~ieQI~kQL~KLidVi~V 385 (450)
++.+.+. |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|-++|. +..+.+..+.|++.-.-+++
T Consensus 208 s~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 208 SVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 4444443 799999999999999999999999999865 4555666667664 56788888888887655444
No 59
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=92.05 E-value=0.65 Score=45.30 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=56.1
Q ss_pred EEEEEEEE---eccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 314 SHTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 314 ~htLSilV---eN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
+-.|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+. -++..+.+..++|++.-.-+++
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence 45777888 8999999999999999999999999999865 45555555454 3556788888888877654444
No 60
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=91.62 E-value=0.96 Score=37.50 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=62.3
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee-ecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg-~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi 383 (450)
+-+.++|.|+|+--+-.+|=.++++.|-.|.. -+| |..+.+++=|+++++|+.+.+..+...|.+|..|.
T Consensus 6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 45799999999998888999999999999987 455 66668999999999999999999999999998874
No 61
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=91.51 E-value=0.63 Score=40.85 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=68.9
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEE
Q 013068 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165 (450)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIK 165 (450)
+.++||++.||.+.|++.|+||+.++.++ ..++++++..+ .++++.+.|.+. -.|. +.+.+++|-
T Consensus 28 m~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~vs 92 (157)
T 3mah_A 28 KLLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVIIC 92 (157)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEEE
T ss_pred CCCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEEE
Confidence 35899999999999999999999998643 25788887554 677777778762 1222 345778888
Q ss_pred EeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 013068 166 LNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 166 V~~~~-----~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
|-... ..-..+++... +-.|.-++ .....+.+.=+.+..+..++.|.
T Consensus 93 vvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh 146 (157)
T 3mah_A 93 IVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS 146 (157)
T ss_dssp EEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred EECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence 75432 22234444444 44443333 33333444445555555555554
No 62
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=90.70 E-value=0.33 Score=45.36 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=45.7
Q ss_pred cccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCC
Q 013068 302 GILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGT 365 (450)
Q Consensus 302 ~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd 365 (450)
|+-++.+... -+|. -+.|+||+++||-+.|++.|+||+-++.+.++ +.+...++++++.+
T Consensus 28 GIa~~~~~a~---Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 28 GVAHDRSEAK---VTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp EEEEECSEEE---EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred EEEccCCEEE---EEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 4444444442 3443 58999999999999999999999999988776 35677888888754
No 63
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=90.59 E-value=0.78 Score=47.77 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=56.3
Q ss_pred CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC-CeeEEEEEEe-CChhHHHHHHHHHhcc-cCEEEEE
Q 013068 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVP-GTDESIGKLVQLLHKL-IDLHEVQ 386 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~-~iSRiTIVV~-gd~~~ieQI~kQL~KL-idVi~V~ 386 (450)
+-.+-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... +-..+-|=+. -++..+.++.+.|.+. -.-+++-
T Consensus 31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL 109 (429)
T 1phz_A 31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL 109 (429)
T ss_dssp SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence 3446678888899999999999999999999999999998643 3333333333 2334488899999888 5555554
No 64
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=90.49 E-value=0.98 Score=45.31 Aligned_cols=67 Identities=13% Similarity=0.281 Sum_probs=49.1
Q ss_pred EEEEEEEEc--CchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHhhcCcee
Q 013068 79 RHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNV 145 (450)
Q Consensus 79 ~~tISVlVe--N~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~g--de~~ieqL~kQL~KLiDV 145 (450)
+.++.+++. |+||.|.++.+.|+.||+|...|---|+... + + |=|-+.| ++..+.+..+.|++...-
T Consensus 206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~ 279 (329)
T 3luy_A 206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDW 279 (329)
T ss_dssp EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCE
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCe
Confidence 344444544 7999999999999999999999998887654 2 2 4455555 456788888888776443
No 65
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=89.93 E-value=1.2 Score=45.39 Aligned_cols=115 Identities=13% Similarity=0.221 Sum_probs=68.5
Q ss_pred EEEEE-EeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCCh
Q 013068 316 TLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP 392 (450)
Q Consensus 316 tLSil-VeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~ 392 (450)
.|++. +.|+||.+.+|...|++.|+||+-++...++ ..+...|+++++.++ +...++.+++.+-+..-.|
T Consensus 266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------- 338 (421)
T 3ab4_A 266 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------- 338 (421)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE-------
T ss_pred EEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE-------
Confidence 45565 7899999999999999999999999763332 136678999998543 3344555555433332111
Q ss_pred hHHHhhheeEeecCcc-----chHHHHHHHHhcCcEE--EEecCCEEEEEEc
Q 013068 393 FAERELILIKIAVNTA-----ARRDVLDIAKIFRARA--VDVSDHTITLEVN 437 (450)
Q Consensus 393 ~V~REL~LIKV~~~~~-----~R~eI~~i~~iFrakI--VDvs~~si~iE~T 437 (450)
.+++.+++|-|-...- --..+++.....+-+| +.-++.++.+=+-
T Consensus 339 ~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~ 390 (421)
T 3ab4_A 339 LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR 390 (421)
T ss_dssp EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE
T ss_pred EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe
Confidence 2234566666654321 1134555444434444 4555555555443
No 66
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=88.58 E-value=2.9 Score=35.76 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=62.3
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhcc---CceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRR---GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRR---GyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..|.+.+...+.++..+.|..+|.+. +|.+ ++-++....+..+|+.+. .+.++++.|=+.|.+...|+-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 46999999999999999999999998 8987 558888999999999998 4777899999999998888765
No 67
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=87.40 E-value=0.82 Score=42.70 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=69.8
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChHHHHHHHHHhhcCc---eeeEEEecCCchhhh
Q 013068 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLV---NVIKVEDISNEPHVE 158 (450)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~--iiTIVV~gde~~ieqL~kQL~KLi---DVi~V~dlt~~~~V~ 158 (450)
-+.|+||++.||-+.|++.|+||+-++.+.++.. + .++.++..+ ..++..+.|+++. ...++. +.
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~--d~~~~~~~l~~~~~~~~~~~v~-------~~ 112 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--VGPAAVEKLDSLRNEIGFSQLL-------YD 112 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG--GHHHHHHHHHTTHHHHCCSEEE-------EE
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh--hHHHHHHHHHHHHhhhceeeEE-------Ee
Confidence 4889999999999999999999999988766532 2 266666543 2333333343332 233332 44
Q ss_pred hheeeEEEeCCC-CC----HHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 013068 159 RELMLIKLNGDT-ST----WPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFGI 218 (450)
Q Consensus 159 RELaLIKV~~~~-~~----r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~-~fGI 218 (450)
..++.|-|--.. .. -..+++....-+-.| +.-++-.+.+=+ +.+..+..++.|. .|++
T Consensus 113 ~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L 178 (200)
T 4go7_X 113 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL 178 (200)
T ss_dssp CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence 556666553332 11 224555554444444 444444444433 5555565565555 3664
No 68
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=86.71 E-value=6.6 Score=32.47 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=58.7
Q ss_pred EEEEEEEE--eccchHHHHHHHHHhccCceeeeeeeeecCCCC-e-eEEEEEEeC-ChhHHHHHHHHHhcccCEEEEE
Q 013068 314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG-L-SCITTVVPG-TDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 314 ~htLSilV--eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~-i-SRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~ 386 (450)
.|++.+.+ ++..-|.+.+...+.+-+|.+.+|...+.. ++ + -+-+++..+ +++.+++|+.+|.....|..+.
