Query 013070
Match_columns 450
No_of_seqs 230 out of 1551
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 00:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2426 Dihydroxyacetone kinas 100.0 3E-135 7E-140 1032.8 41.0 443 1-449 71-527 (582)
2 PRK14479 dihydroxyacetone kina 100.0 7E-132 1E-136 1059.6 48.8 433 1-446 67-502 (568)
3 PTZ00375 dihydroxyacetone kina 100.0 3E-131 6E-136 1053.3 48.5 433 1-446 70-517 (584)
4 TIGR02361 dak_ATP dihydroxyace 100.0 4E-131 8E-136 1054.8 49.6 442 1-446 66-519 (574)
5 PRK14481 dihydroxyacetone kina 100.0 8E-103 2E-107 783.7 29.8 262 1-267 68-330 (331)
6 TIGR02363 dhaK1 dihydroxyaceto 100.0 1E-102 3E-107 782.0 29.5 260 1-265 69-329 (329)
7 TIGR02362 dhaK1b probable dihy 100.0 2E-102 5E-107 779.0 29.3 260 1-265 65-326 (326)
8 PRK14483 DhaKLM operon coactiv 100.0 3E-102 6E-107 778.5 29.4 260 1-265 67-329 (329)
9 PRK11468 dihydroxyacetone kina 100.0 3E-102 7E-107 782.0 29.8 266 1-268 68-355 (356)
10 PF02733 Dak1: Dak1 domain; I 100.0 2E-103 5E-108 787.4 20.2 267 1-268 52-325 (325)
11 COG2376 DAK1 Dihydroxyacetone 100.0 1.5E-76 3.2E-81 591.9 22.2 256 1-265 67-323 (323)
12 PRK10005 dihydroxyacetone kina 100.0 7.2E-37 1.6E-41 292.5 17.8 141 303-446 4-144 (210)
13 TIGR02365 dha_L_ycgS dihydroxy 100.0 8.4E-35 1.8E-39 275.2 17.0 136 308-446 2-137 (194)
14 PF02734 Dak2: DAK2 domain; I 100.0 6.6E-29 1.4E-33 231.5 14.1 116 331-448 1-116 (175)
15 TIGR03599 YloV DAK2 domain fus 99.9 3.9E-26 8.5E-31 244.4 16.9 136 307-446 1-137 (530)
16 COG1461 Predicted kinase relat 99.7 1.4E-16 2.9E-21 168.7 15.5 140 302-445 5-145 (542)
17 COG2376 DAK1 Dihydroxyacetone 99.4 3.1E-14 6.6E-19 143.7 2.3 136 311-448 27-167 (323)
18 TIGR03599 YloV DAK2 domain fus 85.5 41 0.00088 37.2 16.9 179 4-230 337-519 (530)
19 PRK11377 dihydroxyacetone kina 82.8 15 0.00032 40.0 12.0 176 15-221 48-240 (473)
20 TIGR02364 dha_pts dihydroxyace 76.8 13 0.00028 33.1 7.8 78 15-113 44-124 (125)
21 PRK09314 bifunctional 3,4-dihy 73.8 3.9 8.5E-05 42.5 4.2 58 4-62 252-314 (339)
22 PF00925 GTP_cyclohydro2: GTP 62.4 6 0.00013 36.9 2.5 61 4-65 51-146 (169)
23 PRK12485 bifunctional 3,4-dihy 60.8 9.5 0.00021 40.1 3.9 59 4-62 256-344 (369)
24 PRK14484 phosphotransferase ma 59.6 17 0.00037 32.5 4.8 77 15-113 44-120 (124)
25 TIGR00505 ribA GTP cyclohydrol 55.7 16 0.00035 34.7 4.3 34 4-37 50-87 (191)
26 PRK00393 ribA GTP cyclohydrola 53.7 19 0.00042 34.4 4.4 34 4-37 53-90 (197)
27 PTZ00450 macrophage migration 50.6 28 0.0006 30.5 4.5 40 191-230 60-99 (113)
28 cd00641 GTP_cyclohydro2 GTP cy 48.9 26 0.00056 33.3 4.5 33 5-37 53-89 (193)
29 PF02645 DegV: Uncharacterised 48.2 56 0.0012 32.5 7.0 185 12-235 61-266 (280)
30 cd00615 Orn_deC_like Ornithine 47.8 42 0.00091 33.3 6.0 54 12-69 138-191 (294)
31 TIGR00762 DegV EDD domain prot 47.6 64 0.0014 32.1 7.3 94 12-121 60-156 (275)
32 PLN02831 Bifunctional GTP cycl 44.7 21 0.00046 38.5 3.5 39 3-41 290-332 (450)
33 PTZ00397 macrophage migration 44.6 44 0.00096 28.7 4.9 41 190-230 59-99 (116)
34 COG1416 Uncharacterized conser 42.0 54 0.0012 28.9 4.9 71 164-241 13-83 (112)
35 PRK14019 bifunctional 3,4-dihy 41.2 31 0.00067 36.3 4.0 59 4-62 256-341 (367)
36 PRK08815 GTP cyclohydrolase; P 39.9 25 0.00055 37.1 3.1 39 4-43 224-266 (375)
37 PRK09311 bifunctional 3,4-dihy 39.3 38 0.00082 36.1 4.3 34 4-37 257-294 (402)
38 COG4175 ProV ABC-type proline/ 39.3 40 0.00087 35.3 4.3 119 89-249 10-137 (386)
39 PF13684 Dak1_2: Dihydroxyacet 38.0 4.6E+02 0.01 26.8 17.0 176 4-225 119-297 (313)
40 PF00975 Thioesterase: Thioest 37.9 54 0.0012 30.5 4.8 75 145-235 31-106 (229)
41 COG1732 OpuBC Periplasmic glyc 36.9 79 0.0017 32.5 6.0 85 121-237 15-99 (300)
42 PLN03065 isocitrate dehydrogen 36.5 2.6E+02 0.0056 30.7 10.0 135 22-175 324-474 (483)
43 PTZ00375 dihydroxyacetone kina 35.8 3.2E+02 0.0069 30.8 10.9 109 335-445 430-539 (584)
44 PRK05340 UDP-2,3-diacylglucosa 33.4 50 0.0011 32.0 3.8 36 5-40 37-81 (241)
45 PF02955 GSH-S_ATP: Prokaryoti 33.1 86 0.0019 29.5 5.2 57 180-237 76-159 (173)
46 PF03793 PASTA: PASTA domain; 32.3 76 0.0016 23.8 4.0 30 34-65 1-30 (63)
47 PF08353 DUF1727: Domain of un 30.8 58 0.0013 28.5 3.5 33 9-41 80-112 (113)
48 COG3412 Uncharacterized protei 30.3 83 0.0018 28.4 4.3 80 14-112 44-123 (129)
49 KOG1526 NADP-dependent isocitr 29.4 38 0.00081 35.0 2.2 47 24-71 267-313 (422)
50 PRK09318 bifunctional 3,4-dihy 29.2 44 0.00095 35.5 2.8 40 3-43 239-281 (387)
51 COG1307 DegV Uncharacterized p 29.1 5.1E+02 0.011 26.2 10.3 193 14-246 64-279 (282)
52 PF02633 Creatininase: Creatin 29.0 2.6E+02 0.0056 27.1 8.0 61 151-225 72-133 (237)
53 COG0616 SppA Periplasmic serin 28.4 2E+02 0.0044 29.5 7.4 60 165-236 83-142 (317)
54 PF01187 MIF: Macrophage migra 28.2 49 0.0011 28.5 2.5 40 191-230 58-97 (114)
55 PF02873 MurB_C: UDP-N-acetyle 27.7 78 0.0017 27.4 3.7 34 192-226 66-99 (105)
56 cd03465 URO-D_like The URO-D _ 26.3 1.3E+02 0.0028 30.1 5.6 107 11-132 205-315 (330)
57 COG0336 TrmD tRNA-(guanine-N1) 25.4 48 0.001 32.9 2.1 58 16-73 64-133 (240)
58 TIGR01854 lipid_A_lpxH UDP-2,3 24.2 96 0.0021 29.8 4.0 36 5-40 35-79 (231)
59 TIGR02326 transamin_PhnW 2-ami 23.6 2.4E+02 0.0052 28.5 7.0 53 10-67 58-111 (363)
60 TIGR00619 sbcd exonuclease Sbc 23.5 2.5E+02 0.0054 27.6 6.9 54 5-60 44-105 (253)
61 PF03408 Foamy_virus_ENV: Foam 23.4 2.2E+02 0.0048 33.1 7.0 68 311-386 880-947 (981)
62 PRK09319 bifunctional 3,4-dihy 23.1 80 0.0017 35.1 3.5 38 3-41 261-302 (555)
63 PRK05647 purN phosphoribosylgl 22.5 1.5E+02 0.0033 28.3 4.9 45 14-63 13-57 (200)
64 TIGR01753 flav_short flavodoxi 22.1 4.7E+02 0.01 22.2 7.7 102 107-225 13-114 (140)
65 TIGR03588 PseC UDP-4-keto-6-de 21.8 1.5E+02 0.0032 30.5 5.1 55 14-72 105-159 (380)
66 PF09548 Spore_III_AB: Stage I 21.8 3.4E+02 0.0073 25.1 7.0 62 356-430 46-107 (170)
67 TIGR00639 PurN phosphoribosylg 21.8 1.5E+02 0.0033 28.1 4.8 48 10-62 5-55 (190)
68 PRK11340 phosphodiesterase Yae 21.8 1.7E+02 0.0037 28.9 5.4 55 5-59 85-144 (271)
69 PF07788 DUF1626: Protein of u 21.0 89 0.0019 25.3 2.5 28 27-59 42-70 (70)
70 PRK00115 hemE uroporphyrinogen 20.8 1.2E+02 0.0025 31.3 4.0 106 11-132 221-328 (346)
71 cd05013 SIS_RpiR RpiR-like pro 20.7 2.7E+02 0.0059 23.3 5.8 57 10-70 42-98 (139)
72 cd07385 MPP_YkuE_C Bacillus su 20.6 2.1E+02 0.0046 26.6 5.6 54 5-58 37-92 (223)
73 COG1105 FruK Fructose-1-phosph 20.5 3.8E+02 0.0083 27.7 7.6 125 113-261 67-198 (310)
74 TIGR02365 dha_L_ycgS dihydroxy 20.5 7.3E+02 0.016 23.4 11.9 102 334-444 51-152 (194)
75 PRK10005 dihydroxyacetone kina 20.3 7.8E+02 0.017 23.7 12.2 107 334-445 58-164 (210)
76 PRK08307 stage III sporulation 20.2 2.6E+02 0.0056 26.1 5.9 61 357-430 48-108 (171)
No 1
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-135 Score=1032.82 Aligned_cols=443 Identities=49% Similarity=0.761 Sum_probs=411.3
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~-~~g 79 (450)
||||++||+||||||.+|||+|||+|.+.+|+|+|||||||||||||||+||||++|++||+|+|+||||++++++ ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCcCCCceEEeccccCCCCccc-c
Q 013070 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (450)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~-~ 158 (450)
|||||||||||||+||+|++|++|+||+++++.+++|+.||||+|+||++||++++++|+++|||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred cCCCHHHHHHHHHHHHHhc--ccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeecccccc
Q 013070 159 DLQPVDVVVSHVLKQILST--ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (450)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~--~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl 236 (450)
+++|+++||.+||++|+++ +|+|++|.++++||+|||||||+|.|||.+++.++.++|+.+|||.|+|+|.|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 6777999999999999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeec---------cHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHHH
Q 013070 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVL 307 (450)
Q Consensus 237 dm~GfSiTll~l---------d~~l~~~ldap~~ap~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (450)
||+||||||||. |+.+++|+|+|+++|+||.......|.. .+. .. .....+ .+.++....+.+.+
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~~~---~~~-~~-s~~~~~-~~~~s~vt~d~~~~ 384 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVPTP---PIS-SS-SLEHLE-SEKKSGVTVDAQKF 384 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCCCC---CCC-Cc-chhhcc-cccCCCccccHHHH
Confidence 999999999999 7889999999999999997653222111 110 11 111111 22333566789999
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013070 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKY-YPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (450)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~-~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ 386 (450)
..+|.++++.|++.||.||+||+.+||||||+||.+|+++|++++++. ++.+++.+++++|+..++++||||||+||++
T Consensus 385 ~~~l~~~~~~ii~~Ep~lt~~D~~aGDGDCGtTl~~gaeaI~e~~k~~~~~~~~~~~~v~~is~~ie~sMGGTSG~LY~i 464 (582)
T KOG2426|consen 385 AAALKAVAEAIIESEPHLTELDTIAGDGDCGTTLVRGAEAILEALKNDKLPLDDPAQLVKDISDIIEDSMGGTSGALYSI 464 (582)
T ss_pred HHHHHHHHHHHHhcccchhHHhccccCCcchhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999753 6788999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhhcCC
Q 013070 387 FCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEVKCW 449 (450)
Q Consensus 387 ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~ 449 (450)
||.++++.+++..+++++.+.|++++..+++++++||+||||||||+|+|+||++.|...+|+
T Consensus 465 ~lsa~aqgl~~~~~~~it~~~~a~al~~aldal~KYt~Ar~G~rTMiDaL~pfve~~s~g~d~ 527 (582)
T KOG2426|consen 465 FLSAAAQGLKQSGQEEITRKTWAEALKVALDALQKYTGARPGDRTMIDALQPFVETFSAGKDL 527 (582)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCccH
