Query 013078
Match_columns 450
No_of_seqs 175 out of 1310
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 4.2E-39 9E-44 351.2 34.4 283 164-449 2-336 (621)
2 COG0475 KefB Kef-type K+ trans 100.0 1.8E-38 4E-43 329.5 33.1 280 165-448 4-340 (397)
3 PRK03659 glutathione-regulated 100.0 4.7E-37 1E-41 334.2 33.9 277 167-449 5-333 (601)
4 PRK10669 putative cation:proto 100.0 3.6E-36 7.7E-41 324.7 34.5 282 166-449 5-344 (558)
5 COG4651 RosB Kef-type K+ trans 100.0 1.7E-36 3.7E-41 295.7 22.0 286 162-449 1-344 (408)
6 PLN03159 cation/H(+) antiporte 100.0 5.5E-35 1.2E-39 327.4 30.5 275 167-448 43-391 (832)
7 TIGR00932 2a37 transporter, mo 100.0 2.3E-28 4.9E-33 241.1 26.5 219 177-399 2-273 (273)
8 PRK05326 potassium/proton anti 100.0 1E-26 2.3E-31 251.5 30.2 275 167-445 6-339 (562)
9 PF00999 Na_H_Exchanger: Sodiu 99.9 5.5E-29 1.2E-33 255.2 -1.7 271 173-448 2-333 (380)
10 KOG1650 Predicted K+/H+-antipo 99.9 4.2E-24 9.1E-29 237.4 21.7 275 167-448 23-376 (769)
11 TIGR00831 a_cpa1 Na+/H+ antipo 99.8 3E-17 6.6E-22 176.6 28.4 222 173-400 4-285 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 99.8 5E-17 1.1E-21 178.8 29.5 269 175-444 22-366 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.7 4.3E-15 9.4E-20 156.3 30.1 276 167-444 6-352 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.6 2.4E-13 5.2E-18 147.3 27.0 218 220-444 128-363 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.6 1.9E-13 4.1E-18 140.3 22.4 263 174-443 14-335 (574)
16 PRK14853 nhaA pH-dependent sod 99.1 6.4E-09 1.4E-13 108.7 20.8 186 232-443 131-344 (423)
17 KOG1965 Sodium/hydrogen exchan 99.1 9.1E-09 2E-13 109.9 21.8 260 168-431 36-376 (575)
18 KOG4505 Na+/H+ antiporter [Ino 99.0 7E-09 1.5E-13 104.0 14.4 222 220-443 127-365 (467)
19 TIGR00773 NhaA Na+/H+ antiport 98.5 2.8E-06 6E-11 87.7 15.2 171 235-431 124-303 (373)
20 PRK14856 nhaA pH-dependent sod 97.2 0.008 1.7E-07 63.5 14.2 182 235-443 139-379 (438)
21 KOG1966 Sodium/hydrogen exchan 97.1 0.00041 8.9E-09 74.9 3.7 203 218-431 156-376 (670)
22 PRK09560 nhaA pH-dependent sod 97.1 0.013 2.9E-07 61.1 14.5 170 235-431 131-312 (389)
23 PRK09561 nhaA pH-dependent sod 96.9 0.025 5.5E-07 58.9 14.5 170 235-431 131-310 (388)
24 PRK14854 nhaA pH-dependent sod 96.7 0.041 8.8E-07 57.3 14.8 184 235-443 127-329 (383)
25 PRK03562 glutathione-regulated 96.7 0.02 4.3E-07 63.6 13.2 112 336-447 12-124 (621)
26 PF06965 Na_H_antiport_1: Na+/ 96.5 0.0099 2.1E-07 61.8 8.5 170 235-431 127-310 (378)
27 PRK14855 nhaA pH-dependent sod 96.4 0.051 1.1E-06 57.4 13.1 179 235-443 134-364 (423)
28 TIGR00932 2a37 transporter, mo 96.4 0.032 7E-07 55.1 11.2 107 342-448 5-113 (273)
