BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013071
(450 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana
GN=RCD1 PE=1 SV=1
Length = 589
Score = 341 bits (874), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 196/413 (47%), Positives = 253/413 (61%), Gaps = 30/413 (7%)
Query: 25 NIKLQLEIDIAGLDQSKL--KECSGES-NAFIKQIQIAPKPASNKYVVEVEDSCNRKPDA 81
+IKL+LEID+ G + +L +ECS ES + + + +A + ++ Y EDSC+RK +A
Sbjct: 190 DIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDSCSRKLEA 249
Query: 82 ---KLDETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSA 138
K DET + + + LD D+V+ MF +G + V +LDV R SS
Sbjct: 250 AVSKWDETDA------IVVSGAKLTGSEVLDKDAVKKMFAVGTASLGHVPVLDVGRFSSE 303
Query: 139 SLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIG 198
AR LFQKQ+EIT K RGDANVRYAWL + LS ++M GLG GA KS YG+G
Sbjct: 304 IAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLGVGGAFIRKSIYGVG 363
Query: 199 VHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDL 258
+HL AA CP SA Y DVDENGVR+MVLCRVIMGNME L QF E++D+GVDD+
Sbjct: 364 IHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDI 423
Query: 259 QNPRHYIVWNMNMNTHIFPEFVVSFKFSS--NVEGHLIRSESQRAISVLTTSSQGLQGHL 316
++P++YIVWN+NMNTHIFPEFVV FK S+ N EG+LI ++
Sbjct: 424 ESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVT------------- 470
Query: 317 RLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVME 376
L+ D + GS G A S SST R PKSPWMPFP LFA+IS+KV+ M
Sbjct: 471 -LEGPKDLPPQLESNQGARGS-GSANSVGSSTTR-PKSPWMPFPTLFAAISHKVAENDML 527
Query: 377 QISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPSKREVGEVK 429
I+ Y+ R KK+ R +FV+KLR+IVGDDLLRSTIT LQ + SK G ++
Sbjct: 528 LINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQPKSKEIPGSIR 580
>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis
thaliana GN=SRO1 PE=1 SV=2
Length = 568
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 240/396 (60%), Gaps = 25/396 (6%)
Query: 26 IKLQLEIDI--AGLDQSKLKECSGESNAFIKQIQIAPKPASNKYVVEVEDSCNRKPDAKL 83
IKL +EID+ L + L + ES + Q + ++ EDSC+R+ L
Sbjct: 189 IKLHIEIDVNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDEASEDSCSRE----L 244
Query: 84 DETTGQNQNTKTSLVNKSVVVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSASLLAR 143
D+ + T+T + +++LD D+V+ MF +G + V+ LDV + SS AR
Sbjct: 245 DDAVEKWDKTETDRFSGVKPAEEELDKDAVKQMFALGAATLGHVESLDVYQFSSEIAKAR 304
Query: 144 FELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA 203
LFQKQ +IT K RGDAN+RYAW+ K LS ++M+GLG GA KS YG+GVH A
Sbjct: 305 LSLFQKQADITKKHRGDANIRYAWVPAKKEVLSAVMMHGLGVGGAFIKKSMYGVGVH--A 362
Query: 204 ASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRH 263
A+CP SA Y D+D+NGVRHMVLCRVIMGNMEPL Q+ E++D+GVDD+++P+H
Sbjct: 363 ANCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKH 422
Query: 264 YIVWNMNMNTHIFPEFVVSFKFS-SNVEGHLI-RSESQRAISVLTTSSQGLQGHLRLDSS 321
Y++WNMNMNTHI+PEFVVSFK S N EG+++ ++S+ S LT +G +G S
Sbjct: 423 YLIWNMNMNTHIYPEFVVSFKLSIPNAEGNILPTTQSRHESSGLTL--EGPKG----SPS 476
Query: 322 ADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQ 381
+ G VS+ S S + + S MPFP+LF +IS+K++ K M+ I
Sbjct: 477 NEPGRVSNGGSGSEKNSSSSRRPRSPI--------MPFPLLFKAISSKIARKDMDLIIAG 528
Query: 382 YELFRAKKVNRDDFVKKLRLIVG-DDLLRSTITALQ 416
Y+ R KKV+R +F K L +IVG DDLL STIT LQ
Sbjct: 529 YQELREKKVSRKEFYKTLSMIVGDDDLLISTITGLQ 564
>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis
