BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013076
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/395 (65%), Positives = 316/395 (80%), Gaps = 3/395 (0%)
Query: 40 IPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVT 99
I KLL FAK E+ WM+ IRRKIH+NPELGY+E ETS+LIRSEL+ +GIKY++PVA+T
Sbjct: 13 IQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAIT 72
Query: 100 GVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKIL 159
GV+G+IGTGEPPFVALRADMD+LP+QE VEWE+KSKI GKMHACGHDGHVTMLLGAAKIL
Sbjct: 73 GVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKIL 132
Query: 160 QEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGP 219
EHR L+GTVVL+FQPAEEG GA K+ E G L+ V AIFG+H+ +P G+ ASR G
Sbjct: 133 HEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGS 192
Query: 220 LLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKF 279
LAG+G FEAVI GKGGHAAIPQH+IDP++AAS++++SLQ LVSRE DPLDS+VVTV+K
Sbjct: 193 FLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKV 252
Query: 280 QGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCSATVDFLSKEKPF 339
GG AFNVIPDS+ IGGT RAF+ FTQL+QR++EVI QAAV RC+A+V+ +
Sbjct: 253 NGGNAFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREP 310
Query: 340 FPPTINNNDLHKYFQTVAGDMLDTQKVKVMAPVMGSEDFSFYQEVMPGYFFFLGMKNETL 399
PPT+NN DL+K F+ V D+L + APVMGSEDFS++ E +PG+F LGM++ET
Sbjct: 311 MPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGMQDETN 370
Query: 400 GKVESIHSPYFTLNEDALPYGAALHASLALRYLLE 434
G S HSP + +NED LPYGAA+HAS+A++YL E
Sbjct: 371 GYASS-HSPLYRINEDVLPYGAAIHASMAVQYLKE 404
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 275 bits (702), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 217/381 (56%), Gaps = 19/381 (4%)
Query: 57 MIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKH-PVAVTGVVGFI-GTGEPPFVA 114
+I RR +H++PEL +QE ET++ IR L++ I+ P TGV+ I G + P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 115 LRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKILQEHREELKGTVVLVF 174
+RAD+D+LP+QE + SK+ G HACGHD H ++G A +L + R ELKGTV +F
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 175 QPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFFEAVIGGK 234
QPAEE GA KVLEAGVL V+AIFG H P+LP+G + + GPL A FE VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 235 GGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVLI 294
GGHA+IP +SIDPI AA +I LQ +VSR L + VV++ + Q G ++NVIPD
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 295 GGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCSATVDFLSKEKPFFP--PTINNNDLHKY 352
GT R F KE+ + + V G AA A E +FP P++ N+
Sbjct: 274 EGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQA-------EFKWFPYLPSVQNDGTFLN 326
Query: 353 FQTVAGDMLDTQKVKV-MAPVMGSEDFSFYQEVMPGYFFFLGMKNETLGKVESIHSPYFT 411
+ A L Q V +P G EDF+ YQE +PG+F + G E H P FT
Sbjct: 327 AASEAAARLGYQTVHAEQSP--GGEDFALYQEKIPGFFVWXGTNG-----TEEWHHPAFT 379
Query: 412 LNEDALPYGAALHASLALRYL 432
L+E+AL + A LA+ L
Sbjct: 380 LDEEALTVASQYFAELAVIVL 400
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/394 (33%), Positives = 211/394 (53%), Gaps = 11/394 (2%)
Query: 42 KKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGV 101
++L+ K +E G MI IRR +HQ+PEL + E ET++ I ++ + V G+
Sbjct: 3 QQLIETLKSKE--GKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGI 60
Query: 102 VGFIGTGEP-PFVALRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKILQ 160
I +G+P +A+RAD D+LP+ E + S+ G MHACGHD H +L A+ L
Sbjct: 61 KVTIDSGKPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLA 120
Query: 161 EHREELKGTVVLVFQPAEE-GGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGP 219
E ++ G VV++ QPAEE GGA ++E GVL+ V+ + G+HV + G+V RPG
Sbjct: 121 EMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGY 180
