Query 013075
Match_columns 450
No_of_seqs 182 out of 1627
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 00:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 7.9E-91 1.7E-95 721.3 48.1 437 1-450 56-497 (539)
2 PLN00044 multi-copper oxidase- 100.0 4E-89 8.6E-94 702.9 45.0 417 1-450 82-511 (596)
3 PLN02991 oxidoreductase 100.0 6.1E-88 1.3E-92 690.5 44.4 403 1-450 81-488 (543)
4 PLN02792 oxidoreductase 100.0 1.4E-87 3E-92 688.9 43.4 406 1-450 69-481 (536)
5 PLN02354 copper ion binding / 100.0 2.9E-87 6.4E-92 689.7 44.0 404 1-450 80-496 (552)
6 KOG1263 Multicopper oxidases [ 100.0 9.5E-86 2.1E-90 670.4 43.3 426 1-450 81-513 (563)
7 PLN02168 copper ion binding / 100.0 1.3E-85 2.8E-90 674.6 44.3 397 1-450 79-493 (545)
8 PLN02835 oxidoreductase 100.0 1.9E-85 4.1E-90 675.4 44.0 395 1-450 82-489 (539)
9 PLN02191 L-ascorbate oxidase 100.0 1.6E-83 3.4E-88 666.6 45.8 419 1-450 77-524 (574)
10 TIGR03388 ascorbase L-ascorbat 100.0 2.5E-82 5.5E-87 657.3 45.7 420 1-450 55-501 (541)
11 TIGR03390 ascorbOXfungal L-asc 100.0 1.4E-81 2.9E-86 650.0 43.7 408 1-450 62-509 (538)
12 PLN02604 oxidoreductase 100.0 3.4E-81 7.3E-86 650.6 46.3 419 1-450 78-524 (566)
13 TIGR01480 copper_res_A copper- 100.0 6.8E-63 1.5E-67 510.1 38.2 348 1-450 98-564 (587)
14 PRK10965 multicopper oxidase; 100.0 4.7E-57 1E-61 463.5 34.8 193 1-210 99-301 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1E-54 2.2E-59 442.4 34.3 327 1-450 99-441 (471)
16 COG2132 SufI Putative multicop 100.0 1.1E-45 2.3E-50 377.9 31.3 337 1-450 86-426 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 9.8E-39 2.1E-43 308.9 16.8 208 2-233 84-300 (311)
18 PF00394 Cu-oxidase: Multicopp 100.0 2.6E-31 5.6E-36 233.7 12.6 150 80-231 1-159 (159)
19 PF07732 Cu-oxidase_3: Multico 99.9 3.2E-25 6.9E-30 183.6 5.4 69 1-69 48-117 (117)
20 PF07731 Cu-oxidase_2: Multico 99.8 1E-18 2.2E-23 150.1 7.2 83 364-450 30-112 (138)
21 TIGR03095 rusti_cyanin rusticy 99.5 4.1E-14 8.8E-19 121.7 5.6 61 3-66 79-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.3 9.7E-10 2.1E-14 106.9 21.8 222 111-450 47-272 (311)
23 TIGR03389 laccase laccase, pla 98.9 1.9E-07 4E-12 98.0 20.8 231 111-448 22-253 (539)
24 PLN02835 oxidoreductase 98.9 2E-07 4.3E-12 97.2 20.1 84 111-209 48-132 (539)
25 PLN02792 oxidoreductase 98.7 5.8E-07 1.3E-11 93.5 19.0 82 111-209 35-119 (536)
26 PLN02354 copper ion binding / 98.7 1.2E-06 2.6E-11 91.6 19.6 84 111-209 46-130 (552)
27 PLN02991 oxidoreductase 98.7 1.2E-06 2.6E-11 91.2 18.7 84 111-209 47-131 (543)
28 PLN02168 copper ion binding / 98.6 2E-06 4.4E-11 89.6 18.7 84 111-209 45-129 (545)
29 TIGR03388 ascorbase L-ascorbat 98.6 2.3E-06 4.9E-11 89.9 19.2 85 111-209 20-105 (541)
30 TIGR03390 ascorbOXfungal L-asc 98.6 2.6E-06 5.5E-11 89.3 19.3 236 112-449 28-266 (538)
31 PLN02604 oxidoreductase 98.5 1.1E-05 2.4E-10 85.0 20.3 85 111-209 43-128 (566)
32 PRK10883 FtsI repressor; Provi 98.5 1.5E-05 3.2E-10 82.2 19.9 80 112-209 66-145 (471)
33 PLN02191 L-ascorbate oxidase 98.5 8.8E-06 1.9E-10 85.7 18.5 85 111-209 42-127 (574)
34 TIGR01480 copper_res_A copper- 98.5 4.8E-07 1E-11 94.9 8.8 85 114-209 488-572 (587)
35 PF07731 Cu-oxidase_2: Multico 98.5 1.5E-06 3.3E-11 74.3 10.5 78 131-210 33-121 (138)
36 PLN00044 multi-copper oxidase- 98.4 1.3E-05 2.7E-10 84.3 18.9 83 112-209 49-132 (596)
37 PRK10965 multicopper oxidase; 98.3 2.1E-06 4.6E-11 89.3 10.3 90 114-210 414-509 (523)
38 KOG1263 Multicopper oxidases [ 98.0 0.00051 1.1E-08 71.6 19.6 86 111-211 47-133 (563)
39 COG2132 SufI Putative multicop 97.9 0.00017 3.7E-09 74.3 13.1 90 112-210 343-435 (451)
40 PF07732 Cu-oxidase_3: Multico 97.6 0.00017 3.7E-09 59.7 6.1 87 111-211 14-101 (117)
41 PF00394 Cu-oxidase: Multicopp 97.3 0.00042 9.1E-09 60.8 5.6 70 367-450 59-129 (159)
42 TIGR02656 cyanin_plasto plasto 97.1 0.00066 1.4E-08 54.4 3.9 37 26-66 63-99 (99)
43 PF00127 Copper-bind: Copper b 96.9 0.0014 3E-08 52.5 4.2 36 27-66 64-99 (99)
44 TIGR03095 rusti_cyanin rusticy 96.7 0.0086 1.9E-07 51.6 8.4 86 110-209 40-133 (148)
45 TIGR03096 nitroso_cyanin nitro 96.6 0.0099 2.1E-07 49.9 7.7 62 131-210 60-121 (135)
46 TIGR03096 nitroso_cyanin nitro 96.2 0.0033 7.1E-08 52.7 2.4 29 26-55 95-123 (135)
47 PF13473 Cupredoxin_1: Cupredo 96.0 0.037 8.1E-07 44.6 7.8 61 131-209 34-94 (104)
48 PRK02710 plastocyanin; Provisi 95.2 0.023 5E-07 47.1 3.9 37 26-66 83-119 (119)
49 TIGR03102 halo_cynanin halocya 94.3 0.051 1.1E-06 44.6 3.7 36 27-66 80-115 (115)
50 TIGR02657 amicyanin amicyanin. 93.6 0.083 1.8E-06 40.7 3.5 34 27-66 50-83 (83)
51 TIGR02375 pseudoazurin pseudoa 93.6 0.1 2.2E-06 43.0 4.1 39 28-70 53-91 (116)
52 PRK02888 nitrous-oxide reducta 93.0 0.1 2.2E-06 54.8 4.1 41 27-68 593-635 (635)
53 PF06525 SoxE: Sulfocyanin (So 93.0 0.44 9.6E-06 42.5 7.6 87 113-209 75-171 (196)
54 TIGR02656 cyanin_plasto plasto 92.9 0.37 7.9E-06 38.4 6.3 69 131-208 16-85 (99)
55 PF06525 SoxE: Sulfocyanin (So 91.6 0.26 5.6E-06 44.0 4.3 46 26-72 146-192 (196)
56 PF13473 Cupredoxin_1: Cupredo 91.2 0.17 3.6E-06 40.8 2.6 36 26-65 69-104 (104)
57 COG3794 PetE Plastocyanin [Ene 91.1 0.22 4.8E-06 41.5 3.2 37 27-67 92-128 (128)
58 COG4454 Uncharacterized copper 90.9 0.63 1.4E-05 39.8 5.8 75 131-209 62-142 (158)
59 PRK02888 nitrous-oxide reducta 90.7 1.4 3.1E-05 46.5 9.4 66 131-213 554-621 (635)
60 PF00116 COX2: Cytochrome C ox 90.4 3.4 7.4E-05 34.2 9.7 63 132-213 46-108 (120)
61 TIGR03094 sulfo_cyanin sulfocy 89.4 0.57 1.2E-05 41.1 4.3 44 27-71 146-190 (195)
62 PF12690 BsuPI: Intracellular 87.8 5.2 0.00011 30.6 8.4 65 142-207 4-82 (82)
63 PRK02710 plastocyanin; Provisi 86.2 2.8 6.1E-05 34.6 6.6 60 131-208 46-105 (119)
64 PF00127 Copper-bind: Copper b 80.6 3 6.6E-05 33.0 4.5 64 131-208 16-85 (99)
65 PF04151 PPC: Bacterial pre-pe 79.6 11 0.00024 27.5 7.0 66 131-208 4-69 (70)
66 TIGR02695 azurin azurin. Azuri 78.0 17 0.00036 30.2 8.0 78 132-209 16-112 (125)
67 PF01835 A2M_N: MG2 domain; I 74.5 20 0.00043 28.1 7.6 71 135-209 10-85 (99)
68 PF07705 CARDB: CARDB; InterP 72.0 41 0.0009 25.9 9.0 67 135-210 14-84 (101)
69 TIGR02657 amicyanin amicyanin. 70.1 16 0.00034 27.9 5.8 63 131-209 10-72 (83)
70 TIGR02866 CoxB cytochrome c ox 68.5 22 0.00047 32.3 7.4 63 132-213 117-179 (201)
71 TIGR02695 azurin azurin. Azuri 64.8 6.9 0.00015 32.4 2.9 39 26-64 84-124 (125)
72 TIGR03102 halo_cynanin halocya 61.5 43 0.00094 27.4 7.1 62 131-209 41-102 (115)
73 COG1622 CyoA Heme/copper-type 61.2 56 0.0012 30.7 8.7 64 131-213 136-199 (247)
74 PF10633 NPCBM_assoc: NPCBM-as 60.9 67 0.0014 23.9 8.0 65 136-209 1-75 (78)
75 COG1470 Predicted membrane pro 60.5 65 0.0014 33.0 9.3 76 130-212 387-470 (513)
76 TIGR02375 pseudoazurin pseudoa 59.6 25 0.00054 28.9 5.4 75 131-230 14-88 (116)
77 PF14344 DUF4397: Domain of un 56.5 1.1E+02 0.0023 24.9 10.2 20 143-162 3-23 (122)
78 smart00758 PA14 domain in bact 55.6 90 0.002 25.8 8.5 64 133-201 51-115 (136)
79 COG3794 PetE Plastocyanin [Ene 55.2 53 0.0012 27.5 6.7 62 131-209 53-114 (128)
80 COG4454 Uncharacterized copper 54.2 17 0.00037 31.2 3.7 41 26-67 117-158 (158)
81 PF07691 PA14: PA14 domain; I 54.0 66 0.0014 26.8 7.5 64 133-201 53-123 (145)
82 TIGR03094 sulfo_cyanin sulfocy 51.5 97 0.0021 27.5 7.9 77 131-209 84-170 (195)
83 PRK10378 inactive ferrous ion 50.9 16 0.00035 36.5 3.4 39 26-69 81-119 (375)
84 PF00116 COX2: Cytochrome C ox 48.0 67 0.0015 26.4 6.3 33 367-403 45-77 (120)
85 MTH00047 COX2 cytochrome c oxi 43.4 1E+02 0.0023 27.8 7.2 63 132-213 116-178 (194)
86 MTH00140 COX2 cytochrome c oxi 43.2 91 0.002 28.9 7.1 63 132-213 140-202 (228)
87 PF11142 DUF2917: Protein of u 39.2 1.2E+02 0.0025 21.9 5.6 29 134-167 2-30 (63)
88 PF11614 FixG_C: IG-like fold 39.1 1.6E+02 0.0034 23.8 7.2 49 140-197 33-83 (118)
89 KOG4078 Putative mitochondrial 38.7 12 0.00025 31.4 0.3 38 135-174 119-156 (173)
90 PF14874 PapD-like: Flagellar- 38.3 1.9E+02 0.0041 22.5 8.9 61 135-207 15-84 (102)
91 PF14524 Wzt_C: Wzt C-terminal 37.4 1.4E+02 0.0029 24.6 6.8 72 135-209 30-107 (142)
92 PF06775 Seipin: Putative adip 36.5 49 0.0011 29.9 4.1 50 181-230 50-106 (199)
93 COG1622 CyoA Heme/copper-type 34.4 36 0.00078 32.0 2.9 44 26-70 170-215 (247)
94 MTH00008 COX2 cytochrome c oxi 33.8 2.4E+02 0.0052 26.1 8.2 63 132-213 140-202 (228)
95 PF12690 BsuPI: Intracellular 33.3 38 0.00082 25.9 2.4 34 15-48 41-80 (82)
96 PF10989 DUF2808: Protein of u 33.0 49 0.0011 28.3 3.3 29 24-52 96-127 (146)
97 COG2967 ApaG Uncharacterized p 31.2 30 0.00064 28.3 1.5 22 16-38 65-86 (126)
98 TIGR02866 CoxB cytochrome c ox 31.2 1.6E+02 0.0034 26.6 6.5 27 367-397 116-142 (201)
99 cd08058 MPN_euk_mb Mpr1p, Pad1 30.4 20 0.00044 29.3 0.5 7 47-53 70-76 (119)
100 PRK10378 inactive ferrous ion 29.8 1.8E+02 0.0038 29.2 7.0 64 130-209 42-105 (375)
101 TIGR01433 CyoA cytochrome o ub 29.4 1.6E+02 0.0036 27.2 6.4 63 132-213 139-201 (226)
102 MTH00098 COX2 cytochrome c oxi 27.6 3.2E+02 0.007 25.2 8.0 63 132-213 140-202 (227)
103 COG3354 FlaG Putative archaeal 26.0 2.5E+02 0.0053 24.0 6.0 63 140-207 70-140 (154)
104 MTH00051 COX2 cytochrome c oxi 25.7 3.5E+02 0.0075 25.2 7.8 63 132-213 144-206 (234)
105 MTH00129 COX2 cytochrome c oxi 25.4 3.3E+02 0.0071 25.3 7.6 63 132-213 140-202 (230)
106 PF14326 DUF4384: Domain of un 25.2 3E+02 0.0065 20.7 8.5 15 136-150 3-17 (83)
107 PRK09918 putative fimbrial cha 25.1 1.9E+02 0.0041 26.8 6.0 20 131-150 75-94 (230)
108 PF14016 DUF4232: Protein of u 24.5 3.8E+02 0.0083 22.1 7.3 56 140-198 20-82 (131)
109 PRK05461 apaG CO2+/MG2+ efflux 24.3 46 0.00099 27.8 1.5 21 16-37 66-86 (127)
110 PF07385 DUF1498: Protein of u 24.1 2E+02 0.0043 26.5 5.6 46 137-192 115-166 (225)
111 PF15415 DUF4622: Protein of u 23.8 3.6E+02 0.0078 25.1 7.2 43 132-175 94-137 (310)
112 TIGR02745 ccoG_rdxA_fixG cytoc 23.5 2.6E+02 0.0056 28.7 7.1 50 140-197 348-398 (434)
113 cd00918 Der-p2_like Several gr 23.5 65 0.0014 26.6 2.3 23 16-39 65-87 (120)
114 PTZ00047 cytochrome c oxidase 23.0 5.1E+02 0.011 22.6 8.6 63 132-213 73-135 (162)
115 TIGR01432 QOXA cytochrome aa3 22.5 3.6E+02 0.0077 24.7 7.2 63 132-213 130-192 (217)
116 MTH00154 COX2 cytochrome c oxi 22.3 5.2E+02 0.011 23.9 8.3 63 132-213 140-202 (227)
117 PRK13202 ureB urease subunit b 22.3 3E+02 0.0066 22.0 5.6 64 133-197 12-85 (104)
118 cd00912 ML The ML (MD-2-relate 21.9 78 0.0017 26.1 2.5 17 23-39 78-94 (127)
119 MTH00185 COX2 cytochrome c oxi 21.7 5.4E+02 0.012 23.8 8.3 63 132-213 140-202 (230)
120 cd08067 MPN_2A_DUB Mov34/MPN/P 21.5 37 0.0008 30.5 0.5 7 47-53 84-90 (187)
121 TIGR01433 CyoA cytochrome o ub 21.3 1.6E+02 0.0035 27.2 4.7 18 368-385 139-156 (226)
122 PF02221 E1_DerP2_DerF2: ML do 21.1 71 0.0015 26.3 2.2 17 23-39 84-100 (134)
123 PF04744 Monooxygenase_B: Mono 21.0 57 0.0012 32.2 1.7 55 15-69 71-130 (381)
124 PF10246 MRP-S35: Mitochondria 21.0 48 0.001 26.4 1.0 40 135-176 60-99 (104)
125 PF04379 DUF525: Protein of un 20.6 88 0.0019 24.4 2.4 21 17-38 50-70 (90)
126 cd08068 MPN_BRCC36 Mov34/MPN/P 20.3 41 0.00088 31.5 0.5 8 46-53 93-100 (244)
127 KOG1555 26S proteasome regulat 20.3 37 0.0008 32.9 0.2 9 45-53 118-126 (316)
128 PF14321 DUF4382: Domain of un 20.3 4.7E+02 0.01 21.8 7.1 62 132-198 61-123 (139)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=7.9e-91 Score=721.33 Aligned_cols=437 Identities=62% Similarity=1.110 Sum_probs=347.2
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEecCCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVYPRMGSPYPFPMPKR 80 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~ 80 (450)
|+|||||++|.+++||||||++|||||+||++|+|+|++.+++||||||||.+.|++||+|+|||+++.+.++++..+|+
T Consensus 56 tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~ 135 (539)
T TIGR03389 56 VTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDR 135 (539)
T ss_pred eeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCc
Confidence 68999999999999999999999999999999999999856999999999999888899999999998876677767789
Q ss_pred ceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEe
Q 013075 81 EIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVA 160 (450)
Q Consensus 81 e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~ 160 (450)
|++|+|+||+++...+++......+..+.++|++||||+.+..++|+....++++|++||+|||||||+|+...+.|+|+
T Consensus 136 e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~id 215 (539)
T TIGR03389 136 EVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIA 215 (539)
T ss_pred eEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEEC
Confidence 99999999999998887776666666667889999999987778898777889999999999999999999999999999
Q ss_pred CcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCCC
Q 013075 161 NHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKS 240 (450)
Q Consensus 161 gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~ 240 (450)
||+|+|||+||.+++|+.++.|.|++||||||+|++++.+|+||||+....++...+......|||+|.++...
T Consensus 216 gH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~------ 289 (539)
T TIGR03389 216 NHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNS------ 289 (539)
T ss_pred CCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCC------
Confidence 99999999999999999999999999999999999998889999999876544322344678999999876441
Q ss_pred CCCCCcCCCCCCCCCccchhhhhhcccccc----cCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeeccc
Q 013075 241 RSSAPIFPILPGFNDTATATAFTARIKSLH----QVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNI 316 (450)
Q Consensus 241 ~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~----p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~ 316 (450)
..+..+..+.++++.....+...++++. +...|..+|+++++.+.+...... ...+...++..+.|+|||+
T Consensus 290 --~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~w~in~~ 364 (539)
T TIGR03389 290 --AKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCP---NNTCQGPNGTRFAASMNNI 364 (539)
T ss_pred --CCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCc---ccccccCCCcEEEEEECCc
Confidence 1111122222333222111222344332 223344667777766654321100 0001111345689999999
Q ss_pred cccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCC-CCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCc
Q 013075 317 SFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNV-SRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPM 395 (450)
Q Consensus 317 ~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~ 395 (450)
+|..|.+ |+|++.+.++++.+.++++..+|++|++.+.. +.++ ..+.+++++.+++|++|||+|+|.+.+....|||
T Consensus 365 s~~~p~~-p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~ 442 (539)
T TIGR03389 365 SFVMPTT-ALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNL-FTTNGTKVVRLKFNSTVELVLQDTSILGSENHPI 442 (539)
T ss_pred ccCCCCc-chhhhhhcccCCccccCCccCCCccccCCCCCccccc-ccccCceEEEecCCCEEEEEEecCCcCCCCCCcE
Confidence 9998888 56677666667777777777889888766542 2222 2244678999999999999999975434568999
Q ss_pred ccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 396 HLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 396 HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
|||||+||||++|.|.|+..+....+|+.||++|||++||++||++|||+|||||
T Consensus 443 HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG 497 (539)
T TIGR03389 443 HLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPG 497 (539)
T ss_pred eEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCe
Confidence 9999999999999999987655557899999999999999999999999999998
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4e-89 Score=702.88 Aligned_cols=417 Identities=29% Similarity=0.443 Sum_probs=324.9
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|..++|||||++ |||||+||++|+|+|++.+|+||||||||...|++ ||+|+|||++++..++|+...+
T Consensus 82 ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~ 160 (596)
T PLN00044 82 LLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPD 160 (596)
T ss_pred ccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCc
Confidence 799999999999999999988 99999999999999998679999999999999996 9999999999876666665434
Q ss_pred -CceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCC----CCceeeEEeeCCCEEEEEEEecCCCce
Q 013075 80 -REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCS----SKETVRFPVEAGETILLRIINSAMNQE 154 (450)
Q Consensus 80 -~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~----~~~~~~~~v~~G~~~rlRliN~~~~~~ 154 (450)
+|.+|+|+||+++...++. ..+..|..+.++++++|||+....++|+ ....++++|++||+|||||||++....