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~ 84 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH 84 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 48888888 567788889999999999999999987766 55 4 444555544 6778999999999999999886
No 69
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=85.72 E-value=2.5 Score=34.42 Aligned_cols=70 Identities=6% Similarity=0.140 Sum_probs=59.8
Q ss_pred eEEEEEEEEeccch-HHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068 313 RSHTLSMLVNNTPG-VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 313 ~~htLSilVeN~pG-VL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V 385 (450)
..|++.+...+.++ ....|..+| +|++.+.. .-++....+..+|+.+. .+.++++.|-+.|.+...|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 57999999999999 999999999 77886542 46677889999999988 4777899999999998888765
No 70
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=84.99 E-value=4.6 Score=41.77 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=70.2
Q ss_pred EEEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHh--------hcCceee
Q 013068 80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL--------NKLVNVI 146 (450)
Q Consensus 80 ~tISVl---VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL--------~KLiDVi 146 (450)
-.|++. ..|+||++.||...|++.|+||+-++.+.++ ..++++|+.++ +.++.|.+.+ ++-+..-
T Consensus 319 a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d~~~a~~~L~~~l~~~~~~~~~~~~~~~ 396 (473)
T 3c1m_A 319 ALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIR 396 (473)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGGHHHHHHHHHHHHCC----CTTSCCCEE
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechHHHHHHHHHHHHHhhhcccccccccccc
Confidence 455665 5789999999999999999999999975443 24788887533 3344444444 2211111
Q ss_pred EEEecCCchhhhhheeeEEEeCCC-C----CHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 013068 147 KVEDISNEPHVERELMLIKLNGDT-S----TWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 147 ~V~dlt~~~~V~RELaLIKV~~~~-~----~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
.|. +++.+++|-|-... . --..+++.....+-.|.-++ ...+.+-+.=+.+..+..++.|.
T Consensus 397 ~v~-------~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh 464 (473)
T 3c1m_A 397 DVS-------VDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 464 (473)
T ss_dssp EEE-------EEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHH
T ss_pred eEE-------EeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHH
Confidence 121 34567777775542 1 12355555555455553332 22222333323444555555444
No 71
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=84.44 E-value=2.9 Score=34.25 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=47.4
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 013068 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (450)
Q Consensus 163 LIKV~~~~--~~r~eI~~l~~~frAkI-------VDv---s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEia 222 (450)
++|+..+. ...+-|-++++.|+..+ =.+ .-+.|++|+.|++++++++++.|+..|+ +|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 78887654 45567999999986543 332 3378999999999999999999999996 6765
No 72
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=84.30 E-value=5.1 Score=33.15 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=58.3
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHhhcCceee
Q 013068 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~iiTIVV~gde~~ieqL~kQL~KLiDVi 146 (450)
+.+-..+.|.|+|+--+=.+|=.++++-|=.|-.=.-=|..+. +++.++++++.+.+..|...|.+|-.|.
T Consensus 4 ~~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 4 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp CCEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred ceeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 3456899999999998888999999999988875433354444 4699999999999999999999998774
No 73
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=84.18 E-value=2.8 Score=34.83 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=47.4
Q ss_pred eeEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 013068 162 MLIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (450)
Q Consensus 162 aLIKV~~~--~~~r~eI~~l~~~frAkI------VDv----s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEia 222 (450)
.++|+... ....+-|.++++.|+..+ ||- .-++|++|++|+++++++.++.|+..|+ +|..
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 56777654 345668899999998654 333 5578999999999999999999999996 4543
No 74
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=82.66 E-value=1.9 Score=35.58 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=47.3
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 013068 163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR 223 (450)
Q Consensus 163 LIKV~~~~--~~r~eI~~l~~~frA-------kIVDv---s~~sl~iEvTG-~~~KIdafi~~L~~fGI-lEiaR 223 (450)
++|+..+. ...+-|-++++.|+. +|-.+ .-+.|++|+.| ++++++++++.|+..|+ +|...
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 78887653 456668899988754 44443 34789999999 89999999999999996 67763
No 75
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=80.28 E-value=7.5 Score=40.26 Aligned_cols=117 Identities=14% Similarity=0.242 Sum_probs=74.7
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH--HHHHHHHHhhcCceeeEEEecCCchhhhhheeeE
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI 164 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~--~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLI 164 (450)
.++||.+.||.+.|++.|+||+.++.++ .-++++++.++. ..+++.+.|.+....-+|. +.+.+++|
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~----~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V 377 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV----DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV 377 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET----TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC----CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence 5799999999999999999999987542 357788875442 4677777777655433333 45678888
Q ss_pred EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 013068 165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 165 KV~~~-----~~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
-|--. +.--..+++.....+-.|.-++ ...+.|-+.=+.+..+..++.|.
T Consensus 378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH 434 (446)
T 3tvi_A 378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIY 434 (446)
T ss_dssp EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHH
T ss_pred EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHH
Confidence 87432 2334466777766677775544 33333333334444555555543
No 76
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=77.43 E-value=7.8 Score=31.57 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=46.7
Q ss_pred eEEEeCC--CCCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 013068 163 LIKLNGD--TSTWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (450)
Q Consensus 163 LIKV~~~--~~~r~eI~~l~~~frAkI-------VDv---s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEia 222 (450)
++|+..+ ....+-|-++++.|+..+ -.+ .-+.|++|+.|++++++++++.|+..|+ +|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 6777664 345667899999886543 332 3478999999999999999999999996 6665
No 77
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=77.34 E-value=2.3 Score=44.04 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=39.0
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHh
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~ 377 (450)
.|+||++.||...+++.|+||+-++.+.++ ..|+++++.++ .++..+.|+
T Consensus 329 ~~~~G~~a~if~~La~~~InV~~IsQ~tse----~~Is~~V~~~d--~~~a~~~L~ 378 (473)
T 3c1m_A 329 VGVSGTAARIFKALGEEEVNVILISQGSSE----TNISLVVSEED--VDKALKALK 378 (473)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEEECCTT----CCEEEEEEGGG--HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEEecCCC----CEEEEEEechH--HHHHHHHHH
Confidence 688999999999999999999999975554 35889998643 445555444
No 78
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=76.68 E-value=3.7 Score=34.11 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...++++.+++-|++++|++|++.|+.