Confidence 999999999987778999999999999999999999999999999999999999999988775
No 2
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=6.5e-132 Score=1059.59 Aligned_cols=433 Identities=42% Similarity=0.621 Sum_probs=392.5
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (450)
||||||||+||||||++||++|||+|++++|||||||||||||||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999655567899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCccccc
Q 013070 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (450)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (450)
||+|||||||||+||+|++|+||+||++++++++++++||||+|++||+|| ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCC
Q 013070 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (450)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~ 239 (450)
+.++++++++|+++|+++ ++++++++|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999996 68899999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHHHHHHHHHHHHHHH
Q 013070 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTIEAAAEAVV 319 (450)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~ap~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~li 319 (450)
|||||||++|++|++|||+||++|+||..... .+... ......+.. ............+...+++||+.+++.|+
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~~~~~-~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~a~~l~ 376 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRRGGAV-EPVEY--VEAAEEDDA--EEPPRASKASRATAANLVAALDAVAEALI 376 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCCCCcc-cccCc--ccccccccc--cccccCCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999663110 01000 000000000 00000111122346889999999999999
Q ss_pred HhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 013070 320 NLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL--NDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKA 397 (450)
Q Consensus 320 ~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~--~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~~a~~l~~ 397 (450)
+++++||+||+.+||||||+||++||+++.+.+++ ... .++.++|+.+++++++.||||||+|||+||+++++.+++
T Consensus 377 ~~~d~Ln~LD~~VGDGD~G~nM~~G~~ai~~~l~~-~~~~~~~~~~~l~~i~~all~~~GGtSG~Lys~~f~~~a~~l~~ 455 (568)
T PRK14479 377 DNEDELGELDAVAGDGDHGIGMARGSKAALAAARA-AVEAGAGAGSVLAAAGDAWADHAGGTSGPLWGTALRAAGKALGD 455 (568)
T ss_pred HhHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHhh-ccccCCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999973 332 689999999999999999999999999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhh
Q 013070 398 SSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEV 446 (450)
Q Consensus 398 ~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~ 446 (450)
+ ++++.++|+++|.+++++|++||+|+||||||||+|+|+++++++.
T Consensus 456 ~--~~l~~~~la~al~~g~~~v~~~G~AkpGDkTMLDaL~Pa~eal~~~ 502 (568)
T PRK14479 456 K--DEPTAADFAAAVRAAVDAIQELGGAQVGDKTMVDALVPFADALEAA 502 (568)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHH
Confidence 6 6799999999999999999999999999999999999999999753
No 3
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=2.6e-131 Score=1053.31 Aligned_cols=433 Identities=38% Similarity=0.599 Sum_probs=384.9
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (450)
||||||||+||||||++||++|||+|++++|||||||||||||||||||+|+|+++||+|++|+|+||||+++ .+++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~~-~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFGT-KDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCCC-CCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999973 457899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCcCCCceEEeccccCCCCcccccC
Q 013070 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (450)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (450)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999954489999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc--c---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccc
Q 013070 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (450)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~--~---~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TS 235 (450)
+++++++++|+++|+++- + +|++++++++|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999851 1 2458889999999999999999999999999999999887 999999999999999
Q ss_pred cCCCcceEEEeeccH-HHHH--------hhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHH
Q 013070 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHV 306 (450)
Q Consensus 236 ldm~GfSiTll~ld~-~l~~--------~ldap~~ap~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
|||+|||||||++|| +|++ |||+||++|+||.... +... .+.. .. .. ....++..+...+.
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~~~~---~~~~--~~~~---~~-~~-~~~~~~~~~~~~~~ 377 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWATAKG---PLSA--LQLA---KP-EA-EAASRKAATPTNSL 377 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCCCCC---Cccc--cccc---cc-cc-cccCccccchhHHH
Confidence 999999999999965 5999 8888899999976321 1000 0000 00 00 00011111012477
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHhcCCChHHHHH
Q 013070 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL-NDAAETVNEIGASIRRVMGGTSGILYH 385 (450)
Q Consensus 307 l~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~-~~~~~~l~~i~~a~~~~~GGtSG~Lyg 385 (450)
++++|+++|+.|+++|++||+||+++||||||+||.+||+++.+.++. .+. .++..+|+.+++++++.|||||||||+
T Consensus 378 l~~~l~~~~~~l~~~e~~Lt~LD~~iGDGDhG~tm~rG~~ai~~~l~~-~~~~~~~~~~l~~ig~a~~~~vGGSSG~Lyg 456 (584)
T PTZ00375 378 LRSVLERVFETLIESENYLNELDAEVGDGDLGSGLERSSKAVLESLPY-LPLEANVRKTLTLISKAVADAFGGSSGPLYG 456 (584)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccCCcHHHHHHHHHHHHHHHhhh-ccccCCHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999999999999999999999999999983 443 589999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhh
Q 013070 386 IFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEV 446 (450)
Q Consensus 386 ~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~ 446 (450)
+||+++++.+++......+.++|+++|++++++|++||+||+|||||||+|+||+++|+++
T Consensus 457 ~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~eaI~~rG~Ak~GDKTMlDaL~Pa~~al~~~ 517 (584)
T PTZ00375 457 AFLLGGANALAEALNGGNAVDAVRAALAAGSHSIQELGGARVGDRTMVDVLIPFAEALNSC 517 (584)
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeeeeeeHHHHHHHHHHh
Confidence 9999999999752101235789999999999999999999999999999999999999763
No 4
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=3.8e-131 Score=1054.81 Aligned_cols=442 Identities=48% Similarity=0.744 Sum_probs=393.3
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccC-CCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCC
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIA 78 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~-~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~-~~~ 78 (450)
||||||||+||||||++||++|||++++ ++|||||||||||||||||||+|+|+++||+|++|+|+||||+++++ ..+
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 99999999999999999999999999999999999999999998743 478
Q ss_pred CccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCC-CcCCCceEEeccccCCCCccc
Q 013070 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (450)
Q Consensus 79 gRRGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg~~~~~-~l~~~e~E~G~GiHgEpG~~~ 157 (450)
||||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976665 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHhcc--cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeecccc
Q 013070 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (450)
Q Consensus 158 ~~~~~-a~~lv~~ml~~ll~~~--~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~T 234 (450)
.+++| +++++++|+++|++++ |+|++++++++|+||||||||||+||||++++++.++|+++++|+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 67889999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEeeccH---HHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccchHHHHHHH
Q 013070 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTI 311 (450)
Q Consensus 235 Sldm~GfSiTll~ld~---~l~~~ldap~~ap~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 311 (450)
||||+||||||+++|+ +|++|||+||++|+||.......+....... ..... .+..........+...+++||
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~l 381 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPVAAYSSKPWREKREV---VSSSA-PELIEETAVRSYDPQLVAAIL 381 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCCCCcccccccccccc---ccccc-cccccCCCcccCCHHHHHHHH
Confidence 9999999999999999 9999999999999997532111010000000 00000 000110111123568899999
Q ss_pred HHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 013070 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKA 390 (450)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~ 390 (450)
+++|+.|++++++||+||+.+||||||+||.+|++++.+.++. .++..++.++|..+++++++.||||||+|||+||++
T Consensus 382 ~~~~~~l~~~~d~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~~l~~ig~a~~~~~GGtSG~Lyg~~f~~ 461 (574)
T TIGR02361 382 ESGCAALLELEPHLTKLDTKAGDGDCGSTLARGAEAILELLKSKKLPLNDPATLLAQISDVVEGVMGGTSGALYSIFFSA 461 (574)
T ss_pred HHHHHHHHHhHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999872 134468999999999999999999999999999999
Q ss_pred HHHHhhcc--CCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhh
Q 013070 391 AYAKLKAS--SKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEV 446 (450)
Q Consensus 391 ~a~~l~~~--~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~ 446 (450)
+++.+++. ..++++.++|+++|++|++++++||+|+||||||||+|+||++++++.