T Consensus 161 ~~e~~i~l~DW~~~~~~~~~-~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~ 239 (596)
T PLN00044 161 GGDITLFIADWYARDHRALR-RALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATS 239 (596)
T ss_pred ccceEEEecccccCCHHHHH-HHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCce
Confidence 7999999999999876643 3444555556789999999976445665 234468999999999999999999999
Q ss_pred EEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCc-eeEEEeeee-ccccccCCCccEEEEEEeccCC
Q 013075 155 HFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPA-RYYMAAHAY-NTANAAFDNTTTTAILEYKSAP 232 (450)
Q Consensus 155 ~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g-~y~l~~~~~-~~~~~~~~~~~~~ail~y~~~~ 232 (450)
+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|+++++++ +|||++... ..+. .+++..+.|||+|.++.
T Consensus 240 ~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~ 318 (596)
T PLN00044 240 LNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA-VVDKLTGVAILHYSNSQ 318 (596)
T ss_pred EEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc-cccCcceeEEEEECCCC
Confidence 99999999999999999999999999999999999999999998775 999998642 3332 24566789999998754
Q ss_pred CCCCCCCCCCCCCcCCCCCC-CCCccchhhhhhccccccc----CCCCcccceeEEEEeccceeccCCCCCCCccCCCCC
Q 013075 233 FNGKKGKSRSSAPIFPILPG-FNDTATATAFTARIKSLHQ----VQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGT 307 (450)
Q Consensus 233 ~~~~~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~l~~l~p----~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
. ......|..+. ++++.....+...++.+.. .+.|...+....+.++...... . .+.....+
T Consensus 319 ~--------~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~-~~~~~~~g 385 (596)
T PLN00044 319 G--------PASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQ----S-MAPELIDG 385 (596)
T ss_pred C--------CCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeec----c-ccccccCC
Confidence 3 11111354453 5555433333344443321 1222223333333333221000 0 00000113
Q ss_pred eeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCC
Q 013075 308 RFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSI 387 (450)
Q Consensus 308 ~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~ 387 (450)
++.|+|||++|..|+. |+|.+.+.+.++.|.+++|+.||... ....+.++.+++|++|||||+|..
T Consensus 386 ~~~~s~Nnvsf~~p~~-p~L~a~~~~~~gv~~~~fp~~pp~~~------------~~~~t~v~~~~~n~~VeiV~qn~~- 451 (596)
T PLN00044 386 KLRATLNEISYIAPST-PLMLAQIFNVPGVFKLDFPNHPMNRL------------PKLDTSIINGTYKGFMEIIFQNNA- 451 (596)
T ss_pred eEEEEECcccCCCCCC-cchhhhhccCCCcccCCCCCCCCccc------------cccCceEEEcCCCCEEEEEEeCCC-
Confidence 6899999999999988 66766667778999989988777421 123577899999999999999953
Q ss_pred CCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 388 VSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 388 ~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
...||||||||+|+||++|.|+|+++ +...+|+.||++||||.||++||++|||+|||||
T Consensus 452 --~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG 511 (596)
T PLN00044 452 --TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAG 511 (596)
T ss_pred --CCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCE
Confidence 45899999999999999999999965 4568999999999999999999999999999998
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=6.1e-88 Score=690.52 Aligned_cols=403 Identities=27% Similarity=0.416 Sum_probs=308.4
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++|||||++ |||||+||++|+|+|++.+|+||||||||.+.|++ ||+|+|||++++..+.|+..++
T Consensus 81 ttiHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d 159 (543)
T PLN02991 81 FLISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPA 159 (543)
T ss_pred ccEEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCccccccc
Confidence 799999999999999999998 99999999999999998668999999999999996 9999999999876666766678
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGV 159 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 159 (450)
+|++|+|+||+++...++... ...+..+.++|++||||+.. .++++|++||+|||||||+|....+.|+|
T Consensus 160 ~d~~i~l~DW~~~~~~~~~~~-~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~i 229 (543)
T PLN02991 160 DDYTVLIGDWYKTNHKDLRAQ-LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRI 229 (543)
T ss_pred ceeEEEecceecCCHHHHHHH-hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEE
Confidence 999999999999987665543 33455556899999999953 36899999999999999999999999999
Q ss_pred eCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCC
Q 013075 160 ANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGK 239 (450)
Q Consensus 160 ~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 239 (450)
+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++...... ......|||+|+++....
T Consensus 230 dgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~---- 301 (543)
T PLN02991 230 QNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPV---- 301 (543)
T ss_pred CCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCC----
Confidence 999999999999999999999999999999999999999889999999863321 234679999999865311
Q ss_pred CCCCCCcCCCCCCCCCcc--chhhhhhcccccccCCCCcccceeEEEEecccee-ccCCCCCCCccCCCCCeeeeeeccc
Q 013075 240 SRSSAPIFPILPGFNDTA--TATAFTARIKSLHQVQVPTVIDENLFFTVGLGLI-NCSNPNSPRCQGPNGTRFAASINNI 316 (450)
Q Consensus 240 ~~~~~~~~p~~p~~~~~~--~~~~~~~~l~~l~p~~~p~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iN~~ 316 (450)
..+.|..|.-.... ...+....|.+..+.+.|...+....+.++.... .+. .+...++..|+|||.
T Consensus 302 ----~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~iN~~ 370 (543)
T PLN02991 302 ----SGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANS-------AGNIEGKQRYAVNSA 370 (543)
T ss_pred ----CCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeec-------ccccCceEEEEECCC
Confidence 10122222111110 0111223344333333332222211111111100 000 000123678999999
Q ss_pred cccCCCchhhHHHHHhCCCCCccCC-CCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCc
Q 013075 317 SFVFPRRNSLMQAYIQGQPGIFTTD-FPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPM 395 (450)
Q Consensus 317 ~~~~p~~~~ll~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~ 395 (450)
+|..|.+ |+|.+.+.+.+|.|..+ ++..+|.. ......+++.+++|++|||||+|.. ...|||
T Consensus 371 s~~~p~~-p~L~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~ 434 (543)
T PLN02991 371 SFYPADT-PLKLADYFKIAGVYNPGSIPDQPTNG------------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTW 434 (543)
T ss_pred ccCCCCC-ChhhhhhhcccCccccccccccCCCC------------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCe
Confidence 9998887 66666666777887654 44444321 0112356889999999999999953 458999
Q ss_pred ccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 396 HLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 396 HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
|||||+||||++|.|.|++. +...+|+.||++|||+.||++||++|||+|||||
T Consensus 435 HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG 488 (543)
T PLN02991 435 HLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVG 488 (543)
T ss_pred eeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCE
Confidence 99999999999999999875 4567999999999999999999999999999998
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.4e-87 Score=688.93 Aligned_cols=406 Identities=27% Similarity=0.404 Sum_probs=310.1
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++|||||++ |||||+||++|+|+|++++|+||||||||...|++ ||+|+|||++++..+.+++.++
T Consensus 69 ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d 147 (536)
T PLN02792 69 FLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPA 147 (536)
T ss_pred cCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCccc
Confidence 689999999999999999988 99999999999999998678999999999999996 9999999998765556666778
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCCC-CCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGGA-PNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFG 158 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~ 158 (450)
+|++|+|+||+++....+.. ....+.. +.++|++||||+... ..++++|++||+|||||||+|....+.|+
T Consensus 148 ~e~~i~l~Dw~~~~~~~~~~-~~~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~ 219 (536)
T PLN02792 148 GDFTFLIGDWYRRNHTTLKK-ILDGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFE 219 (536)
T ss_pred ceeEEEecccccCCHHHHHH-HhhccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEE
Confidence 99999999999998766433 3344433 448899999999641 13789999999999999999999999999
Q ss_pred EeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCC
Q 013075 159 VANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKG 238 (450)
Q Consensus 159 i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~ 238 (450)
|+||+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++.....+ .+....|||+|.++...
T Consensus 220 i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~---- 291 (536)
T PLN02792 220 ILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGH---- 291 (536)
T ss_pred ECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCC----
Confidence 9999999999999999999999999999999999999998889999999864322 23567899999876441
Q ss_pred CCCCCCCcCCCCCCCCCccchhhh----hhcccccccCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeec
Q 013075 239 KSRSSAPIFPILPGFNDTATATAF----TARIKSLHQVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASIN 314 (450)
Q Consensus 239 ~~~~~~~~~p~~p~~~~~~~~~~~----~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN 314 (450)
.+ ..|..|.+++......+ ...+.+..+...|+..++...+.++...... . .....++...|+||
T Consensus 292 ----~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~iN 360 (536)
T PLN02792 292 ----KI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILE----S--SAALVKRKQRYAIN 360 (536)
T ss_pred ----CC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEec----c--cccccCceeEEEEC
Confidence 11 12223333333222111 1122211122233222222122211111000 0 00001126789999
Q ss_pred cccccCCCchhhHHHHHhCCCCCccCC-CCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCC
Q 013075 315 NISFVFPRRNSLMQAYIQGQPGIFTTD-FPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDH 393 (450)
Q Consensus 315 ~~~~~~p~~~~ll~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~H 393 (450)
|++|..|++ |+|.+.+.+++|.+..+ ++..||..++. ..+++++.+++|++|||||+|.. ...|
T Consensus 361 ~~s~~~p~~-p~L~a~~~~~~g~~~~~~~~~~p~~~~~~-----------~~~~~v~~~~~~~~VeiViqn~~---~~~H 425 (536)
T PLN02792 361 GVSFVPSDT-PLKLADHFKIKGVFKVGSIPDKPRRGGGM-----------RLDTSVMGAHHNAFLEIIFQNRE---KIVQ 425 (536)
T ss_pred CcccCCCCC-chhhhhhhccCCCcCcccCccCCcccCCC-----------ccCceEEEcCCCCEEEEEEECCC---CCCC
Confidence 999999988 66666666777877653 77666653321 23467899999999999999953 4579
Q ss_pred CcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 394 PMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 394 P~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
|||||||+||||++|.|.|++. +...+|+.||++||||.||++||++|||+|||||
T Consensus 426 P~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPG 481 (536)
T PLN02792 426 SYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVG 481 (536)
T ss_pred CeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEEECCCCEEEEEEEeeCCE
Confidence 9999999999999999999874 4567999999999999999999999999999998
No 5
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.9e-87 Score=689.68 Aligned_cols=404 Identities=26% Similarity=0.457 Sum_probs=306.6
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++||||||+ |||||+||++|+|+|++.+|+||||||||...|++ ||+|+|||+++...+.+++.++
T Consensus 80 ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d 158 (552)
T PLN02354 80 FLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPE 158 (552)
T ss_pred cccccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcC
Confidence 789999999999999999999 99999999999999998678999999999999996 9999999999876666776678
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGV 159 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 159 (450)
+|++|+|+|||++...++.. ....+..+..++++||||+....+. ...+.++|++||+|||||||+|+...+.|+|
T Consensus 159 ~e~~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~I 234 (552)
T PLN02354 159 DDYTVLIGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRI 234 (552)
T ss_pred ceEEEEeeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEE
Confidence 99999999999998766543 3444544557899999999643221 2357899999999999999999999999999
Q ss_pred eCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCC
Q 013075 160 ANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGK 239 (450)
Q Consensus 160 ~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 239 (450)
+||+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++.....+ ......|||+|+++...
T Consensus 235 dgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~----- 305 (552)
T PLN02354 235 QGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGP----- 305 (552)
T ss_pred CCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCC-----
Confidence 999999999999999999999999999999999999999889999998743221 23568999999876541
Q ss_pred CCCCCCcCCCCCC-CC-CccchhhhhhcccccccCCCCc--------ccceeEEEEeccceeccCCCCCCCccCCCCCee
Q 013075 240 SRSSAPIFPILPG-FN-DTATATAFTARIKSLHQVQVPT--------VIDENLFFTVGLGLINCSNPNSPRCQGPNGTRF 309 (450)
Q Consensus 240 ~~~~~~~~p~~p~-~~-~~~~~~~~~~~l~~l~p~~~p~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
..+..|..+. +. ......++...+.+....+.+. ..++++.+..++.. .+ +..
T Consensus 306 ---~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-g~~ 368 (552)
T PLN02354 306 ---ASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK-------------VD-GKL 368 (552)
T ss_pred ---CCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc-------------CC-ceE
Confidence 1111222211 00 0001111112222222111111 12233333322110 02 267
Q ss_pred eeeeccccccCCCchhhHHHHHhCC-CCCccCC-CCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCC
Q 013075 310 AASINNISFVFPRRNSLMQAYIQGQ-PGIFTTD-FPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSI 387 (450)
Q Consensus 310 ~~~iN~~~~~~p~~~~ll~~~~~~~-~~~~~~~-~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~ 387 (450)
.|+|||++|..|+. |+|.+.+.++ .|.++.+ ++..+|..++. .+.+.+++.++.|++|||+|+|.
T Consensus 369 ~~~iNn~s~~~p~~-P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~----------~~~~~~v~~~~~~~~VeiVi~n~-- 435 (552)
T PLN02354 369 RYALNGVSHVDPET-PLKLAEYFGVADKVFKYDTIKDNPPAKITK----------IKIQPNVLNITFRTFVEIIFENH-- 435 (552)
T ss_pred EEEECCccCCCCCC-ChHHhhhhcccCCccccCccccCCccccCc----------cccCCeeEEcCCCCEEEEEEeCC--
Confidence 89999999999988 4554544433 3555533 34444433221 13456789999999999999995
Q ss_pred CCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 388 VSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 388 ~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
+...||||||||+||||++|.|.|+++. ...+|+.||++|||+.||++||++|||+|||||
T Consensus 436 -~~~~HP~HLHGh~F~Vlg~G~G~~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG 496 (552)
T PLN02354 436 -EKSMQSWHLDGYSFFAVAVEPGTWTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAG 496 (552)
T ss_pred -CCCCCCCcCCCccEEEEeecCCCCCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCe
Confidence 3568999999999999999999998753 457899999999999999999999999999998
No 6
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-86 Score=670.39 Aligned_cols=426 Identities=51% Similarity=0.875 Sum_probs=367.0
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
++|||||++|..++|||| +.+|||||+||++|+|+|++++|.||||||+|...|++ |++|+|||+++...++|++.+|
T Consensus 81 ~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd 159 (563)
T KOG1263|consen 81 FSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPD 159 (563)
T ss_pred eEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCC
Confidence 589999999999999999 89999999999999999999889999999999999997 9999999999998888998899
Q ss_pred CceeEEEeeeecC-ChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEE
Q 013075 80 REIPILIGEWWDR-DPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFG 158 (450)
Q Consensus 80 ~e~~l~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~ 158 (450)
+|++|+|+|||++ ....+...+...+..+..+|.++|||+.+..++| .++++|++||+|||||+|+|....+.|+
T Consensus 160 ~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~ 235 (563)
T KOG1263|consen 160 KEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFS 235 (563)
T ss_pred ceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEE
Confidence 9999999999995 7777777777777777679999999999888999 5999999999999999999999999999
Q ss_pred EeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCC
Q 013075 159 VANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKG 238 (450)
Q Consensus 159 i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~ 238 (450)
|++|+|+||++||.+++|..++.|.|.|||||||+|++++.+++|+|.+..+.++.....+....++|+|.+.....+
T Consensus 236 I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s-- 313 (563)
T KOG1263|consen 236 IANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPAS-- 313 (563)
T ss_pred ECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCc--
Confidence 999999999999999999999999999999999999999999999999998776542211678999999998433111
Q ss_pred CCCCCCCcCCCCCCCCCccchhhhhhcccccc----cCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeec
Q 013075 239 KSRSSAPIFPILPGFNDTATATAFTARIKSLH----QVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASIN 314 (450)
Q Consensus 239 ~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~----p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN 314 (450)
...+..+..|..+++..+..+...++.+. +.+.|...++...+.++.+...+.. + ...+++..++||
T Consensus 314 ---~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~-----~-~~~~~~~~~siN 384 (563)
T KOG1263|consen 314 ---EKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNS-----D-NKNNGKLRASIN 384 (563)
T ss_pred ---ccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccC-----C-CCCCcEEEEEEc
Confidence 11123345555566555555556666653 5567777888777777776655431 0 023568899999
Q ss_pred cccccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCC
Q 013075 315 NISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHP 394 (450)
Q Consensus 315 ~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP 394 (450)
+.+|..|+.|.+|.+++.+.++.+.++++..||..|++++ .+.+++++.++++++|||||+|.+......||
T Consensus 385 ~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~--------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp 456 (563)
T KOG1263|consen 385 NISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG--------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHP 456 (563)
T ss_pred ceEEECCCCchhhhhhhccCCccccCccCCCCccccCCcc--------ccccceEEEeecCCEEEEEEeCCccccCCCCc
Confidence 9999999998888888888788888889999999888765 25678999999999999999999877778899
Q ss_pred cccCCCceEEEEecCCCCCCCCCC-CCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 395 MHLHGHEFYVVGSGLGNFNPSTDT-AKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 395 ~HLHGh~F~Vl~~g~G~~~~~~~~-~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
||||||.||||+.|.|+|++.++. ..+|+.+|+.||||.|||+||++|||.|||||
T Consensus 457 ~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG 513 (563)
T KOG1263|consen 457 NHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPG 513 (563)
T ss_pred cceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCc
Confidence 999999999999999999996566 78999999999999999999999999999998
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.3e-85 Score=674.63 Aligned_cols=397 Identities=27% Similarity=0.482 Sum_probs=299.6
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++||||||+ |||||+||++|+|+|++.+|+||||||||.+.|++ ||+|+|||+++++.+.|+..++
T Consensus 79 ttiHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d 157 (545)
T PLN02168 79 FLMTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPD 157 (545)
T ss_pred ccEeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCccc
Confidence 799999999999999999999 99999999999999998668999999999999996 9999999999877666776788
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGV 159 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 159 (450)
+|++|+|+||++.....+.. ....+....+++.+||||+.. ..++++|++||+|||||||+|+...+.|+|
T Consensus 158 ~e~~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~I 228 (545)
T PLN02168 158 EEYDILIGDWFYADHTVMRA-SLDNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRI 228 (545)
T ss_pred ceeeEEEEecCCCCHHHHHh-hhhcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEE
Confidence 99999999999987655433 233343345789999999963 126899999999999999999999999999
Q ss_pred eCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCC-c---eeEEEeeeeccccccCCCccEEEEEEeccCCCCC
Q 013075 160 ANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPP-A---RYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNG 235 (450)
Q Consensus 160 ~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~-g---~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~ 235 (450)
+||+|+|||+||.+++|..++.|.|++||||||+|++++.+ | +|||++.....+ ......|||+|+++...
T Consensus 229 dgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~- 303 (545)
T PLN02168 229 QDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLD- 303 (545)
T ss_pred CCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCC-
Confidence 99999999999999999999999999999999999998654 4 899999864332 23567899999875431
Q ss_pred CCCCCCCCCCcCCCCCCCCCccchhhhhh----cccccccCCCCcc--------cceeEEEEeccceeccCCCCCCCccC
Q 013075 236 KKGKSRSSAPIFPILPGFNDTATATAFTA----RIKSLHQVQVPTV--------IDENLFFTVGLGLINCSNPNSPRCQG 303 (450)
Q Consensus 236 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~~----~l~~l~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
...+.|..|...+......... .+.+..+...|.. .+.++.+...+ . .
T Consensus 304 -------~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~-----------~ 363 (545)
T PLN02168 304 -------PVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M-----------L 363 (545)
T ss_pred -------CCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c-----------c
Confidence 1111233333333322211111 2222111122211 11222111110 0 0
Q ss_pred CCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccC-CCCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEE
Q 013075 304 PNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTT-DFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVF 382 (450)
Q Consensus 304 ~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi 382 (450)
.+ +...|+|||++|..|.+|.|+ +.+.++++.+.. +++..||.. ....+++++.++.|++|||+|
T Consensus 364 ~~-g~~~~~iN~~s~~~p~~P~l~-~~~~~~~~~~~~~~~~~~p~~~------------~~~~~~~v~~~~~~~~VeiVi 429 (545)
T PLN02168 364 SS-GKLRYTINGVSFVYPGTPLKL-VDHFQLNDTIIPGMFPVYPSNK------------TPTLGTSVVDIHYKDFYHIVF 429 (545)
T ss_pred cC-ceEEEEECCCccCCCCCchhh-hhhcccccccccCCCccCCCcC------------ccccCceEEEecCCCEEEEEE
Confidence 02 267899999999999885544 444343333332 244444320 001246788999999999999
Q ss_pred EeCCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 383 QDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 383 ~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
+|.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.||++||++|||+|||||
T Consensus 430 qn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG 493 (545)
T PLN02168 430 QNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQG 493 (545)
T ss_pred eCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCe
Confidence 9953 458999999999999999999998653 457899999999999999999999999999998
No 8
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.9e-85 Score=675.38 Aligned_cols=395 Identities=28% Similarity=0.502 Sum_probs=301.4
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++|||||++ |||||+||++|+|+|++++|+||||||||...|++ ||+|+|||++++..+.|+..+|
T Consensus 82 ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d 160 (539)
T PLN02835 82 FLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPD 160 (539)
T ss_pred CcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCC
Confidence 789999999999999999999 99999999999999997678999999999999996 9999999987655555666789
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGV 159 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 159 (450)
+|++|+|+||+++...++... ...+....+++++||||+.. +.++|++||+|||||||+|....+.|+|
T Consensus 161 ~e~~l~l~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i 229 (539)
T PLN02835 161 GDFTLLVGDWYKTSHKTLQQR-LDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRI 229 (539)
T ss_pred ceEEEEeeccccCCHHHHHHH-hhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEE
Confidence 999999999999987765443 33455556899999999975 6899999999999999999999999999
Q ss_pred eCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCC
Q 013075 160 ANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGK 239 (450)
Q Consensus 160 ~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 239 (450)
+||+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++.....+ ......|||+|+++...
T Consensus 230 ~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~----- 300 (539)
T PLN02835 230 QGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTP----- 300 (539)
T ss_pred CCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCC-----
Confidence 999999999999999999999999999999999999998889999998642222 23568999999875431
Q ss_pred CCCCCCcCCCCCCCC---CccchhhhhhcccccccCCCCc--------ccceeEEEEeccceeccCCCCCCCccCCCCCe
Q 013075 240 SRSSAPIFPILPGFN---DTATATAFTARIKSLHQVQVPT--------VIDENLFFTVGLGLINCSNPNSPRCQGPNGTR 308 (450)
Q Consensus 240 ~~~~~~~~p~~p~~~---~~~~~~~~~~~l~~l~p~~~p~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
....+|..|... +.....+....+.+....+.+. ..++++.+...+.. .++ .