T Consensus 26 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~ 72 (98)
T 3trg_A 26 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 72 (98)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence 56899999999987 7888888899999999999999999999986
No 79
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=73.43 E-value=13 Score=39.19 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--------hHHHHHHHHHhcccCEEEEEecCCChhH
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--------ESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--------~~ieQI~kQL~KLidVi~V~dlt~~~~V 394 (450)
++||++.||-..|++.|+||+-++-+ ...|+++++.++ +.++++.++|.+.-.| . +
T Consensus 353 ~~~g~~~~if~~la~~~I~vd~I~ss------e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v-~---------~ 416 (510)
T 2cdq_A 353 GQVGFLAKVFSIFEELGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVV-N---------L 416 (510)
T ss_dssp TCTTHHHHHHHHHHHTTCCEEEEEEE------TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEE-E---------E
T ss_pred CcccHHHHHHHHHHHcCCcEEEEEeC------CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeE-E---------E
Confidence 58999999999999999999999644 346899998643 3577788888763222 1 2
Q ss_pred HHhhheeEeecC
Q 013068 395 ERELILIKIAVN 406 (450)
Q Consensus 395 ~REL~LIKV~~~ 406 (450)
++.+++|-|--.
T Consensus 417 ~~~~a~VsiVG~ 428 (510)
T 2cdq_A 417 LKGRAIISLIGN 428 (510)
T ss_dssp EEEEEEEEEEEC
T ss_pred eCCcEEEEEEEE
Confidence 345667666544
No 80
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=72.32 E-value=9.8 Score=40.69 Aligned_cols=127 Identities=10% Similarity=0.146 Sum_probs=79.2
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCC--Cc----EEEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCCchhh
Q 013068 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA----LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (450)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted--~~----iiTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~~~~V 157 (450)
-+.|+||+..||-+.+++.|+|++-+.....++ .+ -+++++..++ ....++.+.+.+-++-.++. +
T Consensus 451 ~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~v~-------~ 523 (600)
T 3l76_A 451 HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIV-------V 523 (600)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCEEE-------E
T ss_pred cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCceEE-------E
Confidence 578999999999999999999999999887653 13 3777776322 23333334443323222222 4
Q ss_pred hhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 013068 158 ERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI 218 (450)
Q Consensus 158 ~RELaLIKV~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~-~fGI 218 (450)
...+++|-|--. +.--..+++....-+-+|.=++...+.|-+.=+.+..+..++.|. .|++
T Consensus 524 ~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l 590 (600)
T 3l76_A 524 NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL 590 (600)
T ss_dssp ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence 456676666422 233346666666666666666555555666666666666666664 3654
No 81
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=70.04 E-value=30 Score=27.70 Aligned_cols=71 Identities=6% Similarity=-0.051 Sum_probs=56.6
Q ss_pred EEEEEEEecc-chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEE
Q 013068 315 HTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (450)
Q Consensus 315 htLSilVeN~-pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~ 386 (450)
-+|++..+++ .++-.|++.+.....=.|-|=.=-+- +.+..=.+|++.|+.+.+..+..+|..+-.|..+.
T Consensus 6 Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhl-d~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 6 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeee-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 4788888888 67888999999888777776333343 34477788999999999999999999998877665
No 82
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=69.98 E-value=30 Score=30.58 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=60.9
Q ss_pred EEEEEEEEecc-chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068 314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (450)
Q Consensus 314 ~htLSilVeN~-pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl 388 (450)
--+|++..+++ .++-.+++.+.....=.|.|-.=-+- +.+..=.+|++.|+.+.|..+..+|..+-.|..+.-.
T Consensus 65 ~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhl-d~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl~ 139 (148)
T 2wvf_A 65 IAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHM-DEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLT 139 (148)
T ss_dssp EEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEEC-SSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEEE
Confidence 46888888888 78888999999988877777433343 3477779999999999999999999999999988753
No 83
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=69.60 E-value=7.4 Score=40.27 Aligned_cols=103 Identities=9% Similarity=0.192 Sum_probs=66.4
Q ss_pred eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--HHHHHHHHHhcccCEEEEEecCCChhHHHhhh
Q 013068 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKLIDLHEVQDITHLPFAERELI 399 (450)
Q Consensus 322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--~ieQI~kQL~KLidVi~V~dlt~~~~V~REL~ 399 (450)
.+.||++.||...|++.|+||+.++.++ ..++++++.++. ..+++.+.|.+.+..-+|. +.+.++
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~------~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA 375 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV------DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMA 375 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET------TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC------CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeE
Confidence 4789999999999999999999997553 378899985542 4677888887755432222 344666
Q ss_pred eeEeecCc-----cchHHHHHHHHhcCcEEEEec----CCEEEEEEc
Q 013068 400 LIKIAVNT-----AARRDVLDIAKIFRARAVDVS----DHTITLEVN 437 (450)
Q Consensus 400 LIKV~~~~-----~~R~eI~~i~~iFrakIVDvs----~~si~iE~T 437 (450)
+|-|--.. .--..+++....-+-+|.-++ +-++.+=+-
T Consensus 376 ~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~ 422 (446)
T 3tvi_A 376 LVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVE 422 (446)
T ss_dssp EEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEE
T ss_pred EEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEc
Confidence 76664332 112356665555556664443 455554433
No 84
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=68.23 E-value=8.6 Score=33.56 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=41.9
Q ss_pred chHHHHHHHHHhccC--ceeeeeeeeecC-CCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKL 379 (450)
Q Consensus 325 pGVL~RItgLFsRRG--yNIeSLtVg~te-~~~iSRiTIVV~gd~~~ieQI~kQL~KL 379 (450)
.|+|+|+..+.-..| |.|..+.+|++. ++...||.+..+ |++.+++|..+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~-d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGR-DERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecC-CHHHHHHHHHHHHHc
Confidence 588999988877655 899999999864 456666554444 778899999999876
No 85
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=68.13 E-value=8.7 Score=31.15 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...++++.+++-|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 45888999998875 5688888889999999999999999999974
No 86
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=67.56 E-value=10 Score=30.61 Aligned_cols=44 Identities=5% Similarity=-0.042 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
.-|.-+.++|+.++ +.|-..+++++.+++.|+++++++|++.|+
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 16 GYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45888999998875 568888888999999999999999999997
No 87
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=65.63 E-value=10 Score=30.62 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=39.9
Q ss_pred EEEEEEEeccchHHH----HHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHH
Q 013068 315 HTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (450)
Q Consensus 315 htLSilVeN~pGVL~----RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL 376 (450)
+...|.|..+||||. .|.+-..+.||+++++..|. ++++.+++++ +.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-------VITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-------EEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEEE-------EEEEEecCCCHHHHHHHHHHHHHHh
Confidence 567888999999996 45566699999999988864 5788787662 3455555554
No 88
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=65.34 E-value=31 Score=36.24 Aligned_cols=114 Identities=15% Similarity=0.276 Sum_probs=69.5
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--------HHHHHHHHHhhcCceeeEEEecCCchhhh
Q 013068 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--------RVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (450)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--------~~ieqL~kQL~KLiDVi~V~dlt~~~~V~ 158 (450)
-++||.+.||-..|++.|+||+-++.+ ..-++++++.++ +.++++.++|.+.-+ |+ ++
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~ss----e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~---v~-------~~ 417 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAV---VN-------LL 417 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSE---EE-------EE
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeC----CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCe---EE-------Ee
Confidence 468999999999999999999999643 234788887543 456777777776322 22 45
Q ss_pred hheeeEEEeCCCCCHH----HHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 159 RELMLIKLNGDTSTWP----EIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 159 RELaLIKV~~~~~~r~----eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
+.+++|-|--.-.... .++......+-.| +.-+...+-|-+.=+.+..+..++.|.
