Query 013077
Match_columns 450
No_of_seqs 183 out of 900
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:46:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.8E-54 6.2E-59 401.0 14.5 146 4-153 14-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.3E-54 2.1E-58 396.3 13.9 148 3-154 15-168 (171)
3 1cmb_A Met APO-repressor; DNA- 18.0 1.1E+02 0.0036 25.7 3.7 39 12-55 50-88 (104)
4 1ldd_A APC2WHB, anaphase promo 15.3 64 0.0022 25.7 1.7 27 6-33 37-64 (74)
5 2c4b_A Barnase mcoeeti fusion; 10.6 1E+02 0.0034 27.7 1.6 63 14-92 4-73 (143)
6 1wgr_A Growth factor receptor- 8.8 75 0.0026 26.6 0.1 54 336-415 27-80 (100)
7 4dox_A Coat protein; all helix 6.3 1.7E+02 0.0057 28.0 1.2 20 8-27 158-177 (226)
8 3rhf_A Putative polyphosphate 6.2 82 0.0028 31.1 -1.0 29 6-34 101-133 (289)
9 2jv2_A Putative uncharacterize 5.9 3E+02 0.01 22.1 2.3 27 16-44 27-53 (83)
10 1f6k_A N-acetylneuraminate lya 5.2 2.3E+02 0.0078 27.1 1.4 18 5-23 106-123 (293)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.8e-54 Score=400.98 Aligned_cols=146 Identities=43% Similarity=0.871 Sum_probs=131.7
Q ss_pred CCCCceeECCChHHHHHHHHHHHHCCCCCCCCceeccCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCCcccc
Q 013077 4 HGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINRT 83 (450)
Q Consensus 4 ~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nRa 83 (450)
.|||||||+|||||||.|||++|+.|.+++.++|.+ +|||+++||+||+.+..+ +.+|||||++++||++|.|+||+
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~e-vDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAE-VDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEE-CCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeee-cccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 799999999999999999999999999999999999 999999999999988766 78999999999999999999999
Q ss_pred CCCcEEEeeccCeeEEcCCCceEEEEEEEEeeeCcCCCCCccCeEEEEEEeCCCCCC-----------CceEEEEEEecC
Q 013077 84 TNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASSY-----------PEFVLFRLKKKS 152 (450)
Q Consensus 84 tggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~Gr~p~G~KT~WVMHEYrL~~~~~~-----------~e~VLCRIykK~ 152 (450)
|++||||+||++|+|... |.+||+||+|+||.|++|+|.||+|+||||+|...... .+|||||||+|+
T Consensus 91 t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp ETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred cCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 999999999999999874 56999999999999999999999999999999987431 289999999986
Q ss_pred C
Q 013077 153 G 153 (450)
Q Consensus 153 ~ 153 (450)
+
T Consensus 170 ~ 170 (174)
T 3ulx_A 170 N 170 (174)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.3e-54 Score=396.25 Aligned_cols=148 Identities=43% Similarity=0.839 Sum_probs=129.8
Q ss_pred CCCCCceeECCChHHHHHHHHHHHHCCCCCCCCceeccCCCCCCCCCCCCccCCCCCCCceEEEEecCCCCCCCCCCccc
Q 013077 3 GHGVVGFRFHPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRSSMPKEDRVWYFFNAPVPKYANSKRINR 82 (450)
Q Consensus 3 ~~LPpGfRF~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nR 82 (450)
..|||||||+|||||||.|||++|+.|.+++.++|++ +|||+++||+||+.+..+ +.+|||||++++||++|.|+||
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e-~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAE-IDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEE-CCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEee-cccccCChhHhhchhhcC--CccEEEEeccccccCCCCcccc
Confidence 4799999999999999999999999999999999999 999999999999988765 8999999999999999999999
Q ss_pred cCCCcEEEeeccCeeEEcCCCceEEEEEEEEeeeCcCCCCCccCeEEEEEEeCCCCC------CCceEEEEEEecCCC
Q 013077 83 TTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTKWVMHEYHSLNASS------YPEFVLFRLKKKSGA 154 (450)
Q Consensus 83 atggGyWKatG~~K~I~~~~g~vVG~KKtLvFY~Gr~p~G~KT~WVMHEYrL~~~~~------~~e~VLCRIykK~~~ 154 (450)
+|++||||+||++|+|... +.+||+||+|+||+|++|+|.||+|+||||+|..... ..+|||||||+|+..