T Consensus 301 ---~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~g-~ 363 (539)
T PLN02835 301 ---ASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL-------------ING-K 363 (539)
T ss_pred ---CCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccc-------------cCC-e
Confidence 111122222110 1100111111122211111111 12333333221110 022 5
Q ss_pred eeeeeccccccCCCchhhHHHHHhCCCCCccCCC-CCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCC
Q 013075 309 FAASINNISFVFPRRNSLMQAYIQGQPGIFTTDF-PPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSI 387 (450)
Q Consensus 309 ~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~ 387 (450)
..|++||++|..|.. |+|.+.+.+.++.++.+. +..++ ++ ..+.+++++.+++|++|||+|+|..
T Consensus 364 ~~w~iN~~s~~~p~~-P~L~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~t~~~~~~~~~~Veivi~N~~- 429 (539)
T PLN02835 364 QRYAVNGVSYVNSDT-PLKLADYFGIPGVFSVNSIQSLPS-----------GG-PAFVATSVMQTSLHDFLEVVFQNNE- 429 (539)
T ss_pred EEEEECCcccCCCCC-ChhhhhhhcCCCccccCccccCCC-----------CC-ccccCCeEEEcCCCCEEEEEEECCC-
Confidence 789999999998888 555555555556665432 11111 10 1234578899999999999999963
Q ss_pred CCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 388 VSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 388 ~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
...||||||||+||||++|.|.|++.. ...+|+.||++||||.||++||++|||+|||||
T Consensus 430 --~~~HP~HLHGh~F~Vlg~G~g~~~~~~-~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG 489 (539)
T PLN02835 430 --KTMQSWHLDGYDFWVVGYGSGQWTPAK-RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQG 489 (539)
T ss_pred --CCCCCCCCCCccEEEEeccCCCCCccc-ccccCCCCCCccceEEeCCCCEEEEEEECcCCE
Confidence 558999999999999999999998653 446799999999999999999999999999998
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.6e-83 Score=666.61 Aligned_cols=419 Identities=31% Similarity=0.518 Sum_probs=303.5
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++||||||++|||||+||++|+|+|++ .++||||||||...|++ ||+|+|||+++.+...++ .+|
T Consensus 77 tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d 154 (574)
T PLN02191 77 LVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYD 154 (574)
T ss_pred ccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCC
Confidence 689999999999999999999999999999999999998 79999999999999996 999999999765433333 478
Q ss_pred CceeEEEeeeecCChHHHHHHhhh-cCCCCCCCCceeeCCcccCCCCCCC--------------------CceeeEEeeC
Q 013075 80 REIPILIGEWWDRDPMDVLRQALF-TGGAPNISDALTINGQPGDLYRCSS--------------------KETVRFPVEA 138 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~liNG~~~~~~~~~~--------------------~~~~~~~v~~ 138 (450)
+|++|+|+||+|+...+....... ......+++++||||+.. +.|.. ..+.+++|++
T Consensus 155 ~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~ 232 (574)
T PLN02191 155 GEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEP 232 (574)
T ss_pred eeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcC
Confidence 999999999999875543322221 111224789999999864 34421 1234799999
Q ss_pred CCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCC-ceeEEEeeeeccccccC
Q 013075 139 GETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPP-ARYYMAAHAYNTANAAF 217 (450)
Q Consensus 139 G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~-g~y~l~~~~~~~~~~~~ 217 (450)
||+|||||||+|+...+.|+|+||+|+|||+||++++|++++.|.|++||||||+|++++++ ++||||+.....+.
T Consensus 233 G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~--- 309 (574)
T PLN02191 233 NKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP--- 309 (574)
T ss_pred CCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999876 58999997644331
Q ss_pred CCccEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhccccc-ccCCCCc-ccceeEEEEeccceeccCC
Q 013075 218 DNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSL-HQVQVPT-VIDENLFFTVGLGLINCSN 295 (450)
Q Consensus 218 ~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l-~p~~~p~-~~d~~~~~~~~~~~~~~~~ 295 (450)
......|||+|.+......+ ....|..|.+.+..........+... .....|. ..+.++.+.... .
T Consensus 310 ~~~~~~ail~Y~~~~~~~~p------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~----- 377 (574)
T PLN02191 310 NTTQALTILNYVTAPASKLP------SSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN-L----- 377 (574)
T ss_pred CCCCceEEEEECCCCCCCCC------CCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc-e-----
Confidence 22345799999876542100 00112223333322221111111111 0111222 234444432211 0
Q ss_pred CCCCCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCC-CcccccCCCCCCCCcCCCCCceeEEeec
Q 013075 296 PNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVP-PIIFDYTGNVSRGLWQPRKRTKLYKLKF 374 (450)
Q Consensus 296 ~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~p~~~~~~~~~~~~~~~~~ 374 (450)
..+...|++||.+|..|..|.|++ ...+.++.+....+... +..|+..+. ..+...+.+.+++.+++
T Consensus 378 ---------~~~~~~~~~n~~s~~~p~~P~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~ 445 (574)
T PLN02191 378 ---------IDGYTKWAINNVSLVTPATPYLGS-VKYNLKLGFNRKSPPRSYRMDYDIMNP--PPFPNTTTGNGIYVFPF 445 (574)
T ss_pred ---------eCCeEEEEECcccCcCCCcchHHH-HhhccCcccccCCCcccccccccccCC--CccccccccceeEEecC
Confidence 112468999999999888855554 44444454444333221 222322221 11112245677899999
Q ss_pred CCEEEEEEEeCCCC---CCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 375 GSRVQIVFQDTSIV---SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 375 g~~v~ivi~N~~~~---~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
|++|||+|+|.... ....||||||||+||||++|.|.|++..+...+|+.||++|||++||++||++|||+|||||
T Consensus 446 ~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG 524 (574)
T PLN02191 446 NVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPG 524 (574)
T ss_pred CCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCE
Confidence 99999999996421 35789999999999999999999987544457899999999999999999999999999998
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.5e-82 Score=657.28 Aligned_cols=420 Identities=31% Similarity=0.542 Sum_probs=307.6
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++||||++++|||+|+||++|+|+|++ .++||||||||...|++ ||+|+|||+++.++..++ .+|
T Consensus 55 t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d 132 (541)
T TIGR03388 55 VVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYD 132 (541)
T ss_pred ccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-ccc
Confidence 689999999999999999999999999999999999998 79999999999999996 999999999986544455 468
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcC-CCCCCCCceeeCCcccCCCCCCC-------------------CceeeEEeeCC
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTG-GAPNISDALTINGQPGDLYRCSS-------------------KETVRFPVEAG 139 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~-~~~~~~~~~liNG~~~~~~~~~~-------------------~~~~~~~v~~G 139 (450)
+|++|+|+||+++...+......... ....+++.+||||+.. +.|.. .....++|++|
T Consensus 133 ~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 210 (541)
T TIGR03388 133 GEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPG 210 (541)
T ss_pred ceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCC
Confidence 99999999999998766544332211 1124679999999864 34421 12356899999
Q ss_pred CEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCC-ceeEEEeeeeccccccCC
Q 013075 140 ETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPP-ARYYMAAHAYNTANAAFD 218 (450)
Q Consensus 140 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~-g~y~l~~~~~~~~~~~~~ 218 (450)
++|||||||+|+...+.|+||+|+|+|||+||++++|..++.|.|++||||||+|++++.+ |+||||+.....+ ..
T Consensus 211 ~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~ 287 (541)
T TIGR03388 211 KTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PN 287 (541)
T ss_pred CEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CC
Confidence 9999999999999999999999999999999999999999999999999999999999876 4899999864432 23
Q ss_pred CccEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhccccc-ccCCCCcccceeEEEEeccceeccCCCC
Q 013075 219 NTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSL-HQVQVPTVIDENLFFTVGLGLINCSNPN 297 (450)
Q Consensus 219 ~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l-~p~~~p~~~d~~~~~~~~~~~~~~~~~~ 297 (450)
.....|||+|.++..... .+...|..|.+.+.....+....+... .....+..+|+++.+......
T Consensus 288 ~~~~~aiL~Y~~~~~~~~------p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 354 (541)
T TIGR03388 288 TPPGLTVLNYYPNSPSRL------PPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNK------- 354 (541)
T ss_pred CccEEEEEEECCCCCCCC------CCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcc-------
Confidence 346889999987544110 001112233344332211111111111 112234556777665433211
Q ss_pred CCCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCC-CCCCcccccCCCCCCCCcCCCCCceeEEeecCC
Q 013075 298 SPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFP-PVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGS 376 (450)
Q Consensus 298 ~~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 376 (450)
......|++||.+|..|..| +|.+...+..+++....+ ...+..|+.... +.. ...+.|++++.+++|+
T Consensus 355 -------~~~~~~~~~n~~s~~~p~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~ 424 (541)
T TIGR03388 355 -------INGYTKWAINNVSLTLPHTP-YLGSLKYNLLNAFDQKPPPENYPRDYDIFKP-PPN-PNTTTGNGIYRLKFNT 424 (541)
T ss_pred -------cCceEEEEECcccCCCCCcc-HHHHHhhcCCccccCCCCcccccccccccCC-Ccc-cccccCceEEEecCCC
Confidence 11246799999999988884 544444343333332211 111112211110 011 1234577889999999
Q ss_pred EEEEEEEeCCCC---CCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 377 RVQIVFQDTSIV---SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 377 ~v~ivi~N~~~~---~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
+|||||+|...+ ....||||||||+||||++|.|.|++..+...+|+.||++|||++||++||++|||+|||||
T Consensus 425 ~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG 501 (541)
T TIGR03388 425 TVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPG 501 (541)
T ss_pred eEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCe
Confidence 999999996532 25689999999999999999999987655567999999999999999999999999999998
No 11
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.4e-81 Score=649.97 Aligned_cols=408 Identities=25% Similarity=0.418 Sum_probs=302.5
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeC-CceeeeeeccChhhhhcceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIE-DQEGTLWWHAHSRWLRATVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|..++||||+|++|||||+||++|+|+|+++ +++||||||||...|+.||+|+|||+++.+.+ + .+|
T Consensus 62 ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~--~-~~d 138 (538)
T TIGR03390 62 VTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPP--Y-KYD 138 (538)
T ss_pred ceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccC--C-Ccc
Confidence 7899999999999999999999999999999999999974 58999999999999998999999999876443 3 468
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCC-CCCCCCceeeCCcccCCCCCC-------CCceeeEEeeCCCEEEEEEEecCC
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGG-APNISDALTINGQPGDLYRCS-------SKETVRFPVEAGETILLRIINSAM 151 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~-~~~~~~~~liNG~~~~~~~~~-------~~~~~~~~v~~G~~~rlRliN~~~ 151 (450)
+|++|+|+||+++...++......... ...+++++||||+..... |. .+..+.++|++||+|||||||+|+
T Consensus 139 ~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~-~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~ 217 (538)
T TIGR03390 139 DERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKS-FYAQINPSGSCMLPVIDVEPGKTYRLRFIGATA 217 (538)
T ss_pred CcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCcccccc-ccccccCCCCCcceEEEECCCCEEEEEEEccCC
Confidence 899999999999988876654433221 134678999999964321 10 123578999999999999999999
Q ss_pred CceEEEEEeCcc-eEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCC-------CceeEEEeeeeccccccCCCccEE
Q 013075 152 NQEHFFGVANHK-LTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQP-------PARYYMAAHAYNTANAAFDNTTTT 223 (450)
Q Consensus 152 ~~~~~~~i~gh~-~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~-------~g~y~l~~~~~~~~~~~~~~~~~~ 223 (450)
...+.|+|+||+ |+|||+||++++|+.++.|.|++||||||+|+++++ +|+||||+.....+ +.....
T Consensus 218 ~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~ 293 (538)
T TIGR03390 218 LSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGY 293 (538)
T ss_pred ceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEE
Confidence 999999999999 999999999999999999999999999999999975 48999999764322 234679
Q ss_pred EEEEeccCCCCCCCCCCCCCCCcCCCCCCCCC-ccchhhhhhcccccccC-----CCCcccceeEEEEeccceeccCCCC
Q 013075 224 AILEYKSAPFNGKKGKSRSSAPIFPILPGFND-TATATAFTARIKSLHQV-----QVPTVIDENLFFTVGLGLINCSNPN 297 (450)
Q Consensus 224 ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~-~~~~~~~~~~l~~l~p~-----~~p~~~d~~~~~~~~~~~~~~~~~~ 297 (450)
|||+|+++..+ ..+..|..+.... ..+..+....|+++.+. +.+..+|+++.+.+++....
T Consensus 294 aiL~Y~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----- 360 (538)
T TIGR03390 294 AVLRYRSDKAS--------KLPSVPETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----- 360 (538)
T ss_pred EEEEeCCCCCC--------CCCCCCCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc-----
Confidence 99999865431 1111111221111 01111122344555432 22345788877777653210
Q ss_pred CCCccCCCCCeeeeeeccccccC--CCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCCCCCCcCCCCCceeEEeecC
Q 013075 298 SPRCQGPNGTRFAASINNISFVF--PRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFG 375 (450)
Q Consensus 298 ~~~~~~~~~~~~~~~iN~~~~~~--p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g 375 (450)
.++...|++||++|.. |..|.|+.. +.+. . +..++ |+... .. .......+++.++.|
T Consensus 361 -------~~g~~~~~~N~~s~~~~~~~~P~L~~~-~~~~---~----~~~~~--~~~~~--~~--~~~~~~~~~~~~~~~ 419 (538)
T TIGR03390 361 -------LNGRVAWLQNGLSWTESVRQTPYLVDI-YENG---L----PATPN--YTAAL--AN--YGFDPETRAFPAKVG 419 (538)
T ss_pred -------cCCeEEEEECCcccCCCCCCCchHHHH-hcCC---C----CcCCC--ccccc--cc--CCcCcCceEEEcCCC
Confidence 1236789999999985 667454443 3211 0 00111 11000 00 011234567899999
Q ss_pred CEEEEEEEeCCCC-----CCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeC----------CCCEE
Q 013075 376 SRVQIVFQDTSIV-----SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTP----------PGGWV 440 (450)
Q Consensus 376 ~~v~ivi~N~~~~-----~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp----------~~g~~ 440 (450)
++|||+|+|.... ....||||||||+||||++|.|.|++......+|+.||++|||++|| ++||+
T Consensus 420 ~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~ 499 (538)
T TIGR03390 420 EVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWR 499 (538)
T ss_pred CEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceE
Confidence 9999999996421 25789999999999999999999987654457889999999999996 78999
Q ss_pred EEEEEccCCC
Q 013075 441 AVRFVAENPG 450 (450)
Q Consensus 441 viRf~adNPG 450 (450)
+|||+|||||
T Consensus 500 ~ir~~~dNPG 509 (538)
T TIGR03390 500 AWRIRVTNPG 509 (538)
T ss_pred EEEEEcCCCe
Confidence 9999999998
No 12
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.4e-81 Score=650.64 Aligned_cols=419 Identities=31% Similarity=0.526 Sum_probs=308.8
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||++|.+++||||++++|||+|+||++|+|+|++ +++||||||||...|++ ||+|+|||+++.+++.|+ .+|
T Consensus 78 ~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d 155 (566)
T PLN02604 78 VAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYD 155 (566)
T ss_pred CCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccC
Confidence 689999999999999999999999999999999999997 89999999999999996 999999999887555555 468
Q ss_pred CceeEEEeeeecCChHHHHHHhhhc-CCCCCCCCceeeCCcccCCCCCCC-----------------CceeeEEeeCCCE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFT-GGAPNISDALTINGQPGDLYRCSS-----------------KETVRFPVEAGET 141 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~-~~~~~~~~~~liNG~~~~~~~~~~-----------------~~~~~~~v~~G~~ 141 (450)
+|.+|+|+||+++...++....... .....++++++|||++. +.|+. ..++.++|++||+
T Consensus 156 ~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 233 (566)
T PLN02604 156 YDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKT 233 (566)
T ss_pred cceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCE
Confidence 8999999999999887665543221 11224789999999864 44531 1446899999999
Q ss_pred EEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCc-eeEEEeeeeccccccCCCc
Q 013075 142 ILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPA-RYYMAAHAYNTANAAFDNT 220 (450)
Q Consensus 142 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g-~y~l~~~~~~~~~~~~~~~ 220 (450)
|||||||+|+.+.++|+||||+|+|||+||++++|++++.|.|++||||||+|++++++| +||||+.....+ .+..
T Consensus 234 ~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~---~~~~ 310 (566)
T PLN02604 234 YRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRN---NTTP 310 (566)
T ss_pred EEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCC---CCCc
Confidence 999999999999999999999999999999999999999999999999999999998775 899998754333 1345
Q ss_pred cEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhccccccc--CCCCcccceeEEEEeccceeccCCCCC
Q 013075 221 TTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLHQ--VQVPTVIDENLFFTVGLGLINCSNPNS 298 (450)
Q Consensus 221 ~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~p--~~~p~~~d~~~~~~~~~~~~~~~~~~~ 298 (450)
.++|||+|++..... ..+...|..+.+++..........+..+.+ ...+..+|+++.+....+.
T Consensus 311 ~~~aIL~Y~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-------- 376 (566)
T PLN02604 311 PGLAIFNYYPNHPRR------SPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNE-------- 376 (566)
T ss_pred ceeEEEEECCCCCCC------CCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccc--------
Confidence 789999998643211 001111111223222111001111111111 1233456666665433211
Q ss_pred CCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccC---CCCCCCCcCCCCCceeEEeecC
Q 013075 299 PRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYT---GNVSRGLWQPRKRTKLYKLKFG 375 (450)
Q Consensus 299 ~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~p~~~~~~~~~~~~~~~~~g 375 (450)
.++.+.|+|||.+|..|..| +|.+.+...++.++.+. ++..+++. ..........+.+.+++.++.|
T Consensus 377 ------~~~~~~w~in~~~~~~p~~p-~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 446 (566)
T PLN02604 377 ------VNGYRRWSVNNVSFNLPHTP-YLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFN 446 (566)
T ss_pred ------cCCeEEEEECcccCCCCCCc-hhHhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCC
Confidence 12257899999999988884 45444444455554221 12211100 0000000112346778999999
Q ss_pred CEEEEEEEeCCCC---CCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 376 SRVQIVFQDTSIV---SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 376 ~~v~ivi~N~~~~---~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
++|||+|+|...+ ....||||||||+||||++|.|.|++.++...+|+.||++|||++||++||++|||+|||||
T Consensus 447 ~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG 524 (566)
T PLN02604 447 STVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPG 524 (566)
T ss_pred CeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCe
Confidence 9999999996432 35679999999999999999999987766678999999999999999999999999999998
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=6.8e-63 Score=510.10 Aligned_cols=348 Identities=25% Similarity=0.394 Sum_probs=250.5
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||+++.. +|||||++|||+|+||++|+|+|++ .++||||||||...|++ ||+|+|||++++..+ + .+|
T Consensus 98 tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p--~-~~D 171 (587)
T TIGR01480 98 TSIHWHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDP--V-RAD 171 (587)
T ss_pred ceEEcCCCcCCc--cccCCCcccccccCCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCcccc--C-CCC
Confidence 689999999864 5999999999999999999999998 78999999999999986 999999999875443 3 468
Q ss_pred CceeEEEeeeecCChHHHHHHhhh---------------------cCCC----------------CCC------CCceee
Q 013075 80 REIPILIGEWWDRDPMDVLRQALF---------------------TGGA----------------PNI------SDALTI 116 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~---------------------~~~~----------------~~~------~~~~li 116 (450)
+|++|+|+||++....+++..+.. .|.. ..+ ...+||
T Consensus 172 ~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~Li 251 (587)
T TIGR01480 172 REHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLM 251 (587)
T ss_pred ceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEE
Confidence 999999999998877666543221 0100 000 113788
Q ss_pred CCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEe
Q 013075 117 NGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTA 196 (450)
Q Consensus 117 NG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~ 196 (450)
||+.. ...+++.+++|++|||||||+|+.+.+.|+|+||+|+||++||++++|..++.|.|++||||||+|++
T Consensus 252 NG~~~-------~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~ 324 (587)
T TIGR01480 252 NGTTP-------AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEP 324 (587)
T ss_pred cCccC-------CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEec
Confidence 98753 23467899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCC-C-Cc------------------
Q 013075 197 DQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGF-N-DT------------------ 256 (450)
Q Consensus 197 ~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~-~-~~------------------ 256 (450)
++ .|.|+|.+..... .....++|++.+......+ .+... ++...... . ..
T Consensus 325 ~~-~g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p--~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 394 (587)
T TIGR01480 325 TG-DDAFTIFAQDSDR------TGYARGTLAVRLGLTAPVP--ALDPR-PLLTMKDMGMGGMHHGMDHSKMSMGGMPGMD 394 (587)
T ss_pred CC-CceEEEEEEecCC------CceEEEEEecCCCCCCCCC--CCCCc-cccChhhcccccccccccccccccCcccccC
Confidence 74 4899999976433 2467888887654210000 00000 00000000 0 00
Q ss_pred -------------------------------------------------------cchhhhhhcccccccCCCCccccee
Q 013075 257 -------------------------------------------------------ATATAFTARIKSLHQVQVPTVIDEN 281 (450)
Q Consensus 257 -------------------------------------------------------~~~~~~~~~l~~l~p~~~p~~~d~~ 281 (450)
........+|+.+.+...+..++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~ 474 (587)
T TIGR01480 395 MSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGRE 474 (587)
T ss_pred ccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCce
Confidence 0000001112221111112234444
Q ss_pred EEEEeccceeccCCCCCCCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCCCCCCc
Q 013075 282 LFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLW 361 (450)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~ 361 (450)
+.+.+.. +..++.|+|||..|..