T Consensus 462 ~a~~l~~~~~~~~~~~~~~~a~al~aa~eai~~~G~A~pGDkTMLDaL~Pa~~al~~~ 519 (574)
T TIGR02361 462 AAQSLKQNASKKEEITPEAWAAALKTALDALYKYTGARPGDRTMIDALQPFVEALEAG 519 (574)
T ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHH
Confidence 99999862 125789999999999999999999999999999999999999999753
No 5
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=8.4e-103 Score=783.65 Aligned_cols=262 Identities=47% Similarity=0.753 Sum_probs=256.9
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (450)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877678899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCccccc
Q 013070 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (450)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (450)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCC
Q 013070 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (450)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~ 239 (450)
++++++++++|+++|+++ ++++++|+++||||||||||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68999999999999999999999999999999999877 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCC
Q 013070 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (450)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~ap~w~~ 267 (450)
||||||+++|++|++|||+||++|+|||
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~ 330 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRW 330 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCC
Confidence 9999999999999999999999999986
No 6
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=1.2e-102 Score=781.98 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.3
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (450)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877668899
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCccccc
Q 013070 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (450)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (450)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCC
Q 013070 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (450)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~ 239 (450)
+.|+++++++|+++|+++ ++++++|+++|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999996 68899999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 013070 240 GFSISIMKADEVILKHLDATTKAPHW 265 (450)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~ap~w 265 (450)
||||||+++|+++++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 7
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=2.4e-102 Score=779.00 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=252.8
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (450)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++....||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999654445699
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCccccc
Q 013070 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (450)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (450)
||+|||||||||+||||++|+||+||+++++++++|++||||||++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCC
Q 013070 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (450)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~ 239 (450)
++++++++++|+++|+++ ++++++|+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999986 58899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeec-cHHHHHhhcCcCCCCCC
Q 013070 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (450)
Q Consensus 240 GfSiTll~l-d~~l~~~ldap~~ap~w 265 (450)
|||||||++ |++|++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 8
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=2.8e-102 Score=778.49 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=253.8
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~-~~~~~g 79 (450)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||+++ +.+..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 655669
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCcccc
Q 013070 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (450)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (450)
|||+|||||||||+||||++|+||+||+++++++++|++||||||++||+|| ++|+|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCC
Q 013070 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (450)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm 238 (450)
+++|+++++++|+++|+++ ++++++++|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999986 58899999999999999999999999999999999887 999999999999999999
Q ss_pred CcceEEEeec-cHHHHHhhcCcCCCCCC
Q 013070 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (450)
Q Consensus 239 ~GfSiTll~l-d~~l~~~ldap~~ap~w 265 (450)
+||||||+++ |++|++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 56999999999999999
No 9
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=3.4e-102 Score=782.04 Aligned_cols=266 Identities=39% Similarity=0.632 Sum_probs=257.9
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (450)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++.+||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999887778999
Q ss_pred cccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCccccc
Q 013070 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (450)
Q Consensus 81 RGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (450)
||+|||||||||+||||++|+||+||+++++++++|++||||||++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc---------------------cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhh
Q 013070 160 LQPVDVVVSHVLKQILSTE---------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQL 218 (450)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~---------------------~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~ 218 (450)
+.|+++++++|+++|+++. |. ++++++++|+|||||||+||++|||++++++.++|++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~ 306 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTK-QPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQ 306 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhcccccccccccccccc-CCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 22 4888999999999999999999999999999999988
Q ss_pred hcCCeEEEEeeeccccccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 013070 219 EHGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (450)
Q Consensus 219 ~~gi~v~r~~~G~~~TSldm~GfSiTll~ld~~l~~~ldap~~ap~w~~~ 268 (450)
+ ||+|+|+|+|+|||||||+|||||||++||++++|||+||++|+|+|+
T Consensus 307 ~-gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 307 A-GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred C-CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 8 999999999999999999999999999999999999999999999753
No 10
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=2.5e-103 Score=787.40 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.2
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~-~g 79 (450)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875 99
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCcCCCceEEeccccCCCCcccc
Q 013070 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (450)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (450)
|||+||+||||||+||+||+|+||+||++++++++++++||||+|+|||+|+ ++++|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhcc---cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEEeeeccc
Q 013070 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (450)
Q Consensus 159 ~~~~-a~~lv~~ml~~ll~~~---~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L-~~~~gi~v~r~~~G~~~ 233 (450)
++.| +++++++|+++|+++. |+|++++++++++||||||||||.||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 67899999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 013070 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (450)
Q Consensus 234 TSldm~GfSiTll~ld~~l~~~ldap~~ap~w~~~ 268 (450)
|||||+|||||||++|+++++|||+||++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999873
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-76 Score=591.87 Aligned_cols=256 Identities=45% Similarity=0.719 Sum_probs=248.4
Q ss_pred CcceeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCCC
Q 013070 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIAG 79 (450)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~-~~~g 79 (450)
||+|+++|++|+||+++||+++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|.|||++.++. ..++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998875 3799
Q ss_pred ccccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCcCCCceEEeccccCCCCccccc
Q 013070 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (450)
Q Consensus 80 RRGlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (450)
|||++|++|||||+||+|++|+||+++.+++++++++++|+||+|++|++|.... |++++||+|+|+|||||||++|++
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr-f~~~~gE~elG~gihGe~g~~~~~ 225 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR-ASLGLGERSLGHGIHGEPGVRREI 225 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc-cccCCCCEeeccccCCCCcchHHh
Confidence 9999999999999999999999999999999999999999999999999999444 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCC
Q 013070 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (450)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~ 239 (450)
++++++++++|+++|+++ ++++ ++|+|||||||+||++|||+++++|.++|+++ ||+|+|+++|+|||||||+
T Consensus 226 l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m~ 298 (323)
T COG2376 226 LKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDMA 298 (323)
T ss_pred HHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceecccccC
Confidence 999999999999999986 5677 99999999999999999999999999999999 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 013070 240 GFSISIMKADEVILKHLDATTKAPHW 265 (450)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~ap~w 265 (450)
||||||+++|++|++|||+||++ .|
T Consensus 299 G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 299 GFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 99999999999999999999999 55
No 12
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=100.00 E-value=7.2e-37 Score=292.53 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=133.6
Q ss_pred chHHHHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHH
Q 013070 303 QGHVLEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGI 382 (450)
Q Consensus 303 ~~~~l~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~ 382 (450)
+...+++||+++++.|++++++||+||+++||||||+||.+||+++++.+++ .+..++..+|+.+++++++.|||||||
T Consensus 4 ~~~~~~~~l~~~~~~l~~~~~~Lt~lD~~iGDGD~G~~m~~G~~av~~~l~~-~~~~d~~~~l~~~g~~~~~~~GGtsG~ 82 (210)
T PRK10005 4 SRTQIVNWLTRCGDIFTEESDYLTGLDREIGDADHGLNMNRGFSKVVEKLPA-IADKDIGFILKNTGMTLLSSVGGASGP 82 (210)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhccccCccHHHHHHHHHHHHHHHhhc-cccCCHHHHHHHHHHHHHHHcCCccHH
Confidence 4567899999999999999999999999999999999999999999999984 566789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhh
Q 013070 383 LYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEV 446 (450)
Q Consensus 383 Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~ 446 (450)
||++||+++++.++++ ++++.++|+++|..++++|++||+|+||||||||+|+|++++|++.
T Consensus 83 Lyg~~f~~~~~~l~~~--~~~~~~~~~~al~~~~~~i~~~G~A~~GdkTmlDaL~Pa~~al~~~ 144 (210)
T PRK10005 83 LYGTFFIRAAQATQAR--QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQS 144 (210)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCchhHhhHHHHHHHHHHH
Confidence 9999999999999876 6799999999999999999999999999999999999999999763
No 13
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=100.00 E-value=8.4e-35 Score=275.24 Aligned_cols=136 Identities=26% Similarity=0.422 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 013070 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIF 387 (450)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~f 387 (450)
++||.++++.|++++++||+||+++||||||+||.+|++++.+.+++ .+..++.++|+.++++++..+|||||||||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~L~~LD~~vGDGD~G~nm~~g~~ai~~~l~~-~~~~~~~~~l~~~~~~~~~~~gGtSG~l~~~~ 80 (194)
T TIGR02365 2 LNWLKNCGDLIIENKEYLTELDRAIGDGDHGINMARGFSEVKEKLDA-FKDKTIGEILKNTGMTLISKVGGASGPLYGTA 80 (194)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 57999999999999999999999999999999999999999999983 55578999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhh
Q 013070 388 CKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEV 446 (450)
Q Consensus 388 f~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~ 446 (450)
|+++++.++++ ++++.++|+++|+++++.+++||+++||||||||+|+|+++++++.
T Consensus 81 f~~~~~~l~~~--~~~~~~~~~~al~~a~~~i~~~g~a~~GdkTmlD~l~pa~~al~~~ 137 (194)
T TIGR02365 81 FLKASKALKDD--EILDAEDLAEILQAGLEGIQSRGKATPGEKTMVDVWAPVVEALRKA 137 (194)
T ss_pred HHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHc
Confidence 99999999875 6899999999999999999999999999999999999999999764
No 14
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=99.96 E-value=6.6e-29 Score=231.48 Aligned_cols=116 Identities=42% Similarity=0.604 Sum_probs=104.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 013070 331 KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAE 410 (450)
Q Consensus 331 ~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~ 410 (450)
++||||||+||++++++|++.+++..+..++.++|+.+++++++.+||+||+||++||+++++.++++ ++++.++|.+
T Consensus 1 ~vGDGD~G~nm~~~~~ai~~~l~~~~~~~~~~~~l~~~~~~~~~~~gGssG~L~~~~f~~~a~~l~~~--~~~~~~~~~~ 78 (175)
T PF02734_consen 1 PVGDGDHGTNMARGARAIKEALDDLPPEDDPGKLLKAIAMALLSGAGGSSGPLYSQFFMGAAKALKGK--EELDAEDLAE 78 (175)
T ss_dssp CTSSS-HHHHHHHHHHHHHHHHHCCSCTSSHHHHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHHCHTT--SECCHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhccC--CCCCHHHHHH
Confidence 68999999999999999999998532678899999999999999999999999999999999999886 6799999999
Q ss_pred HHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhhcC
Q 013070 411 ALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEVKC 448 (450)
Q Consensus 411 al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~~~ 448 (450)
+|+++++++++||+++||||||||+|+|++++|++..+
T Consensus 79 a~~~~~~~i~~~g~a~~GdkTmlD~L~pa~~al~~~~~ 116 (175)
T PF02734_consen 79 AFEAALEAIQARGGAKPGDKTMLDALIPAAEALEEAKD 116 (175)
T ss_dssp HHHHHHHHHHHHH---TTSSSTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997543
No 15
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=99.94 E-value=3.9e-26 Score=244.41 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHHHHH
Q 013070 307 LEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (450)
Q Consensus 307 l~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg 385 (450)
|++|+..+++.|++++++||+||+ ++||||||+||.++++++.+.+++ .+..++.++++.+++.++..+|||||+|||
T Consensus 1 ~~~~l~~~a~~l~~~~~~Ln~LdvfpVgDGDtGtNM~~t~~a~~~~l~~-~~~~~~~~~~~~~a~~~l~garGnSGvIls 79 (530)
T TIGR03599 1 LADMIRSGANNLENNAEEINALNVFPVPDGDTGTNMLLTMTSAVKEIEK-LEEGSVGEVAKALAKGLLMGARGNSGVILS 79 (530)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCccCCcChHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 468999999999999999999999 899999999999999999999983 555789999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhh
Q 013070 386 IFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEV 446 (450)
Q Consensus 386 ~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~ 446 (450)
+||+++++.++++ ++++.++|+++|+.|++.++++ ..+||||||||+|.|+++++++.