Query: 220 LLAGSGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKF 279
+ G FF+ + GKGGH + P + D I+A S + +LQ +VSR P ++ VVT+ F
Sbjct: 181 VQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSF 240
Query: 280 QGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCSATVDFLSKEKPF 339
G G FNVI D V I G R + + +++ I+ + G + + T+++
Sbjct: 241 DGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDD---- 296
Query: 340 FPPTINNNDLHKYF-QTVAGDMLDTQKVKVMAPVMGSEDFSFYQEVMPGYFFFLGMKNET 398
+P N+ + +Y +T+ LD V++ P SEDF++Y + P F + G E
Sbjct: 297 YPALYNDPEFTEYVAKTLKEANLDF-GVEMCEPQPPSEDFAYYAKERPSAFIYTGAAVEN 355
Query: 399 LGKVESIHSPYFTLNEDALPYGAALHASLALRYL 432
G++ H P F ++E +L A ++ L YL
Sbjct: 356 -GEIYPHHHPKFNISEKSLLISAEAVGTVVLDYL 388
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 99 TGVVGFIGTGEP-PFVALRADMDSLPLQEMVEWEYK-------SKIPGKMHACGHDGHVT 150
GVV + TG P P +A R D D+L L E + ++ S G HACGHDGH
Sbjct: 97 AGVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTA 156
Query: 151 MLLGAAKILQEHREELKGTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPI 210
+ LG A +L+++ +L G + L+FQPAEEG GA + AGV++ V+ +H+ +P
Sbjct: 157 IGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPA 216
Query: 211 GEVASRPGPLLAGSGFFEAVIGGKGGHA-AIPQHSIDPILAASNVIVSLQHLVSREADPL 269
G V G + F+ G HA P+ + +LAA+ + L + A
Sbjct: 217 GTVVC-GGDNFXATTKFDVQFSGVAAHAGGKPEDGRNALLAAAQAALGLHAIPPHSA--- 272
Query: 270 DSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEVIIGQAA 322
+ V V Q G NV+P S L+ R S+ + +R + V+ G AA
Sbjct: 273 GASRVNVGVXQAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVAGAAA 325
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 47/285 (16%)
Query: 58 IGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVA--VTGVVGFIGTG-EPPFVA 114
I I +IH+ PELG +E S+ + L + + + +A TG + +G + P +
Sbjct: 19 IEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFIATYDSGLDGPAIG 78
Query: 115 LRADMDSLPLQEMVEWEYKSKIPGKMHACGHDGHVTMLLGAAKI-----LQEHREELKGT 169
A+ D+LP G HACGH+ ++G A + L++ +++ G
Sbjct: 79 FLAEYDALP--------------GLGHACGHN-----IIGTASVLGAIGLKQVIDQIGGK 119
Query: 170 VVLVFQPAEEGG-GGAHKV--LEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGF 226
VV++ PAEEGG G+ K ++AGV+++++ +H P E L
Sbjct: 120 VVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIH-----PGNETYKTIDTLAV--DV 172
Query: 227 FEAVIGGKGGHAAIPQ----HSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGG 282
+ GK HA+ +++D ++ N + L+ + ++ Q V GG
Sbjct: 173 LDVKFYGKSAHASENADEALNALDAXISYFNGVAQLRQHIKKD------QRVHGVILDGG 226
Query: 283 GAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCS 327
A N+IPD RA +++ L +++ ++ G A C
Sbjct: 227 KAANIIPDYTHARFYTRAXTRKELDILTEKVNQIARGAAIQTGCD 271
>pdb|3RZA|A Chain A, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
pdb|3RZA|B Chain B, Crystal Structure Of A Tripeptidase (Sav1512) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 2.10 A
Resolution
Length = 396
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 168 GTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGE-VASRPGPLLAGSGF 226
G + V EE G K L + +L+ A FG +D + +G V P L
Sbjct: 152 GQIQFVITVGEESGLIGAKELNSELLD---ADFGYAIDASADVGTTVVGAPTQXL----- 203
Query: 227 FEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVT--VAKFQGGGA 284
A I GK HA+ P+ + I A+ I SR ++ T + KF GG A
Sbjct: 204 ISAKIIGKTAHASTPKEGVSAINIAAKAI-------SRXKLGQVDEITTANIGKFHGGSA 256
Query: 285 FNVIPDSVLIGGTFRAFSKESF-TQLK 310
N++ D V++ R+ E TQ+K
Sbjct: 257 TNIVADEVILEAEARSHDPERIKTQVK 283
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 230 VIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREAD----PLDSQVVTVAKFQGGGAF 285
+ GK GH A P +I+P+ + ++ L V E + P Q+ + G GA
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNING--GTGAT 247
Query: 286 NVIPDSVLIGGTFRAFSKESFTQLKQRIEEVI 317
