BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013075
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 206/478 (43%), Gaps = 71/478 (14%)
Query: 6 HGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLR-ATVYGALI 64
HG+ Q PWADG ++QC I PG ++ Y FT+ D GT ++H H R A +YG+LI
Sbjct: 62 HGILQRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLI 120
Query: 65 VYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAP---------------- 108
V P G PF EI +L+ +WW + + +Q + P
Sbjct: 121 VDPPQGKKEPFHY-DGEINLLLSDWWHQS---IHKQEVGLSSKPIRWIGEPQTILLNGRG 176
Query: 109 ----NISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKL 164
+I+ N +P L S F V +T +RI ++ F + NH+L
Sbjct: 177 QFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQL 236
Query: 165 TVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARXXXXXXXXXXXXXXXXXXXXXX 224
VV D +Y +PF TS I I G++ +VL+T DQ P+
Sbjct: 237 LVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSE--NYWVSVGTRARHPNTPPGLT 294
Query: 225 ILEYKSAPFNGKKGKSRSSAPIFPILPGFNDXXXXXXXXXRI-KSLHQVQVPTVIDENLF 283
+L Y K +S P P P ++D RI ++ + P + +F
Sbjct: 295 LLNY----LPNSVSKLPTSPP--PQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRIF 348
Query: 284 FTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFP-------RRNSLMQAYIQG-QP 335
+IN +IN++S P + +L+ A+ Q P
Sbjct: 349 LLNTQNVIN--------------GYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPP 394
Query: 336 GIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVS---VED 392
+F D+ P + T R +Y+ K G V ++ Q+ +++ E
Sbjct: 395 EVFPEDYDIDTPPTNEKT----------RIGNGVYQFKIGEVVDVILQNANMMKENLSET 444
Query: 393 HPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450
HP HLHGH+F+V+G G G F+ + + + NL +PP RNT+ P GW A+RFVA+NPG
Sbjct: 445 HPWHLHGHDFWVLGYGDGKFS-AEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPG 501
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 110/454 (24%), Positives = 172/454 (37%), Gaps = 74/454 (16%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q DGP +V QCPI P S+ Y F + Q GT W+H+H S +
Sbjct: 83 SIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLR 142
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALF--TGGAPNISDALTIN 117
GA +VY P + + I I +W+ L LF AP D IN
Sbjct: 143 GAFVVYDPNDPHLSLYDVDDASTVITIADWYHS-----LSTVLFPNPNKAPPAPDTTLIN 197
Query: 118 GQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPF 177
G + S+ + V++G+ RI++++ + F + H++TV+ VD +P
Sbjct: 198 GLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPL 257
Query: 178 PTSVIMIAPGQTTNVLLTADQPPARXXXXXXXXXXXXXXXXXXXXXXILEYKSAPFNGKK 237
+ I GQ +V++ A+Q ++ P NG+
Sbjct: 258 TVDSLTIFAGQRYSVVVEANQAVGN-----------------------YWIRANPSNGRN 294
Query: 238 GKSRSSAPIFPILPGFNDXXXXXXXXXRIKSLHQVQVPTVIDENLFFTVGLGLINCSNPN 297
G + G N + T ++E LI NP
Sbjct: 295 GFTG----------GINSAIFRYQGAAVAEPTTSQNSGTALNE-------ANLIPLINPG 337
Query: 298 SPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVS 357
+P P G N++ R + I G P I PP P++ +
Sbjct: 338 APGNPVPGGADI-----NLNLRIGRNATTADFTINGAPFI-----PPTVPVLL----QIL 383
Query: 358 RGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTD 417
G+ P + Q++ + SI +HP HLHGH F VV +
Sbjct: 384 SGVTNPNDLLPGGAVISLPANQVI--EISIPGGGNHPFHLHGHNFDVV--------RTPG 433
Query: 418 TAKFNLIDPPRRNTIGTPPGG-WVAVRFVAENPG 450
++ +N ++P RR+ + GG V RFV +NPG
Sbjct: 434 SSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPG 467
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++ QCPI PG S+ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + + I + +W+ R F GGA DA ING+
Sbjct: 122 GPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKLGPR---FPGGA----DATLINGK 174
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G S E V G+ R+++ + N H F + H LT++ VD+ ++P
Sbjct: 175 -GRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEV 233