T Consensus 475 ~~~~L~g----------------~m~~~~wtiNG~~~~~----------------------------------------- 497 (587)
T TIGR01480 475 IELHLTG----------------NMERFAWSFDGEAFGL----------------------------------------- 497 (587)
T ss_pred EEEEEcC----------------CCceeEEEECCccCCC-----------------------------------------
Confidence 4444321 2236789999976631
Q ss_pred CCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEE
Q 013075 362 QPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVA 441 (450)
Q Consensus 362 ~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~v 441 (450)
...+.++.|++|+|.|.|.+ .+.||||||||.|+|+..+ |. .+++|||+.|+|++.+.
T Consensus 498 -----~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 498 -----KTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRS 555 (587)
T ss_pred -----CCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEE
Confidence 12467999999999999965 4699999999999998642 22 24578999999999999
Q ss_pred EEEEccCCC
Q 013075 442 VRFVAENPG 450 (450)
Q Consensus 442 iRf~adNPG 450 (450)
++|+|||||
T Consensus 556 ~~f~ad~pG 564 (587)
T TIGR01480 556 FRVTADALG 564 (587)
T ss_pred EEEECCCCe
Confidence 999999998
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=4.7e-57 Score=463.46 Aligned_cols=193 Identities=20% Similarity=0.273 Sum_probs=158.4
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccCh----hhhhc-ceeEEEEEecCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHS----RWLRA-TVYGALIVYPRMGSPYPF 75 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~----~~~~~-Gl~G~liV~~~~~~~~~~ 75 (450)
|+|||||+++.+. |||+| ||+|+||++|+|+|++++++||||||||. ..|+. ||+|+|||+++.+.+.++
T Consensus 99 ttiHwHGl~~~~~--~DG~p---q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~l 173 (523)
T PRK10965 99 TTLHWHGLEVPGE--VDGGP---QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGL 173 (523)
T ss_pred ccEEcccccCCCc--cCCCC---CCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCC
Confidence 7999999999875 99986 99999999999999985568999999997 46664 999999999987654333
Q ss_pred CC--CCCceeEEEeeeecCChHHHHHHhhh-cCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCC
Q 013075 76 PM--PKREIPILIGEWWDRDPMDVLRQALF-TGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMN 152 (450)
Q Consensus 76 ~~--~~~e~~l~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~ 152 (450)
+. ..+|++|+|+||++....++...... .......++.++|||+.. +.+.++ +++|||||||+|+.
T Consensus 174 p~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~ 242 (523)
T PRK10965 174 PKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNA 242 (523)
T ss_pred cccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCC
Confidence 32 34689999999998766543221110 111234678999999975 667775 67999999999999
Q ss_pred ceEEEEE-eCcceEEEEeCCCcc-CceeecEEEecCCCeEEEEEEeCCCCceeEEEeeee
Q 013075 153 QEHFFGV-ANHKLTVVGVDTSYT-KPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAY 210 (450)
Q Consensus 153 ~~~~~~i-~gh~~~via~DG~~v-~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~ 210 (450)
+.++|++ ++|+|+|||+||+++ +|..++.|.|+|||||||+|++++ .++|.+.+...
T Consensus 243 r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~ 301 (523)
T PRK10965 243 RSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLVTLPV 301 (523)
T ss_pred ceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEEEecc
Confidence 9999998 899999999999987 899999999999999999999985 47899988644
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1e-54 Score=442.42 Aligned_cols=327 Identities=16% Similarity=0.223 Sum_probs=222.7
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhh----hh-cceeEEEEEecCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRW----LR-ATVYGALIVYPRMGSPYPF 75 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~ 75 (450)
|+|||||+++.+. .+||++ |+|+||++|+|+|++.+++||||||||.++ |+ +||+|+|||+++.+.+.++
T Consensus 99 ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~ 173 (471)
T PRK10883 99 VSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPI 173 (471)
T ss_pred CceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCC
Confidence 7899999999876 577764 679999999999988667999999999765 55 4999999999987654444
Q ss_pred CC--CCCceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCc
Q 013075 76 PM--PKREIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQ 153 (450)
Q Consensus 76 ~~--~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~ 153 (450)
+. ..+|++|+|+||+.+........ .......+++.++|||+.. +.++|++| +|||||||+|+.+
T Consensus 174 p~~~~~~d~~l~l~D~~~~~~g~~~~~--~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~ 240 (471)
T PRK10883 174 PNHYGVDDFPVIIQDKRLDNFGTPEYN--EPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNAR 240 (471)
T ss_pred cccCCCcceeEEeeeeeeccCCCcccc--ccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCc
Confidence 32 34589999999988765432211 1111235788999999975 78999875 8999999999999
Q ss_pred eEEEEE-eCcceEEEEeCCCcc-CceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeecccc----ccCCCc---cEEE
Q 013075 154 EHFFGV-ANHKLTVVGVDTSYT-KPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTAN----AAFDNT---TTTA 224 (450)
Q Consensus 154 ~~~~~i-~gh~~~via~DG~~v-~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~----~~~~~~---~~~a 224 (450)
.+.|+| ++|+|+|||+||+++ +|..++.|.|+|||||||+|++++ .+.+.|.+....... ..+... ....
T Consensus 241 ~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (471)
T PRK10883 241 RYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTL 319 (471)
T ss_pred eEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccce
Confidence 999999 899999999997776 899999999999999999999985 356666653211000 000000 0112
Q ss_pred EEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhcccccccCCCCcccceeEEEEeccceeccCCCCCCCccCC
Q 013075 225 ILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLHQVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGP 304 (450)
Q Consensus 225 il~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
+++........ .....+| ..+.+ +...+..+.++..+.++.
T Consensus 320 ~~~~~~~~~~~------~~~~~~p---------------~~l~~--~~~~~~~~~~~~~~~l~~---------------- 360 (471)
T PRK10883 320 VLTLRPTGLLP------LVTDNLP---------------MRLLP--DEIMEGSPIRSREISLGD---------------- 360 (471)
T ss_pred eEEEEcccccc------CCCCcCC---------------hhhcC--CCCCCCCCcceEEEEecC----------------
Confidence 22222110000 0000000 01111 001112233344333321
Q ss_pred CCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEe
Q 013075 305 NGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQD 384 (450)
Q Consensus 305 ~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N 384 (450)
. .|.|||++|.... ..+.+++|++++|.|.|
T Consensus 361 --~--~~~INg~~~~~~~---------------------------------------------~~~~~~~g~~e~W~~~n 391 (471)
T PRK10883 361 --D--LPGINGALWDMNR---------------------------------------------IDVTAQQGTWERWTVRA 391 (471)
T ss_pred --C--cCccCCcccCCCc---------------------------------------------ceeecCCCCEEEEEEEC
Confidence 1 3569999885321 13568999999999988
Q ss_pred CCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 385 TSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 385 ~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
. +.||||||||.||||+++..... .....|||||.|+ +.+.|+++++++|
T Consensus 392 ~-----~~HP~HlHg~~FqVl~~~G~~~~---------~~~~gwkDTV~v~--~~v~i~~~f~~~~ 441 (471)
T PRK10883 392 D-----MPQAFHIEGVMFLIRNVNGAMPF---------PEDRGWKDTVWVD--GQVELLVYFGQPS 441 (471)
T ss_pred C-----CCcCEeECCccEEEEEecCCCCC---------ccccCcCcEEEcC--CeEEEEEEecCCC
Confidence 3 47999999999999998532111 1123589999996 4699999999875
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-45 Score=377.87 Aligned_cols=337 Identities=26% Similarity=0.340 Sum_probs=232.3
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCCCCCCCCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSPYPFPMPK 79 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~ 79 (450)
|+|||||+..+ +.|||++..+||++.||++++|.|.. +++||||||+|.++|.. ||+|++||++..+.+. .+|
T Consensus 86 t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d 159 (451)
T COG2132 86 TSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVD 159 (451)
T ss_pred ceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCC
Confidence 79999998877 45999999999999999999999986 77889999999999985 9999999999976543 567
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEE
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGV 159 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 159 (450)
++.++++.+|+.......... .........+..+|||+. .++...++++|||||+|++....+.+++
T Consensus 160 ~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~~-----------~p~~~~~~g~~rlRl~n~~~~~~~~~~~ 226 (451)
T COG2132 160 DEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGAI-----------LPFKAVPGGVVRLRLLNAGNARTYHLAL 226 (451)
T ss_pred ceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCCc-----------cceeecCCCeEEEEEEecCCceEEEEEe
Confidence 888888899987655443322 122233478899999965 3445555667999999999888888999
Q ss_pred eCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCC
Q 013075 160 ANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGK 239 (450)
Q Consensus 160 ~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 239 (450)
.++.|+||++||.+++|..++.+.|+|||||||+|++.+ .+.+.+.+... +.. ....+.........
T Consensus 227 ~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~-~~~-----~~~~~~~~~~~~~~------ 293 (451)
T COG2132 227 GGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGE-DMP-----DTLKGFRAPNPILT------ 293 (451)
T ss_pred cCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccc-cCC-----ceeeeeeccccccc------
Confidence 999999999999999999999999999999999999995 57788877641 110 11122221111000
Q ss_pred CCCCCCcCCC---CCCCCCccchhhhhhcccccccCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeeccc
Q 013075 240 SRSSAPIFPI---LPGFNDTATATAFTARIKSLHQVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNI 316 (450)
Q Consensus 240 ~~~~~~~~p~---~p~~~~~~~~~~~~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~ 316 (450)
.....+.. .+.. +. ........++.....+. ...+..+.+.. ......|.+|++
T Consensus 294 --~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~------------------~~~~~~~~~n~~ 350 (451)
T COG2132 294 --PSYPVLNGRVGAPTG-DM-ADHAPVGLLVTILVEPG-PNRDTDFHLIG------------------GIGGYVWAINGK 350 (451)
T ss_pred --cccccccccccCCCc-ch-hhccccccchhhcCCCc-ccccccchhhc------------------ccccccccccCc
Confidence 00000000 0000 00 00000000000000000 00011110100 112346677776
Q ss_pred cccCCCchhhHHHHHhCCCCCccCCCCCCCCcccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCcc
Q 013075 317 SFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMH 396 (450)
Q Consensus 317 ~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~H 396 (450)
.|.. ....+.++.|++++|+|.|.. .+.||||
T Consensus 351 ~~~~---------------------------------------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~H 382 (451)
T COG2132 351 AFDD---------------------------------------------NRVTLIAKAGTRERWVLTNDT---PMPHPFH 382 (451)
T ss_pred cCCC---------------------------------------------CcCceeecCCCEEEEEEECCC---CCccCeE
Confidence 5531 123578899999999999964 4799999
Q ss_pred cCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEccCCC
Q 013075 397 LHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 397 LHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~adNPG 450 (450)
|||+.|+|++.+ . ..-...+.||||+.+.+++.++|||.+|+||
T Consensus 383 lHg~~F~v~~~~-~---------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g 426 (451)
T COG2132 383 LHGHFFQVLSGD-A---------PAPGAAPGWKDTVLVAPGERLLVRFDADYPG 426 (451)
T ss_pred EcCceEEEEecC-C---------CcccccCccceEEEeCCCeEEEEEEeCCCCC
Confidence 999999999986 1 1223467899999999999999999999998
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=9.8e-39 Score=308.89 Aligned_cols=208 Identities=22% Similarity=0.236 Sum_probs=164.1
Q ss_pred eeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChh----hhhc-ceeEEEEEecCCCCCCCCC
Q 013075 2 SLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSR----WLRA-TVYGALIVYPRMGSPYPFP 76 (450)
Q Consensus 2 ~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~----~~~~-Gl~G~liV~~~~~~~~~~~ 76 (450)
++||||. .++||+++++| |+||++|+|+|.+ +++||||||||.+ .|.+ ||+|+|||++++..+
T Consensus 84 ~~h~H~~-----~~~dg~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~---- 151 (311)
T TIGR02376 84 NVDFHAA-----TGALGGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP---- 151 (311)
T ss_pred eeeecCC-----CccCCCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----
Confidence 5778875 25899998888 9999999999987 7899999999954 4664 999999999875422
Q ss_pred CCCCceeEEEeeeecCChHHHHHHhh--hcCCCCCCCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCce
Q 013075 77 MPKREIPILIGEWWDRDPMDVLRQAL--FTGGAPNISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQE 154 (450)
Q Consensus 77 ~~~~e~~l~l~d~~~~~~~~~~~~~~--~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~ 154 (450)
..|+|++|+++||+++.......... .......+++.++|||+...+ .+.+.+++|+++||||||+|....
T Consensus 152 ~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~ 224 (311)
T TIGR02376 152 EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRD 224 (311)
T ss_pred CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCC
Confidence 56899999999999865432110000 000012467899999995421 145789999999999999999899
Q ss_pred EEEEEeCcceEEEEeCCCccCce--eecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCC
Q 013075 155 HFFGVANHKLTVVGVDTSYTKPF--PTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAP 232 (450)
Q Consensus 155 ~~~~i~gh~~~via~DG~~v~P~--~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~ 232 (450)
+.|+++||.+++|+.||+++.|. .++.+.|+||||+||+|++++ +|.|+++++.+.... .....|+|.|++..
T Consensus 225 ~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 225 SRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 99999999999999999999764 489999999999999999996 799999998654321 23478999998754
Q ss_pred C
Q 013075 233 F 233 (450)
Q Consensus 233 ~ 233 (450)
.
T Consensus 300 ~ 300 (311)
T TIGR02376 300 N 300 (311)
T ss_pred C
Confidence 3
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.97 E-value=2.6e-31 Score=233.73 Aligned_cols=150 Identities=33% Similarity=0.600 Sum_probs=124.6
Q ss_pred CceeEEEeeeecCChHHHHHHhhhcCC----CCCCCCceeeCCcccCCCCCC-----CCceeeEEeeCCCEEEEEEEecC
Q 013075 80 REIPILIGEWWDRDPMDVLRQALFTGG----APNISDALTINGQPGDLYRCS-----SKETVRFPVEAGETILLRIINSA 150 (450)
Q Consensus 80 ~e~~l~l~d~~~~~~~~~~~~~~~~~~----~~~~~~~~liNG~~~~~~~~~-----~~~~~~~~v~~G~~~rlRliN~~ 150 (450)
+|++|+|+||||+....++..+...+. .+.++++++|||+.. +.|+ ....+.+.+++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 589999999999998888775554432 267999999999975 5554 24679999999999999999999
Q ss_pred CCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEecc
Q 013075 151 MNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKS 230 (450)
Q Consensus 151 ~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~ 230 (450)
+...+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.....+..........|||+|++
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999878999999973222222334567899999986
Q ss_pred C
Q 013075 231 A 231 (450)
Q Consensus 231 ~ 231 (450)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 3
No 19
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.91 E-value=3.2e-25 Score=183.62 Aligned_cols=69 Identities=49% Similarity=0.938 Sum_probs=63.5
Q ss_pred CeeeccCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEEeCCceeeeeeccChhhhh-cceeEEEEEecCC
Q 013075 1 MSLFRHGVHQTRNPWADGPEYVTQCPIQPGRSYTYRFTIEDQEGTLWWHAHSRWLR-ATVYGALIVYPRM 69 (450)
Q Consensus 1 t~iH~HG~~~~~~~~~DGv~~~tq~~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 69 (450)
++|||||+++...+||||+++++||+|+||++|+|+|++++++||||||||.+.|. +||+|+|||++++
T Consensus 48 ~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 48 TSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp BSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred cccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 58999999999999999999999999999999999999955699999999999986 5999999999874
No 20
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.76 E-value=1e-18 Score=150.15 Aligned_cols=83 Identities=47% Similarity=0.866 Sum_probs=73.1
Q ss_pred CCCceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEE
Q 013075 364 RKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVR 443 (450)
Q Consensus 364 ~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viR 443 (450)
+.+...+.++.|++|||+|+|.+ ...||||||||+|+||+++.+.++.. ....+++.+|.||||+.|+++||++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 45778999999999999999964 45999999999999999987665443 345678889999999999999999999
Q ss_pred EEccCCC
Q 013075 444 FVAENPG 450 (450)
Q Consensus 444 f~adNPG 450 (450)
|++||||
T Consensus 106 ~~~~~~G 112 (138)
T PF07731_consen 106 FRADNPG 112 (138)
T ss_dssp EEETSTE
T ss_pred EEeecce
Confidence 9999998
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.48 E-value=4.1e-14 Score=121.67 Aligned_cols=61 Identities=25% Similarity=0.470 Sum_probs=46.2
Q ss_pred eeccCCCCCCCCCCCCCCCcccCCCCCC--------CeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEe
Q 013075 3 LFRHGVHQTRNPWADGPEYVTQCPIQPG--------RSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVY 66 (450)
Q Consensus 3 iH~HG~~~~~~~~~DGv~~~tq~~i~pg--------~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~ 66 (450)
||+||......+-|||++.++||+|.|+ .+|+|+| .++||||||||..++++ ||+|+|||+
T Consensus 79 I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f---~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 79 ISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHF---STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEEC---CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 3444433333334899999999999884 3455555 48999999999999986 999999996
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.26 E-value=9.7e-10 Score=106.86 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=129.7
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCC-ceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMN-QEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R 189 (450)
.+.+++||+.. .|.+++++|++++++|.|.... ....++++++. +.||... ...|.||++
T Consensus 47 ~~~~~~nG~~p---------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSVP---------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCccc---------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 45688999852 4899999999999999998632 46678888763 4577521 234899999
Q ss_pred EEEEEEeCCCCceeEEEeeeecc-ccccCCCccEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhcccc
Q 013075 190 TNVLLTADQPPARYYMAAHAYNT-ANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKS 268 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~~~~-~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~ 268 (450)
+.+.++++ .+|.||.+++.... .......+ .+.|..+.... .| ..... +...++.
T Consensus 108 ~ty~F~~~-~~Gty~YH~H~~~~~~~q~~~Gl--~G~liV~~~~~-------------~~---~~d~e-----~~l~l~d 163 (311)
T TIGR02376 108 ATLRFKAT-RPGAFVYHCAPPGMVPWHVVSGM--NGAIMVLPREG-------------LP---EYDKE-----YYIGESD 163 (311)
T ss_pred EEEEEEcC-CCEEEEEEcCCCCchhHHhhcCc--ceEEEeeccCC-------------Cc---Cccee-----EEEeeee
Confidence 99999998 47999999985321 00011122 33333332111 01 00000 0000111
Q ss_pred cccCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCc
Q 013075 269 LHQVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPI 348 (450)
Q Consensus 269 l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~ 348 (450)
+.-.... .....+ ......+. .... -.+++||+....
T Consensus 164 ~~~~~~~-~~~~~~--~~~~~~~~----------~~~~--~~~~iNG~~~~~---------------------------- 200 (311)
T TIGR02376 164 LYTPKDE-GEGGAY--EDDVAAMR----------TLTP--THVVFNGAVGAL---------------------------- 200 (311)
T ss_pred Eeccccc-cccccc--cchHHHHh----------cCCC--CEEEECCccCCC----------------------------
Confidence 0000000 000000 00000000 0011 134577763310
Q ss_pred ccccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCc
Q 013075 349 IFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPR 428 (450)
Q Consensus 349 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~ 428 (450)
...+.++.|++++|.|.|.+ ....+.||++|++|++|.. .|.+ ..++.
T Consensus 201 ------------------~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~-DG~~-----------~~~~~ 248 (311)
T TIGR02376 201 ------------------TGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWV-TGKF-----------ANPPN 248 (311)
T ss_pred ------------------CCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEE-CCcc-----------cCCCC
Confidence 01246788999999999975 3456899999999999998 3432 22322
Q ss_pred --cceEEeCCCCEEEEEEEccCCC
Q 013075 429 --RNTIGTPPGGWVAVRFVAENPG 450 (450)
Q Consensus 429 --RDTv~vp~~g~~viRf~adNPG 450 (450)
.||+.|.||+-+.|-|+++.||
T Consensus 249 ~~~~~~~i~PG~R~dv~v~~~~pG 272 (311)
T TIGR02376 249 RDVETWFIPGGSAAAALYTFEQPG 272 (311)
T ss_pred CCcceEEECCCceEEEEEEeCCCe
Confidence 6999999999999999999987
No 23
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.88 E-value=1.9e-07 Score=97.99 Aligned_cols=231 Identities=18% Similarity=0.177 Sum_probs=131.2
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEE-EeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVV-GVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..+++||+.. .|.|+++.|+++++++.|--. ....++.+|-...-- ..||.+ .+..-.|.||+.
T Consensus 22 ~~~~~~NG~~P---------GP~i~~~~GD~v~v~v~N~l~-~~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s 87 (539)
T TIGR03389 22 KSILTVNGKFP---------GPTLYAREGDTVIVNVTNNVQ-YNVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQS 87 (539)
T ss_pred eEEEEECCccc---------CCEEEEEcCCEEEEEEEeCCC-CCeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCe
Confidence 35799999853 489999999999999999975 344455555432211 257753 233446899999
Q ss_pred EEEEEEeCCCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhccccc
Q 013075 190 TNVLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSL 269 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l 269 (450)
+...+++.+.+|.||.+++.... ...+.+ ++| ..+..+ .. .|. +....... ..|...
T Consensus 88 ~~Y~f~~~~~~GT~WYHsH~~~~----~~Gl~G-~lI-V~~~~~---------~~--~~~-~~~d~e~~-----l~l~Dw 144 (539)
T TIGR03389 88 YVYNFTITGQRGTLWWHAHISWL----RATVYG-AIV-ILPKPG---------VP--YPF-PKPDREVP-----IILGEW 144 (539)
T ss_pred EEEEEEecCCCeeEEEecCchhh----hccceE-EEE-EcCCCC---------CC--CCC-CCCCceEE-----EEeccc
Confidence 99999986457999999986321 112222 222 222211 00 000 00000000 000000
Q ss_pred ccCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCcc
Q 013075 270 HQVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPII 349 (450)
Q Consensus 270 ~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~ 349 (450)
.-......... . +..+ . .+. ..-.+.|||+...... ++
T Consensus 145 ~~~~~~~~~~~-~-~~~~--~------------~~~-~~d~~liNG~~~~~~~----------------~~--------- 182 (539)
T TIGR03389 145 WNADVEAVINQ-A-NQTG--G------------APN-VSDAYTINGHPGPLYN----------------CS--------- 182 (539)
T ss_pred ccCCHHHHHHH-H-HhcC--C------------CCC-ccceEEECCCcCCCCC----------------CC---------
Confidence 00000000000 0 0000 0 000 0013457776331000 00
Q ss_pred cccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 013075 350 FDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRR 429 (450)
Q Consensus 350 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~R 429 (450)
......+.++.|++++|.|+|.+. ...+-|||+||.|.||+.. |. +..|...