thaliana GN=SRO2 PE=1 SV=1
Length = 323
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 155/315 (49%), Gaps = 67/315 (21%)
Query: 109 DSDSVRSMFLMGMSP-SSGVDILDVQRCSS-------ASLLARFELFQKQLEITNKCRGD 160
+ D +++ L GM SS I+ + + SS A LA F +F + K GD
Sbjct: 54 EHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLA-FRIFTDA--VARKHGGD 110
Query: 161 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVD 217
ANV+Y W A S+ + +I YG + ++ ++GIG+HL + C +AS T+ D
Sbjct: 111 ANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQD 170
Query: 218 ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFP 277
E G+R+++LCRVI+G E + G+KQ +PSS +FDSGVDDL NPR+Y++W+ NMN+ I P
Sbjct: 171 EEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILP 230
Query: 278 EFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGS 337
++VSF RS R S+G G S P S
Sbjct: 231 SYIVSF-----------RSPRLRV-------SRG-------------GFASRPSS----- 254
Query: 338 QGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVK 397
PW+ F L + +S + P M I Y+ FR +K+ RD V+
Sbjct: 255 -----------------PWVSFASLMSMLSTSMDPSRMNLIIRTYDDFRKRKIRRDQLVR 297
Query: 398 KLRLIVGDDLLRSTI 412
K+R + GD+LL I
Sbjct: 298 KMREVAGDNLLAEII 312
>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis
thaliana GN=SRO3 PE=1 SV=2
Length = 305
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 154/309 (49%), Gaps = 65/309 (21%)
Query: 108 LDSDSVRSMFLMGM-SPSSGVDILDVQRCSSASLL---ARFELFQKQLE-ITNKCRGDAN 162
+ + +++ FL GM S ++ I+ V++ + L+ A+F +F+ E + K G AN
Sbjct: 45 FEHNLIKNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYAN 104
Query: 163 VRYAWLATSKGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDEN 219
+RY W + SK + +I YG + ++ ++G+G+HL +A + DE
Sbjct: 105 IRYGWYSGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEE 164
Query: 220 GVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEF 279
G+++++LCRVI+G E + G+KQ +PSS FDSGVD+L+NPR Y++W+ NMN++I P +
Sbjct: 165 GIKNILLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTY 224
Query: 280 VVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQG 339
+VSFK HL+R GL G R
Sbjct: 225 IVSFK------SHLLR---------------GLIGRAR---------------------- 241
Query: 340 KAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKL 399
SP + F +L + +S + M I Y+ FR +K+ R+ V+K+
Sbjct: 242 --------------SPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLVRKI 287
Query: 400 RLIVGDDLL 408
R +VGD+LL
Sbjct: 288 REVVGDNLL 296
>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis
thaliana GN=SRO5 PE=1 SV=1
Length = 309
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 59/284 (20%)
Query: 137 SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG 196
S + L F++FQ+ +++ + G A V+Y W + SK L T+ YG ++G
Sbjct: 82 SRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFSE--PLRNDGSFG 139
Query: 197 IGVHLAAASCP-DTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGV 255
G++L+ + P D E+G+R ++LCRV++G E + G+ + PSS +FDSGV
Sbjct: 140 RGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGV 199
Query: 256 DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGH 315
DDL + + YIVW+ +MNTH+ PEF+V K N LT S + L+
Sbjct: 200 DDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFN----------------LTRSPKRLR-- 241
Query: 316 LRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVM 375
SPWM FP+L ++S + P +