Query: 180 SVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 234 DSIQIFAAQRYSFVLDANQ 252
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
+Y L + ++I F T+ HP HLHGH F VV S + +N +P
Sbjct: 370 SVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYDNPI 421
Query: 428 RRNTI--GTPPGG-WVAVRFVAENPG 450
R+ + GTP G V +RF NPG
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFDTNNPG 447
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++ QCPI PG S+ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + + I + +W+ R F GGA DA ING+
Sbjct: 122 GPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKLGPR---FPGGA----DATLINGK 174
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G S E V G+ R+++ + N H F + H LT++ VD+ ++P
Sbjct: 175 -GRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEV 233
Query: 180 SVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 234 DSIQIFAAQRYSFVLDANQ 252
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
+Y L + ++I F T+ HP HLHGH F VV S + +N +P
Sbjct: 370 SVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYDNPI 421
Query: 428 RRNTI--GTPPGG-WVAVRFVAENPG 450
R+ + GTP G V +RF NPG
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFDTNNPG 447
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++ QCPI PG S+ Y F + +Q GT W+H+H S +
Sbjct: 62 SVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + + I + +W+ R F GA DA ING+
Sbjct: 122 GPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKLGPR---FPAGA----DATLINGK 174
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G +S E V G+ R+++ + + F + H LT++ VD+S ++P
Sbjct: 175 -GRAPSDTSAELSVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSV 233
Query: 180 SVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 234 DSIQIFAAQRYSFVLNANQ 252
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 372 LKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNT 431
L + ++I F T+ HP HLHGH F VV S + +N +P R+
Sbjct: 374 LPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA--------GSTVYNYSNPIFRDV 425
Query: 432 I--GTPPGG-WVAVRFVAENPG 450
+ GTP G V +RF+ NPG
Sbjct: 426 VSTGTPAAGDNVTIRFLTNNPG 447
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP +V QCPI G S+ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + + I + +W+ A P SD+ ING
Sbjct: 122 GPFVVYDPNDPHASLYDIDNDDTVITLADWYH-------VAAKLGPRFPFGSDSTLINGL 174
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G + + V G+ R+++ + + H F + NH +T++ D+ T+P
Sbjct: 175 -GRTTGIAPSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEV 233
Query: 180 SVIMIAPGQTTNVLLTADQP 199
I I Q + +L A QP
Sbjct: 234 DSIQIFAAQRYSFVLDASQP 253
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
++ L S ++I F T+ HP HLHGH F VV S ++ +N +P
Sbjct: 370 SVFVLPSNSSIEISFPATANAPGFPHPFHLHGHAFAVVRSA--------GSSVYNYDNPI 421
Query: 428 RRNTIGT-PPGGWVAVRFVAENPG 450
R+ + T PG V +RF NPG
Sbjct: 422 FRDVVSTGQPGDNVTIRFETNNPG 445
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 11/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP +V QCPI G ++ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G ++VY P+ + + I + +W+ A G +DA ING
Sbjct: 122 GPIVVYDPQDPHKSLYDVDDDSTVITLADWY--------HLAAKVGSPVPTADATLINGL 173
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G + + V G+ R+++ + + H F + H LTV+ D+ KP
Sbjct: 174 -GRSIDTLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTV 232
Query: 180 SVIMIAPGQTTNVLLTADQ 198
I I Q + +L ADQ
Sbjct: 233 DSIQIFAAQRYSFVLNADQ 251
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
+Y L + ++I T+ HP HLHGH F VV S ++ +N +P
Sbjct: 369 SVYSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVVRSA--------GSSTYNYENPV 420
Query: 428 RRNTIGT-PPGGWVAVRFVAENPG 450
R+ + T PG V +RF +NPG
Sbjct: 421 YRDVVSTGSPGDNVTIRFRTDNPG 444