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999974 4699999999999999999999999999999998752 139999999999764
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=17.98 E-value=1.1e+02 Score=25.67 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCCCceeccCCCCCCCCCCCCccC
Q 013077 12 HPTDEEIVTYFLERKMCGLDFPAHTIADVVDVCKYEPWELPQRS 55 (450)
Q Consensus 12 ~PTDEELV~~YL~~Ki~G~plp~~vI~e~vDVY~~ePWdLP~~~ 55 (450)
|-|-.||++.-...-..|+|||.+ .|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D-----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD-----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG-----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc-----hhhhhcCCccchHHH
Confidence 578899999888888999999975 688899999998643
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=15.34 E-value=64 Score=25.73 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=22.9
Q ss_pred CCceeECC-ChHHHHHHHHHHHHCCCCCC
Q 013077 6 VVGFRFHP-TDEEIVTYFLERKMCGLDFP 33 (450)
Q Consensus 6 PpGfRF~P-TDEELV~~YL~~Ki~G~plp 33 (450)
|.|+.|.. |++||-. ||.+++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999987 999999887653
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=10.62 E-value=1e+02 Score=27.67 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCCCceecc-CCCCCCCCCC------CCccCCCCCCCceEEEEecCCCCCCCCCCccccCCC
Q 013077 14 TDEEIVTYFLERKMCGLDFPAHTIADV-VDVCKYEPWE------LPQRSSMPKEDRVWYFFNAPVPKYANSKRINRTTNS 86 (450)
Q Consensus 14 TDEELV~~YL~~Ki~G~plp~~vI~e~-vDVY~~ePWd------LP~~~~~g~~e~eWYFFs~r~rKy~nG~R~nRatgg 86 (450)
|..+-|..||.. ...||..+|... ++--+.+|.+ +|++...+ .. |..+.+.-|. ..+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG----~v--F~NrE~~LP~-------~~~ 67 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGG----DI--FSNREGKLPG-------KSG 67 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEE----EE--ECCTTCCSCC-------CTT
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCC----ce--EecCCCcCCC-------CCC
Confidence 445556678887 456788776641 5556777754 45554322 22 5555444332 236
Q ss_pred cEEEee
Q 013077 87 GFWKST 92 (450)
Q Consensus 87 GyWKat 92 (450)
|+|+-.
T Consensus 68 ~~y~E~ 73 (143)
T 2c4b_A 68 RTWREA 73 (143)
T ss_dssp CCEEEE
T ss_pred CEEEEE
Confidence 788643
No 6
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=8.82 E-value=75 Score=26.65 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=37.3
Q ss_pred ccCchhhHHHHhhCCCCCccccchhccchhheeeeecccccCCCCcceeeeeeeccccCCCCCCccccchhhhhhhccCc
Q 013077 336 QSSDADSKIYQQHGKVPGTSNVFYEKTHAQMETVWALSETSSSSEGYGIMDFDVSSVNSDTDLPGIVGHESVVDELQHTP 415 (450)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (450)
.+.+|=.+|.+. ..+|.|.++..-|||.|+..- +|+-- .+-+||.||+.|..-|
T Consensus 27 ~~~~Ta~dv~~~----------L~~K~~~~~~~~WaLvE~~P~---L~~ER-------------~~EDHE~vvevl~~W~ 80 (100)
T 1wgr_A 27 AAGATARHVCEM----------LVQRAHALSDETWGLVECHPH---LALER-------------GLEDHESVVEVQAAWP 80 (100)
T ss_dssp CTTCCHHHHHHH----------HHCSSSCCCCCCCCEEEEETT---TTEEE-------------EECSSSCHHHHHTTSC
T ss_pred CCCCcHHHHHHH----------HHHHcCCCCCCCeEEEEecCC---CCcEE-------------eccCchhHHHHHhhCc
Confidence 344555566654 568999999999999998653 11111 2668999999987643
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=6.32 E-value=1.7e+02 Score=28.03 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=15.2
Q ss_pred ceeECCChHHHHHHHHHHHH
Q 013077 8 GFRFHPTDEEIVTYFLERKM 27 (450)
Q Consensus 8 GfRF~PTDEELV~~YL~~Ki 27 (450)
|..+.||++|+|.|-..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999997665554
No 8
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=6.23 E-value=82 Score=31.08 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCceeEC----CChHHHHHHHHHHHHCCCCCCC
Q 013077 6 VVGFRFH----PTDEEIVTYFLERKMCGLDFPA 34 (450)
Q Consensus 6 PpGfRF~----PTDEELV~~YL~~Ki~G~plp~ 34 (450)
|.|||.+ ||++|+.-.||.+-....|-..
T Consensus 101 PRg~~V~a~~~Pt~eE~~~~ylwR~~~~lP~~G 133 (289)
T 3rhf_A 101 PQGVQLTAFKAPTDEEKSHDFLWRIEKQVPAAG 133 (289)
T ss_dssp GGGEEEEECCSCCHHHHTSCTTHHHHTTCCCTT
T ss_pred cCceEEEECCCCChhhhcCCHHHHHHHhCCCCC
Confidence 6677775 9999999999999777665433
No 9
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=5.90 E-value=3e+02 Score=22.07 Aligned_cols=27 Identities=7% Similarity=0.192 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCceeccCCCC
Q 013077 16 EEIVTYFLERKMCGLDFPAHTIADVVDVC 44 (450)
Q Consensus 16 EELV~~YL~~Ki~G~plp~~vI~e~vDVY 44 (450)
..+ ..||++++.|+|+...-+.. ++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~-i~~~ 53 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIG-ISIL 53 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEE-EEET
T ss_pred ccH-HHHHHHHHCCCCccCCCEEE-EeeC
Confidence 455 46999999999976643434 4543
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=5.17 E-value=2.3e+02 Score=27.06 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=13.5
Q ss_pred CCCceeECCChHHHHHHHH
Q 013077 5 GVVGFRFHPTDEEIVTYFL 23 (450)
Q Consensus 5 LPpGfRF~PTDEELV~~YL 23 (450)
+||- -|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 3554 47899999999774
Done!