Sbjct: 242 --------------------------------------SPWMAFPVLIKALSKFLPPSQI 263
Query: 376 EQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKI 419
I Y+ + +++ R + ++++R I GD LL I A K+
Sbjct: 264 LVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKACGHKV 307
>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis
thaliana GN=SRO4 PE=2 SV=2
Length = 316
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 161 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENG 220
A V+Y K L ++MYG + + + + D S+S +E+G
Sbjct: 122 ARVKYGCCGVEKEELKAILMYGFSNNALCLSPDNAPLQCMI------DPSSS---CNEDG 172
Query: 221 VRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFV 280
+ ++ R+IMG E + T Q +PSS +FDSGVD L +P YI+W+ +MNTH+ PEFV
Sbjct: 173 ISFLLFSRIIMGKSE-VVCSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFV 231
Query: 281 VSFK 284
V K
Sbjct: 232 VCIK 235
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 350 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLR 409
+ PKSPW+ FP+L SIS ++ + I Y+ + ++++R + +++LR I GD LL
Sbjct: 243 KNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITGDSLLV 302
Query: 410 STITALQCKI 419
I ++ K+
Sbjct: 303 QIIKSVGQKV 312
>sp|Q460N3|PAR15_HUMAN Poly [ADP-ribose] polymerase 15 OS=Homo sapiens GN=PARP15 PE=1 SV=1
Length = 656
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 125 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 184
S I ++R +A L +++ ++Q++I N + N R + T ++ + +G
Sbjct: 496 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 553
Query: 185 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 239
A +YG G + A + +Y+ D NG +HM + RV+ G + P
Sbjct: 554 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 613
Query: 240 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 283
K H ++ FDS ++ ++P+ ++V+ + +PE++++F
Sbjct: 614 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 654
>sp|Q2EMV9|PAR14_MOUSE Poly [ADP-ribose] polymerase 14 OS=Mus musculus GN=Parp14 PE=1 SV=3
Length = 1817
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 129 ILDVQRCSSASLLARFELFQKQLEITNKCRGDA-NVRYAWLATSKGALSTMIMYGLGHCG 187
I ++R + +L R++ ++K ++ N G+ N ++ + T +L + G
Sbjct: 1661 IEKIERIQNPALWRRYQAYKKSMDEKN---GNVRNEKHLFHGTEASSLPQLNSNGFNRSY 1717
Query: 188 ASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTK 242
A + YG G + A + +Y+ D NG ++M RV+ GN + P ++
Sbjct: 1718 AGKNATAYGKGTYFAVKASYSACDTYSRPDTNGRKYMYYVRVLTGNYTNGNASLIVPPSR 1777
Query: 243 QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
+++ +D+ D+ +NP ++V+ N +PE++++F+
Sbjct: 1778 DPQNAADLYDTVTDNDKNPSIFVVFYDN---QTYPEYLITFR 1816
>sp|Q54YW4|Y8045_DICDI Probable poly [ADP-ribose] polymerase DDB_G0278045 OS=Dictyostelium
discoideum GN=DDB_G0278045 PE=4 SV=3
Length = 337
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 21/168 (12%)
Query: 124 SSGVDILDVQRCSSASLLARFELFQKQL----EITNKCRGDANVRYAWLATS-KGALSTM 178
S+ +I+ ++R + SL F+ +K+L +++N ++ + + A K S+
Sbjct: 58 SNSFEIIKIERIQNKSLWRNFDESRKRLNEKYQVSNLDFLESTLFHGTRANDPKLIFSSK 117
Query: 179 IMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLF 238
+ + +G ++ YGIG++ A + + S+ + +G + M LCRV++GN P
Sbjct: 118 VGFDIG----KSSFGNYGIGLYFALNASYSNNYSFEESPTSGCKQMFLCRVLLGNSAP-- 171
Query: 239 PGTKQFHPSSEDFDSGVDDLQNP--RHYIVWNMNMNTHIFPEFVVSFK 284
P K+ DS D ++ P +I + N +P++++S++
Sbjct: 172 PTQKELKN-----DSTQDSIKGPGGEMFI---LKSNHTAYPDYLISYR 211