29 PRK03659 glutathione-regulated 96.3 0.052 1.1E-06 60.1 13.2 111 337-447 13-124 (601)
30 COG0786 GltS Na+/glutamate sym 96.2 0.94 2E-05 47.5 20.8 107 335-441 224-341 (404)
31 COG3004 NhaA Na+/H+ antiporter 96.1 0.21 4.5E-06 51.0 14.9 169 234-431 133-313 (390)
32 COG0475 KefB Kef-type K+ trans 96.0 0.065 1.4E-06 56.4 11.9 114 334-447 11-128 (397)
33 PRK05326 potassium/proton anti 95.9 0.11 2.5E-06 56.8 13.7 111 338-448 15-129 (562)
34 PF05684 DUF819: Protein of un 95.9 1.5 3.2E-05 46.1 20.9 84 358-443 245-328 (378)
35 TIGR00831 a_cpa1 Na+/H+ antipo 95.9 0.078 1.7E-06 57.8 12.0 112 337-448 6-118 (525)
36 TIGR00844 c_cpa1 na(+)/h(+) an 95.7 0.14 3E-06 58.1 13.4 102 346-448 31-142 (810)
37 PRK10669 putative cation:proto 95.5 0.17 3.6E-06 55.5 12.8 110 338-447 15-125 (558)
38 TIGR00210 gltS sodium--glutama 93.8 11 0.00023 40.0 25.3 89 352-441 244-337 (398)
39 PF03601 Cons_hypoth698: Conse 93.2 1.4 3.1E-05 44.8 12.8 98 350-447 23-123 (305)
40 COG2855 Predicted membrane pro 92.9 1.3 2.8E-05 45.6 11.8 108 338-445 22-130 (334)
41 TIGR00783 ccs citrate carrier 92.8 1.9 4.1E-05 44.7 12.9 98 352-449 203-308 (347)
42 PLN03159 cation/H(+) antiporte 91.9 1.2 2.6E-05 51.4 11.3 67 342-408 56-133 (832)
43 PF00999 Na_H_Exchanger: Sodiu 91.2 0.044 9.6E-07 56.4 -1.1 106 343-448 10-121 (380)
44 COG0025 NhaP NhaP-type Na+/H+ 91.1 3 6.5E-05 44.4 12.6 65 384-448 64-130 (429)
45 PRK12460 2-keto-3-deoxyglucona 90.5 1.8 4E-05 44.1 9.8 99 343-443 154-254 (312)
46 TIGR00698 conserved hypothetic 90.3 5.1 0.00011 41.4 13.0 96 351-446 29-128 (335)
47 TIGR03082 Gneg_AbrB_dup membra 88.6 9.7 0.00021 34.8 12.3 102 339-442 5-111 (156)
48 COG4651 RosB Kef-type K+ trans 86.8 3.4 7.4E-05 42.2 8.6 112 336-447 13-125 (408)
49 PF03956 DUF340: Membrane prot 83.7 3.9 8.4E-05 38.9 7.2 88 357-446 2-94 (191)
50 TIGR01625 YidE_YbjL_dupl AspT/ 78.4 10 0.00022 34.8 7.8 87 352-438 20-116 (154)
51 COG3180 AbrB Putative ammonia 77.8 95 0.0021 32.5 23.7 105 334-441 190-300 (352)
52 TIGR03802 Asp_Ala_antiprt aspa 77.7 13 0.00029 41.0 9.8 82 352-439 34-119 (562)
53 PF03616 Glt_symporter: Sodium 77.0 1E+02 0.0022 32.3 24.5 90 352-441 246-340 (368)
54 PF03390 2HCT: 2-hydroxycarbox 75.1 59 0.0013 34.7 13.3 104 346-449 264-375 (414)
55 PF05145 AmoA: Putative ammoni 74.2 1.1E+02 0.0023 31.3 21.4 106 334-442 157-268 (318)
56 TIGR00210 gltS sodium--glutama 73.8 72 0.0016 33.8 13.6 61 382-442 65-128 (398)
57 PF06826 Asp-Al_Ex: Predicted 72.2 20 0.00043 33.5 8.1 89 350-438 20-115 (169)
58 PRK04125 murein hydrolase regu 71.1 82 0.0018 28.6 12.0 51 377-427 56-111 (141)
59 TIGR03802 Asp_Ala_antiprt aspa 70.8 24 0.00053 39.0 9.7 86 353-438 415-509 (562)