T Consensus 418 ~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH 479 (510)
T 2cdq_A 418 KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 479 (510)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHH
T ss_pred CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 6788888865511221 3333333333444 443234444444445555666666555
No 89
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=64.54 E-value=13 Score=32.85 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=55.9
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChHHHHHHHHHhhcCceeeEEEecCC
Q 013068 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i----iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
.-|++|..|..+=...|..+.++..++....+ + ++|.+.|+-..+-+-...|++|--++.+.+++=
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i 113 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEI 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 34899999999999999999999987654333 2 899999999999999999999988888887753
No 90
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=64.28 E-value=14 Score=29.64 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=33.9
Q ss_pred EEEEEEEeccchHHH----HHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068 315 HTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (450)
Q Consensus 315 htLSilVeN~pGVL~----RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (450)
+...|.|..+||||. .|.+-..+.||+++++..|. ++++..+++
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-------~~~l~~~~~ 51 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVGK-------VLEIVFPAE 51 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEEE-------EEEEEEECS
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEEE-------EEEEEecCC
Confidence 567888889999995 45566899999988887764 577777754
No 91
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=63.00 E-value=12 Score=31.07 Aligned_cols=45 Identities=2% Similarity=-0.044 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-..+++++.+++-|++++|++|++.|+.
T Consensus 25 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 71 (102)
T 1urr_A 25 FFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLEN 71 (102)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 56889999998875 5688888889999999999999999999973
No 92
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=62.68 E-value=45 Score=28.36 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhcc---CceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEE
Q 013068 77 VKRHTISVFVGDESGIINRIAGVFARR---GYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 77 ~~~~tISVlVeN~pGVL~RIagLFsRR---GyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V 148 (450)
...+.+.+...+.++....|..+|.+. +|.+ ++-++....+ +|+.+. .+.+.++.|=+.|.+.-.|+-|
T Consensus 34 Pc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 34 PTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 357999999999999999999999988 8988 3445544444 555544 4567888888899887776644
No 93
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=62.67 E-value=10 Score=30.79 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
.-|.-+.++|+.++ +.|-..+++++.+++.|+++++++|++.|+
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 46888999998865 668888888999999999999999999997
No 94
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=62.13 E-value=11 Score=30.31 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=33.5
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 013068 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (450)
Q Consensus 80 ~tISVlVeN~pGVL~----RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd 128 (450)
+...|.|..|||+|. .|.+-+.+.||+++++.+| ..+++.++++
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-----K~~~l~~~~~ 50 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTT-----DVITFTMDED 50 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEE-----EEEEEEECCS
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEE-----EEEEEEecCC
Confidence 456788888999985 5667779999998888765 2577777765
No 95
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=62.08 E-value=11 Score=31.29 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ |.|-...++++.+++.|++++|++|++.|+.
T Consensus 28 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 28 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 56999999999876 5688888889999999999999999999973
No 96
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=59.58 E-value=13 Score=30.66 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~ 214 (450)
.-|.-+.++|+.++ +.|-...++++.+++-|+++++++|++.|+
T Consensus 22 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 56889999999876 568888888999999999999999999996
No 97
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=58.93 E-value=17 Score=29.12 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=32.7
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 013068 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (450)
Q Consensus 80 ~tISVlVeN~pGVL~----RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd 128 (450)
+...|.|..|||+|. .|.+-+.+.||+++++.+| ..+++...++
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-----K~~~l~~~~~ 51 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVG-----KVLEIVFPAE 51 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEE-----EEEEEEEECS
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEE-----EEEEEEecCC
Confidence 456778888999985 5667789999998877764 2477776643
No 98
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=58.15 E-value=53 Score=26.25 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=54.7
Q ss_pred EEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 80 ~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~-ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
-+|++..+++ .++-.|++.+.....=.|-|-+=-+ .++..+.++++.|+.+.++.+..+|..+-.|..+..
T Consensus 6 Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~L 78 (85)
T 1q5y_A 6 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 78 (85)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEEE
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEeE
Confidence 4788888887 6778899999988766665544444 455456888999999999999999999977776653
No 99
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=57.70 E-value=91 Score=26.74 Aligned_cols=74 Identities=5% Similarity=-0.084 Sum_probs=60.4
Q ss_pred eEEEEEEEEecc-chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068 313 RSHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (450)
Q Consensus 313 ~~htLSilVeN~-pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d 387 (450)
+--+|++..+++ .++-.+++.+.....=.|.|-.=-+- +.+..=.+|++.|+.+.|..+..+|.++-.|..+.-
T Consensus 52 ~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 52 GFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp EEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 346889988888 78888999999988877777443343 347777899999999999999999999998887764
No 100
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=55.74 E-value=12 Score=30.86 Aligned_cols=45 Identities=20% Similarity=0.024 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...++++.+++-|++++|++|++.|+.
T Consensus 21 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 67 (98)
T 1aps_A 21 CFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSK 67 (98)
T ss_dssp CCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSS
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhh
Confidence 56889999998865 5688888889999999999999999999974
No 101
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=55.44 E-value=59 Score=28.70 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=57.8
Q ss_pred eEEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 78 ~~~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~-ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.--+|++..+++ .++-.+++.+.....=.|-|-.=-+ .++..+.++++.|+-+.+..|..+|..+-.|..+..