T Consensus 80 q~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~a~~a-v~~pgegTmLdvl~~aaea~~~~ 137 (530)
T TIGR03599 80 QIFRGFAKALEDK--EELDAEDLAAAFQEAVETAYKA-VMKPVEGTILTVLREAAEAAEKA 137 (530)
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999876 6899999999999999999975 44699999999999999999754
No 16
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=168.72 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=129.8
Q ss_pred cchHHHHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCCh
Q 013070 302 QQGHVLEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTS 380 (450)
Q Consensus 302 ~~~~~l~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtS 380 (450)
.+...|.+|+.++|+.|.++.+|+|+|+. +|.|||+|+||...++++...+.+ ....+++.+.+.++..++...+|+|
T Consensus 5 i~~~~~~~m~~~ga~~l~~~~~~vN~LNVFPVPDGDTGTNM~~Tm~~~~~~~~~-~~~~~~~~l~~~~s~g~LmGARGNS 83 (542)
T COG1461 5 IDGSLFAEMIIAGANNLSKNADEVNALNVFPVPDGDTGTNMSMTMTSAIKELEN-LKSSSIGELAKILSKGLLMGARGNS 83 (542)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCcccHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhhhccCcc
Confidence 45778999999999999999999999999 999999999999999999999984 4557899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHh
Q 013070 381 GILYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQE 445 (450)
Q Consensus 381 G~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~ 445 (450)
|+|+|+.|+++++.+..+ .+++.+++++||..|.+..++- --+|-+.|||.++.-+++++.+
T Consensus 84 GVIlSQilrGf~~~~~~~--~ei~~~~la~Af~~ave~AYkA-VmkPVEGTILTV~R~~ae~~~~ 145 (542)
T COG1461 84 GVILSQILRGFAAAIADK--EEIDIEDLAKAFQRAVEVAYKA-VMKPVEGTILTVIRSAAEAAKK 145 (542)
T ss_pred hhhHHHHHHHHHHhcccc--cccCHHHHHHHHHHHHHHHHHH-hcCCcCceEEEehHHHHHHHHh
Confidence 999999999999998876 7999999999999999998873 4579999999999999999876
No 17
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=3.1e-14 Score=143.67 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhHHhhhh--ccCCCCCCchhHHHH--HHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHhcCCChHHHHH
Q 013070 311 IEAAAEAVVNLRDRLNE--WDSKVGDGDCGSTMY--RGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (450)
Q Consensus 311 l~~~~~~li~~e~~Ln~--LD~~vGDGD~G~tm~--~G~~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg 385 (450)
++.+....+.+++++++ +|...||||||.||+ +|+..+.+++.. .+.+.++.++|+.++++.....||+||++|+
T Consensus 27 ~~~i~~~~~~~r~~l~~kV~dvsgGgsgHep~~ag~vG~gml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~ 106 (323)
T COG2376 27 LDLIEENGIANREYLSEKVLDVSGGGSGHEPNMAGYVGFGMLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYG 106 (323)
T ss_pred HHhcccchhhhcccCcccceeeeecCCccchhhhccccHHHHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchH
Confidence 33333334589999999 999999999999999 999999999874 2345569999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHhhcC
Q 013070 386 IFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYRTMLDALIPAAAVLQEVKC 448 (450)
Q Consensus 386 ~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~~~~ 448 (450)
..|+.|+.+.+.. ++.+.+.....+...++.++++|+++.|+|||.|+|+|.++.+.+...
T Consensus 107 gd~mnf~~A~e~a--~~~gi~v~~v~v~ddva~~~~rg~~~~rrgtagdvlv~ki~gaaa~~g 167 (323)
T COG2376 107 GDFMNFGMAAEGA--DAEGIKVLTVVVNDDVAVIQSRGKAEGRRGTAGDVLVPKIAGAAAERG 167 (323)
T ss_pred HHHHHHHHHHhhh--hhcCCceEEEEeeccccccccccccccCCceeeeehHHHHHHHHHhcc
Confidence 9999999998765 456667788888999999999999999999999999999999876543
No 18
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=85.50 E-value=41 Score=37.17 Aligned_cols=179 Identities=23% Similarity=0.258 Sum_probs=114.0
Q ss_pred eeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCccc
Q 013070 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRG 82 (450)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~-G~~v~~v~v~DDva~~~~~~~~gRRG 82 (450)
..++|.==.-||..+|++||+.++... |+++=.| =|.=||+|+|... +.+|.+| |.+ .=-.|
T Consensus 337 ~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn-----~nii~aA~qa~~~~~~~v~vv---------pT~--s~~qg 399 (530)
T TIGR03599 337 VVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNN-----KNIILAAEQAAELADKNVVVI---------PTK--TIVQG 399 (530)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCC-----ccHHHHHHHHHHHhCCcEEEE---------eCC--CHHHH
Confidence 345555434799999999999987765 6666665 3888999999764 4444443 222 11233
Q ss_pred cchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccc--cccccCCCCCCCCcCCCceEEeccccCCCCcccccC
Q 013070 83 LAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL--SVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (450)
Q Consensus 83 laG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval--~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (450)
++.. ++=+...++++-.+.-..+..+++|.-|.. ..-++.+ ..+.+|+. |||-+..=+.. =
T Consensus 400 iaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~--~ 462 (530)
T TIGR03599 400 LAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAV--G 462 (530)
T ss_pred HHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEe--c
Confidence 3321 122678899999999999999998876632 2222222 22333333 34433221111 2
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEEeee
Q 013070 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (450)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~-gi~v~r~~~G 230 (450)
++..+.+..+++++++ ++.+++-++-|=+.... .++.+.++++++| ++.+.-.+-|
T Consensus 463 ~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 463 KDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred CCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 4678888999999865 36788888888776665 4577778888887 7888765554
No 19
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=82.78 E-value=15 Score=40.00 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=98.5
Q ss_pred CHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHH
Q 013070 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (450)
Q Consensus 15 s~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~KiaG 94 (450)
++..|.+||+.+.++.|||+++= ---=+||-.||.|+...+ .+-++.++ | . | .+ =|++ .|-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~D-lGSa~~~~e~a~e~~~~~-~~~~v~~~-~-a--p----lV-----Eg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMMD-MGSALLSAETALELLDPE-IAAKVRLC-A-A--P----LV-----EGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEEe-cchHHhHHHHHHHhhccc-ccceEEEe-c-C--c----hH-----hHHH----HHH
Confidence 57899999999999999988875 444589999999998533 22233222 2 1 1 11 1222 244
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-cccccccccccCC-CCCCCCcCCCceEEeccccCCCCcccccCCCHHHHHHHHHH
Q 013070 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLK 172 (450)
Q Consensus 95 A~A~~G~~L~ev~~~~~~~~~~~~-tigval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~ 172 (450)
.+|..|.+|++|.+.++.+...-. .+|.... .|. ..+.-..+.+..+.=+-|.++-|..-.| +..+++..-+
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~n~~GLHARP---Aa~lv~~a~~ 182 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPSS---DTEISDTCPAYDEEARSLSVVIKNRNGLHVRP---ASRLVYTLST 182 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCCC---CcccCCCCCcccccceEEEEEEcCCCCCcHhH---HHHHHHHHhh
Confidence 567899999999999998765433 3443221 111 1111122445566666666666653322 2233332222
Q ss_pred HH----Hh-cc-----cC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 013070 173 QI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (450)
Q Consensus 173 ~l----l~-~~-----~~-----~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~g 221 (450)
.= +. .. ++ -+..+.|+++.+.++|=- |.- ....+.+++++.||
T Consensus 183 f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~D-----e~~-Al~~l~~l~~~~fg 240 (473)
T PRK11377 183 FNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGPE-----AEE-ALIAFRQLAEDNFG 240 (473)
T ss_pred CCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCcC-----HHH-HHHHHHHHHHhccC
Confidence 10 00 00 00 145567899999999832 222 22555566655544
No 20
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=76.79 E-value=13 Score=33.05 Aligned_cols=78 Identities=29% Similarity=0.316 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhccC-CCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHH-
Q 013070 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKI- 92 (450)
Q Consensus 15 s~~~i~~ai~~v~~-~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~Ki- 92 (450)
++++|.++|+.+.+ +.|||+++== -|=++|..+|.++.+.+.. +.|..-| . -+|...
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n-l-----------------Plvega~ 102 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD-A-----------------PLVEGAF 102 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec-h-----------------hHHHHHH
Confidence 57889999999966 8888888765 8899999999999865533 2222211 1 133333
Q ss_pred HHH-HHHcCCCHHHHHHHHHHH
Q 013070 93 AGA-AAAAGLSLADVAAEAKRA 113 (450)
Q Consensus 93 aGA-~A~~G~~L~ev~~~~~~~ 113 (450)
+.| .+..|.||+||.+.++..
T Consensus 103 ~aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 103 AAAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 333 446899999999888753
No 21
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=73.84 E-value=3.9 Score=42.48 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=45.7
Q ss_pred eeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeeccc----ccccHHHHHHHHHhcCCc-EEE
Q 013070 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK-VEI 62 (450)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtG----D~lnFglA~e~a~~~G~~-v~~ 62 (450)
.+..||+|+|..-.|+-.|++.+....|||+..- ..| |-=+||+++++.+.-|++ ++.
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYLr-qegr~an~~RdygigaqIL~dLGi~~irL 314 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFLN-TESKENNQVKDYGIGAQILKYLGIKDIKL 314 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCcccccchhHHHHHHHHCCCCEEEE
Confidence 3567899999988999999999875559887553 333 578999999999999975 443
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=62.41 E-value=6 Score=36.85 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=37.7
Q ss_pred eeccCCccCC---CCHHHHHHHHHhcc-CCCCeEEEEee-------------------------------cccccccHHH
Q 013070 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (450)
Q Consensus 4 aav~G~vFaS---Ps~~~i~~ai~~v~-~~~Gvl~iv~N-------------------------------YtGD~lnFgl 48 (450)
.++.||+|-| ....|+-.|++.+. .+.|||+.+.+ +..|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 3566899998 66788888998887 56799999831 1256678999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 013070 49 AAEQAKSEGYKVEIVIV 65 (450)
Q Consensus 49 A~e~a~~~G~~v~~v~v 65 (450)
+++.++.-|++ +|.+.
T Consensus 131 gaqIL~dLGV~-~~rLL 146 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLL 146 (169)
T ss_dssp HHHHHHHTT---SEEEE
T ss_pred HHHHHHHcCCC-EEEEC
Confidence 99999988876 44443
No 23
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=60.77 E-value=9.5 Score=40.15 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=39.8
Q ss_pred eeccCCccCCC----CHHHHHHHHHhccC-CCCeEEEEeeccc------------------------ccccHHHHHHHHH
Q 013070 4 AAICGDVFASP----PVDSILAGIHAVTG-PMGCLLIVTNYTG------------------------DRLNFGLAAEQAK 54 (450)
Q Consensus 4 aav~G~vFaSP----s~~~i~~ai~~v~~-~~Gvl~iv~NYtG------------------------D~lnFglA~e~a~ 54 (450)
.+..||||-|. .-.|...|++.+.. +.|||+...|-.| |--+||+|+++.|
T Consensus 256 ecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqILr 335 (369)
T PRK12485 256 IDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQILQ 335 (369)
T ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHHH
Confidence 46789999884 35689999999765 4588886653222 0115778888888
Q ss_pred hcCCc-EEE
Q 013070 55 SEGYK-VEI 62 (450)
Q Consensus 55 ~~G~~-v~~ 62 (450)
.-|++ |+.
T Consensus 336 ~LGV~kirL 344 (369)
T PRK12485 336 DLGVGKLRH 344 (369)
T ss_pred HcCCCEEEE
Confidence 87764 444
No 24
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=59.64 E-value=17 Score=32.47 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=56.9
Q ss_pred CHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHH
Q 013070 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (450)
Q Consensus 15 s~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~KiaG 94 (450)
++++|.++|+.+++ .|||+++== -|=.+|-.||.|+...+ .+|++ .| ..+ + =|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~~---~d-aPl------V-----EGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKIII---ID-API------V-----EGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEEE---EC-CcH------H-----HHHH----HHH
Confidence 57899999999999 999998876 89999999999999655 44443 23 211 1 1121 234
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 013070 95 AAAAAGLSLADVAAEAKRA 113 (450)
Q Consensus 95 A~A~~G~~L~ev~~~~~~~ 113 (450)
..|..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 4668899999999988864
No 25
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=55.67 E-value=16 Score=34.67 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=25.4
Q ss_pred eeccCCccCCCC---HHHHHHHHHhcc-CCCCeEEEEe
Q 013070 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (450)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~ 37 (450)
.+..||||.|.. ..|+..|++.+. .++|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 356789998753 378888999876 5669988775
No 26
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.74 E-value=19 Score=34.39 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred eeccCCccCCCCH---HHHHHHHHhcc-CCCCeEEEEe
Q 013070 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (450)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~v~-~~~Gvl~iv~ 37 (450)
.+..||||.|... .|+..|++.+. .+.|||+.+.