60 TIGR00840 b_cpa1 sodium/hydrog 69.1 59 0.0013 36.0 12.2 66 383-448 69-143 (559)
61 PRK04972 putative transporter; 68.5 26 0.00057 38.7 9.4 83 352-439 36-121 (558)
62 COG0786 GltS Na+/glutamate sym 65.7 34 0.00073 36.2 8.9 62 381-442 66-130 (404)
63 PF03616 Glt_symporter: Sodium 63.9 55 0.0012 34.2 10.3 62 382-443 65-129 (368)
64 PRK03818 putative transporter; 60.6 47 0.001 36.7 9.5 82 357-438 34-121 (552)
65 COG3180 AbrB Putative ammonia 60.6 1.2E+02 0.0025 31.8 11.7 102 338-442 15-122 (352)
66 COG3493 CitS Na+/citrate sympo 60.4 1.5E+02 0.0033 31.4 12.3 103 346-449 282-394 (438)
67 TIGR00946 2a69 he Auxin Efflux 58.5 41 0.00089 34.0 8.0 84 353-436 181-266 (321)
68 PRK04125 murein hydrolase regu 56.8 82 0.0018 28.6 8.7 84 165-248 6-119 (141)
69 PRK04972 putative transporter; 56.8 38 0.00082 37.5 7.9 90 350-439 407-505 (558)
70 PRK01658 holin-like protein; V 53.9 1.1E+02 0.0024 27.0 8.9 83 166-248 4-116 (122)
71 PRK01821 hypothetical protein; 53.4 1.7E+02 0.0037 26.3 12.0 52 378-429 59-115 (133)
72 PRK01821 hypothetical protein; 49.6 1.3E+02 0.0027 27.1 8.7 85 165-249 8-122 (133)
73 PF03977 OAD_beta: Na+-transpo 47.9 2E+02 0.0043 30.0 10.8 60 383-444 68-127 (360)
74 TIGR00793 kdgT 2-keto-3-deoxyg 47.5 33 0.00071 35.1 5.1 73 356-432 174-248 (314)
75 TIGR00698 conserved hypothetic 46.8 3.5E+02 0.0076 28.0 22.9 35 372-406 271-305 (335)
76 PRK01658 holin-like protein; V 45.7 2.1E+02 0.0046 25.2 12.2 53 377-429 53-110 (122)
77 PF03547 Mem_trans: Membrane t 40.4 1.6E+02 0.0035 30.1 9.2 80 359-439 12-94 (385)
78 TIGR03136 malonate_biotin Na+- 38.7 68 0.0015 33.8 5.9 60 384-444 105-164 (399)
79 PF03812 KdgT: 2-keto-3-deoxyg 37.4 37 0.00081 34.8 3.7 48 357-406 175-222 (314)
80 PRK03818 putative transporter; 36.8 1.3E+02 0.0029 33.2 8.2 83 356-438 403-495 (552)
81 PF13642 DUF4144: protein stru 36.2 18 0.0004 30.9 1.2 24 137-160 32-55 (101)
82 PRK14853 nhaA pH-dependent sod 35.3 1.1E+02 0.0024 32.8 7.0 22 382-403 66-87 (423)
83 PF05145 AmoA: Putative ammoni 35.0 2.5E+02 0.0053 28.7 9.4 84 357-443 3-90 (318)
84 PRK09371 gas vesicle synthesis 34.9 25 0.00054 27.9 1.6 16 57-72 5-20 (68)
85 PF03390 2HCT: 2-hydroxycarbox 33.3 4.7E+02 0.01 28.1 11.2 93 350-442 57-155 (414)
86 CHL00118 atpG ATP synthase CF0 29.9 1.5E+02 0.0032 27.0 6.1 28 299-326 28-55 (156)
87 KOG1965 Sodium/hydrogen exchan 29.5 1.5E+02 0.0033 33.0 7.0 63 384-448 103-174 (575)
88 PRK13453 F0F1 ATP synthase sub 29.0 1.5E+02 0.0032 27.4 6.1 27 300-326 25-51 (173)
89 COG3263 NhaP-type Na+/H+ and K 28.3 7E+02 0.015 27.3 11.4 65 383-447 64-129 (574)
90 PRK14471 F0F1 ATP synthase sub 27.6 1.2E+02 0.0026 27.6 5.2 29 298-326 13-41 (164)