T Consensus 64 ~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl 138 (148)
T 2wvf_A 64 KIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKL 138 (148)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 345888888888 7788899999988776665544444 444456889999999999999999999999988875
No 102
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=54.68 E-value=24 Score=28.32 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=39.8
Q ss_pred EEEEEEeccchHHH----HHHHHHhccCc-eeeeeeeeecCCCCeeEEEEEEeCC----hhHHHHHHHHH
Q 013068 316 TLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLL 376 (450)
Q Consensus 316 tLSilVeN~pGVL~----RItgLFsRRGy-NIeSLtVg~te~~~iSRiTIVV~gd----~~~ieQI~kQL 376 (450)
...|.|..+||||. .|.+...+.|| +++++..|. ++++.++++ ++.++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK-------~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGK-------YMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEE-------EEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-------EEEEEecCchHHHHHHHHHHHHHh
Confidence 46788888999985 56678899999 699988864 577777765 24466666654
No 103
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=54.51 E-value=18 Score=29.42 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHh
Q 013068 171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNL 213 (450)
Q Consensus 171 ~~r~eI~~l~~~f--rAkIVDvs~~sl~iEvTG~~~KIdafi~~L 213 (450)
.-|.-+.++|+.+ .+.|-..+++++.+++.|++++|++|++.|
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 18 GFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp TCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 5678888999875 578999999999999999999999999999
No 104
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=54.06 E-value=27 Score=30.73 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeE--EEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSC--ITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (450)
Q Consensus 323 N~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSR--iTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt 389 (450)
.-|++|..|..+=...|..++++..++.. .+.+.+ |+|.+.|+-..+-+-...|.+|.-++.+.+++
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~ 112 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFE 112 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeE
Confidence 34899999999999999999999988753 445555 56677899999999999999999999998885
No 105
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=53.81 E-value=27 Score=28.55 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=41.4
Q ss_pred CceEEEEEEEEeccchHHH----HHHHHHhccCc-eeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHH
Q 013068 311 GLRSHTLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (450)
Q Consensus 311 ~~~~htLSilVeN~pGVL~----RItgLFsRRGy-NIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL 376 (450)
+| .+...|.|..+||||. .|.+...+.|| +++++.+|. ++++.+++++ +.++.+.++|
T Consensus 3 ~M-m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 3 KM-LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGK-------YLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp -C-EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CC-cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-------EEEEEecCCCHHHHHHHHHHHHhhc
Confidence 45 3678899999999995 56678899999 699988864 5777777642 3455555554
No 106
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=53.65 E-value=35 Score=28.07 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=55.6
Q ss_pred ceEEEEEEEE--cCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E-E--EEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068 77 VKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L-F--TIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (450)
Q Consensus 77 ~~~~tISVlV--eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i-i--TIVV~-gde~~ieqL~kQL~KLiDVi~V~ 149 (450)
-..|++.|.. ++++-+...+...+.+.+|-+.+|...+.. ++ . | ++... -++..+++++.+|...-.|..|.
T Consensus 6 e~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~ 84 (94)
T 2lqj_A 6 LQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH 84 (94)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred ceEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 3457777665 456778888899999999999999977755 54 3 4 33333 46789999999999999999886
No 107
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=53.18 E-value=13 Score=32.26 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 171 ~~r~eI~~l~~~fr--AkIVDvs~~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.-+.++|+.++ +.|-...++++.+++-|+++.|++|++.|+.
T Consensus 48 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 48 FFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 57999999999885 5688888899999999999999999999974
No 108
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=52.98 E-value=61 Score=27.85 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=57.1
Q ss_pred eEEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 78 ~~~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~-ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
.--+|++..+++ .++-.+++.+.....=.|-|-.=-+ .++..+.++++.|+-+.+..+..+|.++-.|..+..
T Consensus 52 ~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 52 GFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp EEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 345888888888 7788899999988776665554444 454456888999999999999999999888887764
No 109
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=50.43 E-value=41 Score=35.44 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=62.2
Q ss_pred eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-C-hhHHHHHHHHHhcccCEEEEEecCC
Q 013068 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITH 390 (450)
Q Consensus 313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-~~~ieQI~kQL~KLidVi~V~dlt~ 390 (450)
+++.+++.+-++||-|.+++.++. +-||..+.-- ..+.+-..+.+.+.- + .+.+++|.+.|++-= ..+.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g--~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYR-FADAKNACIFVGVRLSRGLEERKEILQMLNDGG--YSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEE-CCCSSBCEEEEEEECSSTHHHHHHHHHHHTSSS--CEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEee-ccCCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC--CCeEECCC
Confidence 468999999999999999999998 6899888765 346666777777763 3 578999999998853 46799999
Q ss_pred ChhH
Q 013068 391 LPFA 394 (450)
Q Consensus 391 ~~~V 394 (450)
.+..
T Consensus 412 ~~~~ 415 (514)
T 1tdj_A 412 DEMA 415 (514)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8766
No 110
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=50.15 E-value=39 Score=27.28 Aligned_cols=68 Identities=10% Similarity=0.282 Sum_probs=48.1
Q ss_pred eEEEEEEEEcCchh-HHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEE
Q 013068 78 KRHTISVFVGDESG-IINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (450)
Q Consensus 78 ~~~tISVlVeN~pG-VL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V 148 (450)
-.+.+.+...+.++ ....|..+| +|++.+.. .-++....+ +|+.+. .+.+.++.|=+.|.+.-.|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 47899999999999 999999999 77886532 112222222 555444 3567888999999887776544
No 111
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=50.05 E-value=32 Score=29.94 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhccC--ceeeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHhhcC
Q 013068 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKL 142 (450)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLsvg~te-d~~iiTIVV~-gde~~ieqL~kQL~KL 142 (450)
.|+|+|+-.+.-..| |.|..+.+|.+. +++.-.|.|. .+++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 589999988877655 899999999766 4456666665 5678899999988776
No 112
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=46.64 E-value=15 Score=31.35 Aligned_cols=45 Identities=9% Similarity=0.285 Sum_probs=27.4
Q ss_pred hcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 013068 182 IFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (450)
Q Consensus 182 ~frAkIVDvs-~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R 231 (450)
.+.+++.+.+ +--++||+..+++|+++|++.|+++= ..|.+.+..
T Consensus 62 ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v-----~~Glvt~e~ 107 (114)
T 1o51_A 62 MHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID-----FDGLVFTAD 107 (114)
T ss_dssp ----------CCCEEEEEEEECHHHHHHHHHHHHTCC-----CCSEEEEEE
T ss_pred EEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEE
Confidence 4567777777 45799999999999999999999752 136655544
No 113
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=46.54 E-value=35 Score=27.31 Aligned_cols=54 Identities=11% Similarity=0.439 Sum_probs=37.7
Q ss_pred EEEEEEcCchhHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCCh----HHHHHHHHHh
Q 013068 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGTE----RVLRQVVEQL 139 (450)
Q Consensus 81 tISVlVeN~pGVL~----RIagLFsRRGy-NIeSLsvg~ted~~iiTIVV~gde----~~ieqL~kQL 139 (450)
...|.|..|||+|. .|.+.+.+.|| +++++..|. .+++.+++++ +.++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK-----~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGK-----YMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEE-----EEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-----EEEEEecCchHHHHHHHHHHHHHh
Confidence 35677778899985 66788899999 699888653 4777776642 4455555544
No 114
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=44.68 E-value=72 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=40.6
Q ss_pred EEEEEEEeccchHHH----HHHHHHhccCce-eeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHH
Q 013068 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (450)
Q Consensus 315 htLSilVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL 376 (450)
+...|.|..+||||. -|.+-..+.||+ ++++.+|. ++.+.++++ ++.++++.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-------~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-------SIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-------EEEEEecCCCHHHHHHHHHHHHHHH
Confidence 456788889999995 577889999996 99988874 577777764 33455555555
No 115
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=44.66 E-value=24 Score=36.31 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=54.5
Q ss_pred EEEEEEEEe-----ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-------hHHHHHHHHHhcccC
Q 013068 314 SHTLSMLVN-----NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-------ESIGKLVQLLHKLID 381 (450)
Q Consensus 314 ~htLSilVe-----N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-------~~ieQI~kQL~KLid 381 (450)
+....+.++ +.||.+.||...|++.|+||+-++-+ + ..|+++++.++ ..++++.++|+++-.