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 10/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++ QCPI PG S+ Y F + +Q GT W+H+H S +
Sbjct: 62 SVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + + I + +W+ A PN +D+ ING+
Sbjct: 122 GPFVVYDPNDPHASRYDVDNDDTTITLADWYH-------TAAKLGPAFPNGADSTLINGK 174
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G SS + V G+ R+++ + + F + H T++ D+ ++P T
Sbjct: 175 -GRAPSDSSAQLSVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNT 233
Query: 180 SVIMIAPGQTTNVLLTADQ 198
I I Q + L A+Q
Sbjct: 234 DSIQIFAAQRYSFTLNANQ 252
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
+ L + ++I F T+ HP HLHGH F VV S + +N +P
Sbjct: 370 SVXTLPSNASIEISFPATAAAPGAPHPFHLHGHVFAVVRSA--------GSTVYNYSNPI 421
Query: 428 RRNTI--GTPPGG-WVAVRFVAENPG 450
R+ + GTP G V +RF+ NPG
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFLTNNPG 447
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 11/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP +V QCPI G ++ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G ++VY P + + I + +W+ A G +DA ING
Sbjct: 122 GPIVVYDPNDPHASLYDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLINGL 173
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G + + V G+ R+++ + + + F + H LTV+ D+ KP
Sbjct: 174 -GRSAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTV 232
Query: 180 SVIMIAPGQTTNVLLTADQ 198
+ I Q + +L ADQ
Sbjct: 233 DSLQIFAAQRYSFVLNADQ 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 343 PPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEF 402
P VP ++ +G S P +Y L + ++I T+ HP HLHGH F
Sbjct: 346 PTVPVLLQILSGAQSAADLLPAG--SVYSLPANADIEISLPATAAAPGFPHPFHLHGHVF 403
Query: 403 YVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGT-PPGGWVAVRFVAENPG 450
VV S ++ +N +P R+ + T PG V +RF +NPG
Sbjct: 404 AVVRSA--------GSSTYNYANPVYRDVVSTGAPGDNVTIRFRTDNPG 444
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 11/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP +V QCPI G ++ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G ++VY P + + I + +W+ A G +DA ING
Sbjct: 122 GPIVVYDPNDPHASLYDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLINGL 173
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G + + V G+ R+++ + + + F + H LTV+ D+ KP
Sbjct: 174 -GRSAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTV 232
Query: 180 SVIMIAPGQTTNVLLTADQ 198
+ I Q + +L ADQ
Sbjct: 233 DSLQIFAAQRYSFVLNADQ 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 343 PPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEF 402
P VP ++ +G S P +Y L + ++I T+ HP HLHGH F
Sbjct: 346 PTVPVLLQILSGAQSAADLLPAG--SVYSLPANADIEISLPATAAAPGFPHPFHLHGHVF 403
Query: 403 YVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGT-PPGGWVAVRFVAENPG 450
VV S ++ +N +P R+ + T PG V +RF +NPG
Sbjct: 404 AVVRSA--------GSSTYNYANPVYRDVVSTGAPGDNVTIRFRTDNPG 444
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 16/202 (7%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP +V QCPI G S+ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P+ + + I + +W+ A P +DA ING
Sbjct: 122 GPFVVYDPKDPHASRYDVDNESTVITLTDWYH-------TAARLGPRFPLGADATLING- 173
Query: 120 PGDLYRCSSKETVRFP---VEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKP 176
L R +S T V+ G+ R+++ + + + F + H LTV+ VD ++P
Sbjct: 174 ---LGRSASTPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQP 230
Query: 177 FPTSVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 231 LLVDSIQIFAAQRYSFVLNANQ 252
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
+Y L S ++I T++ HP HLHGH F VV S + +N DP
Sbjct: 370 SVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSA--------GSTTYNYNDPI 421
Query: 428 RRNTI--GTPPGG-WVAVRFVAENPG 450
R+ + GTP G V +RF +NPG
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFQTDNPG 447
