BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013077
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 82/126 (65%), Gaps = 4/126 (3%)
Query: 8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
GFRFHPTD+E+V ++L RK G P IA+V D+ K++PW+LP+R+ R WYFF
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYFF 74
Query: 68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
KY N R NR +G+WK+T D+ + RG+ +G+KK LVF+ G+ P G++T W
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRGVKTDW 133
Query: 128 VMHEYH 133
+MHEY
Sbjct: 134 IMHEYR 139
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
GFRF+PTDEE++ +L RK G DF IA++ D+ K++PW LP ++ +++ WYFF
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 79
Query: 68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
+ KY N R NR SG+WK+T D+ I E G+++G+KK LVF+ G+ P G +T W
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 128 VMHEYHSL------NASSYPEFVLFRLKKK 151
+MHEY + ++ ++VL R+ KK
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 8 GFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFF 67
GFRF+PTDEE++ +L RK G DF IA++ D+ K++PW LP ++ +++ WYFF
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76
Query: 68 NAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKW 127
+ KY N R NR SG+WK+T D+ I E G+++G+KK LVF+ G+ P G +T W
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 128 VMHEYHSL------NASSYPEFVLFRLKKK 151
+MHEY + ++ ++VL R+ KK
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 178 NTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNT---FSELPPNIQPERGTSINSS 234
+ N + G+P++ +L ++ ++ +GFH +T F P I ER I
Sbjct: 71 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQE 130
Query: 235 VFDRILQPMVQPERGTSINSSVFDRILQPMVQPEH--------GTSYSDGFNNEPSFLND 286
L+ MV+P IN +Q V+ E G GF+ EP L+
Sbjct: 131 SLYLALR-MVKP----GINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY 185
Query: 287 SCLETS 292
ET+
Sbjct: 186 DSRETN 191
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 178 NTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNT---FSELPPNIQPERGTSINSS 234
+ N + G+P++ +L ++ ++ +GFH +T F P I ER I
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQE 131
Query: 235 VFDRILQPMVQPERGTSINSSVFDRILQPMVQPEH--------GTSYSDGFNNEPSFLND 286
L+ MV+P IN +Q V+ E G GF+ EP L+
Sbjct: 132 SLYLALR-MVKP----GINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY 186
Query: 287 SCLETS 292
ET+
Sbjct: 187 DSRETN 192
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 178 NTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNT---FSELPPNIQPERGTSINSS 234
+ N + G+P++ +L ++ ++ +GFH +T F P I ER I
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQE 131
Query: 235 VFDRILQPMVQPERGTSINSSVFDRILQPMVQPEH--------GTSYSDGFNNEPSFLND 286
L+ MV+P IN +Q V+ E G GF+ EP L+
Sbjct: 132 SLYLALR-MVKP----GINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY 186
Query: 287 SCLETS 292
ET+
Sbjct: 187 DSRETN 192
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 178 NTNPQINRGLPEEWQLFLSDTELDYNLLADSNGFHDNT---FSELPPNIQPERGTSINSS 234
+ N + G+P++ +L ++ ++ +GFH +T F P I ER I
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQE 131
Query: 235 VFDRILQPMVQPERGTSINSSVFDRILQPMVQPEH--------GTSYSDGFNNEPSFLND 286
L+ MV+P IN +Q V+ E G GF+ EP L+
Sbjct: 132 SLYLALR-MVKP----GINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY 186
Query: 287 SCLETS 292
ET+
Sbjct: 187 DSRETN 192
>pdb|2ATZ|A Chain A, Crystal Structure Of Protein Hp0184 From Helicobacter
Pylori
Length = 180
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 25/143 (17%)
Query: 74 YANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYH 133
Y +R+N S + K ++I + NL+ +V N ++ +Y+
Sbjct: 35 YNKFQRVNAXLTSSLIQKHLK---------REIEIAHNLILRNDKVEN------IVFDYN 79
Query: 134 SLNASSYPEFVLFRLKKKSGAKPDARNEPTPQDL---------AFDSGNRAIENTNPQIN 184
N + L+++ A N TP L G R ++ + ++
Sbjct: 80 GRNPERFYHKAQLLLREEGFXNFTAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSXKLA 139
Query: 185 RGLPEEWQLFLSDT-ELDYNLLA 206
+GLP+EW++F S+ ++N+LA
Sbjct: 140 QGLPKEWKVFPSNEWPKEFNILA 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,689,433
Number of Sequences: 62578
Number of extensions: 658891
Number of successful extensions: 1084
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 11
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)