T Consensus 306 ~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~----~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~ 379 (449)
T 2j0w_A 306 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E----VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR 379 (449)
T ss_dssp EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC
T ss_pred CCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C----CeEEEEEeccccchhhHHHHHHHHHHHhccCCe
Confidence 445555554 56899999999999999999999953 2 46999998643 257888888886322
Q ss_pred EEEEEecCCChhHHHhhheeEeecC
Q 013068 382 LHEVQDITHLPFAERELILIKIAVN 406 (450)
Q Consensus 382 Vi~V~dlt~~~~V~REL~LIKV~~~ 406 (450)
| . +++.+++|-|--.
T Consensus 380 v-~---------~~~~~a~vsvVG~ 394 (449)
T 2j0w_A 380 V-E---------VEEGLALVALIGN 394 (449)
T ss_dssp E-E---------EEEEEEEEEEEES
T ss_pred E-E---------EeCCeEEEEEECC
Confidence 2 1 2346677766544
No 116
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=43.81 E-value=1.6e+02 Score=25.39 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=60.2
Q ss_pred ceEEEEEEEEeccc-hHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068 312 LRSHTLSMLVNNTP-GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (450)
Q Consensus 312 ~~~htLSilVeN~p-GVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d 387 (450)
-..-+|++..+++. ++-.+++.+.....=.|.|-.=-+- +.+..=.+|++.|+.+.|..+..+|..+-.|..+.-
T Consensus 53 ~~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 53 EVAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHM-DEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp EEEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred ceEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 34568888888886 8888999999888777776433343 347777899999999999999999999999887764
No 117
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=43.13 E-value=42 Score=27.39 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=34.5
Q ss_pred EEEEEEEEcCchhHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCC
Q 013068 79 RHTISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGT 128 (450)
Q Consensus 79 ~~tISVlVeN~pGVL~----RIagLFsRRGy-NIeSLsvg~ted~~iiTIVV~gd 128 (450)
.+...|.|..|||+|. .|.+.+.+.|| +++++.+|. .+++.++++
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK-----~~~l~~~~~ 54 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGK-----YLVFRVNSS 54 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEE-----EEEEEEECS
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-----EEEEEecCC
Confidence 3667888889999985 56678899999 698887653 477776654
No 118
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=42.27 E-value=1.2e+02 Score=26.07 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=56.9
Q ss_pred ceEEEEEEEEcCch-hHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068 77 VKRHTISVFVGDES-GIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (450)
Q Consensus 77 ~~~~tISVlVeN~p-GVL~RIagLFsRRGyNIeSLsvg~-ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d 150 (450)
...-+|++..+++. ++-.+++.+.....=.|-|-.=-+ .++..+.++++.|+-+.+..+..+|..+-.|..+..
T Consensus 53 ~~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 53 EVAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp EEEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred ceEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 34457888888776 778899999887766655544444 454456889999999999999999999988887764
No 119
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.98 E-value=38 Score=28.00 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhccC
Q 013068 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSKF 216 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~--------sl~iEvTG~~~KIdafi~~L~~f 216 (450)
..|.+|-+..+|+| ++.++ .-+|.++|+++.++...+++..+
T Consensus 27 ~~Ik~I~~~TGa~I-~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 27 ENVKAINQQTGAFV-EISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEK 76 (107)
T ss_dssp CHHHHHHHHSSSEE-EECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 36889999999995 66654 37899999999999988888764
No 120
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=40.73 E-value=28 Score=27.80 Aligned_cols=54 Identities=19% Similarity=0.432 Sum_probs=36.0
Q ss_pred EEEEEEeccchHHH----HHHHHHhccCc-eeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHH
Q 013068 316 TLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (450)
Q Consensus 316 tLSilVeN~pGVL~----RItgLFsRRGy-NIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL 376 (450)
...|.|..+||||. .|.+-..+.|| +++++..| -++++.+++++ +.++.+.++|
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-------k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-------KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-------EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-------EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46788888999996 45566779999 67776654 56778777652 3345555543
No 121
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=39.42 E-value=85 Score=26.03 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC
Q 013068 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT 128 (450)
Q Consensus 80 ~tISVlVeN~pGVL~----RIagLFsRRGyN-IeSLsvg~ted~~iiTIVV~gd 128 (450)
+...|.|..|||+|. .|.+.+.+.||+ ++++.+|. ++.+.++++
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-----~~el~~~~~ 64 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-----SIHLEVEAE 64 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-----EEEEEEECS
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-----EEEEEecCC
Confidence 345777888999985 688899999996 88887653 477777654
No 122
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=37.90 E-value=1.7e+02 Score=24.19 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=26.2
Q ss_pred eeEeecCcc---chHH-HHHHHHhcCcEEEEecCCEEEEE
Q 013068 400 LIKIAVNTA---ARRD-VLDIAKIFRARAVDVSDHTITLE 435 (450)
Q Consensus 400 LIKV~~~~~---~R~e-I~~i~~iFrakIVDvs~~si~iE 435 (450)
||||++... ++.+ ..+|++.-+|.+|.+-..++++=
T Consensus 46 LIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vLy 85 (98)
T 1jo0_A 46 LIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLY 85 (98)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEEE
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEE
Confidence 566665433 3333 56689999999999998888774
No 123
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=36.87 E-value=23 Score=30.84 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=27.8
Q ss_pred hcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 013068 182 IFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (450)
Q Consensus 182 ~frAkIVDvs-~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg 232 (450)
.+.+++.+.+ +--++||+..+++||++|+..|+++= ..|.+.+..-
T Consensus 58 ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~lv-----~~GlVt~e~V 104 (127)
T 2dcl_A 58 VHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMI-----KDGMITVEPT 104 (127)
T ss_dssp ----------CCCEEEEEEEEEHHHHHHHHHHHTTTC-----SSSEEEEEEC
T ss_pred EecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEEE
Confidence 4667788887 45799999999999999999999861 1455555443
No 124
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=36.02 E-value=58 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~-----~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 25 AKINEIRQMSGAQI-KIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCEE-EEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 36888999999995 6665 46789999999999988877654
No 125
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=33.87 E-value=1.2e+02 Score=31.93 Aligned_cols=116 Identities=16% Similarity=0.303 Sum_probs=79.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChHHHHHHHHHhhcCceeeEEEecCC
Q 013068 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISN 153 (450)
Q Consensus 78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~--gde~~ieqL~kQL~KLiDVi~V~dlt~ 153 (450)
.++.+++.+-++||.|.+++.++. +-||..+.--.+ +.+ .+.+.+. +..+.+++|++.|++-= ..+.++++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g--~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA-DAKNACIFVGVRLSRGLEERKEILQMLNDGG--YSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC-CSSBCEEEEEEECSSTHHHHHHHHHHHTSSS--CEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEeecc-CCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC--CCeEECCC
Confidence 468899999999999999999998 689988776532 222 3445444 43678999999998742 35788888
Q ss_pred chhh---hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 013068 154 EPHV---ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI 218 (450)
Q Consensus 154 ~~~V---~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~-fGI 218 (450)
.+.. .|=|+ .-|.. .+ -.+--+.+|.--.|+.+-.|++.|.+ ++|
T Consensus 412 ~~~~~~h~~~~~--------g~~~~----------~~--~~e~~~~~~fpe~~gal~~fl~~~~~~~~i 460 (514)
T 1tdj_A 412 DEMAKLHVRYMV--------GGRPS----------HP--LQERLYSFEFPESPGALLRFLNTLGTYWNI 460 (514)
T ss_dssp CHHHHHTGGGTC--------CCCCS----------SC--CCCEEEEEECCCCTTHHHHHHHHHCSCCCC
T ss_pred CHHHHHHHHHhh--------CCcCc----------cC--CCceEEEEeCCCCCCHHHHHHHhcCCCceE
Confidence 7654 22111 11110 00 12445778999999999999999985 555
No 126
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=32.89 E-value=51 Score=33.86 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=54.4
Q ss_pred EEEEEEEEc-----CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-------HHHHHHHHHhhcCceee
Q 013068 79 RHTISVFVG-----DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-------RVLRQVVEQLNKLVNVI 146 (450)
Q Consensus 79 ~~tISVlVe-----N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde-------~~ieqL~kQL~KLiDVi 146 (450)
+....|.++ +.||.+.||-+.|++.|+||+-++-+ + .-++++++.++ ..++++.++|+++-+
T Consensus 306 ~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~--~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~-- 379 (449)
T 2j0w_A 306 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E--VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR-- 379 (449)
T ss_dssp EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T--TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC--
T ss_pred CCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C--CeEEEEEeccccchhhHHHHHHHHHHHhccCCe--
Confidence 344455554 56899999999999999999999853 2 34778877532 357788888876222
Q ss_pred EEEecCCchhhhhheeeEEEeCCC
Q 013068 147 KVEDISNEPHVERELMLIKLNGDT 170 (450)
Q Consensus 147 ~V~dlt~~~~V~RELaLIKV~~~~ 170 (450)
| .+++.+++|-|--..