>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=3
Length = 1801
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 129 ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 188
I ++R + L ++ +K ++ N N + + T G++ + G A
Sbjct: 1645 IEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFNRSYA 1702
Query: 189 STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFPGTKQ 243
YG G + A + + +Y+ D NG +H+ RV+ GN + P +K
Sbjct: 1703 GKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKN 1762
Query: 244 FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 284
++ +D+ D++ +P ++ + + +PE++++F+
Sbjct: 1763 PQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 1800
>sp|Q8C1B2|PARPT_MOUSE TCDD-inducible poly [ADP-ribose] polymerase OS=Mus musculus
GN=Tiparp PE=2 SV=1
Length = 657
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 123 PSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD---ANVRYAWLATSKGALSTMI 179
P IL + R + L +++ +K+ + K G N R+ + TS+ + +
Sbjct: 486 PEFKYRILQILRVQNQFLWEKYK--RKKEYMNRKMSGRDRIINERHLFHGTSQDVVDGIC 543
Query: 180 MYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME-- 235
+ CG T +G G + A + S +++ GV M L +V+ G
Sbjct: 544 KHNFDPRVCGKHAT--MFGQGSYFAKKA--SYSHNFSKKSSKGVHFMFLAKVLTGRYTMG 599
Query: 236 --------PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 287
P+ PG+ +S+ +DS VD+ P+ ++++N + + +P FV+ ++ S
Sbjct: 600 SHGMRRPPPVNPGSV----TSDLYDSCVDNFFEPQIFVIFNDDQS---YPYFVIQYEEVS 652
Query: 288 NV 289
N
Sbjct: 653 NT 654
>sp|Q8CFF0|PAR11_MOUSE Poly [ADP-ribose] polymerase 11 OS=Mus musculus GN=Parp11 PE=2 SV=1
Length = 331
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 222 RHMVLCRVIMGNMEPLFPGTKQFHPSSED------FDSGVDDLQNPRHYIVWNMNMNTHI 275
+ M L RV++G+ + +K P S+D +DS VDD NP+ ++V++ N I
Sbjct: 268 KSMFLARVLIGDY--INGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDAN---QI 322
Query: 276 FPEFVVSF 283
+PE+++ F
Sbjct: 323 YPEYLIDF 330
>sp|Q9NR21|PAR11_HUMAN Poly [ADP-ribose] polymerase 11 OS=Homo sapiens GN=PARP11 PE=1 SV=1
Length = 331
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 11/66 (16%)
Query: 224 MVLCRVIMGNMEPLFPGTKQFHPSSED------FDSGVDDLQNPRHYIVWNMNMNTHIFP 277
M L RV++G+ + +K P S+D +DS VDD NP+ ++V++ N I+P
Sbjct: 270 MFLARVLIGDY--INGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDAN---QIYP 324
Query: 278 EFVVSF 283
E+++ F
Sbjct: 325 EYLIDF 330
>sp|Q53GL7|PAR10_HUMAN Poly [ADP-ribose] polymerase 10 OS=Homo sapiens GN=PARP10 PE=1 SV=2
Length = 1025
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 111 DSVRSMFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLAT 170
+ VR+ + + S + ++ V+R S L ++EL++++L +C + + T
Sbjct: 832 EVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERL--LQRCERRPVEQVLYHGT 889
Query: 171 SKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVI 230
+ A+ + +G + YG GV+ A + Y+ + +G + + + RV+
Sbjct: 890 TAPAVPDICAHGFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVL 949
Query: 231 MGNM---------EPL-FPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFV 280
G+ PL PG +DS VD + P +++++ +T P +
Sbjct: 950 TGDYGQGRRGLRAPPLRGPGHVLLR-----YDSAVDCICQPSIFVIFH---DTQALPTHL 1001
Query: 281 VS 282
++
Sbjct: 1002 IT 1003
>sp|Q7Z3E1|PARPT_HUMAN TCDD-inducible poly [ADP-ribose] polymerase OS=Homo sapiens
GN=TIPARP PE=2 SV=1
Length = 657