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 12/200 (6%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP +V QCPI G S+ Y F+ Q GT W+H+H S
Sbjct: 62 SVHWHGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGA-PNISDALTING 118
G +VY P S + + I + +W+ A G A P +DA ING
Sbjct: 122 GPFVVYDPNDPSANLYDVDNLNTVITLTDWY--------HTAAQNGPAKPGGADATLING 173
Query: 119 QPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFP 178
Q G S + V AG+ R+++++ + + F + H++T++ VD+ +P
Sbjct: 174 Q-GRGPSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLV 232
Query: 179 TSVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 233 VLKIQIYAAQRYSFILNANQ 252
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 369 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPR 428
+Y L + ++I F TS + HP HLHGH F VV S + +N DP
Sbjct: 371 VYSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVVRSA--------GSTTYNYNDPIF 422
Query: 429 RNTI--GTPPGG-WVAVRFVAENPG 450
R+T+ GTP V +RF NPG
Sbjct: 423 RDTVSTGTPAANDNVTIRFKTNNPG 447
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 12/196 (6%)
Query: 6 HGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVYGALI 64
HG+ Q WADGP +V QCPI G S+ Y FT+ DQ GT W+H+H S + G L+
Sbjct: 66 HGLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLV 125
Query: 65 VYPRMGSPYP--FPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGD 122
VY PY + + I + +W+ A P +D++ ING G
Sbjct: 126 VY-DPSDPYASMYDVDDDTTVITLSDWYH-------TAAKLGPAFPPNADSVLINGL-GR 176
Query: 123 LYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVI 182
++ + VE + R+++ + + F + H +T++ VD +P I
Sbjct: 177 FAGGNASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSI 236
Query: 183 MIAPGQTTNVLLTADQ 198
I Q + +L A Q
Sbjct: 237 QIFASQRYSFVLNATQ 252
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 343 PPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVED-----HPMHL 397
P VP ++ +G S P +Y L S +++ F T++ V + HP HL
Sbjct: 347 PTVPVLLQILSGAQSASDLLPTG--SVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHL 404
Query: 398 HGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGT-PPGGWVAVRFVAENPG 450
HGH F VV S ++ +N ++P RR+T+ T PG V +RF +N G
Sbjct: 405 HGHAFSVVRSA--------GSSDYNYVNPVRRDTVSTGNPGDNVTIRFTTDNAG 450
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 10/199 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++ QCPI G S+ Y F + DQ GT W+H+H S +
Sbjct: 62 SIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + + + I + +W+ A P +DA ING+
Sbjct: 122 GPFVVYDPNDPAADLYDVDNDDTVITLVDWYH-------VAAKLGPAFPLGADATLINGK 174
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G ++ + V G+ R+++ + + + F + H +T++ D+ T P
Sbjct: 175 -GRSPSTTTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVV 233
Query: 180 SVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 234 DSIQIFAAQRYSFVLEANQ 252
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 368 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP 427
+Y L + ++I F T+ HP HLHGH F VV S + +N +P
Sbjct: 370 SVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSA--------GSTVYNYDNPI 421
Query: 428 RRNTI--GTPPGG-WVAVRFVAENPG 450
R+ + GTP G V +RF +NPG
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFRTDNPG 447
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH--SRWLRATV 59
S+ HG+ Q WADG + V QCPI PG ++ Y+FT GT W+H+H +++ +
Sbjct: 62 SIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDG-L 120
Query: 60 YGALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +++Y E I+ W P ++ A DA ING+
Sbjct: 121 RGPMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQGAA-------QPDATLINGK 173
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G + E VE G+ +R+I+ + + F + H+LT++ VD T+P
Sbjct: 174 -GRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTV 232
Query: 180 SVIMIAPGQTTNVLLTADQP 199
+ I GQ + +L A+QP
Sbjct: 233 DRLQIFTGQRYSFVLDANQP 252