T Consensus 380 -v-------~~~~~~a~vsvVG~g 395 (449)
T 2j0w_A 380 -V-------EVEEGLALVALIGND 395 (449)
T ss_dssp -E-------EEEEEEEEEEEEESS
T ss_pred -E-------EEeCCeEEEEEECCC
Confidence 1 144678888886553
No 127
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=32.49 E-value=2e+02 Score=23.81 Aligned_cols=51 Identities=33% Similarity=0.326 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEEeCCCC---CHHH-HHHHHHhcCcEEEEecCCEEEE
Q 013068 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTS---TWPE-IMWLVDIFRAKVVDISEHALTI 197 (450)
Q Consensus 128 de~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV~~~~~---~r~e-I~~l~~~frAkIVDvs~~sl~i 197 (450)
++..++++-.+|+ .||| |||++... ++.+ ..+|++.-+|.+|++-...+++
T Consensus 30 T~~vi~ei~~aL~-----------------~~EL--IKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 30 TEGVLAEIENALN-----------------HHEL--IKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp CHHHHHHHHHHHH-----------------HHSE--EEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHH-----------------HCCe--EEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 3566666666664 3665 55554332 3333 5568899999999998887776
No 128
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=32.35 E-value=71 Score=24.75 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhccC
Q 013068 174 PEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSKF 216 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~-----~sl~iEvTG~~~KIdafi~~L~~f 216 (450)
..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..+
T Consensus 26 ~~Ik~I~~~sga~I-~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 72 (82)
T 1wvn_A 26 ANINEIRQMSGAQI-KIANPVEGSSGRQVTITGSAASISLAQYLINAR 72 (82)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCEE-EEecCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Confidence 36888999999995 5655 366899999999999888877653
No 129
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=31.84 E-value=1.6e+02 Score=24.09 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=44.7
Q ss_pred HHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068 327 VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (450)
Q Consensus 327 VL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V 385 (450)
++++++.-|. -.+||-.=.+....+..+-+|++-+.|+++.+++.++.|++.---++|
T Consensus 37 iIs~l~~~~~-v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 37 LLSETARRFN-VNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp HHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHC-CCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 6766665553 337777777778778899999999999999999999999887443443
No 130
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=31.12 E-value=10 Score=34.05 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=0.0
Q ss_pred EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHh
Q 013068 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (450)
Q Consensus 317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~ 377 (450)
+.+.+.+.||.|.+++.++.+.|.++-++...+.++ +..++++-+.+. .+..+++.|+
T Consensus 141 l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~~-~~~~v~~~v~~~--~~~~i~~~le 198 (213)
T 1vr9_A 141 FSVLLEDKPGELRKVVDALALSNINILSVITTRSGD-GKREVLIKVDAV--DEGTLIKLFE 198 (213)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecCC-CEEEEEEEEccC--CHHHHHHHHH
Confidence 445566889999999999999999998876555444 666677777643 5777777775
No 131
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=30.46 E-value=78 Score=25.25 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~-----sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+..+|+ |++.++ .-++.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 35 EQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp HHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 4788899999998 466654 3688999999999888777764
No 132
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=29.65 E-value=1e+02 Score=23.21 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~--------sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+..+|+| ++.++ .-++.++|+++.+....+++..
T Consensus 23 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 46888999999996 66653 4789999999999988887754
No 133
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=29.18 E-value=1.2e+02 Score=23.51 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~-----sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+..+|+| ++.+. .-++.++|+++.++...+++..
T Consensus 27 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 27 QRIKQIRHESGASI-KIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp HHHHHHHHHHCCEE-EECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCEE-EEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 47889999999995 56543 4689999999999988777654
No 134
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=28.12 E-value=98 Score=23.49 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=38.7
Q ss_pred heeeEEEeCCCCCHH--------HHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhcc
Q 013068 160 ELMLIKLNGDTSTWP--------EIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 160 ELaLIKV~~~~~~r~--------eI~~l~~~frAkIVDvs~~s---l~iEvTG~~~KIdafi~~L~~ 215 (450)
++.-..+..++.... .|.+|.+.++++| ++.++. =.+.++|+++.++...+.+..
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I-~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSV-RIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEE-ECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEE-EECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 344455556554332 5789999999994 676654 267888999999988887754
No 135
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=28.07 E-value=49 Score=28.47 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCcEEEEecCCE-------EEEEEeCChhHHHHHHHHhcc
Q 013068 173 WPEIMWLVDIFRAKVVDISEHA-------LTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 173 r~eI~~l~~~frAkIVDvs~~s-------l~iEvTG~~~KIdafi~~L~~ 215 (450)
-..|.+|-+.++|+| ++.++. -++.++|+++.++...+++..
T Consensus 104 G~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 104 GKTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp GHHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 346888999999998 676654 389999999999988777653
No 136
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=27.52 E-value=79 Score=25.01 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~-----sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+..+|+ |++.+. .-++.++|+++.++...+++..