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 123 PSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD---ANVRYAWLATSKGALSTMI 179
P IL + R + L +++ +K+ + K G N R+ + TS+ + +
Sbjct: 486 PEFKYRILQILRVQNQFLWEKYK--RKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGIC 543
Query: 180 MYGLGH--CGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME-- 235
+ CG T +G G + A + S +++ GV M L +V+ G
Sbjct: 544 KHNFDPRVCGKHAT--MFGQGSYFAKKA--SYSHNFSKKSSKGVHFMFLAKVLTGRYTMG 599
Query: 236 --------PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 287
P+ PG+ +S+ +DS VD+ P+ ++++N + + +P FV+ ++ S
Sbjct: 600 SHGMRRPPPVNPGSV----TSDLYDSCVDNFFEPQIFVIFNDDQS---YPYFVIQYEEVS 652
Query: 288 NV 289
N
Sbjct: 653 NT 654
>sp|Q60216|TRAN4_ECOLX Protein TraN OS=Escherichia coli GN=traN PE=4 SV=2
Length = 448
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 346 SSTPRAPKSPWMPFPML-----FASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLR 400
SS RA ++PW FP + S++N+ + +Q + L +++ DD V +L+
Sbjct: 2 SSYSRAERAPWGDFPKVVRNGDLGSLTNEPEYQAAKQGDAEAALNLVERLISDDTVAQLK 61
Query: 401 LIVGDD 406
++GDD
Sbjct: 62 TLIGDD 67
>sp|Q9CK91|RPOB_PASMU DNA-directed RNA polymerase subunit beta OS=Pasteurella multocida
(strain Pm70) GN=rpoB PE=3 SV=1
Length = 1342
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 362 LFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKIPS 421
L S+S++ +EQ++ QYE R K+ R V++ ++I GDDL + ++ +
Sbjct: 999 LEQSLSDEAQQNQLEQLAEQYEELR-KEFERKLEVQRGKIIQGDDLAPGVLKVVKVYLAV 1057
Query: 422 KREV 425
KR++
Sbjct: 1058 KRQI 1061
>sp|Q43857|INVA_VICFA Acid beta-fructofuranosidase OS=Vicia faba GN=VCINV PE=2 SV=1
Length = 642
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 82 KLDETTGQNQNTKTSLVNKSV--VVDDKLDSDSVRSMFLMGMSPSSGVDILDVQRCSSAS 139
KLD+ TG N L+ V V +L SD +++ + P + V + D++ +
Sbjct: 417 KLDKKTGSN------LLQWPVAEVESLRLRSDEFQNL---KVKPGAVVSV-DIETATQLD 466
Query: 140 LLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTY---- 195
++A FE+ ++ LE T + + + A+ +GAL +Y L G S Y
Sbjct: 467 IVAEFEIDKEALEKTAQSNVEYECNTSGGASRRGALGPFGLYVLADNGLSEYTPVYFYVV 526
Query: 196 -GIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTK 242
GI L + C D S S D + + I G++ P+ G K
Sbjct: 527 KGINGKLHTSFCSDQSRSSLAND--------VHKQIYGSVVPVLEGEK 566
>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2
Length = 4293
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 151 LEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTS 210
L++ R N+ Y+W A +G+L T ++G G C + T+ VHL A + ++
Sbjct: 1646 LQLQAAVRDGTNISYSWTAQQEGSLIT--LFGSGKCFSLTSLKASTYYVHLRATNMLGSA 1703
Query: 211 ASYTDVD 217
A+ +D
Sbjct: 1704 AANRTID 1710
>sp|Q9V2G4|RFCS_PYRAB Replication factor C small subunit OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rfcS PE=1 SV=1
Length = 1437
Score = 33.1 bits (74), Expect = 4.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 371 SPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQ 416
S K++E I ++ +FR + +N +D K+LR I ++ L T LQ
Sbjct: 1259 SSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQ 1304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,344,116
Number of Sequences: 539616
Number of extensions: 6560078
Number of successful extensions: 18461
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 18423
Number of HSP's gapped (non-prelim): 42
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)