T Consensus 183 --------------~~~~~~i~v~~G~~~RlRlINa~~--~~~~~~~idgH~~~VIa~D-G~-----------~~~P~~~ 234 (539)
T TIGR03389 183 --------------SKDTFKLTVEPGKTYLLRIINAAL--NDELFFAIANHTLTVVEVD-AT-----------YTKPFKT 234 (539)
T ss_pred --------------CCCceEEEECCCCEEEEEEEeccC--CceEEEEECCCeEEEEEeC-Cc-----------ccCceEe
Confidence 011246899999999999999763 3468899999999999973 32 2357788
Q ss_pred ceEEeCCCCEEEEEEEccC
Q 013075 430 NTIGTPPGGWVAVRFVAEN 448 (450)
Q Consensus 430 DTv~vp~~g~~viRf~adN 448 (450)
|++.|.+|+-+-|-+++++
T Consensus 235 ~~l~i~~GqRydVlv~a~~ 253 (539)
T TIGR03389 235 KTIVIGPGQTTNVLLTADQ 253 (539)
T ss_pred CeEEecCCCEEEEEEECCC
Confidence 9999999999999999876
No 24
>PLN02835 oxidoreductase
Probab=98.86 E-value=2e-07 Score=97.20 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEE-EEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..++|||+.. .|.|++++|+++++++.|.-. ....++.+|-.+.- -..||.+. ..-.|.||+.
T Consensus 48 ~~~~~~NG~~P---------GP~I~~~~GD~v~v~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~s 112 (539)
T PLN02835 48 QQVILINGQFP---------GPRLDVVTNDNIILNLINKLD-QPFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSN 112 (539)
T ss_pred EEEEEECCcCC---------CCCEEEECCCEEEEEEEeCCC-CCCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCc
Confidence 35799999853 489999999999999999974 45556666654432 24698643 2347999999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
++..+++.+.+|.||.+++.
T Consensus 113 f~Y~F~~~~q~GT~WYHsH~ 132 (539)
T PLN02835 113 YTYKFQTKDQIGTFTYFPST 132 (539)
T ss_pred EEEEEEECCCCEeEEEEeCc
Confidence 99999975457999999985
No 25
>PLN02792 oxidoreductase
Probab=98.75 E-value=5.8e-07 Score=93.50 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEE---eCCCccCceeecEEEecCC
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVG---VDTSYTKPFPTSVIMIAPG 187 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~v~P~~~~~i~l~~G 187 (450)
-..++|||+.. .|.|++++|+++++++.|-.. ....+| -|-+.+.. .||.+. . .-.|.||
T Consensus 35 ~~~~~vNGq~P---------GP~I~~~~GD~v~V~v~N~L~-~~ttiH--WHGl~q~~~~~~DGv~~----t-qcPI~PG 97 (536)
T PLN02792 35 RRGILINGQFP---------GPEIRSLTNDNLVINVHNDLD-EPFLLS--WNGVHMRKNSYQDGVYG----T-TCPIPPG 97 (536)
T ss_pred EEEEEECCCCC---------CCcEEEECCCEEEEEEEeCCC-CCcCEe--CCCcccCCCCccCCCCC----C-cCccCCC
Confidence 35799999853 599999999999999999974 444444 44444443 799633 1 2478999
Q ss_pred CeEEEEEEeCCCCceeEEEeee
Q 013075 188 QTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 188 ~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
+.+...+++++.+|.||.+++.
T Consensus 98 ~sftY~F~~~~q~GT~WYHsH~ 119 (536)
T PLN02792 98 KNYTYDFQVKDQVGSYFYFPSL 119 (536)
T ss_pred CcEEEEEEeCCCccceEEecCc
Confidence 9999999996447999999985
No 26
>PLN02354 copper ion binding / oxidoreductase
Probab=98.70 E-value=1.2e-06 Score=91.55 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=64.0
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEE-EEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..++|||+.. .|.|++++|+++++++.|... ....+|.+|-.+.- -..||.+. ..-.|.||+.
T Consensus 46 r~~~~iNGq~P---------GP~I~~~~GD~v~V~v~N~l~-~~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~s 110 (552)
T PLN02354 46 QQVILINGQFP---------GPNINSTSNNNIVINVFNNLD-EPFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTN 110 (552)
T ss_pred EEEEEECCCCc---------CCcEEEeCCCEEEEEEEECCC-CCcccccccccCCCCcccCCCcC-----CcCCCCCCCc
Confidence 45799999853 599999999999999999974 44455665544332 24788642 3447999999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
+...+++.+..|.||.+++.
T Consensus 111 f~Y~F~~~~q~GT~WYHsH~ 130 (552)
T PLN02354 111 FTYHFQPKDQIGSYFYYPST 130 (552)
T ss_pred EEEEEEeCCCCcceEEecCc
Confidence 99999986457999999985
No 27
>PLN02991 oxidoreductase
Probab=98.68 E-value=1.2e-06 Score=91.20 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=64.8
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceE-EEEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLT-VVGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-via~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..++|||+.. .|.|+++.|+++++++.|.-. ....+|.+|-.+. --..||.+. . .-.|.||+.
T Consensus 47 r~~~~vNG~~P---------GP~I~~~~GD~v~V~V~N~L~-~~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~s 111 (543)
T PLN02991 47 QQGILINGKFP---------GPDIISVTNDNLIINVFNHLD-EPFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKN 111 (543)
T ss_pred EEEEEEcCCCC---------CCcEEEECCCEEEEEecCCCC-CCccEEECCcccCCCccccCCCC----C-CCccCCCCc
Confidence 35799999853 589999999999999999974 4555666665532 234799632 2 347999999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
+...+++++.+|.||.+++.
T Consensus 112 ftY~F~~~~q~GT~WYHsH~ 131 (543)
T PLN02991 112 YTYALQVKDQIGSFYYFPSL 131 (543)
T ss_pred EEEEEEeCCCCcceEEecCc
Confidence 99999996457999999985
No 28
>PLN02168 copper ion binding / pectinesterase
Probab=98.63 E-value=2e-06 Score=89.62 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=63.6
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEE-EeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVV-GVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..+++||+.. .|.|++++|+++++++.|.-. ....+|.+|..+.-- ..||.+- ..-.|.||++
T Consensus 45 ~~~~~vNG~~P---------GP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~s 109 (545)
T PLN02168 45 KQVIVINDMFP---------GPLLNATANDVINVNIFNNLT-EPFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTN 109 (545)
T ss_pred EEEEEECCcCC---------CCcEEEECCCEEEEEEEeCCC-CCccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCc
Confidence 34689999853 599999999999999999975 455566666443221 2488642 2347999999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
+...+++++.+|.||.+++.
T Consensus 110 ftY~F~~~~q~GT~WYHsH~ 129 (545)
T PLN02168 110 WTYRFQVKDQIGSYFYFPSL 129 (545)
T ss_pred EEEEEEeCCCCceEEEecCh
Confidence 99999996457999999985
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.62 E-value=2.3e-06 Score=89.86 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=65.7
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEE-EEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..+++||+.. .|.+++++|+++++++.|........|+++|....- -..||.+- +..-.|.||++
T Consensus 20 ~~~~~~Ng~~p---------GP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s 86 (541)
T TIGR03388 20 KLVIGINGQFP---------GPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGET 86 (541)
T ss_pred eeEEEECCcCC---------CCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCE
Confidence 34789999853 489999999999999999975566678888875321 12577532 23457899999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
+...+++++ +|.||.+++.
T Consensus 87 ~~y~f~~~~-~Gt~wyH~H~ 105 (541)
T TIGR03388 87 FIYNFVVDR-PGTYFYHGHY 105 (541)
T ss_pred EEEEEEcCC-CEEEEEEecc
Confidence 999999985 7999999985
No 30
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.62 E-value=2.6e-06 Score=89.27 Aligned_cols=236 Identities=13% Similarity=0.165 Sum_probs=133.4
Q ss_pred CceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEE-EEeCCCccCceeecEEEecCCCeE
Q 013075 112 DALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQTT 190 (450)
Q Consensus 112 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~~~i~l~~G~R~ 190 (450)
..++|||+.. .|.|+++.|+++++++.|.-......+|.+|-.+.- -..||.+.. ..-.|.||+.+
T Consensus 28 ~~~~~NG~~P---------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf 94 (538)
T TIGR03390 28 YSVVVNGTSP---------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFF 94 (538)
T ss_pred EEEEECCcCC---------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcE
Confidence 4799999853 599999999999999999865455667777765432 246887532 22257899999
Q ss_pred EEEEEeC-CCCceeEEEeeeeccccccCCCccEEEEEEeccCCCCCCCCCCCCCCCcCCCCCCCCCccchhhhhhccccc
Q 013075 191 NVLLTAD-QPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSL 269 (450)
Q Consensus 191 dv~v~~~-~~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l 269 (450)
...++++ +.+|.||.+++.... ...+ .+.|..++... .+ . .+.... ...|...
T Consensus 95 ~Y~f~~~~~q~GT~WYHsH~~~Q----~~~l--~G~lIV~~~~~---------~~--~----~~d~e~-----~l~l~Dw 148 (538)
T TIGR03390 95 DYEIKPEPGDAGSYFYHSHVGFQ----AVTA--FGPLIVEDCEP---------PP--Y----KYDDER-----ILLVSDF 148 (538)
T ss_pred EEEEEecCCCCeeeEEecCCchh----hhcc--eeEEEEccCCc---------cC--C----CccCcE-----EEEEeCC
Confidence 9999875 357999999985221 1123 33333332111 00 0 000000 0000000
Q ss_pred ccCCCCcccceeEEEEeccceeccCCCCCCCccCCCCCeeeeeeccccccCCCchhhHHHHHhCCCCCccCCCCCCCCcc
Q 013075 270 HQVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPII 349 (450)
Q Consensus 270 ~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~p~~ 349 (450)
.-. ........+ ....... .+..-...|||+....... ..
T Consensus 149 ~~~-~~~~~~~~~-~~~~~~~--------------~~~~d~~liNG~~~~~~~~-----------------~~------- 188 (538)
T TIGR03390 149 FSA-TDEEIEQGL-LSTPFTW--------------SGETEAVLLNGKSGNKSFY-----------------AQ------- 188 (538)
T ss_pred CCC-CHHHHHhhh-hccCCcc--------------CCCCceEEECCcccccccc-----------------cc-------
Confidence 000 000000000 0000000 0001134577753211000 00
Q ss_pred cccCCCCCCCCcCCCCCceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCc-eEEEEecCCCCCCCCCCCCCCCCCCCc
Q 013075 350 FDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHE-FYVVGSGLGNFNPSTDTAKFNLIDPPR 428 (450)
Q Consensus 350 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~-F~Vl~~g~G~~~~~~~~~~~n~~~P~~ 428 (450)
.+.. . .| ....+.++.|++++|.|+|.+. ....-|+|.||. |+||+.- | .+..|..
T Consensus 189 ~~~~----~----~~-~~~~~~v~~G~~yRlRlINa~~--~~~~~~~idgH~~~~VIa~D-G-----------~~~~P~~ 245 (538)
T TIGR03390 189 INPS----G----SC-MLPVIDVEPGKTYRLRFIGATA--LSLISLGIEDHENLTIIEAD-G-----------SYTKPAK 245 (538)
T ss_pred ccCC----C----CC-cceEEEECCCCEEEEEEEccCC--ceEEEEEECCCCeEEEEEeC-C-----------CCCCceE
Confidence 0000 0 01 1246889999999999999763 345789999999 9999973 2 2346778
Q ss_pred cceEEeCCCCEEEEEEEccCC
Q 013075 429 RNTIGTPPGGWVAVRFVAENP 449 (450)
Q Consensus 429 RDTv~vp~~g~~viRf~adNP 449 (450)
.|++.|.+|+-.-|-++++++
T Consensus 246 v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred eCeEEEccCCEEEEEEECCCc
Confidence 899999999999999998764
No 31
>PLN02604 oxidoreductase
Probab=98.50 E-value=1.1e-05 Score=84.98 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=66.5
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEE-EEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..++|||+.. .|.++++.|++++++|.|........+|.+|+.+.- -..||.+ .+....|.||++
T Consensus 43 r~~~~~Ng~~p---------gP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~pg~s 109 (566)
T PLN02604 43 KLVITINGRSP---------GPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTE----GVTQCPILPGET 109 (566)
T ss_pred eeEEEECCccC---------CCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCC----ccccCccCCCCe
Confidence 34689999863 489999999999999999975566778888885321 1257742 234567899999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
+...++++ .+|.||.+++.
T Consensus 110 ~~y~f~~~-~~Gt~wyH~H~ 128 (566)
T PLN02604 110 FTYEFVVD-RPGTYLYHAHY 128 (566)
T ss_pred EEEEEEcC-CCEEEEEeeCc
Confidence 99999997 47999999986
No 32
>PRK10883 FtsI repressor; Provisional
Probab=98.47 E-value=1.5e-05 Score=82.19 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=59.7
Q ss_pred CceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEE
Q 013075 112 DALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTN 191 (450)
Q Consensus 112 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~d 191 (450)
..+.+||+.. .|+|++++|+++++++.|.-. ....++++|-.+.-- .||..- ..|.||++++
T Consensus 66 ~v~~~ng~~p---------GPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~-------~~I~PG~~~~ 127 (471)
T PRK10883 66 SVWGINGRYL---------GPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA-------RMMSPNADWA 127 (471)
T ss_pred eEEEECCccc---------CCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc-------ccCCCCCeEE
Confidence 4688999753 489999999999999999874 455567766543211 134321 1388999999
Q ss_pred EEEEeCCCCceeEEEeee
Q 013075 192 VLLTADQPPARYYMAAHA 209 (450)
Q Consensus 192 v~v~~~~~~g~y~l~~~~ 209 (450)
..+..++.+|.||.+.+.
T Consensus 128 y~f~~~~~aGT~WYH~H~ 145 (471)
T PRK10883 128 PVLPIRQNAATCWYHANT 145 (471)
T ss_pred EEEecCCCceeeEEccCC
Confidence 999888778999999985
No 33
>PLN02191 L-ascorbate oxidase
Probab=98.47 E-value=8.8e-06 Score=85.73 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=65.1
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEE-EEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..++|||+.. .|.++++.|+++++++.|.-......++.+|..+.- -..||.+- +..-.|.||+.
T Consensus 42 ~~v~~vNg~~p---------GP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s 108 (574)
T PLN02191 42 GAVMTVNGQFP---------GPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGET 108 (574)
T ss_pred eeEEEECCcCC---------CCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCe
Confidence 45799999853 499999999999999999965556667777765321 12577532 23346899999
Q ss_pred EEEEEEeCCCCceeEEEeee
Q 013075 190 TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~ 209 (450)
+...+++++ +|.||.+++.
T Consensus 109 ~~Y~f~~~~-~GT~wYHsH~ 127 (574)
T PLN02191 109 FTYKFTVEK-PGTHFYHGHY 127 (574)
T ss_pred EEEEEECCC-CeEEEEeeCc
Confidence 999999985 7999999985
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.46 E-value=4.8e-07 Score=94.91 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=71.4
Q ss_pred eeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEE
Q 013075 114 LTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVL 193 (450)
Q Consensus 114 ~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~ 193 (450)
++|||+.. .....++++.|+++||||+|.+ ...+.++++||.|.++..||.+. ...+++.|.|||+.++.
T Consensus 488 wtiNG~~~-------~~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~~~~G~~~--~~~dTv~V~Pg~t~~~~ 557 (587)
T TIGR01480 488 WSFDGEAF-------GLKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELEDGQGEFQ--VRKHTVDVPPGGKRSFR 557 (587)
T ss_pred EEECCccC-------CCCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeeecCCCccc--ccCCceeeCCCCEEEEE
Confidence 78999864 1224688999999999999977 56788999999999998888632 23477999999999999
Q ss_pred EEeCCCCceeEEEeee
Q 013075 194 LTADQPPARYYMAAHA 209 (450)
Q Consensus 194 v~~~~~~g~y~l~~~~ 209 (450)
+.++ .+|.|+++|+.
T Consensus 558 f~ad-~pG~w~~HCH~ 572 (587)
T TIGR01480 558 VTAD-ALGRWAYHCHM 572 (587)
T ss_pred EECC-CCeEEEEcCCC
Confidence 9999 58999999985
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.46 E-value=1.5e-06 Score=74.28 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=71.3
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCcc-----------CceeecEEEecCCCeEEEEEEeCCC
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-----------KPFPTSVIMIAPGQTTNVLLTADQP 199 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-----------~P~~~~~i~l~~G~R~dv~v~~~~~ 199 (450)
...+.++.|++++|+|+|.+. ..+.|+++||.|.|++.++... .|...|++.|.+|++..+.++++ .
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-N 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-S
T ss_pred cceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-c
Confidence 378999999999999999774 5889999999999999999984 57789999999999999999998 7
Q ss_pred CceeEEEeeee
Q 013075 200 PARYYMAAHAY 210 (450)
Q Consensus 200 ~g~y~l~~~~~ 210 (450)
+|.|.++|+..
T Consensus 111 ~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 PGPWLFHCHIL 121 (138)
T ss_dssp TEEEEEEESSH
T ss_pred ceEEEEEEchH
Confidence 89999999974
No 36
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.44 E-value=1.3e-05 Score=84.26 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=66.1
Q ss_pred CceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEE-EeCCCccCceeecEEEecCCCeE
Q 013075 112 DALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVV-GVDTSYTKPFPTSVIMIAPGQTT 190 (450)
Q Consensus 112 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~~~i~l~~G~R~ 190 (450)
..++|||+.. .|.|++++|+++++++.|... ....+|.+|-.+.-- ..||.+ . ..-.|.||+.+
T Consensus 49 ~vi~vNGq~P---------GPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sf 113 (596)
T PLN00044 49 EAIGINGQFP---------GPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNW 113 (596)
T ss_pred EEEEEcCcCC---------CCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCC---C--CcCCcCCCCcE
Confidence 4789999853 599999999999999999974 566677777654432 479863 2 33589999999
Q ss_pred EEEEEeCCCCceeEEEeee
Q 013075 191 NVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 191 dv~v~~~~~~g~y~l~~~~ 209 (450)
...+++++..|.||.+++.
T Consensus 114 tY~F~~~dq~GT~WYHsH~ 132 (596)
T PLN00044 114 TYQFQVKDQVGSFFYAPST 132 (596)
T ss_pred EEEEEeCCCCceeEeeccc
Confidence 9999996457999999985
No 37
>PRK10965 multicopper oxidase; Provisional
Probab=98.35 E-value=2.1e-06 Score=89.29 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred eeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCc---eeecEEEecCCCeE
Q 013075 114 LTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKP---FPTSVIMIAPGQTT 190 (450)
Q Consensus 114 ~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P---~~~~~i~l~~G~R~ 190 (450)
.+|||+... ...+.+.++.|++.+|+|+|.+....+-|||+|+.|+|++.||.+..+ ...|+|.+.+ ++.
T Consensus 414 ~~ING~~~~------~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~ 486 (523)
T PRK10965 414 NKINGKAFD------MNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRS 486 (523)
T ss_pred ccCCCeECC------CCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEE
Confidence 389999641 123567899999999999999865678899999999999999998753 4679999976 889
Q ss_pred EEEEEeCC---CCceeEEEeeee
Q 013075 191 NVLLTADQ---PPARYYMAAHAY 210 (450)
Q Consensus 191 dv~v~~~~---~~g~y~l~~~~~ 210 (450)
.++++++. .+|.|.++|+.+
T Consensus 487 ~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 487 EVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEEEEecCCCCCCCCEEEEeCch
Confidence 99999984 357999999975
No 38
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=0.00051 Score=71.61 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=68.3
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcc-eEEEEeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHK-LTVVGVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~P~~~~~i~l~~G~R 189 (450)
-..++|||+.. .|.|.++.|+++.++++|-. ...+.++.+|-. .+--..||.++ ..=.|.|||.
T Consensus 47 ~~vi~iNG~fP---------GP~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~ 111 (563)
T KOG1263|consen 47 KQVITINGQFP---------GPTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGEN 111 (563)
T ss_pred ceeEeecCCCC---------CCeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCcc-----ccCCcCCCCe
Confidence 35789999863 49999999999999999995 588888888755 33445699443 2335789999
Q ss_pred EEEEEEeCCCCceeEEEeeeec
Q 013075 190 TNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
|..-++.++..|.||-+++...
T Consensus 112 ~tY~F~v~~q~GT~~yh~h~~~ 133 (563)
T KOG1263|consen 112 FTYRFTVKDQIGTLWYHSHVSW 133 (563)
T ss_pred EEEEEEeCCcceeEEEeecccc
Confidence 9999999976799999998643
No 39
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.87 E-value=0.00017 Score=74.31 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=75.1
Q ss_pred CceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCcc---CceeecEEEecCCC
Q 013075 112 DALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT---KPFPTSVIMIAPGQ 188 (450)
Q Consensus 112 ~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v---~P~~~~~i~l~~G~ 188 (450)
..+.+||+.... ....+.++.|+++||+|.|-.. -.+-|+++|+.|.|++.| ... .+...|++.+.+|+
T Consensus 343 ~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~ 414 (451)
T COG2132 343 YVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGE 414 (451)
T ss_pred ccccccCccCCC------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCe
Confidence 346777775421 2467899999999999999997 788899999999999999 333 35678999999999
Q ss_pred eEEEEEEeCCCCceeEEEeeee
Q 013075 189 TTNVLLTADQPPARYYMAAHAY 210 (450)
Q Consensus 189 R~dv~v~~~~~~g~y~l~~~~~ 210 (450)
|..+.++++ .+|.|.++|+..