T Consensus 34 ~~Ik~I~~~tga~-I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 34 QRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp HHHHHHHHHTCCE-EEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCe-EEecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 4678888999998 466653 5789999999999888777654
No 137
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=27.37 E-value=2.3e+02 Score=23.76 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHhcccCEEEEEecCCChhHHHhhheeEeecCc---cchHH-HHHHHHhcCcEEEEecCCEEEEEEc
Q 013068 365 TDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNT---AARRD-VLDIAKIFRARAVDVSDHTITLEVN 437 (450)
Q Consensus 365 d~~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL~LIKV~~~~---~~R~e-I~~i~~iFrakIVDvs~~si~iE~T 437 (450)
++..+++|-.+|++ || ||||++.. .++.+ ..+||+.-+|.+|++-..++++=--
T Consensus 29 Te~vi~ei~~aL~~-----------------hE--LIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR~ 86 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------RE--LIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYRE 86 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SS--EEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHH-----------------CC--cEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEeC
Confidence 45566666666665 45 45555533 33333 5678899999999999898887653
No 138
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=27.31 E-value=75 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhc
Q 013068 174 PEIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLS 214 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~s---l~iEvTG~~~KIdafi~~L~ 214 (450)
..|.+|-+..+|+| ++.++. -++.++|+++.+....+++.
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 25 ESVKKMREESGARI-NISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp HHHHHHHHHHCCEE-EECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEE-EEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 36888999999995 776664 37999999999988777654
No 139
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=26.13 E-value=1.4e+02 Score=23.33 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~--------sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+..+|+| ++.++ .-++.++|+++.+....+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 36888999999996 67653 4789999999999988877654
No 140
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=25.51 E-value=1e+02 Score=25.55 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhccC
Q 013068 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSKF 216 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~-----sl~iEvTG~~~KIdafi~~L~~f 216 (450)
..|.+|-+.++|+| ++.++ .-++.++|+++.++...++++.+
T Consensus 31 ~~Ik~I~~~TGakI-~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~i 77 (106)
T 2hh3_A 31 EMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL 77 (106)
T ss_dssp HHHHHHHHHHTCEE-EECSSCSSSSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcEE-EEecCCCCCceeEEEEEeCHHHHHHHHHHHHHH
Confidence 47889999999985 45433 24789999999999988887653
No 141
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=24.76 E-value=28 Score=26.77 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=44.0
Q ss_pred eeeEEEeCCCCCHHHHHHHHHhcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhccC
Q 013068 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSKF 216 (450)
Q Consensus 161 LaLIKV~~~~~~r~eI~~l~~~frAkIVDvs-~~sl~iEvTG~~~KIdafi~~L~~f 216 (450)
|.-+++.++-..-..|..+++.+++.|+|.. .+.+++.+.=.++++++|.+.|..+
T Consensus 7 ~~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~ 63 (76)
T 3lh2_S 7 LTEYTLQANWFDITGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADF 63 (76)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHH
T ss_pred ceeEEEEEcccCHHHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHH
Confidence 4457788887788899999999999998762 3458999999999999999888754
No 142
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=24.46 E-value=2.4e+02 Score=23.88 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~~-----sl~iEvTG~~~KIdafi~~L~~ 215 (450)
..|.+|-+.++|+| ++.++ .-++.++|+++.++...+++..
T Consensus 111 ~~I~~i~~~tg~~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 156 (164)
T 2jvz_A 111 EMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156 (164)
T ss_dssp HHHHHHHHHTCCEE-EECCCCTTSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHCCeE-EEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHH
Confidence 36889999999996 56543 5789999999999988887754
No 143
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=22.61 E-value=4e+02 Score=23.58 Aligned_cols=102 Identities=12% Similarity=0.212 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hHHHHHHHHHhhcCce--ee---------EEE------e
Q 013068 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVN--VI---------KVE------D 150 (450)
Q Consensus 92 VL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd----e~~ieqL~kQL~KLiD--Vi---------~V~------d 150 (450)
+..-+.-+... ||-+..+.+........++|.++.+ =+..+.+.++|..+.| +. +|- -
T Consensus 14 v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGldRp 92 (164)
T 1ib8_A 14 VREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLERP 92 (164)
T ss_dssp HHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSSSSC
T ss_pred HHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCCCCC
Confidence 33445556667 9999999987665556788888754 4678889999999999 63 222 1
Q ss_pred cCCchhhhhhe-eeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 013068 151 ISNEPHVEREL-MLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (450)
Q Consensus 151 lt~~~~V~REL-aLIKV~~~--~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG 201 (450)
|+...+..|=. -++||... .+.+ +.|.|++.++.++.++|++.+
T Consensus 93 L~~~~df~r~~G~~V~V~l~~~~~g~-------k~~~G~L~~~~~~~v~l~~~~ 139 (164)
T 1ib8_A 93 LKTKDAVAGAVGKYIHVGLYQAIDKQ-------KVFEGTLLAFEEDELTMEYMD 139 (164)
T ss_dssp CSSHHHHHHHCSEEEEEECSSCSSSC-------SEEEEEEEEEETTEEEEEEEC
T ss_pred CCCHHHHHHhCCcEEEEEEecccCCc-------eEEEEEEEEEeCCEEEEEEec
Confidence 22233333322 15666552 1222 468999999999999999976
No 144
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=20.78 E-value=1.8e+02 Score=24.43 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEEeCC-CCCHH-HHHHHHHhcCcEEEEecCCEEEEE
Q 013068 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGD-TSTWP-EIMWLVDIFRAKVVDISEHALTIE 198 (450)
Q Consensus 128 de~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV~~~-~~~r~-eI~~l~~~frAkIVDvs~~sl~iE 198 (450)
++..++++-.+|++ |||.=|||.-+ ..++. -..+|++.-+|.+|++-...+++=
T Consensus 29 Te~vi~ei~~aL~~-----------------hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLY 84 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------RELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIY 84 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEE
Confidence 46667777777743 66554444322 12333 356778999999999988887764
No 145
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=20.61 E-value=3.2e+02 Score=21.69 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (450)
Q Consensus 325 pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi 380 (450)
..++++++.-|. -.+||-.=.+.+..+..+-+|++-+.|+++.+++.+..|++.-
T Consensus 37 ~pvis~l~~~~~-v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~ 91 (100)
T 2qsw_A 37 LPIISHIVQEYQ-VEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLR 91 (100)
T ss_dssp SCHHHHHHHHHT-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHhC-CCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcC
Confidence 346777666653 4577777777777777889999999999889999999998764
No 146
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=20.13 E-value=1.5e+02 Score=24.11 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCcEEEEecC-------CEEEEEEeCChhHHHHHHHHhcc
Q 013068 174 PEIMWLVDIFRAKVVDISE-------HALTIEVTGDPGKMVAVQRNLSK 215 (450)
Q Consensus 174 ~eI~~l~~~frAkIVDvs~-------~sl~iEvTG~~~KIdafi~~L~~ 215 (450)
.-|.+|-+.++|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~I-~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 35 ETIRSICKASGAKI-TCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp HHHHHHHHHHCCEE-EECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEE-EEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 36888999999995 6765 46789999999999887777654
Done!