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~ 90 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLR 90 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEc
Confidence 3567889987633 68888999976 5569988774
No 27
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=50.55 E-value=28 Score=30.49 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=34.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeee
Q 013070 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (450)
Q Consensus 191 ~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G 230 (450)
.+=|..+|+.+.-.---+...+.+.|++++||...|+|+-
T Consensus 60 ~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~ 99 (113)
T PTZ00450 60 YVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVF 99 (113)
T ss_pred EEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3448999999987677788999999999999999999984
No 28
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=48.95 E-value=26 Score=33.32 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=24.8
Q ss_pred eccCCccCCCCH---HHHHHHHHhcc-CCCCeEEEEe
Q 013070 5 AICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (450)
Q Consensus 5 av~G~vFaSPs~---~~i~~ai~~v~-~~~Gvl~iv~ 37 (450)
+..+|||.+... .|+..|++.+. .+.|||+++.
T Consensus 53 ~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 53 CLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred CCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 456889986533 67888999986 4569988775
No 29
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=48.20 E-value=56 Score=32.53 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHh-ccCCCC-eEEEE--eecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 013070 12 ASPPVDSILAGIHA-VTGPMG-CLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (450)
Q Consensus 12 aSPs~~~i~~ai~~-v~~~~G-vl~iv--~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (450)
+.||+.++.+..+. ...+.- ||+|- ...+|=-=|.-+|+++. .+.+|.+ + | -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V--i-D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV--I-D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE--E-E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE--E-e-----------CCCcchhhh
Confidence 45889999999987 555544 66554 34555555666666666 3445433 2 2 133345556
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccc------ccccCC----------CCCCCCcCCCceEEeccccC
Q 013070 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (450)
Q Consensus 88 ~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~------~c~~Pg----------~~~~~~l~~~e~E~G~GiHg 151 (450)
++..-|-.++++|+|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66666778999999999999999999998887633111 000000 01223333344432
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEEeee
Q 013070 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (450)
Q Consensus 152 EpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi-~v~r~~~G 230 (450)
..+..+.+..++.|++.+... ..-. ....+.+...- .. | .+.++.+.|+++++. .+....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~~~-~~~~i~i~~~~---~~-e---~a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IKDP-KNYRIAISHAG---NE-E---EAEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HCTG-CGEEEEEEESS----H-H---HHHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hhcC-CceeEEEEEcC---CH-H---HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 245566778888888887332 1112 22333333321 22 3 235556666666565 55555566
Q ss_pred ccccc
Q 013070 231 SFMTS 235 (450)
Q Consensus 231 ~~~TS 235 (450)
.-+++
T Consensus 262 ~~i~~ 266 (280)
T PF02645_consen 262 PVIGA 266 (280)
T ss_dssp HHHHH
T ss_pred cEEEE
Confidence 55554
No 30
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=47.79 E-value=42 Score=33.33 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccc
Q 013070 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (450)
Q Consensus 12 aSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDv 69 (450)
...+++++-++++.-...+.+++.--||+|.+.+..--++.+++.|+ .++-|++
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA 191 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEA 191 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECc
Confidence 45688999888876334455555556999999999888888988775 3445555
No 31
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=47.59 E-value=64 Score=32.08 Aligned_cols=94 Identities=22% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHhccC-CCCeEEEE--eecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 013070 12 ASPPVDSILAGIHAVTG-PMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (450)
Q Consensus 12 aSPs~~~i~~ai~~v~~-~~Gvl~iv--~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~ 88 (450)
+.||+.++.++.+.... +.-||+|- ..-+|=.=|+-+|+++.. +++|. |=| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~i~---ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAKVT---VID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCCEE---EEC-----------ChHHHHHHHH
Confidence 34788889899876543 33455543 344454445555555442 23322 222 2344567778
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccc
Q 013070 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMG 121 (450)
Q Consensus 89 v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tig 121 (450)
+..-|..+.++|.+++||.+..++..+++.+.=
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f 156 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYF 156 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEE
Confidence 888899999999999999999999999988763
No 32
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=44.73 E-value=21 Score=38.54 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=28.5
Q ss_pred ceeccCCccCCCCH---HHHHHHHHhcc-CCCCeEEEEeeccc
Q 013070 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (450)
Q Consensus 3 ~aav~G~vFaSPs~---~~i~~ai~~v~-~~~Gvl~iv~NYtG 41 (450)
+.+..||||-|..- .|+-+|++.+. .+.|||+.+-|-.|
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qeg 332 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEG 332 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCc
Confidence 35678999998643 68888999986 55699887763343
No 33
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=44.59 E-value=44 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeee
Q 013070 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (450)
Q Consensus 190 v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G 230 (450)
+.+=|...|+.+....--+++++.+.|++.+|+.+.|+|+-
T Consensus 59 a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 59 CFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 34447888999987788899999999999999999999984
No 34
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=41.98 E-value=54 Score=28.90 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCCcc
Q 013070 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (450)
Q Consensus 164 ~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~Gf 241 (450)
.+-+..++..|.+ +++-.+..++.|.+||-|-....+-......-...|.++ |+++ .-+|+=|++.|++.-
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~--~aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEF--VACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEE--EEecchHHHcCCCHH
Confidence 5566677777654 456567889999999999888888777776566777777 8776 478999999887744
No 35
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.23 E-value=31 Score=36.34 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=40.9
Q ss_pred eeccCCccCCC---CHHHHHHHHHhcc-CCCCeEEEEeec-cc---------------------ccccHHHHHHHHHhcC
Q 013070 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (450)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~v~-~~~Gvl~iv~NY-tG---------------------D~lnFglA~e~a~~~G 57 (450)
.+..||||-|- ...|+..|++.+. .+.|||+...|- .| |-=+||+|++..+.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 45679999874 3678999999976 455998866543 12 3446788888888877
Q ss_pred Cc-EEE
Q 013070 58 YK-VEI 62 (450)
Q Consensus 58 ~~-v~~ 62 (450)
++ |+.
T Consensus 336 v~~irL 341 (367)
T PRK14019 336 VGKMRL 341 (367)
T ss_pred CCeEEE
Confidence 64 443
No 36
>PRK08815 GTP cyclohydrolase; Provisional
Probab=39.95 E-value=25 Score=37.09 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=28.3
Q ss_pred eeccCCccCCC---CHHHHHHHHHhcc-CCCCeEEEEeeccccc
Q 013070 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTGDR 43 (450)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~v~-~~~Gvl~iv~NYtGD~ 43 (450)
.+..||||-|. .-.|.-+|++.+. .++|||+.+ |-.|-.
T Consensus 224 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegrg 266 (375)
T PRK08815 224 SCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRG 266 (375)
T ss_pred cCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCcc
Confidence 46779999875 3478889999975 567998866 545433
No 37
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=39.31 E-value=38 Score=36.12 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.1
Q ss_pred eeccCCccCCCC---HHHHHHHHHhcc-CCCCeEEEEe
Q 013070 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (450)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~v~-~~~Gvl~iv~ 37 (450)
.+..||||-|-. ..|+-.|++.+. .+.|||+.+.
T Consensus 257 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 466799998743 478888999976 5569988776
No 38
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=39.28 E-value=40 Score=35.27 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=73.6
Q ss_pred HHHHHH-------HHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCcCCCceEEeccccCCCCcccccCC
Q 013070 89 VNKIAG-------AAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (450)
Q Consensus 89 v~KiaG-------A~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (450)
|+||.| .+.++|++-+|+.+-. -.++|| ..-+|++++|||-+=||.-|-
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~t------g~vvGv---------~~~sl~v~~GeIfViMGLSGS--------- 65 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKKT------GLVVGV---------NDASLDVEEGEIFVIMGLSGS--------- 65 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHhh------CcEEee---------ccceeeecCCeEEEEEecCCC---------
Confidence 456666 3568899988887532 223333 567899999999999998863
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEc--CCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccCCC
Q 013070 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMIN--GLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (450)
Q Consensus 162 ~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvN--nLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSldm~ 239 (450)
-+...-+++++|.++++ | + ++|+ +.-..+.-||--+-++-....-++|++-|+| |-|+-.
T Consensus 66 -GKSTLvR~~NrLiept~-------G-~--ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr-------tVl~Nv 127 (386)
T COG4175 66 -GKSTLVRLLNRLIEPTR-------G-E--ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR-------TVLENV 127 (386)
T ss_pred -CHHHHHHHHhccCCCCC-------c-e--EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch-------hHhhhh
Confidence 34555667778765432 2 1 2333 3344555566555555554444555655554 566667
Q ss_pred cceEEEeecc
Q 013070 240 GFSISIMKAD 249 (450)
Q Consensus 240 GfSiTll~ld 249 (450)
+|.+.+=-++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 7777776666
No 39
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=38.02 E-value=4.6e+02 Score=26.85 Aligned_cols=176 Identities=20% Similarity=0.289 Sum_probs=100.1
Q ss_pred eeccCCccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCcc
Q 013070 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRR 81 (450)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRR 81 (450)
..|.|.-=-.||+..+++||+.++..+ |+++-.| -|.=||+++|.+. +.+|.+ | |.+ .=-.
T Consensus 119 ~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~V--i-------pTk--s~~q 181 (313)
T PF13684_consen 119 VVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVV--I-------PTK--SIPQ 181 (313)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEE--E-------ecC--CHHH
Confidence 345555435799999999999986654 5555544 4677888877653 333222 2 222 1223
Q ss_pred ccchhhhHHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCcCCCceEEeccccCCCCcccccCC
Q 013070 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (450)
Q Consensus 82 GlaG~v~v~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (450)
|++..+ +-+...++++-.+.-+.+..+++|.-+.-.... +.-....+..|+. +||.+..-+... .
T Consensus 182 GlaAl~--------~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd--~~~~~~~i~~gd~---igl~~~~i~~~~--~ 246 (313)
T PF13684_consen 182 GLAALL--------VFDPEADLEENVEAMTEAAARVRTGEITYAVRD--TKINGGEIKKGDY---IGLVDGKIVVVG--K 246 (313)
T ss_pred HHHHHH--------HhCccCChHHHHHHHHHHHhhCeeeeEEEeeec--ceecCcccccCCE---EEEeCCEEEEEc--C
Confidence 443211 113445888888888888888887766443111 1111222333333 555444433322 3
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEE
Q 013070 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVE 225 (450)
Q Consensus 162 ~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~-gi~v~ 225 (450)
+..+.+..+++++++ ++.+++-++=| ..++.-| +..+.++|+++| ++.+.
