BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013073
         (450 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q61282|PGCA_MOUSE Aggrecan core protein OS=Mus musculus GN=Acan PE=1 SV=2
          Length = 2132

 Score = 41.2 bits (95), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 20/195 (10%)

Query: 254  VPTAMDDDQYVEYQLDDLAGFPSNVEEEERMFMEAVIMSLKDLEMRHPEVEQPTSVAADS 313
            +PT  +  +     ++D++G PS      R  +E     ++D+ +   E E   + A+  
Sbjct: 1051 LPTGRESLETSASGVEDVSGLPSG-----REGLETSASGIEDISVFPTEAEGLDTSASGG 1105

Query: 314  F----KSSGQGATNDCSTTDHCK--PSESE---TSSSSIEQLRPIYTES--TSTSLVNSR 362
            +     S G G     S  +     PS  E   TS+S +E L P   +S  TS S V+  
Sbjct: 1106 YVSGIPSGGDGTETSASGVEDVSGLPSGGEGLETSASGVEDLGPSTRDSLETSASGVDVT 1165

Query: 363  NLAPQHPSPDTSVSSVGDAFDTPPSSVESASTGTSARTDTSATASTQSSADADVSSNTKA 422
                    P+TSVS VGD F   PS  E   T  S   D S   S +     D+  +   
Sbjct: 1166 GFPSGRGDPETSVSGVGDDFSGLPSGKEGLETSASGAEDLSGLPSGKE----DLVGSASG 1221

Query: 423  TVTVVKNPAGHVMEG 437
             +   K P G +  G
Sbjct: 1222 ALDFGKLPPGTLGSG 1236


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,820,145
Number of Sequences: 539616
Number of extensions: 6811949
Number of successful extensions: 23639
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 19470
Number of HSP's gapped (non-prelim): 2706
length of query: 450
length of database: 191,569,459
effective HSP length: 121
effective length of query: 329
effective length of database: 126,275,923
effective search space: 41544778667
effective search space used: 41544778667
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)