T Consensus 415 ~~~v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 415 RLLVRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEEEEeCC-CCCceEEeccch
Confidence 999999999 578999999964
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.57 E-value=0.00017 Score=59.70 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=66.4
Q ss_pred CCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEE-EeCCCccCceeecEEEecCCCe
Q 013075 111 SDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVV-GVDTSYTKPFPTSVIMIAPGQT 189 (450)
Q Consensus 111 ~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~v~P~~~~~i~l~~G~R 189 (450)
...+++||+.. .|+|++++|++++++|.|.. .....++++|-.+.-- ..||.+-.+ .-.|.||++
T Consensus 14 ~~~~~~ng~~p---------GPtI~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~ 79 (117)
T PF07732_consen 14 RKVWTYNGQFP---------GPTIRVREGDTVRITVTNNL-DEPTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGES 79 (117)
T ss_dssp EEEEEETTBSS---------EEEEEEETTEEEEEEEEEES-SSGBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEE
T ss_pred EEEEEECCCCC---------CCEEEEEcCCeeEEEEEecc-ccccccccceeeeeeeeecCCccccc----ceeEEeecc
Confidence 45688999853 58999999999999999998 5666788887543221 256654322 235899999
Q ss_pred EEEEEEeCCCCceeEEEeeeec
Q 013075 190 TNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 190 ~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
+...+++++.+|.||.+++...
T Consensus 80 ~~Y~~~~~~~~Gt~wYH~H~~~ 101 (117)
T PF07732_consen 80 FTYEFTANQQAGTYWYHSHVHG 101 (117)
T ss_dssp EEEEEEESSCSEEEEEEECSTT
T ss_pred eeeeEeeeccccceeEeeCCCc
Confidence 9999999986899999998644
No 41
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.30 E-value=0.00042 Score=60.78 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=56.7
Q ss_pred ceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEeCCCCEEEEEEEc
Q 013075 367 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 446 (450)
Q Consensus 367 ~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~~n~~~P~~RDTv~vp~~g~~viRf~a 446 (450)
...+.++.|++++|.|.|.+. ...+.|++.||+|+||+.- |. ...|...|++.|.+|+-+-|-+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~D-G~-----------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAAD-GV-----------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEET-TE-----------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeec-cc-----------cccccccceEEeeCCeEEEEEEEe
Confidence 458999999999999999763 4579999999999999982 21 224778999999999999999999
Q ss_pred cC-CC
Q 013075 447 EN-PG 450 (450)
Q Consensus 447 dN-PG 450 (450)
+. ||
T Consensus 125 ~~~~g 129 (159)
T PF00394_consen 125 DQPPG 129 (159)
T ss_dssp CSCSS
T ss_pred CCCCC
Confidence 87 44
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.05 E-value=0.00066 Score=54.41 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEe
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVY 66 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 66 (450)
-+.||+++++.|. ++|+|+|||- ....+||.|.|+|+
T Consensus 63 ~~~pG~t~~~tF~---~~G~y~y~C~-~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 63 LNSPGESYEVTFS---TPGTYTFYCE-PHRGAGMVGKITVE 99 (99)
T ss_pred ccCCCCEEEEEeC---CCEEEEEEcC-CccccCCEEEEEEC
Confidence 3689999999994 4999999997 22335999999985
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.85 E-value=0.0014 Score=52.52 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=30.4
Q ss_pred CCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEe
Q 013075 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVY 66 (450)
Q Consensus 27 i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 66 (450)
+.||++++++|. .+|+|.|+|-- ...+||.|.|+|+
T Consensus 64 ~~~G~~~~~tF~---~~G~y~y~C~P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 64 LAPGETYSVTFT---KPGTYEYYCTP-HYEAGMVGTIIVE 99 (99)
T ss_dssp BSTTEEEEEEEE---SSEEEEEEETT-TGGTTSEEEEEEE
T ss_pred cCCCCEEEEEeC---CCeEEEEEcCC-CcccCCEEEEEEC
Confidence 789999999995 79999999963 3346999999995
No 44
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.73 E-value=0.0086 Score=51.65 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCCceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcc--eEE-EEeCCCccCceeecEEEec-
Q 013075 110 ISDALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVANHK--LTV-VGVDTSYTKPFPTSVIMIA- 185 (450)
Q Consensus 110 ~~~~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~--~~v-ia~DG~~v~P~~~~~i~l~- 185 (450)
....+.++|... |.|++++|+++++++.|......+.|.|..+. +.. -..||.... .+...+.
T Consensus 40 ~~~~f~~~~~~~----------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~---~~~~i~p~ 106 (148)
T TIGR03095 40 SMYSFEIHDLKN----------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFV---AGTGFLPP 106 (148)
T ss_pred CceeEEecCCCC----------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcc---ccCcccCC
Confidence 456788999765 99999999999999999976444455554332 111 135664321 1111222
Q ss_pred --CCCe--EEEEEEeCCCCceeEEEeee
Q 013075 186 --PGQT--TNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 186 --~G~R--~dv~v~~~~~~g~y~l~~~~ 209 (450)
+|+. .++.++++ .+|.||.+|..
T Consensus 107 ~~~g~~~~~~~tf~f~-~aGtywyhC~~ 133 (148)
T TIGR03095 107 PKSGKFGYTDFTYHFS-TAGTYWYLCTY 133 (148)
T ss_pred CCCCccceeEEEEECC-CCeEEEEEcCC
Confidence 3444 48888888 47999999874
No 45
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.62 E-value=0.0099 Score=49.87 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=51.0
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAY 210 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~ 210 (450)
+..++|++|++++|++.|... ....+.++++. -...|.+|++..+.+.+++ +|.|+..|..-
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adK-pG~Y~y~C~~H 121 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADK-AGAFTIWCQLH 121 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCC-CEEEEEeCCCC
Confidence 579999999999999999886 46666666652 1567899999999999995 79999998753
No 46
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.17 E-value=0.0033 Score=52.71 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.9
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhh
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWL 55 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~ 55 (450)
-|+||++.+|+|.+ +++|+|||||-.|..
T Consensus 95 ~I~pGet~TitF~a-dKpG~Y~y~C~~HP~ 123 (135)
T TIGR03096 95 VIKAGETKTISFKA-DKAGAFTIWCQLHPK 123 (135)
T ss_pred EECCCCeEEEEEEC-CCCEEEEEeCCCCCh
Confidence 48999999999986 999999999988753
No 47
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.00 E-value=0.037 Score=44.60 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=42.7
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
+..+++++|+.++|.+.|.+... +.|.+++. .-...|.+|+...+.|... .+|.|.+.+..
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~----------------~~~~~l~~g~~~~~~f~~~-~~G~y~~~C~~ 94 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL----------------GISKVLPPGETATVTFTPL-KPGEYEFYCTM 94 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGGG----------------TEEEEE-TT-EEEEEEEE--S-EEEEEB-SS
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECCC----------------ceEEEECCCCEEEEEEcCC-CCEEEEEEcCC
Confidence 46999999999999999998654 66666662 1236889999999999877 57999999863
No 48
>PRK02710 plastocyanin; Provisional
Probab=95.21 E-value=0.023 Score=47.13 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEe
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVY 66 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 66 (450)
.+.||++++|.|. ++|+|-|+|=.| ..+||.|-|+|+
T Consensus 83 ~~~pg~t~~~tF~---~~G~y~y~C~~H-~~~gM~G~I~V~ 119 (119)
T PRK02710 83 AFAPGESWEETFS---EAGTYTYYCEPH-RGAGMVGKITVE 119 (119)
T ss_pred ccCCCCEEEEEec---CCEEEEEEcCCC-ccCCcEEEEEEC
Confidence 4789999999994 389999999633 225999999984
No 49
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.30 E-value=0.051 Score=44.61 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEe
Q 013075 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVY 66 (450)
Q Consensus 27 i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 66 (450)
..+|++|+|.| .++|+|=|+|=.| ...||.|.|+|+
T Consensus 80 ~~~G~t~s~Tf---~~~G~Y~Y~C~pH-~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTF---EEPGIYLYVCVPH-EALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEe---cCCcEEEEEccCC-CCCCCEEEEEEC
Confidence 57899999999 4699999999655 234999999985
No 50
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.59 E-value=0.083 Score=40.66 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=28.1
Q ss_pred CCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEe
Q 013075 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVY 66 (450)
Q Consensus 27 i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 66 (450)
+.||++|++.| +++|+|=|||=.|. .|.|-|+|+
T Consensus 50 ~~~g~~~~~tf---~~~G~y~y~C~~Hp---~M~G~v~V~ 83 (83)
T TIGR02657 50 MKKEQAYSLTF---TEAGTYDYHCTPHP---FMRGKVVVE 83 (83)
T ss_pred cCCCCEEEEEC---CCCEEEEEEcCCCC---CCeEEEEEC
Confidence 57888888888 57999999996654 699999985
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=93.57 E-value=0.1 Score=42.99 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=30.2
Q ss_pred CCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEecCCC
Q 013075 28 QPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVYPRMG 70 (450)
Q Consensus 28 ~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~ 70 (450)
.+|++++++| +.+|+|=|+|=.| ..+||.|.|+|.+++.
T Consensus 53 ~~g~~~~~tF---~~~G~Y~Y~C~pH-~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 53 KINEEYTVTV---TEEGVYGVKCTPH-YGMGMVALIQVGDPPA 91 (116)
T ss_pred CCCCEEEEEe---CCCEEEEEEcCCC-ccCCCEEEEEECCCCc
Confidence 4678877777 5789999999633 2359999999998643
No 52
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.05 E-value=0.1 Score=54.84 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=34.5
Q ss_pred CCCCCeEEEEEEeCCceeeeeeccChhh--hhcceeEEEEEecC
Q 013075 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRW--LRATVYGALIVYPR 68 (450)
Q Consensus 27 i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~--~~~Gl~G~liV~~~ 68 (450)
+.||++.+..|++ +++|.|||||..-- .-.+|+|-|+|+++
T Consensus 593 v~PG~t~svtF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 593 VAPQATASVTFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EcCCceEEEEEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 7899999999986 89999999998632 22499999999874
No 53
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=93.05 E-value=0.44 Score=42.53 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=57.1
Q ss_pred ceeeCCcccCCCCCCCCceeeEEeeCCCEEEEEEEecCCCceEEEEEe--Cc---ceEEEEeCCCccC-----ceeecEE
Q 013075 113 ALTINGQPGDLYRCSSKETVRFPVEAGETILLRIINSAMNQEHFFGVA--NH---KLTVVGVDTSYTK-----PFPTSVI 182 (450)
Q Consensus 113 ~~liNG~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~--gh---~~~via~DG~~v~-----P~~~~~i 182 (450)
.+-.||.. ....++.|.+|-++.++|+|.+. -.+.|-+- +- ..-.++.||..+. +-....-
T Consensus 75 ~~nfnGts--------~G~m~i~VPAGw~V~i~f~N~~~-l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~ 145 (196)
T PF06525_consen 75 PFNFNGTS--------NGQMTIYVPAGWNVQITFTNQES-LPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSN 145 (196)
T ss_pred ceeeeccc--------CCcEEEEEcCCCEEEEEEEcCCC-CCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccC
Confidence 45566653 23479999999999999999874 44444432 11 2446777876551 2112223
Q ss_pred EecCCCeEEEEEEeCCCCceeEEEeee
Q 013075 183 MIAPGQTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 183 ~l~~G~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
-|..||+...++..- ++|.|||.|.-
T Consensus 146 GI~~G~s~~~~~~~l-~aG~YwlvC~i 171 (196)
T PF06525_consen 146 GISSGQSASGVYNDL-PAGYYWLVCGI 171 (196)
T ss_pred CccCCceeeEEEccC-CCceEEEEccC
Confidence 566999999877544 47999999864
No 54
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=92.88 E-value=0.37 Score=38.44 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=42.1
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCc-eeecEEEecCCCeEEEEEEeCCCCceeEEEee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKP-FPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 208 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P-~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~ 208 (450)
+..++|++|++++|. |.+. ..+.+.++...+-.-+. ...+ ...+.+.+.||+++++-++. +|.|..+|.
T Consensus 16 P~~i~v~~G~~V~~~--N~~~-~~H~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~ 85 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKG-GPHNVVFDEDAVPAGVK---ELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE 85 (99)
T ss_pred CCEEEECCCCEEEEE--ECCC-CCceEEECCCCCccchh---hhcccccccccccCCCCEEEEEeCC---CEEEEEEcC
Confidence 468999999988665 7652 44445444321110000 0011 12356789999999996553 699999986
No 55
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=91.61 E-value=0.26 Score=43.99 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEecCCCCC
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYPRMGSP 72 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~ 72 (450)
.|.+|++..-.|. +-++|+|||=|-.-+-++ ||++-|||.+.-..|
T Consensus 146 GI~~G~s~~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~P 192 (196)
T PF06525_consen 146 GISSGQSASGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSNVTVP 192 (196)
T ss_pred CccCCceeeEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecCcccc
Confidence 5889999987774 368999999998877774 999999999876543
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=91.21 E-value=0.17 Score=40.77 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEE
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIV 65 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV 65 (450)
.|.||++.+++|.. .++|+|=|+|-.++ . |.|-|||
T Consensus 69 ~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~-m~G~liV 104 (104)
T PF13473_consen 69 VLPPGETATVTFTP-LKPGEYEFYCTMHP--N-MKGTLIV 104 (104)
T ss_dssp EE-TT-EEEEEEEE--S-EEEEEB-SSS---T-TB-----
T ss_pred EECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-ceecccC
Confidence 48999999999974 89999999998766 2 6677765
No 57
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=91.11 E-value=0.22 Score=41.52 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEec
Q 013075 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVYP 67 (450)
Q Consensus 27 i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 67 (450)
-.+|++|++.| +.+|+|=|.|-.|. ..||.|.|+|++
T Consensus 92 ~~~~~s~~~Tf---e~~G~Y~Y~C~PH~-~~gM~G~IvV~~ 128 (128)
T COG3794 92 AGINESFTHTF---ETPGEYTYYCTPHP-GMGMKGKIVVGE 128 (128)
T ss_pred cCCCcceEEEe---cccceEEEEeccCC-CCCcEEEEEeCC
Confidence 34568888888 45999999995541 149999999974
No 58
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=90.91 E-value=0.63 Score=39.79 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=53.1
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEe------CcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeE
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVA------NHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYY 204 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~------gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~ 204 (450)
+..+.++.|+++|+.+-|.+... +.|-++ +|.-..+.+|- .+=-....+.|.||+...+.+.+.+ +|.|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~-hef~~~~~~~~~~~~~~~~~~~D--me~d~~~~v~L~PG~s~elvv~ft~-~g~ye 137 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELK-HEFTMDAPDKNLEHVTHMILADD--MEHDDPNTVTLAPGKSGELVVVFTG-AGKYE 137 (158)
T ss_pred CCcccccCCcEEeeeecCcccce-EEEeccCccccchhHHHhhhCCc--cccCCcceeEeCCCCcEEEEEEecC-CccEE
Confidence 35788999999999999999543 334433 23222233331 1123457899999999999999995 69999
Q ss_pred EEeee
Q 013075 205 MAAHA 209 (450)
Q Consensus 205 l~~~~ 209 (450)
++|..
T Consensus 138 ~~C~i 142 (158)
T COG4454 138 FACNI 142 (158)
T ss_pred EEecC
Confidence 99864
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.74 E-value=1.4 Score=46.52 Aligned_cols=66 Identities=26% Similarity=0.423 Sum_probs=47.9
Q ss_pred eeeEEeeCCCEEEEEEEecCC--CceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEee
Q 013075 131 TVRFPVEAGETILLRIINSAM--NQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 208 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~ 208 (450)
+..|.|+.|+.|+|+|-|.-. .-.+.|.|.++.+. +.+.||+...+.++++ .||.||+.|.
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------~dv~PG~t~svtF~ad-kPGvy~~~Ct 616 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------MEVAPQATASVTFTAD-KPGVYWYYCT 616 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------EEEcCCceEEEEEEcC-CCEEEEEECC
Confidence 456788888888888888633 33555666555432 3567999999999999 4799999998
Q ss_pred eeccc
Q 013075 209 AYNTA 213 (450)
Q Consensus 209 ~~~~~ 213 (450)
-++..
T Consensus 617 efCGa 621 (635)
T PRK02888 617 WFCHA 621 (635)
T ss_pred ccccc
Confidence 76543
No 60
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=90.35 E-value=3.4 Score=34.16 Aligned_cols=63 Identities=24% Similarity=0.425 Sum_probs=48.4
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.++.|+.++|+|-+. .-.+.|.+.+..+++ .+-||+.-.+-++++ .+|.|++++.-++
T Consensus 46 ~~l~lp~g~~v~~~ltS~--DViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~-~~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE--DVIHSFWIPELGIKM----------------DAIPGRTNSVTFTPD-KPGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEES--SS-EEEEETTCTEEE----------------EEBTTCEEEEEEEES-SSEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcC--CccccccccccCccc----------------ccccccceeeeeeec-cCCcEEEcCcccc
Confidence 689999999999999884 457778888766553 446888888888988 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
..
T Consensus 107 G~ 108 (120)
T PF00116_consen 107 GA 108 (120)
T ss_dssp ST
T ss_pred Cc
Confidence 44
No 61
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=89.37 E-value=0.57 Score=41.09 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCCeEEEEEEeCCceeeeeeccChhhhh-cceeEEEEEecCCCC
Q 013075 27 IQPGRSYTYRFTIEDQEGTLWWHAHSRWLR-ATVYGALIVYPRMGS 71 (450)
Q Consensus 27 i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~ 71 (450)
|.+|.+..=.| .+-++|+|||=|-.-+-. +||+|-|||-..-..
T Consensus 146 i~~Gqs~sg~~-~~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt~ 190 (195)
T TIGR03094 146 ISSGHSRSGWW-NDTSAGKYWLVCGITGHAESGMWAVVIVSSNVTT 190 (195)
T ss_pred ccccceeEEEe-ccCCCeeEEEEcccCChhhcCcEEEEEEecCccc
Confidence 55666744444 357999999999876655 599999999887644
No 62
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.84 E-value=5.2 Score=30.62 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=36.4
Q ss_pred EEEEEEecCCCceEEEEEe-Ccc--eEEEEeCCCcc------C--ceeecEEEecCCCeEEEEEEeCCC---CceeEEEe
Q 013075 142 ILLRIINSAMNQEHFFGVA-NHK--LTVVGVDTSYT------K--PFPTSVIMIAPGQTTNVLLTADQP---PARYYMAA 207 (450)
Q Consensus 142 ~rlRliN~~~~~~~~~~i~-gh~--~~via~DG~~v------~--P~~~~~i~l~~G~R~dv~v~~~~~---~g~y~l~~ 207 (450)
..|.+.|-+ ...+.|.+. |++ +.|...+|..| + -+......|.|||...+-.+.+.. +|.|.+.|
T Consensus 4 ~~l~v~N~s-~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNS-DEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-S-SS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCC-CCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 457777777 345555554 444 44445566666 1 234678999999999999998864 69998864
No 63
>PRK02710 plastocyanin; Provisional
Probab=86.23 E-value=2.8 Score=34.59 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=40.0
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 208 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~ 208 (450)
+..+.+++|++++| +|... ..+++.+++. .......+.+.+|+.+++.++. +|.|...|.
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~-~~H~v~~~~~------------~~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKL-APHNAVFDGA------------KELSHKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCC-CCceEEecCC------------ccccccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 46899999998766 57642 3455555422 1111234668999999876664 699999986
No 64
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=80.56 E-value=3 Score=33.05 Aligned_cols=64 Identities=27% Similarity=0.406 Sum_probs=41.0
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCcc--Cc----eeecEEEecCCCeEEEEEEeCCCCceeE
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT--KP----FPTSVIMIAPGQTTNVLLTADQPPARYY 204 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v--~P----~~~~~i~l~~G~R~dv~v~~~~~~g~y~ 204 (450)
+..+.|++|++++ ++|.. ... |++.+.. |+... +. ..-....+.+|+.+++-++ .+|.|.
T Consensus 16 P~~i~V~~G~tV~--~~n~~-~~~-------Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~ 81 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNND-SMP-------HNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYE 81 (99)
T ss_dssp SSEEEEETTEEEE--EEEES-SSS-------BEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEE
T ss_pred CCEEEECCCCEEE--EEECC-CCC-------ceEEEec-ccccccccccccCccccceecCCCCEEEEEeC---CCeEEE
Confidence 5789999999775 55642 222 3333332 33211 11 1115678999999999888 469999
Q ss_pred EEee
Q 013075 205 MAAH 208 (450)
Q Consensus 205 l~~~ 208 (450)
..|.
T Consensus 82 y~C~ 85 (99)
T PF00127_consen 82 YYCT 85 (99)
T ss_dssp EEET
T ss_pred EEcC
Confidence 9996
No 65
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=79.58 E-value=11 Score=27.49 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=38.6
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 208 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~ 208 (450)
.+.|.+++|+++++.+-+.+. ...|.|...+|..+....... -..+..--+.+.+. .+|.|+|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 478999999999998876664 223566666654332111111 11222333445555 5699999875
No 66
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=78.01 E-value=17 Score=30.16 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=51.5
Q ss_pred eeEEeeCC-CEEEEEEEecCCCc----eEEEEEe-CcceEEEE-------eCCCccCc----eeecEEEecCCCeEEEEE
Q 013075 132 VRFPVEAG-ETILLRIINSAMNQ----EHFFGVA-NHKLTVVG-------VDTSYTKP----FPTSVIMIAPGQTTNVLL 194 (450)
Q Consensus 132 ~~~~v~~G-~~~rlRliN~~~~~----~~~~~i~-gh~~~via-------~DG~~v~P----~~~~~i~l~~G~R~dv~v 194 (450)
.+|.|+++ +.+.+.|-|.|... .+++-|- .-++.-|+ .|-+||.+ ....+=.|++||..+|-+
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 58999984 89999999998533 2333221 22233332 34555643 134556899999999999
Q ss_pred EeCC-CCc-eeEEEeee
Q 013075 195 TADQ-PPA-RYYMAAHA 209 (450)
Q Consensus 195 ~~~~-~~g-~y~l~~~~ 209 (450)
+++. .+| +|...+..