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 393 HPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTP-PGGWVAVRFVAENPG 450
HP HLHGH F VV S ++ +N ++P +R+ + G V +RFV +NPG
Sbjct: 396 HPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPG 446
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH--SRWLRATV 59
S+ HG+ Q WADG + V QCPI PG ++ Y+FT GT W+H+H +++ +
Sbjct: 62 SIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDG-L 120
Query: 60 YGALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +++Y E I+ W P ++ A DA ING+
Sbjct: 121 RGPMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQGAA-------QPDATLINGK 173
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
G + E VE G+ +R+I+ + + F + H+LT++ VD T+P
Sbjct: 174 -GRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTV 232
Query: 180 SVIMIAPGQTTNVLLTADQP 199
+ I GQ + +L A+QP
Sbjct: 233 DRLQIFTGQRYSFVLDANQP 252
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 393 HPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTP-PGGWVAVRFVAENPG 450
HP HLHGH F VV S ++ +N ++P +R+ + G V +RFV +NPG
Sbjct: 396 HPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPG 446
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++ QCPI G S+ Y F + Q GT W+H+H S +
Sbjct: 62 SIHWHGFFQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLR 121
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + I + +W+ A P +D+ ING
Sbjct: 122 GPFVVYDPNDPHANLYDVDDESTVITLADWYH-------VAAKLGPRFPKGADSTLING- 173
Query: 120 PGDLYRCSSKETVRFP---VEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKP 176
L R +S T V G+ R+++ + + + F + +H+LTV+ D T+P
Sbjct: 174 ---LGRSTSTPTADLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQP 230
Query: 177 FPTSVIMIAPGQTTNVLLTADQ 198
I I Q + +L A+Q
Sbjct: 231 VTVDSIQIFAAQRYSFVLNANQ 252
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 26/152 (17%)
Query: 305 NGTRFAASIN-NISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYT--GNVSRGLW 361
N T+ A +N N++F F N +I G+ FT PP P++ N ++ L
Sbjct: 315 NPTQGGADLNLNMAFNFDGTN----FFINGES--FT---PPTVPVLLQIISGANTAQDL- 364
Query: 362 QPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKF 421
+Y L S ++I F T+ HP HLHGH F VV S + +
Sbjct: 365 --LPSGSVYSLPSNSSIEITFPATTAAPGAPHPFHLHGHVFAVVRSA--------GSTSY 414
Query: 422 NLIDPPRRNTI--GTPPGG-WVAVRFVAENPG 450
N DP R+ + GTP G V +RF +NPG
Sbjct: 415 NYDDPVWRDVVSTGTPQAGDNVTIRFQTDNPG 446
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 8/200 (4%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG Q WADGP ++TQCPI G S++Y F + GT W+H+H + +
Sbjct: 63 SIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLR 122
Query: 61 GALIVY-PRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQ 119
G +VY P + + I + +W+ VL + + GGA +D+ I+G
Sbjct: 123 GPFVVYDPNDPDANLYDVDDDTTIITLADWY-----HVLAKEMGAGGAIT-ADSTLIDGL 176
Query: 120 PGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 179
++ VE G+ +R+++ + + + F + H +T++ D ++
Sbjct: 177 GRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTV 236
Query: 180 SVIMIAPGQTTNVLLTADQP 199
I I Q + +L A+QP
Sbjct: 237 DEIQIFAAQRYSFVLNANQP 256
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 393 HPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPP-GGWVAVRFVAENPG 450
HP HLHGH+F V + S + N DP R+ + G V +RF +NPG
Sbjct: 397 HPFHLHGHDFAV--------SESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPG 447
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYG 61
S+ HG+ Q DG ++TQCPI PG + Y FT++ GT W+H+H+
Sbjct: 58 SMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMK 117
Query: 62 ALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALF----TGGAPNISDALTIN 117
L + PY + E+ + + EW+ D+ + + TG P I L +N
Sbjct: 118 GLFIIKDDSFPYDY---DEELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEP-IPQNLIVN 173