T Consensus 247 ~~~~~~~~ll~~l~~---------~~~elvTi~~G-~~~~~~~----a~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 247 DLEEALKKLLEKLLD---------EDGELVTIYYG-EDVSEEE----AEALAEFLEEKYPDVEVE 297 (313)
T ss_pred CHHHHHHHHHHHhhc---------cCCeEEEEEec-CCCCHHH----HHHHHHHHHHHhCCeEEE
Confidence 477888888888754 35678888777 4444434 445555666665 56655
No 40
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=37.93 E-value=54 Score=30.51 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=52.9
Q ss_pred EeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 013070 145 LGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (450)
Q Consensus 145 ~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v 224 (450)
+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +|+-++.++|+++ |.+|
T Consensus 31 ~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~Le~~-G~~v 94 (229)
T PF00975_consen 31 YGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQLEEA-GEEV 94 (229)
T ss_dssp EEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHHHHT-T-SE
T ss_pred EEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHHHHh-hhcc
Confidence 344444433 23456689999999999999763 223389999999997 6888889999999 9999
Q ss_pred EEEe-eeccccc
Q 013070 225 ERVY-TGSFMTS 235 (450)
Q Consensus 225 ~r~~-~G~~~TS 235 (450)
.++. +.+..+.
T Consensus 95 ~~l~liD~~~p~ 106 (229)
T PF00975_consen 95 SRLILIDSPPPS 106 (229)
T ss_dssp SEEEEESCSSTT
T ss_pred CceEEecCCCCC
Confidence 7765 4444443
No 41
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=36.88 E-value=79 Score=32.47 Aligned_cols=85 Identities=28% Similarity=0.408 Sum_probs=59.3
Q ss_pred cccccccccCCCCCCCCcCCCceEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCC
Q 013070 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (450)
Q Consensus 121 gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~t 200 (450)
-++|..|+.|+-.+ ...+..+-||-.+-.|+ .++..|+..+++.. + ==+...+|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~~--------~-~kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEKN--------G-IKVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHhc--------C-CceeeccCCCch
Confidence 45678899887222 45567777776655554 68888998888752 1 226678999999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccccccC
Q 013070 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (450)
Q Consensus 201 s~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSld 237 (450)
+. +.+.|..- .|++.--|.|+-.+++.
T Consensus 73 ~v---------~~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AV---------VRNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HH---------HHHHHHcC-CCCeEeeecchhhhhhc
Confidence 76 34445555 78999889998877643
No 42
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=36.54 E-value=2.6e+02 Score=30.75 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=77.2
Q ss_pred HHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---cchh-------hh
Q 013070 22 GIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------IL 88 (450)
Q Consensus 22 ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva---~~~~~~~~gRRG---laG~-------v~ 88 (450)
+.+.+.++.|-+++.+||-||+|. .+++...-.-|.- -.+.+++|-. .++..+.+-|.- ++|- -.
T Consensus 324 ~~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~ 401 (483)
T PLN03065 324 VAYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 401 (483)
T ss_pred HHHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHH
Confidence 346778889999999999999997 5888887777754 4566788853 244444433311 2222 23
Q ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHhhhc-cccccccccccCCCCCCCCcCCCceEEeccccCCCCcccccCCCHHH
Q 013070 89 VNKIAGAAAAAGL--SLADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDV 165 (450)
Q Consensus 89 v~KiaGA~A~~G~--~L~ev~~~~~~~~~~~~-tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~ 165 (450)
++=.+..+.-.|. .-+++.+.|+++-+.+. |+.- | .-+- .+|.=+||. ...+....+-.|
T Consensus 402 IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~--------G-~~T~-------DLg~~~~G~-~~~~~~~~~T~e 464 (483)
T PLN03065 402 IFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES--------G-KMTK-------DLAILIHGP-KVSREFYLNTEE 464 (483)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc--------C-Cccc-------ccccccCCC-cccCCCCcCHHH
Confidence 3334445555565 22355566666555433 2211 1 0111 244446672 123445567778
Q ss_pred HHHHHHHHHH
Q 013070 166 VVSHVLKQIL 175 (450)
Q Consensus 166 lv~~ml~~ll 175 (450)
..+.+.++|-
T Consensus 465 f~daV~~~L~ 474 (483)
T PLN03065 465 FIDAVAQTLA 474 (483)
T ss_pred HHHHHHHHHH
Confidence 8888888773
No 43
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=35.82 E-value=3.2e+02 Score=30.79 Aligned_cols=109 Identities=8% Similarity=0.014 Sum_probs=69.5
Q ss_pred CchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 013070 335 GDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVM-GGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALE 413 (450)
Q Consensus 335 GD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~-GGtSG~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~ 413 (450)
.|.+..+.....++....-. ..-.=.+.+|..++..+.+.. |..+-.-|+.+|.++...++.....++.-+.+.++|.
T Consensus 430 ~~~~~~l~~ig~a~~~~vGG-SSG~Lyg~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~eaI~~rG~Ak~GDKTMlDaL~ 508 (584)
T PTZ00375 430 ANVRKTLTLISKAVADAFGG-SSGPLYGAFLLGGANALAEALNGGNAVDAVRAALAAGSHSIQELGGARVGDRTMVDVLI 508 (584)
T ss_pred CCHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeeeeeeHH
Confidence 46777777777766655431 111126678899999997644 4444577888999888888764445666667777888
Q ss_pred HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHh
Q 013070 414 ASIAAVSKYGGATAGYRTMLDALIPAAAVLQE 445 (450)
Q Consensus 414 ~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~ 445 (450)
-+++++++--....| .++-++|.-++++-++
T Consensus 509 Pa~~al~~~~~~~~~-~~~~~~l~~Aa~aA~~ 539 (584)
T PTZ00375 509 PFAEALNSCPSVNEA-ASSPELLKACSEEARE 539 (584)
T ss_pred HHHHHHHHhhhcccC-CCHHHHHHHHHHHHHH
Confidence 888777663221122 3566667666555543
No 44
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=33.42 E-value=50 Score=31.99 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=28.1
Q ss_pred eccCCccC--------CCCHHHHHHHHHhccC-CCCeEEEEeecc
Q 013070 5 AICGDVFA--------SPPVDSILAGIHAVTG-PMGCLLIVTNYT 40 (450)
Q Consensus 5 av~G~vFa--------SPs~~~i~~ai~~v~~-~~Gvl~iv~NYt 40 (450)
.++||+|- +|...++.+.++.... +..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 5667788888877753 468999999995
No 45
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=33.05 E-value=86 Score=29.47 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=38.1
Q ss_pred CCCC-CCCCCeEEEEEcC--------------------CCCCh-----HHHHHHHHHHHHHhhhhhcCCeEEEE-eeecc
Q 013070 180 NYVP-ITRGNRVVLMING--------------------LGATP-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGSF 232 (450)
Q Consensus 180 ~~~~-~~~~~~v~vlvNn--------------------LG~ts-----~lEl~~~~~~~~~~L~~~~gi~v~r~-~~G~~ 232 (450)
.|++ .++||+=++++|| .||+. .-+..-+++.+...|.++ |+.-+++ .+|.|
T Consensus 76 ~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~~ 154 (173)
T PF02955_consen 76 PFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGDK 154 (173)
T ss_dssp E--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETTE
T ss_pred eccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEeccccc
Confidence 4665 5678999999997 57754 346667889999999999 9876664 35777
Q ss_pred ccccC
Q 013070 233 MTSLD 237 (450)
Q Consensus 233 ~TSld 237 (450)
+|-.|
T Consensus 155 l~EiN 159 (173)
T PF02955_consen 155 LTEIN 159 (173)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 77544
No 46
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=32.26 E-value=76 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.6
Q ss_pred EEEeecccccccHHHHHHHHHhcCCcEEEEEe
Q 013070 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIV 65 (450)
Q Consensus 34 ~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v 65 (450)
+.|-||+| |+..-|.+.+++.|+++..+-.
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEE
Confidence 45789999 9999999999999998877775
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=30.85 E-value=58 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=25.8
Q ss_pred CccCCCCHHHHHHHHHhccCCCCeEEEEeeccc
Q 013070 9 DVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (450)
Q Consensus 9 ~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtG 41 (450)
.|.-.|++++.++.......+.+.++|+.|||.
T Consensus 80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 80 KIIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred HeEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 355578888888886556777888999999994
No 48
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.29 E-value=83 Score=28.36 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 013070 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (450)
Q Consensus 14 Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v~Kia 93 (450)
-|+.+|.+||...+...++|+++ ---.=+||-.||.|+...+ +.++..+ .| .|-. . |.+ .+
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~-~d---aPlV---E------Ga~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNIL-CD---APLV---E------GAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhh-cc---cchh---h------hHH----HH
Confidence 36899999999877777766655 4778899999999999554 4544432 22 2211 1 111 24
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 013070 94 GAAAAAGLSLADVAAEAKR 112 (450)
Q Consensus 94 GA~A~~G~~L~ev~~~~~~ 112 (450)
-+.++.|.|++||..-+.+
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4566889999888765543
No 49
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=29.37 E-value=38 Score=34.98 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=31.5
Q ss_pred HhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccC
Q 013070 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCAL 71 (450)
Q Consensus 24 ~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~ 71 (450)
.++.+..|-++-.|||.|||..==+| +---+-|.=..+++.-|--.+
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~vA-Qg~GSLGlMTSVLv~pdGKT~ 313 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIVA-QGYGSLGLMTSVLVCPDGKTV 313 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHHH-hcccchhhheeEEEcCCCCee
Confidence 44568899999999999999764333 223345666666666554444
No 50
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.17 E-value=44 Score=35.50 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=28.1
Q ss_pred ceeccCCccCCCC---HHHHHHHHHhccCCCCeEEEEeeccccc
Q 013070 3 TAAICGDVFASPP---VDSILAGIHAVTGPMGCLLIVTNYTGDR 43 (450)
Q Consensus 3 ~aav~G~vFaSPs---~~~i~~ai~~v~~~~Gvl~iv~NYtGD~ 43 (450)
+.+..||||-|-. -.|+-.|++.+....|||+. -|..|--
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvY-Lrqegrg 281 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIY-LRQEGRG 281 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEE-ECCCCcc
Confidence 3567899998743 37899999998744499864 4556533
No 51
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.14 E-value=5.1e+02 Score=26.19 Aligned_cols=193 Identities=14% Similarity=0.135 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHhccCCC--CeEEEE--eecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhH
Q 013070 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (450)
Q Consensus 14 Ps~~~i~~ai~~v~~~~--Gvl~iv--~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v~v 89 (450)
||+..+.++.+...... .||+|- ..-+| .|.. +..|++..-+.++.+++=..+. .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77788888888877543 455443 22233 2444 4445544333444444432222 233445
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhccccc--cccccccCCC--------------CCCCCcCCCceEEeccccCCC
Q 013070 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV--ALSVCTLPGQ--------------VTSDRLGPGKMELGLGIHGEP 153 (450)
Q Consensus 90 ~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigv--al~~c~~Pg~--------------~~~~~l~~~e~E~G~GiHgEp 153 (450)
.+-+..++++|.|++|+.+..+++.+++.+.=+ -|+++.-=|+ +|...+.+|++++
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~lg~lL~ikPIl~~~~G~~~~-------- 199 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFLGNLLKIKPILSFEDGELVL-------- 199 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHHHhhhcceEEEEEeCCEEEE--------
Confidence 555678999999999999999999998776533 2444443332 1223333344432
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEEeee-
Q 013070 154 GAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG- 230 (450)
Q Consensus 154 G~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~--v~r~~~G- 230 (450)
-.+..+.+..++.|++.+.+. .. +.....++++.+-+. | ......+.|.++ ++. +.-...|
T Consensus 200 ---~~K~R~~kka~~~l~~~~~~~----~~-~~~~~~~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~ 263 (282)
T COG1307 200 ---LGKVRGQKKAIKKLIELLKKE----VK-DGAGYRVAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGP 263 (282)
T ss_pred ---EeecccHHHHHHHHHHHHHHH----hc-cCCceEEEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCC
Confidence 246667778888888888764 22 222333444444222 2 334445555555 433 3434444
Q ss_pred ccccccCCCcceEEEe
Q 013070 231 SFMTSLDMAGFSISIM 246 (450)
Q Consensus 231 ~~~TSldm~GfSiTll 246 (450)
...|-.+-..++|.+.