T Consensus 96 ~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSF 112 (125)
T ss_pred ECCCCCCCCcceEEEcC
Confidence 9874 456 69998863
No 67
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=74.49 E-value=20 Score=28.08 Aligned_cols=71 Identities=10% Similarity=-0.000 Sum_probs=41.6
Q ss_pred EeeCCCEEEEEEE--ecCCCceEEEEEeCcceEEEEeCCCccCceeecEE-EecCCCeEEEEEEeCCC--CceeEEEeee
Q 013075 135 PVEAGETILLRII--NSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVI-MIAPGQTTNVLLTADQP--PARYYMAAHA 209 (450)
Q Consensus 135 ~v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i-~l~~G~R~dv~v~~~~~--~g~y~l~~~~ 209 (450)
..+|||++.+|.+ +... ......-....++|..-+|..+. ...+ .......++.-+++++. .|.|.|++..
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4689999999999 6652 11001111223566666665332 1222 45678889999998875 3999999975
No 68
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=72.02 E-value=41 Score=25.89 Aligned_cols=67 Identities=22% Similarity=0.315 Sum_probs=40.7
Q ss_pred EeeCCCEEE--EEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEE-EecCCCeEEEEEEeCC-CCceeEEEeeee
Q 013075 135 PVEAGETIL--LRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVI-MIAPGQTTNVLLTADQ-PPARYYMAAHAY 210 (450)
Q Consensus 135 ~v~~G~~~r--lRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i-~l~~G~R~dv~v~~~~-~~g~y~l~~~~~ 210 (450)
.+.+|+.++ +.+-|.|....-.+.+. +..||..+ ....| .|.+|+...+-+...- .+|.|.+++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 456676665 78889886553333333 33455544 33344 8899999999888764 569999888753
No 69
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=70.05 E-value=16 Score=27.87 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=37.4
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
++.+.+++|+++.| +|... .. |+++..+ |.. .........+.+|+.+.+.+ + .+|.|..+|..
T Consensus 10 P~~i~v~~GdtVt~--~N~d~-~~-------Hnv~~~~--g~~-~~~~~~~~~~~~g~~~~~tf--~-~~G~y~y~C~~ 72 (83)
T TIGR02657 10 TPELHVKVGDTVTW--INREA-MP-------HNVHFVA--GVL-GEAALKGPMMKKEQAYSLTF--T-EAGTYDYHCTP 72 (83)
T ss_pred CCEEEECCCCEEEE--EECCC-CC-------ccEEecC--CCC-ccccccccccCCCCEEEEEC--C-CCEEEEEEcCC
Confidence 57899999999887 46542 22 3333221 110 00111223467899988755 4 47999998864
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=68.53 E-value=22 Score=32.26 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=45.2
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
..+.++.|+.+||++-+.. -.+.|.+.+... .+..-||..-.+-++++ .+|.|..+|.-++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D--V~Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~-~~G~y~~~c~e~c 177 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD--VIHSFWVPELGG----------------KIDAIPGQYNALWFNAD-EPGVYYGYCAELC 177 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc--hhhcccccccCc----------------eEEecCCcEEEEEEEeC-CCEEEEEEehhhC
Confidence 5789999999999977643 234444443322 24456898888889888 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 178 G~ 179 (201)
T TIGR02866 178 GA 179 (201)
T ss_pred Cc
Confidence 43
No 71
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=64.76 E-value=6.9 Score=32.41 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEEEeCC-ceee-eeeccChhhhhcceeEEEE
Q 013075 26 PIQPGRSYTYRFTIED-QEGT-LWWHAHSRWLRATVYGALI 64 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 64 (450)
-|.||++-+-+|.++. ++|+ |=|-|-+-+-++.|.|.|.
T Consensus 84 liggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 84 VIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ccCCCceEEEEEECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 3899999999999743 6886 9999998887788888875
No 72
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=61.46 E-value=43 Score=27.41 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=38.5
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
+..++|++|++++|.--..+ ..+++.. .++.. .....+.+.+|+++++-++ .+|.|...|..
T Consensus 41 P~~ltV~~GdTVtw~~~~d~--~~HnV~s---------~~~~~---f~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p 102 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEWTGEG--GGHNVVS---------DGDGD---LDESERVSEEGTTYEHTFE---EPGIYLYVCVP 102 (115)
T ss_pred CCEEEECCCCEEEEEECCCC--CCEEEEE---------CCCCC---ccccccccCCCCEEEEEec---CCcEEEEEccC
Confidence 46889999999886543222 2333222 22221 1223445678999998885 46999998874
No 73
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=61.18 E-value=56 Score=30.73 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=48.1
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAY 210 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~ 210 (450)
...+.+..|++++|++-.. +-.+.|.|.+-..++- .-||...+..++++ ++|.|..+|+.+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~--DViHsF~IP~l~~k~d----------------~iPG~~~~~~~~~~-~~G~Y~g~Cae~ 196 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA--DVIHSFWIPQLGGKID----------------AIPGMTTELWLTAN-KPGTYRGICAEY 196 (247)
T ss_pred cceEEEeCCCeEEEEEEec--hhceeEEecCCCceee----------------ecCCceEEEEEecC-CCeEEEEEcHhh
Confidence 3578999999999988655 4566677776554443 34778888889998 479999999977
Q ss_pred ccc
Q 013075 211 NTA 213 (450)
Q Consensus 211 ~~~ 213 (450)
++.
T Consensus 197 CG~ 199 (247)
T COG1622 197 CGP 199 (247)
T ss_pred cCC
Confidence 654
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=60.86 E-value=67 Score=23.89 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=31.3
Q ss_pred eeCCCEE--EEEEEecCCCc--eEEEEEeCcceEEEEeCCCcc--CceeecEEEecCCCeEEEEEEeC--C--CCceeEE
Q 013075 136 VEAGETI--LLRIINSAMNQ--EHFFGVANHKLTVVGVDTSYT--KPFPTSVIMIAPGQTTNVLLTAD--Q--PPARYYM 205 (450)
Q Consensus 136 v~~G~~~--rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v--~P~~~~~i~l~~G~R~dv~v~~~--~--~~g~y~l 205 (450)
|++|+.. ++.+-|.|... .+.++++. -+|-.+ .|..+. .|.+|+...+-++.. + .+|.|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3456544 57888888543 34444442 234332 343444 899997766665543 3 3689999
Q ss_pred Eeee
Q 013075 206 AAHA 209 (450)
Q Consensus 206 ~~~~ 209 (450)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 75
>COG1470 Predicted membrane protein [Function unknown]
Probab=60.50 E-value=65 Score=32.96 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=51.1
Q ss_pred ceeeEEeeCC--CEEEEEEEecCCCc--eEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEE--EeCC--CCc
Q 013075 130 ETVRFPVEAG--ETILLRIINSAMNQ--EHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLL--TADQ--PPA 201 (450)
Q Consensus 130 ~~~~~~v~~G--~~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v--~~~~--~~g 201 (450)
....+++++| +..++++-|.|... .+.+.+++-.-+=+.+|+.-+ + .|.||+|-.|-+ +++. .+|
T Consensus 387 g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aG 459 (513)
T COG1470 387 GPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAG 459 (513)
T ss_pred CcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCC
Confidence 4578888998 56789999999533 556778777767777777633 3 245666655554 4444 348
Q ss_pred eeEEEeeeecc
Q 013075 202 RYYMAAHAYNT 212 (450)
Q Consensus 202 ~y~l~~~~~~~ 212 (450)
.|.+......+
T Consensus 460 dY~i~i~~ksD 470 (513)
T COG1470 460 DYRITITAKSD 470 (513)
T ss_pred cEEEEEEEeec
Confidence 99988776443
No 76
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=59.61 E-value=25 Score=28.87 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=42.0
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAY 210 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~ 210 (450)
+..++|++|++++|...+.+ +++.. .++. .|...+.+...+|+.++ ++++ .+|.|...|..-
T Consensus 14 P~~v~V~~GdTV~f~n~d~~----Hnv~~---------~~~~--~p~g~~~~~s~~g~~~~--~tF~-~~G~Y~Y~C~pH 75 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKG----HNVET---------IKGM--IPEGAEAFKSKINEEYT--VTVT-EEGVYGVKCTPH 75 (116)
T ss_pred CCEEEECCCCEEEEEECCCC----eeEEE---------ccCC--CcCCcccccCCCCCEEE--EEeC-CCEEEEEEcCCC
Confidence 57899999999998887753 22221 1110 12112222233555555 5555 469999998742
Q ss_pred ccccccCCCccEEEEEEecc
Q 013075 211 NTANAAFDNTTTTAILEYKS 230 (450)
Q Consensus 211 ~~~~~~~~~~~~~ail~y~~ 230 (450)
.. ....+.|....
T Consensus 76 ~~-------~GM~G~V~Vg~ 88 (116)
T TIGR02375 76 YG-------MGMVALIQVGD 88 (116)
T ss_pred cc-------CCCEEEEEECC
Confidence 21 23466666654
No 77
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=56.55 E-value=1.1e+02 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=10.5
Q ss_pred EEEEEecCCC-ceEEEEEeCc
Q 013075 143 LLRIINSAMN-QEHFFGVANH 162 (450)
Q Consensus 143 rlRliN~~~~-~~~~~~i~gh 162 (450)
++|++|++.. ..+.+.++|.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~ 23 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGT 23 (122)
T ss_pred EEEEEEcCCCCccEEEEECCE
Confidence 5666666654 3445555433
No 78
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=55.55 E-value=90 Score=25.80 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=39.8
Q ss_pred eEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCcc-CceeecEEEecCCCeEEEEEEeCCCCc
Q 013075 133 RFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-KPFPTSVIMIAPGQTTNVLLTADQPPA 201 (450)
Q Consensus 133 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-~P~~~~~i~l~~G~R~dv~v~~~~~~g 201 (450)
.|++.....|+|.+.. ....+|.|+|. .|++.++..- .+.....+.|..|++|.|.|...+..+
T Consensus 51 ~i~~~~~G~y~f~~~~---~~~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 51 YLKPPEDGEYTFSITS---DDGARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EEECCCCccEEEEEEc---CCcEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 4555555668888843 34567888886 3454444321 233445688888888888888765444
No 79
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=55.18 E-value=53 Score=27.46 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=40.5
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeee
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
+..++|++|+++|| +|.... +|+...+ ++- .|...+.+.-.+++.+.+-++. +|.|...|.+
T Consensus 53 PA~v~v~pGDTVtw--~~~d~~--------~Hnv~~~--~~~--~~~g~~~~~~~~~~s~~~Tfe~---~G~Y~Y~C~P 114 (128)
T COG3794 53 PAEVTVKPGDTVTW--VNTDSV--------GHNVTAV--GGM--DPEGSGTLKAGINESFTHTFET---PGEYTYYCTP 114 (128)
T ss_pred CcEEEECCCCEEEE--EECCCC--------CceEEEe--CCC--CcccccccccCCCcceEEEecc---cceEEEEecc
Confidence 56899999997765 566531 3433322 222 4444566666777888777764 6999999875
No 80
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=54.24 E-value=17 Score=31.24 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhhhc-ceeEEEEEec
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRA-TVYGALIVYP 67 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~ 67 (450)
-+.||++-+..|.. ..+|.|=.-|-..+.|+ ||.|-|.|.+
T Consensus 117 ~L~PG~s~elvv~f-t~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 117 TLAPGKSGELVVVF-TGAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred EeCCCCcEEEEEEe-cCCccEEEEecCCCcccCCcEEEEEeCC
Confidence 38999999999986 78999999999988885 9999998864
No 81
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=54.05 E-value=66 Score=26.77 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=43.7
Q ss_pred eEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCcc-------CceeecEEEecCCCeEEEEEEeCCCCc
Q 013075 133 RFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-------KPFPTSVIMIAPGQTTNVLLTADQPPA 201 (450)
Q Consensus 133 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v-------~P~~~~~i~l~~G~R~dv~v~~~~~~g 201 (450)
.|++.....|+|++-. ....+|.|+|.. |++.++..- .+.....+.|..|++|.|-|...+..+
T Consensus 53 ~~~~~~~G~y~f~~~~---~d~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTS---DDGARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEESSSEEEEEEEEE---SSEEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEecccCceEEEEEEe---cccEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 4567666789998883 345778898875 466665432 245667889999999999999765433
No 82
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=51.48 E-value=97 Score=27.52 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=48.8
Q ss_pred eeeEEeeCCCEEEEEEEecCCCceEEEEEe-Ccc----eEEEEeCCCcc-Cceee----cEEEecCCCeEEEEEEeCCCC
Q 013075 131 TVRFPVEAGETILLRIINSAMNQEHFFGVA-NHK----LTVVGVDTSYT-KPFPT----SVIMIAPGQTTNVLLTADQPP 200 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~-gh~----~~via~DG~~v-~P~~~----~~i~l~~G~R~dv~v~~~~~~ 200 (450)
..++-+..|-++.+-|+|.. ..++++.|- .-+ --.++.||..+ .+-.. ..=-|..|++.+.+.+.- .+
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e-~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~-~~ 161 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYE-SLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDT-SA 161 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCC-CCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccC-CC
Confidence 38999999999999999998 455555442 111 11245555433 11111 112345788877777766 57
Q ss_pred ceeEEEeee
Q 013075 201 ARYYMAAHA 209 (450)
Q Consensus 201 g~y~l~~~~ 209 (450)
|.||+.|.-
T Consensus 162 G~YwlvCgi 170 (195)
T TIGR03094 162 GKYWLVCGI 170 (195)
T ss_pred eeEEEEccc
Confidence 999999864
No 83
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=50.91 E-value=16 Score=36.51 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChhhhhcceeEEEEEecCC
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSRWLRATVYGALIVYPRM 69 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~ 69 (450)
.|.||.+.++.+++ .+|||=|+|=. ...+.|.|+|.+..
T Consensus 81 nIaPG~s~~l~~~L--~pGtY~~~C~~---~~~~~g~l~Vtg~~ 119 (375)
T PRK10378 81 NIAPGFSQKMTANL--QPGEYDMTCGL---LTNPKGKLIVKGEA 119 (375)
T ss_pred ccCCCCceEEEEec--CCceEEeecCc---CCCCCceEEEeCCC
Confidence 59999999988765 69999999922 24458999998754
No 84
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=47.97 E-value=67 Score=26.44 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=24.4
Q ss_pred ceeEEeecCCEEEEEEEeCCCCCCCCCCcccCCCceE
Q 013075 367 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFY 403 (450)
Q Consensus 367 ~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HLHGh~F~ 403 (450)
.+.+.++.|+.|.+.+.+. +..|-|.+-+....
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k 77 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIK 77 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCcc
Confidence 4578999999999999984 45677776655444
No 85
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.42 E-value=1e+02 Score=27.75 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=44.4
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
-++.+..|+.+||++-.. +-.+.|.+.+-..+ +..-||..-.+-++++ .+|.|..++.-++
T Consensus 116 ~~l~lp~g~~v~~~ltS~--DViHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~-~~G~y~g~C~e~C 176 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS--DVIHSFSVPDLNLK----------------MDAIPGRINHLFFCPD-RHGVFVGYCSELC 176 (194)
T ss_pred ceEEEeCCCEEEeeeecC--ccccceeccccCce----------------eecCCCceEEEEEEcC-CCEEEEEEeehhh
Confidence 357899999998887543 34555666654433 2334788888888888 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 177 G~ 178 (194)
T MTH00047 177 GV 178 (194)
T ss_pred Cc
Confidence 44
No 86
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.23 E-value=91 Score=28.88 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=44.8
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.+..|+.+||++-+.- -.+.|.+.+...+ +..-||..-.+-++++ .+|.|+..|.-++
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSLGVK----------------VDAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceeccccCce----------------eECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 4788999999999887743 3444555544333 3344788888888888 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 201 G~ 202 (228)
T MTH00140 201 GA 202 (228)
T ss_pred Cc
Confidence 43
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=39.17 E-value=1.2e+02 Score=21.86 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=18.3
Q ss_pred EEeeCCCEEEEEEEecCCCceEEEEEeCcceEEE
Q 013075 134 FPVEAGETILLRIINSAMNQEHFFGVANHKLTVV 167 (450)
Q Consensus 134 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 167 (450)
+.+.+|+..+||.-.+. .|.+.+-.++|.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT 30 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLT 30 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEE
Confidence 56678888888854333 256666666664
No 88
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=39.10 E-value=1.6e+02 Score=23.84 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred CEEEEEEEecCCCc-eEEEEEeCcc-eEEEEeCCCccCceeecEEEecCCCeEEEEEEeC
Q 013075 140 ETILLRIINSAMNQ-EHFFGVANHK-LTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTAD 197 (450)
Q Consensus 140 ~~~rlRliN~~~~~-~~~~~i~gh~-~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~ 197 (450)
..|+++|+|.+... .+.++++|.. +++. .....+.|.+|+..++-|...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 56899999999655 7778888743 3331 134678889998877666544
No 89
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=38.75 E-value=12 Score=31.38 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred EeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCcc
Q 013075 135 PVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT 174 (450)
Q Consensus 135 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v 174 (450)
....|.+|||||+.---+. +|-=..|+++++++|...+
T Consensus 119 ~Y~~GaRVrlRl~DlELs~--rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 119 AYQKGARVRLRLIDLELSE--RFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred HhhcCceEEEEEcChhHhh--hhhcCCccceEEecceeee
Confidence 4567999999999875322 2333468899999999876
No 90
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=38.29 E-value=1.9e+02 Score=22.46 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=37.6
Q ss_pred EeeCCCEEE--EEEEecCCCceEEEEEe--C---cceEEEEeCCCccCceeecEEEecCCCeEEEEEEeC-C-CCceeEE
Q 013075 135 PVEAGETIL--LRIINSAMNQEHFFGVA--N---HKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTAD-Q-PPARYYM 205 (450)
Q Consensus 135 ~v~~G~~~r--lRliN~~~~~~~~~~i~--g---h~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~-~-~~g~y~l 205 (450)
++..|+++. +.|.|.|.. ..+|++. . ..+.+ +| ..-.|+||+..++.|++. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 455677664 999999954 4555543 2 11222 22 233599999999999987 3 3476654
Q ss_pred Ee
Q 013075 206 AA 207 (450)
Q Consensus 206 ~~ 207 (450)
..
T Consensus 83 ~l 84 (102)
T PF14874_consen 83 SL 84 (102)
T ss_pred EE
Confidence 33
No 91
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=37.36 E-value=1.4e+02 Score=24.58 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=40.1
Q ss_pred EeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccC----ceeecEEEecCCCeEEEEEEeCC--CCceeEEEee
Q 013075 135 PVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTK----PFPTSVIMIAPGQTTNVLLTADQ--PPARYYMAAH 208 (450)
Q Consensus 135 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~----P~~~~~i~l~~G~R~dv~v~~~~--~~g~y~l~~~ 208 (450)
.+..|+.++|++-=-.....-.+. -.+.+...+|..+- ......+....++++.+.++++. .+|.|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 467788888777555433322222 23555666666552 11223455555999999999886 4799999987
Q ss_pred e
Q 013075 209 A 209 (450)
Q Consensus 209 ~ 209 (450)
.
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 5
No 92
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=36.53 E-value=49 Score=29.93 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=29.9
Q ss_pred EEEecCCCeEEEEEEeC--C-----CCceeEEEeeeeccccccCCCccEEEEEEecc
Q 013075 181 VIMIAPGQTTNVLLTAD--Q-----PPARYYMAAHAYNTANAAFDNTTTTAILEYKS 230 (450)
Q Consensus 181 ~i~l~~G~R~dv~v~~~--~-----~~g~y~l~~~~~~~~~~~~~~~~~~ail~y~~ 230 (450)
.-.+.+||.|||.|++. + +-|.|.+.....+............++|+|+.
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~S 106 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLASSSRPAMLPYRS 106 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEEEEecceecccCC
Confidence 44678999999998864 2 23788888876544321111122345555543
No 93
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=34.38 E-value=36 Score=32.01 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEEEeCCceeeeeeccChh-hhh-cceeEEEEEecCCC
Q 013075 26 PIQPGRSYTYRFTIEDQEGTLWWHAHSR-WLR-ATVYGALIVYPRMG 70 (450)
Q Consensus 26 ~i~pg~~~~Y~f~~~~~~Gt~wYH~H~~-~~~-~Gl~G~liV~~~~~ 70 (450)
-.-||...+..+.+ +++|+|.-+|+.- +.. +.|.|.++|.++++
T Consensus 170 d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 170 DAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred eecCCceEEEEEec-CCCeEEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 36788888888876 8999999999763 222 48999999999874
No 94
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=33.82 E-value=2.4e+02 Score=26.14 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=42.7
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
-++.+..|+.+||++-+.- -.+.+.+.+-.++ +..-||..-.+.++++ .+|.|+..+.-++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChhhc
Confidence 4677888888888887633 3444555544333 2233788888888888 5799999988655
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 201 G~ 202 (228)
T MTH00008 201 GA 202 (228)
T ss_pred Cc
Confidence 43
No 95
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=33.30 E-value=38 Score=25.87 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=19.6
Q ss_pred CCCCCCC---cccCCCCCCCeEEEEEEeCCc---eeeeee
Q 013075 15 WADGPEY---VTQCPIQPGRSYTYRFTIEDQ---EGTLWW 48 (450)
Q Consensus 15 ~~DGv~~---~tq~~i~pg~~~~Y~f~~~~~---~Gt~wY 48 (450)
|+||-.. +.+--|+||++.+|++.++.. +|+|..