Query: 118 GQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPF 177
+ + + V+ T LLRI+N +F + +H++TVV +D T+
Sbjct: 174 ----------NTMNLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKN 223
Query: 178 PTSVIMIAPGQTTNVLL 194
T ++ I Q VL+
Sbjct: 224 VTDMLYITVAQRYTVLV 240
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 365 KRTKLYKLKFGSRVQIVF--QDTSIVSVEDHPMHLHGHEFYVV------GSGLG----NF 412
T + L+ V+IV QDT HP HLHGH F + LG +F
Sbjct: 367 SNTHTFILEKDEIVEIVLNNQDTGT-----HPFHLHGHAFQTIQRDRTYDDALGEVPHSF 421
Query: 413 NPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450
+P A P RR+T+ P +RF A+NPG
Sbjct: 422 DPDNHPAFPEY--PMRRDTLYVRPQSNFVIRFKADNPG 457
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG+ Q + DG VTQCPI PG + TY+F + Q GT W+H+H S ++
Sbjct: 122 SIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLF 180
Query: 61 GALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQP 120
G LI+ + Y ++ ++ + W + + + G P + + L +NG
Sbjct: 181 GPLIINGPATADY-----DEDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGT- 233
Query: 121 GDLYRCSSK---------ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDT 171
+ + CS+ + G LR+IN ++ F + NH LTV+ D
Sbjct: 234 -NTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDL 292
Query: 172 SYTKPFPTSVIMIAPGQTTNVLLTAD 197
P+ T ++I GQ +V++ A+
Sbjct: 293 VPIVPYTTDTLLIGIGQRYDVIVEAN 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 393 HPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450
HP+HLHGH+F++V FN AKFNL++PPRR+ P G++A+ F +NPG
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPG 520
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH-SRWLRATVY 60
S+ HG+ Q + DG VTQCPI PG + TY+F + Q GT W+H+H S ++
Sbjct: 122 SIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLF 180
Query: 61 GALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQP 120
G LI+ + Y ++ ++ + W + + + G P + + L +NG
Sbjct: 181 GPLIINGPATADY-----DEDVGVIFLQDWAHESVFEIWDTARLGAPPALENTL-MNGT- 233
Query: 121 GDLYRCSSK---------ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDT 171
+ + CS+ + G LR+IN ++ F + NH LTV+ D
Sbjct: 234 -NTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDL 292
Query: 172 SYTKPFPTSVIMIAPGQTTNVLLTAD 197
P+ T ++I GQ +V++ A+
Sbjct: 293 VPIVPYTTDTLLIGIGQRYDVIVEAN 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 393 HPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450
HP+HLHGH+F++V FN AKFNL++PPRR+ P G++A+ F +NPG
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPG 520
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 2 SLFRHGVHQTRNPW-ADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAH----SRWLR 56
++ HG+ Q R W +DG + TQ I+PG ++TY+F E GT+W+H H
Sbjct: 57 TIHWHGMLQ-RGTWQSDGVPHATQHAIEPGDTFTYKFKAE-PAGTMWYHCHVNVNEHVTM 114
Query: 57 ATVYGALIVYPRMGSPYPFPMPK---REIPILIGEW---WDRDPMDVLRQALFTGGAP-N 109
++G LIV P+ P P+ K ++ +++ +W W P + GG P +
Sbjct: 115 RGMWGPLIVEPK----NPLPIEKTVTKDYILMLSDWVSSWANKPGE--------GGIPGD 162
Query: 110 ISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANH-KLTVVG 168
+ D TIN + S ET V+ G+ I LR+I + +H + H ++ +
Sbjct: 163 VFDYYTINAK-------SFPETQPIRVKKGDVIRLRLIGAG---DHVHAIHTHGHISQIA 212
Query: 169 VDTSY--TKPFPTSVIMIAPGQTTNVLLTADQP 199
+ KP ++I PG+ +V+L D P
Sbjct: 213 FKDGFPLDKPIKGDTVLIGPGERYDVILNMDNP 245
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQP-GRSYTYRFTIEDQEGTLWWHAHSRWLRATVY 60
S+ HG+HQ DG VT+CPI P G TYR+ Q GT W+H+H A
Sbjct: 91 SIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSH---FSAQYG 146
Query: 61 GALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQP 120
++ ++ P P I +++ R D++ AP SD + ING
Sbjct: 147 NGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVH--FTQNNAPPFSDNVLINGTA 204
Query: 121 GDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTS 180
+ + + G+ LRI+N++ + NH +TV+ D