T Consensus 264 vi~~H~G~ga~~i~~~ 279 (282)
T COG1307 264 VIGTHTGPGALGIGVI 279 (282)
T ss_pred EEEEEECCCeEEEEEE
Confidence 3334555555555554
No 52
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=29.05 E-value=2.6e+02 Score=27.06 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=36.9
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEE
Q 013070 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVE 225 (450)
Q Consensus 151 gEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~-~gi~v~ 225 (450)
+=||.-..+..+...++..+++.|... |=+-+|+||+=|| + .-..+.+.++|..+ .++.+.
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N---~~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--N---IAALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--H---HHHHHHHHHHHHHHGCC-EEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--H---HHHHHHHHHHHHhhCCCcEEE
Confidence 357776666666777777777777653 4456999999999 2 22345555555555 466654
No 53
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=28.37 E-value=2e+02 Score=29.47 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeecccccc
Q 013070 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (450)
Q Consensus 165 ~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~TSl 236 (450)
+.+.+.++.+..+ ++-+.++|.||.=||+..- =..+++++ +.|.++ + |+.++++.++-|=
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~a-s~~i~~~l-~~l~~~-~--PV~v~v~~~AASG 142 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVVA-SELIARAL-KRLRAK-K--PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchhH-HHHHHHHH-HHHhhc-C--CEEEEECCeecch
Confidence 4455566666442 3456799999999998763 33344444 455666 5 8889998877763
No 54
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=28.23 E-value=49 Score=28.52 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeee
Q 013070 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (450)
Q Consensus 191 ~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G 230 (450)
.+=|..+|+.+.-+--.++.++.+.|++++||...|+|+=
T Consensus 58 ~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 58 FVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 3448899999888888999999999999999999999974
No 55
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=27.73 E-value=78 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=23.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 013070 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (450)
Q Consensus 192 vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r 226 (450)
++|| .|+.+.-+..-+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 4455 688888899999999999999999987653
No 56
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=26.25 E-value=1.3e+02 Score=30.12 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=61.9
Q ss_pred cCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-ccccchhhhH
Q 013070 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILV 89 (450)
Q Consensus 11 FaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~~~g-RRGlaG~v~v 89 (450)
|..|..++|+++++.. +..=++++.+|++ +. .+....-|+++=.+-...|.+-.. ...| |.-+.|.+=.
T Consensus 205 ~~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~~--~~~g~~~~i~G~id~ 274 (330)
T cd03465 205 FSLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEAK--KKVGDKACLMGNLDP 274 (330)
T ss_pred HhhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHHH--HHhCCceEEEeCcCh
Confidence 3467778888888764 3344666667665 11 344444565542222223444222 2344 5678888755
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcc--cccccc-ccccCCC
Q 013070 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQ 132 (450)
Q Consensus 90 ~KiaGA~A~~G~~L~ev~~~~~~~~~~~~t--igval~-~c~~Pg~ 132 (450)
...+ ...+-+||.+-.+++.+.+.. =|.-|+ .|.+|-+
T Consensus 275 ~~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~ 315 (330)
T cd03465 275 IDVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPD 315 (330)
T ss_pred HHhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 5221 234669999999999988765 344443 3777753
No 57
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.43 E-value=48 Score=32.87 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHh----------cCCcEEEE--EecccccCCC
Q 013070 16 VDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKS----------EGYKVEIV--IVGDDCALPP 73 (450)
Q Consensus 16 ~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~----------~G~~v~~v--~v~DDva~~~ 73 (450)
++-|.+||+.+...++..+|+..=.|=.+|=..|.|.|+. |||+=+++ .|++.|++++
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGD 133 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGD 133 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeecc
Confidence 5678899999988878889999999999999999999987 46654443 6778888874
No 58
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=24.15 E-value=96 Score=29.83 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=26.4
Q ss_pred eccCCccCC------C--CHHHHHHHHHhccC-CCCeEEEEeecc
Q 013070 5 AICGDVFAS------P--PVDSILAGIHAVTG-PMGCLLIVTNYT 40 (450)
Q Consensus 5 av~G~vFaS------P--s~~~i~~ai~~v~~-~~Gvl~iv~NYt 40 (450)
.++||+|-. | ...++.+.++.... +..|.+|.+|+-
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD 79 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRD 79 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 478999962 2 23567777777653 578999999996
No 59
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=23.55 E-value=2.4e+02 Score=28.51 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=35.6
Q ss_pred ccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHH-HHHHHhcCCcEEEEEecc
Q 013070 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLA-AEQAKSEGYKVEIVIVGD 67 (450)
Q Consensus 10 vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA-~e~a~~~G~~v~~v~v~D 67 (450)
+|++.....+..++...-..+|..+++.| -.|+.. ...++..|.++..|-+.+
T Consensus 58 ~~t~~~t~al~~~~~~l~~~~~~vlv~~~-----~~~~~~~~~~a~~~g~~~~~v~~~~ 111 (363)
T TIGR02326 58 LLQGSGTFAVEAVIGSAVPKDGKLLVVIN-----GAYGARIVQIAEYLGIPHHVVDTGE 111 (363)
T ss_pred EEcCCCHHHHHHHHHhcCCCCCeEEEEeC-----ChhhHHHHHHHHHcCCceEEEeCCC
Confidence 47888888888888777666666555543 145543 455677898888776543
No 60
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.53 E-value=2.5e+02 Score=27.57 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=33.2
Q ss_pred eccCCccCCCC--HHH---HHHHHHhccC-C-CCeEEEEeeccc-ccccHHHHHHHHHhcCCcE
Q 013070 5 AICGDVFASPP--VDS---ILAGIHAVTG-P-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (450)
Q Consensus 5 av~G~vFaSPs--~~~---i~~ai~~v~~-~-~Gvl~iv~NYtG-D~lnFglA~e~a~~~G~~v 60 (450)
.++||+|=... ... +...++.+.. . -.|++|.+|+-- +++++ ..+.++..|+.|
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 57899998754 322 2345544432 3 589999999963 45554 455566666543
No 61
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=23.42 E-value=2.2e+02 Score=33.13 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013070 311 IEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (450)
Q Consensus 311 l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ 386 (450)
-+.+-+.+..++.+|=+||-. .||...=++.-++|...-. | ..+.++..+|.-+...+||-.|.-||+
T Consensus 880 wEsIKdQierakaeLLRLDlH--EGD~p~WikqL~~At~DvW----P--aaA~~~~~iGnfL~~ta~giFGtafs~ 947 (981)
T PF03408_consen 880 WESIKDQIERAKAELLRLDLH--EGDYPAWIKQLASATKDVW----P--AAASFLSGIGNFLSGTAGGIFGTAFSI 947 (981)
T ss_pred HhhHHHHHHHHHHHHheeecc--cCCcHHHHHHHHHHhhhhh----H--HHHHHHHHHHHHhhhccccccchHHHH
Confidence 456778889999999999976 5667766666555543322 2 367789999988877776665554444
No 62
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=23.11 E-value=80 Score=35.13 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=27.9
Q ss_pred ceeccCCccCCCC---HHHHHHHHHhccC-CCCeEEEEeeccc
Q 013070 3 TAAICGDVFASPP---VDSILAGIHAVTG-PMGCLLIVTNYTG 41 (450)
Q Consensus 3 ~aav~G~vFaSPs---~~~i~~ai~~v~~-~~Gvl~iv~NYtG 41 (450)
+.+..||||-|-- -.|.-+|++.+.. +.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 4567899998763 4789999999864 55887755 5554
No 63
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=22.49 E-value=1.5e+02 Score=28.32 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEE
Q 013070 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIV 63 (450)
Q Consensus 14 Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v 63 (450)
+....++++++.-.-...|.++|.|-..- -+.+.|++.||++..+
T Consensus 13 s~~~~ll~~~~~~~~~~~I~~vvs~~~~~-----~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 13 SNLQAIIDACAAGQLPAEIVAVISDRPDA-----YGLERAEAAGIPTFVL 57 (200)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCccc-----hHHHHHHHcCCCEEEE
Confidence 66677777765544456788888887632 2688899999998654
No 64
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=22.10 E-value=4.7e+02 Score=22.18 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhccccccccccccCCCCCCCCcCCCceEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 013070 107 AAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITR 186 (450)
Q Consensus 107 ~~~~~~~~~~~~tigval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~ 186 (450)
.++|+.+.+.+...|+-..-+.+..-.+..-.+.+-+=+|..+|+.-- ++ ..-+..+++.|.. ..+ +
T Consensus 13 ~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~-----~p--~~~~~~f~~~l~~-----~~~-~ 79 (140)
T TIGR01753 13 EEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDED-----LE--QDDFEPFFEELED-----IDL-G 79 (140)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCC-----CC--cchHHHHHHHhhh-----CCC-C
Confidence 455666666665555543333332222222235678899999986421 11 1233444554432 112 3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEE
Q 013070 187 GNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVE 225 (450)
Q Consensus 187 ~~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~ 225 (450)
+.+++++- .|+.+. +..-..+.+.+.|+++ |.+++
T Consensus 80 gk~~~vfg--t~g~~~-~f~~~~~~~~~~l~~~-g~~~v 114 (140)
T TIGR01753 80 GKKVALFG--SGDWGY-EFCEAVDDWEERLKEA-GATII 114 (140)
T ss_pred CCEEEEEe--cCCCCc-hhhHHHHHHHHHHHHC-CCEEe
Confidence 66676665 445443 2445667778888776 87764
No 65
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=21.85 E-value=1.5e+02 Score=30.46 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCC
Q 013070 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALP 72 (450)
Q Consensus 14 Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~ 72 (450)
++++++.++++....++--++++.||+|-.....--++.|++.|+ ++|-|.+-..
T Consensus 105 ~d~~~l~~~i~~~~~~~t~~v~~~~~~G~~~~~~~i~~l~~~~~~----~lI~D~a~a~ 159 (380)
T TIGR03588 105 IDEDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGL----KIIEDASHAL 159 (380)
T ss_pred cCHHHHHHHhhcccCCCceEEEEeCCCCccCCHHHHHHHHHHcCC----EEEEECCCcc
Confidence 567778777765432344566788999999988888888887764 4666666543
No 66
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.81 E-value=3.4e+02 Score=25.13 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 013070 356 YPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYR 430 (450)
Q Consensus 356 ~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDk 430 (450)
+...++.++|..++.. +..=|+.||..++..+... +. ..+.++++.+++...+.+.=+.-|+
T Consensus 46 y~~tpL~eal~~i~~~--------~~~~~~~~f~~~a~~L~~~--~~---~~~~~~w~~~~~~~~~~~~L~~~d~ 107 (170)
T PF09548_consen 46 YGATPLPEALERISRR--------SEGPIGEFFERVAERLEKN--EG---ESFAEAWEEAVEKLLKESALKKEDK 107 (170)
T ss_pred HcCCCHHHHHHHHHhc--------ccchHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHhhhhcCCCCHHHH
Confidence 3445677777777654 2334677888888888654 21 2366666666666555444343333
No 67
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.78 E-value=1.5e+02 Score=28.08 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=31.9
Q ss_pred ccCC---CCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEE
Q 013070 10 VFAS---PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEI 62 (450)
Q Consensus 10 vFaS---Ps~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~ 62 (450)
||+| .+...++++++.=.-..++.+||.|... .-+.++|++.||++..