NVIP + + FR ++ + LKQR+ ++
Sbjct: 248 NVIPGELNVKFNFRFSTESTEAGLKQRVHAIL 279
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 116/281 (41%), Gaps = 29/281 (10%)
Query: 57 MIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKH-PVAVT-GVVGFIGTGEPPFVA 114
++ + + + + P + + Q+I L+K+G + + P T + GT EP +A
Sbjct: 5 VVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGTSEP-VIA 63
Query: 115 LRADMDSLPLQEMVEWE---YKSKIPGKM----HACGHDGHVTMLLGAAKILQEHREELK 167
D +P + +W + ++I M A G + ++ AA+ + K
Sbjct: 64 FAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHK 123
Query: 168 GTVVLVFQPAEEGGG--GAHKVLEAGVLEKVNAIFGLHVDPNLP--IGEVASRPGPLLAG 223
GT+ L+ EE G V+E + + + +P+ +G+V G
Sbjct: 124 GTIALLITSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVKNG---RRG 180
Query: 224 SGFFEAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREAD-------PLDSQVVTV 276
S I G GH A P + +PI A+ + LQ L + + D P Q+ +
Sbjct: 181 SITGNLYIQGIQGHVAYPHLAENPIHKAA---LFLQELTTYQWDKGNEFFPPTSLQIANI 237
Query: 277 AKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEEVI 317
G G+ NVIP + I R ++ + +KQ++ E++
Sbjct: 238 --HAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEML 276
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 147 GHVTMLLGAAKILQEHREELKGTVVLVFQPAEEGGG-GAHKVLEAGVLEKVNAIFGLHVD 205
G ++L K+L+E+ GT+ ++F EE G G+ +++ E A + L +
Sbjct: 122 GGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE---EAKLADYVLSFE 178
Query: 206 PNLPIGEVASRPGPLLAGSGFFEAVIGGKGGHA-AIPQHSIDPILAASNVIVSLQHLVSR 264
P E S +G + + I GK HA A P+ ++ ++ AS++++ ++ +
Sbjct: 179 PTSAGDEKLSLG---TSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK 235
Query: 265 EADPLDSQVVTVAKFQGGGAFNVIPDSVLIGGTFRAFSKESFTQLKQRIEE 315
+ + T+AK G N+IP S + R E F + +EE
Sbjct: 236 AKNLRFNW--TIAK--AGNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
>pdb|3GB0|A Chain A, Crystal Structure Of Aminopeptidase Pept (Np_980509.1)
From Bacillus Cereus Atcc 10987 At 2.04 A Resolution
Length = 373
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 168 GTVVLVFQPAEEGGGGAHKVLEAGVLEKVNAIFGLHVDPNLPIGEVASRPGPLLAGSGFF 227
GT+ + EE G K L+ E++ A +G +D + +GE+ P A
Sbjct: 131 GTIEFIITVGEESGLVGAKALD---RERITAKYGYALDSDGKVGEIVV-AAPTQAK---V 183
Query: 228 EAVIGGKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVV-TVAKFQGGGAFN 286
A+I GK HA + P S + ++ + + +DS+ + +F+GG N
Sbjct: 184 NAIIRGKTAHAGVA-----PEKGVSAITIAAKAIAKXPLGRIDSETTANIGRFEGGTQTN 238
Query: 287 VIPDSVLIGGTFRAFSKE 304
++ D V I R+ E
Sbjct: 239 IVCDHVQIFAEARSLINE 256
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 233 GKGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSV 292
GK H A P ++ + L+ L + E + + V + + + G + N +PD
Sbjct: 186 GKAAHGARPWXGVNAVDLLXEDYTRLKTLFAEENEDHWHRTVNLGRIRAGESTNKVPDVA 245
Query: 293 LIGGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCSATVDFLSKEKPF 339
R + L +I + + G ++ R FL+ + P+
Sbjct: 246 EGWFNIRVTEHDDPGALIDKIRKTVSGTVSIVRTVPV--FLAADSPY 290
>pdb|1EJO|H Chain H, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 220
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 234 KGGHAAIPQHSIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVL 293
GG P S+ AAS S + P + ++ VA GGA+ PDSV
Sbjct: 7 SGGDLVKPGGSLKLSCAASGFTFSSYTMSWVRQTP-EKRLEWVATISSGGAYTYYPDSV- 64
Query: 294 IGGTFRAFSKESFTQLKQRIEEVIIGQAAVQRCSATVDFLSKEKPFFPPTINNNDLHKYF 353
K FT E + Q + R T + + F + H+
Sbjct: 65 ---------KGRFTISDDNAESTLYLQMSSLRSEDTAMYYCVRRAFDSDVGFASWGHRTL 115
Query: 354 QTVAGDMLDTQKVKVMAPVMG 374
TV+ V +APV G
Sbjct: 116 VTVSAAKTTAPSVYPLAPVCG 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,779,856
Number of Sequences: 62578
Number of extensions: 581625
Number of successful extensions: 1227
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 15
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)