Sbjct: 205 VNP-NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVD 263
Query: 181 VIMIAPGQTTNVLLTADQPP 200
+ +A GQ +V++ A + P
Sbjct: 264 SLFLAVGQRYDVVIDASRAP 283
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 393 HPMHLHGHEFYVVGSGLGN---------FNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVR 443
HPMHLHGH+F V+G F+P+ D A+ N +PPRR+T P GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 444 FVAENPG 450
F +NPG
Sbjct: 491 FRTDNPG 497
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQP-GRSYTYRFTIEDQEGTLWWHAHSRWLRATVY 60
S+ HG+HQ DG VT+CPI P G TYR+ Q GT W+H+H A
Sbjct: 91 SIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSH---FSAQYG 146
Query: 61 GALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQP 120
++ ++ P P I +++ R D++ AP SD + ING
Sbjct: 147 NGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVH--FTQNNAPPFSDNVLINGTA 204
Query: 121 GDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTS 180
+ + + G+ LRI+N++ + NH +TV+ D
Sbjct: 205 VNP-NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVD 263
Query: 181 VIMIAPGQTTNVLLTADQPP 200
+ +A GQ +V++ A + P
Sbjct: 264 SLFLAVGQRYDVVIDASRAP 283
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 393 HPMHLHGHEFYVVGSGLGN---------FNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVR 443
HPMHLHGH+F V+G F+P+ D A+ N +PPRR+T P GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 444 FVAENPG 450
F +NPG
Sbjct: 491 FRTDNPG 497
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 8/199 (4%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQP-GRSYTYRFTIEDQEGTLWWHAHSRWLRATVY 60
S+ HG+ Q N + DG VT+CPI P G TY+F Q GT W+H+H A
Sbjct: 132 SMHWHGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSH---FSAQYG 187
Query: 61 GALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQP 120
++ ++ P P + +++ R +++ G P SD + NG
Sbjct: 188 NGVVGTIQIDGPASLPYDIDLGVFPLMDYYYRSADELVHFTQSNGAPP--SDNVLFNGT- 244
Query: 121 GDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTS 180
+ + + G+ LRIIN++ + + H +TV+ D F S
Sbjct: 245 ARHPETGAGQWYNVTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVS 304
Query: 181 VIMIAPGQTTNVLLTADQP 199
+ +A GQ +V + A+ P
Sbjct: 305 SLFLAVGQRYDVTIDANSP 323
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 393 HPMHLHGHEFYVVG--------SGLGN-FNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVR 443
HPMHLHGH+F V+G +G+ + F+P+ D + +P RR+ P GGW+ +
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 444 FVAENPG 450
F +NPG
Sbjct: 532 FKTDNPG 538
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 8/200 (4%)
Query: 2 SLFRHGVHQTRNPWADGPEYVTQCPIQP-GRSYTYRFTIEDQEGTLWWHAHSRWLRATVY 60
S+ HG+ Q DG VT+CPI P G TYR+ Q GT W+H+H A
Sbjct: 91 SIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSH---FSAQYG 146
Query: 61 GALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQP 120
++ ++ P P I +++ R D++ AP SD + ING
Sbjct: 147 NGVVGTIQINGPASLPYDIDLGVFPITDYYYRAADDLVH--FTQNNAPPFSDNVLINGTA 204
Query: 121 GDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTS 180
+ + + G+ LRI+N++ + NH +TV+ D
Sbjct: 205 VNP-NTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVD 263
Query: 181 VIMIAPGQTTNVLLTADQPP 200
+ +A GQ +V++ A + P
Sbjct: 264 SLFLAVGQRYDVVIDASRAP 283
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 393 HPMHLHGHEFYVVGSGLGN---------FNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVR 443
HPMHLHGH+F V+G F+P+ D A+ N +PPRR+T P GGW+ +
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 444 FVAENPG 450
F +NPG
Sbjct: 491 FRTDNPG 497
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 27 IQPGRSYTYRFTI-EDQEGTLWWHAH-----SRWLRATVYGALIVYPRMGSPYPFPMPKR 80
I PG S+TY FT+ ++ GT W+H H + L A + GAL+V + +
Sbjct: 89 IPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDA--------- 139
Query: 81 EIPILIGEWWDRDPMDVLRQALFTGGAPNISDALT-INGQPGDLYRCSSKETVRFPVEAG 139