T Consensus 5 il~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-----~~~~~~A~~~gip~~~ 55 (190)
T TIGR00639 5 VLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-----AYGLERAAQAGIPTFV 55 (190)
T ss_pred EEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-----chHHHHHHHcCCCEEE
Confidence 4555 4455555555543334588899999863 2447889999999765
No 68
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=21.77 E-value=1.7e+02 Score=28.93 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=35.1
Q ss_pred eccCCccC--CC-CHHHHHHHHHhccCCCCeEEEEeeccccc--ccHHHHHHHHHhcCCc
Q 013070 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (450)
Q Consensus 5 av~G~vFa--SP-s~~~i~~ai~~v~~~~Gvl~iv~NYtGD~--lnFglA~e~a~~~G~~ 59 (450)
.++||++. +| ..+++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899986 33 34567677777776678999999995221 1122234556667764
No 69
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=20.95 E-value=89 Score=25.29 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=23.3
Q ss_pred cCCC-CeEEEEeecccccccHHHHHHHHHhcCCc
Q 013070 27 TGPM-GCLLIVTNYTGDRLNFGLAAEQAKSEGYK 59 (450)
Q Consensus 27 ~~~~-Gvl~iv~NYtGD~lnFglA~e~a~~~G~~ 59 (450)
.+-+ --++||..|--|+ |.|+|++.||+
T Consensus 42 ~grk~~r~ivVtp~id~~-----a~~~A~~LGIe 70 (70)
T PF07788_consen 42 HGRKVDRLIVVTPYIDDR-----AKEMAEELGIE 70 (70)
T ss_pred HCCCcceEEEEEeecCHH-----HHHHHHHhCCC
Confidence 3444 5789999999999 99999999985
No 70
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=20.82 E-value=1.2e+02 Score=31.27 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCCccccchhhhH
Q 013070 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAGRRGLAGTILV 89 (450)
Q Consensus 11 FaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva~~~~~~-~~gRRGlaG~v~v 89 (450)
|.-|..++|+++++....+.-+|++.+|.+.. .+..+.-|+ +.+-++.-+....-+. ..+++-+.|.+=-
T Consensus 221 f~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~-------~~~~~~~~~--~~is~d~~~dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 221 FVLPYMKRIVAELKREHPDVPVILFGKGAGEL-------LEAMAETGA--DVVGLDWTVDLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-------HHHHHhcCC--CEEeeCCCCCHHHHHHHcCCCeEEEeCCCh
Confidence 45788999999998742133477777876532 344444455 4444444443322222 2346889998843
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccc-cccccCCC
Q 013070 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL-SVCTLPGQ 132 (450)
Q Consensus 90 ~KiaGA~A~~G~~L~ev~~~~~~~~~~~~tigval-~~c~~Pg~ 132 (450)
. .- .| +-++|.+-++++.+....=|.-| ++|.+|-+
T Consensus 292 ~-----ll-~g-t~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 292 A-----VL-LA-PPEAIEEEVRAILDGGGGPGHIFNLGHGILPE 328 (346)
T ss_pred h-----Hh-cC-CHHHHHHHHHHHHHHhCCCCeeeecCCcCCCC
Confidence 2 11 23 57999999999998874333333 34766643
No 71
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.66 E-value=2.7e+02 Score=23.28 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=38.4
Q ss_pred ccCCCCHHHHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 013070 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (450)
Q Consensus 10 vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~~v~~v~v~DDva 70 (450)
++..+.......-.+.+ +.+.++|+-.++|.-...--++++|+..|+ ++|.++++-.
T Consensus 42 ~~~~~~~~~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~--~iv~iT~~~~ 98 (139)
T cd05013 42 VVLLSDPHLQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGA--KVIAITDSAN 98 (139)
T ss_pred eEEecCHHHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCC--eEEEEcCCCC
Confidence 33445555555444444 345677777799998887778899999885 5577777544
No 72
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=20.64 E-value=2.1e+02 Score=26.57 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=35.2
Q ss_pred eccCCccCCCCHH--HHHHHHHhccCCCCeEEEEeecccccccHHHHHHHHHhcCC
Q 013070 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (450)
Q Consensus 5 av~G~vFaSPs~~--~i~~ai~~v~~~~Gvl~iv~NYtGD~lnFglA~e~a~~~G~ 58 (450)
.++||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4689999876554 56666777766778999999986444333332445555554
No 73
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.51 E-value=3.8e+02 Score=27.71 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=76.9
Q ss_pred HHhhhccccccccccccCC-CCCCCCcCCC----ceEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCC
Q 013070 113 ASEMVGTMGVALSVCTLPG-QVTSDRLGPG----KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRG 187 (450)
Q Consensus 113 ~~~~~~tigval~~c~~Pg-~~~~~~l~~~----e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~ 187 (450)
+.+.++..|+-..-+.++| .+..+.|-++ |-|| ++||-.-. ++=.+++++++... +++
T Consensus 67 ~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tei-----n~~Gp~is-----~~~~~~~l~~~~~~------l~~- 129 (310)
T COG1105 67 FVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEI-----NFPGPEIS-----EAELEQFLEQLKAL------LES- 129 (310)
T ss_pred HHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEe-----cCCCCCCC-----HHHHHHHHHHHHHh------ccc-
Confidence 4455677788888888888 4555665332 3443 45553221 23345666666431 233
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEEeeeccc-cccCCCcceEEEeecc-HHHHHhhcCcCC
Q 013070 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFM-TSLDMAGFSISIMKAD-EVILKHLDATTK 261 (450)
Q Consensus 188 ~~v~vlvNnLG~ts~lEl~~~~~~~~~~L~~~~gi~v~r~~~G~~~-TSldm~GfSiTll~ld-~~l~~~ldap~~ 261 (450)
+.+ |.++ |+.|+-=-.-.|.++++.++++ |.++.---.|..+ .+|+++ -.|+|-+ +|+..++..|-.
T Consensus 130 ~d~-Vvls--GSlP~g~~~d~y~~li~~~~~~-g~~vilD~Sg~~L~~~L~~~---P~lIKPN~~EL~~~~g~~~~ 198 (310)
T COG1105 130 DDI-VVLS--GSLPPGVPPDAYAELIRILRQQ-GAKVILDTSGEALLAALEAK---PWLIKPNREELEALFGRELT 198 (310)
T ss_pred CCE-EEEe--CCCCCCCCHHHHHHHHHHHHhc-CCeEEEECChHHHHHHHccC---CcEEecCHHHHHHHhCCCCC
Confidence 344 3343 4455443446788999999888 9998876677655 577877 6777765 567777666644
No 74
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=20.48 E-value=7.3e+02 Score=23.42 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=63.7
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 013070 334 DGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALE 413 (450)
Q Consensus 334 DGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~ 413 (450)
+.|.+..+....++++..... ..-.=++.+|..+++.+... .--+..-|+.+|..+...++......+.-..+..+|.
T Consensus 51 ~~~~~~~l~~~~~~~~~~~gG-tSG~l~~~~f~~~~~~l~~~-~~~~~~~~~~al~~a~~~i~~~g~a~~GdkTmlD~l~ 128 (194)
T TIGR02365 51 DKTIGEILKNTGMTLISKVGG-ASGPLYGTAFLKASKALKDD-EILDAEDLAEILQAGLEGIQSRGKATPGEKTMVDVWA 128 (194)
T ss_pred CCCHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhHH
Confidence 467777777777777665542 11112667788888877642 1135677888998888887643224455566777777
Q ss_pred HHHHHHHHhhCCCCCCcchhhhHHHHHHHHH
Q 013070 414 ASIAAVSKYGGATAGYRTMLDALIPAAAVLQ 444 (450)
Q Consensus 414 ~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~ 444 (450)
-+.+++++.- ++.++|.-++++-+
T Consensus 129 pa~~al~~~~-------~~~~~l~~a~~aA~ 152 (194)
T TIGR02365 129 PVVEALRKAA-------DEPDALAAAREAAE 152 (194)
T ss_pred HHHHHHHHcC-------CHHHHHHHHHHHHH
Confidence 7777776532 55555655555443
No 75
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=20.30 E-value=7.8e+02 Score=23.71 Aligned_cols=107 Identities=8% Similarity=0.004 Sum_probs=70.6
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 013070 334 DGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALE 413 (450)
Q Consensus 334 DGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~ 413 (450)
+.|-+..+..-..++....-. ..-.=.+.+|..++..+... .--+..-|..+|..+...++.....++.-..+.++|.
T Consensus 58 ~~d~~~~l~~~g~~~~~~~GG-tsG~Lyg~~f~~~~~~l~~~-~~~~~~~~~~al~~~~~~i~~~G~A~~GdkTmlDaL~ 135 (210)
T PRK10005 58 DKDIGFILKNTGMTLLSSVGG-ASGPLYGTFFIRAAQATQAR-QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWV 135 (210)
T ss_pred cCCHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHcCCCCCCchhHhhHH
Confidence 458888888877777766542 11112667788888888752 1235567888888888887764445677777888888
Q ss_pred HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHh
Q 013070 414 ASIAAVSKYGGATAGYRTMLDALIPAAAVLQE 445 (450)
Q Consensus 414 ~gl~~i~~~G~A~~GDkTMlDaL~Pa~~al~~ 445 (450)
-+.+.+++.. ..| .++.++|.-++++-++
T Consensus 136 Pa~~al~~~~--~~~-~~~~~~l~~a~~aA~~ 164 (210)
T PRK10005 136 PVVESLRQSS--EQN-LSVPAALNAAVSIAES 164 (210)
T ss_pred HHHHHHHHHH--hcC-CCHHHHHHHHHHHHHH
Confidence 8888887632 222 3666667666665543
No 76
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.16 E-value=2.6e+02 Score=26.07 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 013070 357 PLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQWAEALEASIAAVSKYGGATAGYR 430 (450)
Q Consensus 357 ~~~~~~~~l~~i~~a~~~~~GGtSG~Lyg~ff~~~a~~l~~~~~~~l~~~~~a~al~~gl~~i~~~G~A~~GDk 430 (450)
....+.++|..++... .+| |+.||..++..+... +. ..+.++++.+++...+.+.=+..|+
T Consensus 48 ~~tpL~ea~~~i~~~~-------~~~-~~~~f~~~a~~L~~~--~g---~s~~eaw~~~~~~~~~~~~L~~~d~ 108 (171)
T PRK08307 48 GHTPLPEALENIAKQS-------PKP-ISTLFQRFSERLESG--EG---ETAYEAWEKALEENWKNTALKKEDI 108 (171)
T ss_pred cCCcHHHHHHHHHHcc-------chh-HHHHHHHHHHHHHhC--CC---CCHHHHHHHHHHHhhhccCCCHHHH
Confidence 3455666666665322 223 788888888888654 11 2356666666666555444444443
Done!