BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013071
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0E|A Chain A, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
pdb|4F0E|B Chain B, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
pdb|4F0E|C Chain C, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
pdb|4F0E|D Chain D, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC
DOMAIN IN Complex With Sto1102
Length = 200
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
S I ++R +A L +++ ++Q++I N + N R + T ++ + +G
Sbjct: 40 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 97
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
A +YG G + A + +Y+ D NG +HM + RV+ G + P
Sbjct: 98 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 157
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
K H ++ FDS ++ ++P+ ++V+ + +PE++++F
Sbjct: 158 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 198
>pdb|3BLJ|A Chain A, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15,
Catalytic Fragment
pdb|3BLJ|B Chain B, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15,
Catalytic Fragment
pdb|3GEY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
pdb|3GEY|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
pdb|3GEY|C Chain C, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
pdb|3GEY|D Chain D, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 15,
Catalytic Fragment In Complex With An Inhibitor Pj34
Length = 221
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
S I ++R +A L +++ ++Q++I N + N R + T ++ + +G
Sbjct: 61 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 118
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
A +YG G + A + +Y+ D NG +HM + RV+ G + P
Sbjct: 119 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 178
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
K H ++ FDS ++ ++P+ ++V+ + +PE++++F
Sbjct: 179 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 219
>pdb|3GOY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|C Chain C, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3GOY|D Chain D, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14,
Catalytic Fragment In Complex With An Inhibitor
3-Aminobenzamide
pdb|3SE2|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|C Chain C, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SE2|D Chain D, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With 6(5h)-Phenanthridinone
pdb|3SMI|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMI|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Quinazoline Inhibitor
pdb|3SMJ|A Chain A, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|3SMJ|B Chain B, Human Poly(Adp-Ribose) Polymerase 14 (Parp14ARTD8) -
Catalytic Domain In Complex With A Pyrimidine-Like
Inhibitor
pdb|4F1L|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|C Chain C, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1L|D Chain D, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With Inhibitor A16(Z)
pdb|4F1Q|A Chain A, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
pdb|4F1Q|B Chain B, Human Artd8 (Parp14, Bal2) - Catalytic Domain In Complex
With A16(E)
Length = 193
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 10/165 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
S I ++R + L ++ +K ++ N N + + T G++ + G
Sbjct: 33 SHFRIEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFN 90
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFP 239
A YG G + A + + +Y+ D NG +H+ RV+ GN + P
Sbjct: 91 RSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVP 150
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
+K ++ +D+ D++ +P ++ + + +PE++++F+
Sbjct: 151 PSKNPQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 192
>pdb|3HKV|A Chain A, Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzamide
pdb|3HKV|B Chain B, Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzamide
Length = 217
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
S + ++ V+R S L ++EL++++L +C + + T+ A+ + +G
Sbjct: 39 SSIRVVRVERVSHPLLQQQYELYRERL--LQRCERRPVEQVLYHGTTAPAVPDICAHGFN 96
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQF 244
+ YG GV+ A + Y+ + +G + + + RV+ G+ G +
Sbjct: 97 RSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLR-- 154
Query: 245 HPSSEDFDSGVDDLQNPRHYIV-WNMNMNTHIFPEFVVSFKFSSNVEGHLIRSE 297
L+ P H ++ ++ M+ P V F + + HLI E
Sbjct: 155 ----------APPLRGPGHVLLRYDSAMDCICQPSIFVIFHDTQALPTHLITCE 198
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 366 ISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQC 417
+S S K++E I ++ +FR + + +D K+LR I ++ L T LQ
Sbjct: 145 LSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQA 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,617,834
Number of Sequences: 62578
Number of extensions: 428790
Number of successful extensions: 895
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 5
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)