IP L + + VL+ GG P + +NG+ GDL + V
Sbjct: 140 -IPELREA---EEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTL-VAQK 194
Query: 140 ETILLRIINSAMNQEHFFGVANHKLTVVGVDTSY-TKPFPTSVIMIAPGQTTNVLL 194
T+ LR++N++ + + + +H L ++ D + +P S +++APG+ VL+
Sbjct: 195 ATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLV 250
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 25/180 (13%)
Query: 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYG----ALIVYPRMGSPYPFPMPKREI 82
I PG SY Y F + ++ GT +H H L A + L++ GS F ++
Sbjct: 81 ITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDL 140
Query: 83 PILIGEWWDRDPMDVLRQALFTGGAP--NISDALTINGQPGDLYRCSSKETVRFPVEAGE 140
P++I DR F GGAP N + I G G+ + + F + G
Sbjct: 141 PLVIS---DRR---------FIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLSGG- 187
Query: 141 TILLRIINSAMNQEHFFGVANHK-----LTVVGVDTSY-TKPFPTSVIMIAPGQTTNVLL 194
+ LR++N + + + + + ++ VD + +P + +AP + V++
Sbjct: 188 SYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVV 247
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 34/145 (23%)
Query: 6 HGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSR----WLRATVYG 61
HGVH+ DG + I PG+S+TY F GT +H H + +YG
Sbjct: 93 HGVHRAT---MDGTPGIGAGSIAPGQSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYG 148
Query: 62 ALIVYPRMGSPYPFPMPKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPG 121
IV P+ G P P + +++ ++ D GG N + ++NG P
Sbjct: 149 GFIVEPKEGRP-----PADDEMVMVMNGYNTD-----------GGDDN--EFYSVNGLPF 190
Query: 122 DLYRCSSKETVRFPVEAGETILLRI 146
+ FPV+ + L+RI
Sbjct: 191 HF--------MDFPVKVKQHELVRI 207
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 364 RKRTKLYKLKFGSRVQIVFQDTSIV--SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKF 421
RK L ++ S++ +V +D ++ S DHP H+HG +F ++ S L N A+F
Sbjct: 377 RKSYDLKRIDLSSKLGVV-EDWIVINKSHMDHPFHIHGTQFELISSKL---NGKVQKAEF 432
Query: 422 NLIDPPRRNTIGTPPGGWVAVRFVAENPG 450
+ R+TI P + +R + G
Sbjct: 433 RAL----RDTINVRPNEELRLRMKQDFKG 457
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 23/178 (12%)
Query: 26 PIQPGRSYTYRFTI-EDQEGTLWWHAH-----SRWLRATVYGALIVYPRMGSPYPFPMPK 79
PI G YRF I +D GT W+H H S+ + + GA ++ + +
Sbjct: 124 PILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDA-------- 175
Query: 80 REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAG 139
+ ++D M + PN + +NG+ G+ + + + +
Sbjct: 176 ------LSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATN 229
Query: 140 ETILLRIINSAMNQEHFFGVANHKLTVVGVDTSY-TKPFPTSVIMIAPGQTTNVLLTA 196
E I RI N+ + + K +VG D K + ++P VL+ A
Sbjct: 230 ERI--RIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDA 285
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 41 DQEGTLWW-HAHS----RW-LRATVYGALIVYPRMGSPYPFPMPKREIPILIGE 88
D + T WW H H+ RW + A +YG +V P REIP+LI +
Sbjct: 162 DHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIPLLIAD 215
>pdb|1NEP|A Chain A, Crystal Structure Analysis Of The Bovine Npc2
(Niemann-Pick C2) Protein
pdb|2HKA|A Chain A, Crystal Structure Of Bovine Npc2 And Cholesterol Sulfate
Complex
pdb|2HKA|B Chain B, Crystal Structure Of Bovine Npc2 And Cholesterol Sulfate
Complex
pdb|2HKA|C Chain C, Crystal Structure Of Bovine Npc2 And Cholesterol Sulfate
Complex
Length = 130
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 22 VTQCPIQP-----GRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVYPRMGSPYPFP 76
V+ CP QP G+SY+ T + S+ +A V+G + MG P PFP
Sbjct: 20 VSPCPTQPCKLHRGQSYSVNVTFTS-------NTQSQSSKAVVHGIV-----MGIPVPFP 67
Query: 77 MPKRE 81
+P+ +
Sbjct: 68 IPESD 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,976,638
Number of Sequences: 62578
Number of extensions: 580423
Number of successful extensions: 1393
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 67
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)