T Consensus 41 wS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 41 WSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp TTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred ecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 5666543 223358999999999998433 688853
No 96
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.04 E-value=49 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.8
Q ss_pred cCCCCCCCeEEEEEEe---CCceeeeeeccCh
Q 013075 24 QCPIQPGRSYTYRFTI---EDQEGTLWWHAHS 52 (450)
Q Consensus 24 q~~i~pg~~~~Y~f~~---~~~~Gt~wYH~H~ 52 (450)
+.||+||.+++-.++. +...|+|-|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5689999999999943 3446999998844
No 97
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=31.22 E-value=30 Score=28.29 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.0
Q ss_pred CCCCCCcccCCCCCCCeEEEEEE
Q 013075 16 ADGPEYVTQCPIQPGRSYTYRFT 38 (450)
Q Consensus 16 ~DGv~~~tq~~i~pg~~~~Y~f~ 38 (450)
..||-|- |+-|+||++|+|.=-
T Consensus 65 G~GVVGe-QP~l~PG~~y~YtSg 86 (126)
T COG2967 65 GEGVVGE-QPLLAPGEEYQYTSG 86 (126)
T ss_pred cCceecc-ccccCCCCceEEcCC
Confidence 3666654 888999999999753
No 98
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=31.17 E-value=1.6e+02 Score=26.61 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=19.9
Q ss_pred ceeEEeecCCEEEEEEEeCCCCCCCCCCccc
Q 013075 367 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHL 397 (450)
Q Consensus 367 ~~~~~~~~g~~v~ivi~N~~~~~~~~HP~HL 397 (450)
.+.+.++.|+.|++.+.+. +..|.|.+
T Consensus 116 ~~~l~vp~g~~v~~~~ts~----DV~Hsf~i 142 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK----DVIHSFWV 142 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC----chhhcccc
Confidence 3468999999999999884 34455444
No 99
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=30.43 E-value=20 Score=29.31 Aligned_cols=7 Identities=43% Similarity=1.502 Sum_probs=6.1
Q ss_pred eeccChh
Q 013075 47 WWHAHSR 53 (450)
Q Consensus 47 wYH~H~~ 53 (450)
|||||..
T Consensus 70 ~YHSHP~ 76 (119)
T cd08058 70 WYHSHPT 76 (119)
T ss_pred EEecCCC
Confidence 9999983
No 100
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=29.84 E-value=1.8e+02 Score=29.25 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=42.9
Q ss_pred ceeeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeee
Q 013075 130 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 209 (450)
Q Consensus 130 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~ 209 (450)
.+..+.|++|+ ++|.+.|.+... .. +.++ +|..+ ....=.|.||....+.+.+. ||.|.+.|.+
T Consensus 42 ~p~~~tVpAG~-~~f~V~N~~~~~-~E-------fe~~--~~~~v---v~e~EnIaPG~s~~l~~~L~--pGtY~~~C~~ 105 (375)
T PRK10378 42 EPMTLTVNAGK-TQFIIQNHSQKA-LE-------WEIL--KGVMV---VEERENIAPGFSQKMTANLQ--PGEYDMTCGL 105 (375)
T ss_pred ccCceeeCCCC-EEEEEEeCCCCc-ce-------EEee--ccccc---cccccccCCCCceEEEEecC--CceEEeecCc
Confidence 35788999996 899999998543 22 3332 12211 01123899998888887774 7999999843
No 101
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=29.38 E-value=1.6e+02 Score=27.17 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=41.5
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
-++.+..|+.+||++-..- -.+.|.+. ...-....-||..-.+-++++ .+|.|...|.-++
T Consensus 139 nel~lP~g~pV~~~ltS~D--ViHSF~VP----------------~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS--VMNSFFIP----------------QLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECc--hhhhhhhh----------------hcCCeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 4678888888888775544 22333333 222233344788888889988 4799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 200 G~ 201 (226)
T TIGR01433 200 GP 201 (226)
T ss_pred Cc
Confidence 44
No 102
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.63 E-value=3.2e+02 Score=25.24 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=41.3
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
-++.+..|+.+||++-..- -.+.|.+.....+ +..-||..-.+-+.++ .+|.|+..+.-++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~lg~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED--VLHSWAVPSLGLK----------------TDAIPGRLNQTTLMST-RPGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECc--ccccccccccccc----------------eecCCCceEEEEEecC-CcEEEEEECcccc
Confidence 3677888888887775443 3444555544333 2233788888888887 5799999988655
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 201 G~ 202 (227)
T MTH00098 201 GS 202 (227)
T ss_pred Cc
Confidence 43
No 103
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=26.01 E-value=2.5e+02 Score=23.97 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=41.9
Q ss_pred CEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceee-------cEEEecCCCeE-EEEEEeCCCCceeEEEe
Q 013075 140 ETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT-------SVIMIAPGQTT-NVLLTADQPPARYYMAA 207 (450)
Q Consensus 140 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~-------~~i~l~~G~R~-dv~v~~~~~~g~y~l~~ 207 (450)
.+|-|.+=|.|... +.++...++|+ +||+.+.|..+ +.++|.|||-- .+.+.-.- .|--.+..
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l-SGyhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL-SGYHRIVV 140 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC-CcceEEEE
Confidence 46778888998543 46788888876 89988876433 56779999977 44444432 25444444
No 104
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.70 E-value=3.5e+02 Score=25.19 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=42.3
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.+..|+.+|+++-++- -.+.+.+.+..+++ ..-||..-.+.+.++ .+|.|+..+.-++
T Consensus 144 n~lvlP~~~~v~~~itS~D--ViHsf~vp~lg~k~----------------daiPG~~~~~~~~~~-~~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VLHSFAVPSLSVKI----------------DAVPGRLNQTSFFIK-RPGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hhccccccccCcee----------------EccCCceEeEEEEeC-CCEEEEEEChhhc
Confidence 4678888988888887653 34445555443332 333787778888888 5799999988655
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 205 G~ 206 (234)
T MTH00051 205 GA 206 (234)
T ss_pred Cc
Confidence 43
No 105
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.44 E-value=3.3e+02 Score=25.26 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=42.4
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
-++.+..|+.+||++-..- -.+.|.+.+..++ +..-||.+-.+.++++ .+|.|+..+.-++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~~k----------------~da~PG~~~~~~~~~~-~~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED--VLHSWAVPALGVK----------------MDAVPGRLNQTAFIAS-RPGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCc--cccceeccccCCc----------------cccCCCceEEEEEEeC-CceEEEEEChhhc
Confidence 3678888888887775443 3444555544322 2334788888888888 5799999998655
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 201 G~ 202 (230)
T MTH00129 201 GA 202 (230)
T ss_pred cc
Confidence 43
No 106
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=25.20 E-value=3e+02 Score=20.69 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=9.8
Q ss_pred eeCCCEEEEEEEecC
Q 013075 136 VEAGETILLRIINSA 150 (450)
Q Consensus 136 v~~G~~~rlRliN~~ 150 (450)
.+.|++++|++-..-
T Consensus 3 ~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 3 YRVGERVRFRVTSNR 17 (83)
T ss_pred ccCCCEEEEEEEeCC
Confidence 466777777776633
No 107
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=25.12 E-value=1.9e+02 Score=26.80 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.9
Q ss_pred eeeEEeeCCCEEEEEEEecC
Q 013075 131 TVRFPVEAGETILLRIINSA 150 (450)
Q Consensus 131 ~~~~~v~~G~~~rlRliN~~ 150 (450)
+|.+++++|+...+|++..+
T Consensus 75 PPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred CCeEEECCCCceEEEEEECC
Confidence 58999999999999999775
No 108
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=24.49 E-value=3.8e+02 Score=22.05 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=38.2
Q ss_pred CEEEEEEEecCCCceEEEEEeCcc-eEEEEeCCCccC------ceeecEEEecCCCeEEEEEEeCC
Q 013075 140 ETILLRIINSAMNQEHFFGVANHK-LTVVGVDTSYTK------PFPTSVIMIAPGQTTNVLLTADQ 198 (450)
Q Consensus 140 ~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~v~------P~~~~~i~l~~G~R~dv~v~~~~ 198 (450)
..++|.|-|.|...- .|.|.. +..+..||..+. ......+.|.||++..+.|....
T Consensus 20 ~~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 20 RHATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred cEEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 356799999986532 334433 566678888552 12456799999999998888774
No 109
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=24.29 E-value=46 Score=27.83 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=13.5
Q ss_pred CCCCCCcccCCCCCCCeEEEEE
Q 013075 16 ADGPEYVTQCPIQPGRSYTYRF 37 (450)
Q Consensus 16 ~DGv~~~tq~~i~pg~~~~Y~f 37 (450)
.+||-|- |+-|.||++|.|.=
T Consensus 66 G~GVVG~-qP~L~PGe~F~Y~S 86 (127)
T PRK05461 66 GEGVVGE-QPVLAPGESFEYTS 86 (127)
T ss_pred CCceecC-CceECCCCCeEEeC
Confidence 3566442 55579999877653
No 110
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=24.15 E-value=2e+02 Score=26.51 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=22.9
Q ss_pred eCCCEEEEEEEecCC------CceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEE
Q 013075 137 EAGETILLRIINSAM------NQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNV 192 (450)
Q Consensus 137 ~~G~~~rlRliN~~~------~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv 192 (450)
+-|.+..++|-|+.. .....+.+||...++ .....|.|.|||.+.+
T Consensus 115 RGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~----------~aG~~l~L~PGESiTL 166 (225)
T PF07385_consen 115 RGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTV----------PAGTQLRLNPGESITL 166 (225)
T ss_dssp EEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-----------TT-EEEE-TT-EEEE
T ss_pred cCCceEEEEEEeccCCCccccCCCeEEecCCcEEEe----------cCCceEEeCCCCeEee
Confidence 334566667766642 234445555555444 1346889999998765
No 111
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=23.82 E-value=3.6e+02 Score=25.12 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.8
Q ss_pred eeEEeeCCCEEEEEEEecCCCceE-EEEEeCcceEEEEeCCCccC
Q 013075 132 VRFPVEAGETILLRIINSAMNQEH-FFGVANHKLTVVGVDTSYTK 175 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~-~~~i~gh~~~via~DG~~v~ 175 (450)
..+-+++| +|.||+|.-+-...- -+.+-+.-+.++|+|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 46778997 799999988733222 24455677999999999875
No 112
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=23.49 E-value=2.6e+02 Score=28.72 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=33.3
Q ss_pred CEEEEEEEecCCCc-eEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeC
Q 013075 140 ETILLRIINSAMNQ-EHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTAD 197 (450)
Q Consensus 140 ~~~rlRliN~~~~~-~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~ 197 (450)
..|+++|+|.+... .+.++++|.+---+. .+ .+.+.|.+||+.++.|...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~------~~--~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIE------GP--GAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEE------cC--CceEEECCCCEEEEEEEEE
Confidence 57899999998654 677887774321111 11 1279999999987766654
No 113
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=23.49 E-value=65 Score=26.57 Aligned_cols=23 Identities=39% Similarity=0.967 Sum_probs=17.8
Q ss_pred CCCCCCcccCCCCCCCeEEEEEEe
Q 013075 16 ADGPEYVTQCPIQPGRSYTYRFTI 39 (450)
Q Consensus 16 ~DGv~~~tq~~i~pg~~~~Y~f~~ 39 (450)
.||=-+ ..|||..|+.++|++.+
T Consensus 65 ~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 65 TDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCccc-EeCCCcCCcEEEEEEee
Confidence 455322 48999999999999976
No 114
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=23.02 E-value=5.1e+02 Score=22.62 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=40.9
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.+..|+.+||++-.+- -.+.|.+..-.+++-++ ||..-.+.+.++ .+|.|+..+.-++
T Consensus 73 n~LvLP~g~~Vr~~lTS~D--VIHSF~VP~lgvK~Dav----------------PGr~n~l~~~~~-~~G~y~gqCsElC 133 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD--VIHSWSVPSLGIKADAI----------------PGRLHKINTFIL-REGVFYGQCSEMC 133 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc--cceeeeccccCceeecc----------------CCceEEEEEecC-CCeEEEEEcchhc
Confidence 3577888888877665443 45666666555443222 565556666666 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
..
T Consensus 134 G~ 135 (162)
T PTZ00047 134 GT 135 (162)
T ss_pred Cc
Confidence 44
No 115
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.48 E-value=3.6e+02 Score=24.69 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=41.0
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.+..|+.+||++-..- -.+.|.+..- .-.+-.-||..-.+-++++ .+|.|+..+.-++
T Consensus 130 n~l~iP~g~~v~~~ltS~D--ViHsf~vP~l----------------~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD--TMTSFWIPQL----------------GGQKYAMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCc--hhhhhhchhh----------------CceeecCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 3567778877777765443 2333444322 2233334888889999988 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 191 G~ 192 (217)
T TIGR01432 191 GE 192 (217)
T ss_pred Cc
Confidence 43
No 116
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.35 E-value=5.2e+02 Score=23.88 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.+..|+.+|+++-.. +-.+.|.+..-.+++ | .-||..-.+-++++ .+|.|...+.-++
T Consensus 140 n~l~lP~~~~v~~~~tS~--DViHsf~vp~l~~k~-------------d---avPG~~~~~~~~~~-~~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAA--DVIHSWTVPSLGVKV-------------D---AVPGRLNQLNFLIN-RPGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcC--chhhheeccccCCee-------------e---cCCCceEEEEEEEc-CceEEEEEeechh
Confidence 467888888777766433 345556665543332 2 23777778888888 5799999998765
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 201 G~ 202 (227)
T MTH00154 201 GA 202 (227)
T ss_pred Cc
Confidence 44
No 117
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.30 E-value=3e+02 Score=22.00 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=37.9
Q ss_pred eEEeeCC--CEEEEEEEecCCCceEEEEEeCcceEEE--------EeCCCccCceeecEEEecCCCeEEEEEEeC
Q 013075 133 RFPVEAG--ETILLRIINSAMNQEHFFGVANHKLTVV--------GVDTSYTKPFPTSVIMIAPGQTTNVLLTAD 197 (450)
Q Consensus 133 ~~~v~~G--~~~rlRliN~~~~~~~~~~i~gh~~~vi--------a~DG~~v~P~~~~~i~l~~G~R~dv~v~~~ 197 (450)
.+.+.+| ++.+|++.|.| .+++.+--+=|-+.+= ++=|--+.-.....|..-||+.-+|-+..-
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 4677788 47889999999 6776665554444331 111111111234567777777777766543
No 118
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=21.94 E-value=78 Score=26.11 Aligned_cols=17 Identities=35% Similarity=0.956 Sum_probs=15.1
Q ss_pred ccCCCCCCCeEEEEEEe
Q 013075 23 TQCPIQPGRSYTYRFTI 39 (450)
Q Consensus 23 tq~~i~pg~~~~Y~f~~ 39 (450)
..||+.+|+.++|.+.+
T Consensus 78 ~~CPl~~G~~~~~~~~~ 94 (127)
T cd00912 78 SFCPLRKGQQYSYAKTV 94 (127)
T ss_pred ccCCcCCCCEEEEEEEE
Confidence 47999999999999876
No 119
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.74 E-value=5.4e+02 Score=23.84 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=41.7
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCceeecEEEecCCCeEEEEEEeCCCCceeEEEeeeec
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAYN 211 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P~~~~~i~l~~G~R~dv~v~~~~~~g~y~l~~~~~~ 211 (450)
.++.+..|+.+||++-.. +-.+.+.+.+-..++ ..-||..-.+-+.++ .+|.|+..+.-++
T Consensus 140 n~lvlP~~~~v~~~~tS~--DViHsf~iP~lg~k~----------------daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAE--DVLHSWTVPALGVKM----------------DAVPGRLNQATFIIS-RPGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcC--cccccccccccCcee----------------EecCCceEEEEEEeC-CcEEEEEEchhhc
Confidence 467888888777776543 344555555444332 233777777778777 5799999988655
Q ss_pred cc
Q 013075 212 TA 213 (450)
Q Consensus 212 ~~ 213 (450)
+.
T Consensus 201 G~ 202 (230)
T MTH00185 201 GA 202 (230)
T ss_pred Cc
Confidence 43
No 120
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=21.52 E-value=37 Score=30.47 Aligned_cols=7 Identities=43% Similarity=1.502 Sum_probs=6.1
Q ss_pred eeccChh
Q 013075 47 WWHAHSR 53 (450)
Q Consensus 47 wYH~H~~ 53 (450)
|||||..
T Consensus 84 wYHSHP~ 90 (187)
T cd08067 84 WYHSHPT 90 (187)
T ss_pred EEecCCC
Confidence 9999974
No 121
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=21.34 E-value=1.6e+02 Score=27.20 Aligned_cols=18 Identities=0% Similarity=0.086 Sum_probs=15.5
Q ss_pred eeEEeecCCEEEEEEEeC
Q 013075 368 KLYKLKFGSRVQIVFQDT 385 (450)
Q Consensus 368 ~~~~~~~g~~v~ivi~N~ 385 (450)
+.+.+|.|+.|++.+...
T Consensus 139 nel~lP~g~pV~~~ltS~ 156 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN 156 (226)
T ss_pred ceEEEECCCEEEEEEEEC
Confidence 467899999999999874
No 122
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=21.05 E-value=71 Score=26.31 Aligned_cols=17 Identities=53% Similarity=1.144 Sum_probs=14.7
Q ss_pred ccCCCCCCCeEEEEEEe
Q 013075 23 TQCPIQPGRSYTYRFTI 39 (450)
Q Consensus 23 tq~~i~pg~~~~Y~f~~ 39 (450)
..|||.+|+.++|++.+
T Consensus 84 ~~CPi~~G~~~~~~~~~ 100 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTI 100 (134)
T ss_dssp TTSTBTTTEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEE
Confidence 48999999988888876
No 123
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.02 E-value=57 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.403 Sum_probs=29.5
Q ss_pred CCCCCCCcccCCCCCCCeEEEEEEe-CCceeeeeeccChhhhhc-ceeEE---EEEecCC
Q 013075 15 WADGPEYVTQCPIQPGRSYTYRFTI-EDQEGTLWWHAHSRWLRA-TVYGA---LIVYPRM 69 (450)
Q Consensus 15 ~~DGv~~~tq~~i~pg~~~~Y~f~~-~~~~Gt~wYH~H~~~~~~-Gl~G~---liV~~~~ 69 (450)
|+-|.|-..--.|..|+.+.|+..+ +.++|+|--|.-...+-+ .+.|| +.|++..
T Consensus 71 ~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g~~ 130 (381)
T PF04744_consen 71 WINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEGSM 130 (381)
T ss_dssp EETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES-G
T ss_pred eecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEeccc
Confidence 4556554444468999998888876 678999755554333334 47777 6677654
No 124
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=20.99 E-value=48 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.0
Q ss_pred EeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccCc
Q 013075 135 PVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKP 176 (450)
Q Consensus 135 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~P 176 (450)
....|.+||+||-..-.+.. |--....+++.++|+.++..
T Consensus 60 ~y~~G~rV~lrLkdlELs~~--FLG~~~d~TllEAd~~Llgl 99 (104)
T PF10246_consen 60 KYVRGSRVRLRLKDLELSAH--FLGASKDTTLLEADATLLGL 99 (104)
T ss_pred ccccCCEEEEEECCHhhhhh--hccCCCCcEEEEeeeEEEee
Confidence 35569999999987653332 34456779999999987754
No 125
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=20.55 E-value=88 Score=24.36 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=11.9
Q ss_pred CCCCCcccCCCCCCCeEEEEEE
Q 013075 17 DGPEYVTQCPIQPGRSYTYRFT 38 (450)
Q Consensus 17 DGv~~~tq~~i~pg~~~~Y~f~ 38 (450)
+||-|- |+-|.||++|+|.=-
T Consensus 50 ~GVVG~-~P~L~pGe~f~Y~S~ 70 (90)
T PF04379_consen 50 EGVVGQ-QPVLAPGESFEYTSG 70 (90)
T ss_dssp ESBTTB---EE-TTEEEEEEEE
T ss_pred CceEcc-CceECCCCcEEEcCC
Confidence 566432 444799998888643
No 126
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=20.29 E-value=41 Score=31.54 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=6.7
Q ss_pred eeeccChh
Q 013075 46 LWWHAHSR 53 (450)
Q Consensus 46 ~wYH~H~~ 53 (450)
-|||||-+
T Consensus 93 GwYHSHP~ 100 (244)
T cd08068 93 GWYHSHPH 100 (244)
T ss_pred EEEecCCC
Confidence 49999975
No 127
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=37 Score=32.89 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=7.2
Q ss_pred eeeeccChh
Q 013075 45 TLWWHAHSR 53 (450)
Q Consensus 45 t~wYH~H~~ 53 (450)
--|||||-+
T Consensus 118 VGWYHSHP~ 126 (316)
T KOG1555|consen 118 VGWYHSHPG 126 (316)
T ss_pred EeeccCCCC
Confidence 349999976
No 128
>PF14321 DUF4382: Domain of unknown function (DUF4382)
Probab=20.27 E-value=4.7e+02 Score=21.83 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=35.4
Q ss_pred eeEEeeCCCEEEEEEEecCCCceEEEEEeCcceEEEEeCCCccC-ceeecEEEecCCCeEEEEEEeCC
Q 013075 132 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTK-PFPTSVIMIAPGQTTNVLLTADQ 198 (450)
Q Consensus 132 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~v~-P~~~~~i~l~~G~R~dv~v~~~~ 198 (450)
....+.+|+...+||.-..+. +.++|.+..+---.+. .+ -.....+.+.+|+.++++++++-
T Consensus 61 ~~~~lpaG~Y~~irl~l~~~~----v~~~g~~~~l~vps~~-~~glk~~~~~~v~~g~~~~~vlDFDl 123 (139)
T PF14321_consen 61 ADAELPAGTYNQIRLVLDDAN----VVINGTTYPLKVPSGQ-QKGLKLNGNFTVSAGGSYDLVLDFDL 123 (139)
T ss_pred eccccCCCcEEEEEEEEeCCe----EEECCEEEEEEcCCCC-cceeEEcCCeEEcCCCEEEEEEEEec
Confidence 456788887557888777644 3333422222111111 00 01125678889999999999984
Done!