91 TIGR03082 Gneg_AbrB_dup membra 27.4 95 0.0021 28.2 4.4 32 174-205 2-35 (156)
92 PRK14854 nhaA pH-dependent sod 27.3 84 0.0018 33.2 4.4 23 382-404 60-82 (383)
93 PF03601 Cons_hypoth698: Conse 27.0 6.9E+02 0.015 25.5 19.7 34 373-406 264-297 (305)
94 PRK05346 Na(+)-translocating N 26.3 58 0.0013 32.5 3.0 92 8-100 9-102 (256)
95 PRK14855 nhaA pH-dependent sod 26.0 83 0.0018 33.7 4.2 24 382-405 67-90 (423)
96 PRK08475 F0F1 ATP synthase sub 25.8 2.6E+02 0.0057 25.7 7.1 27 300-326 29-55 (167)
97 TIGR00841 bass bile acid trans 25.4 3.1E+02 0.0066 27.4 8.0 86 357-444 144-231 (286)
98 PRK08476 F0F1 ATP synthase sub 24.7 1.6E+02 0.0034 26.4 5.2 29 298-326 12-40 (141)
99 PRK05759 F0F1 ATP synthase sub 24.3 1.5E+02 0.0032 26.6 5.0 27 300-326 11-37 (156)
100 PRK09903 putative transporter 24.3 3.1E+02 0.0067 27.6 7.9 47 355-401 174-222 (314)
101 PRK09560 nhaA pH-dependent sod 24.2 91 0.002 33.0 4.0 24 382-405 63-86 (389)
102 TIGR00946 2a69 he Auxin Efflux 23.6 5.4E+02 0.012 25.8 9.5 85 356-441 13-102 (321)
103 PRK09561 nhaA pH-dependent sod 23.4 97 0.0021 32.8 4.1 24 382-405 63-86 (388)
104 TIGR00832 acr3 arsenical-resis 22.7 3E+02 0.0066 28.2 7.5 88 357-444 185-282 (328)
105 PF03788 LrgA: LrgA family; I 22.1 4.8E+02 0.01 21.9 9.2 48 377-424 38-90 (96)
106 PRK14856 nhaA pH-dependent sod 21.4 1.1E+02 0.0024 33.0 4.0 24 382-405 72-95 (438)
107 PRK05274 2-keto-3-deoxyglucona 21.1 96 0.0021 32.0 3.5 78 355-434 175-252 (326)
108 COG1380 Putative effector of m 21.0 6E+02 0.013 22.7 8.1 83 166-248 5-117 (128)
109 PRK13454 F0F1 ATP synthase sub 20.9 1.8E+02 0.0039 27.1 5.0 27 300-326 38-64 (181)
110 COG1510 Predicted transcriptio 20.7 1.9E+02 0.0041 27.3 5.0 57 181-250 14-70 (177)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=4.2e-39 Score=351.23 Aligned_cols=283 Identities=22% Similarity=0.355 Sum_probs=244.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhH------HH--------------------
Q 013078 164 VDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ-------------------- 217 (450)
Q Consensus 164 ~d~~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l------~q-------------------- 217 (450)
.|++++.++.+++.++.+++++++|+|+|+++|||++|+++||++++++++. .|
T Consensus 2 ~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~ 81 (621)
T PRK03562 2 MDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLW 81 (621)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 4677999999999999999999999999999999999999999999987531 11
Q ss_pred --------------------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHH
Q 013078 218 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG 271 (450)
Q Consensus 218 --------------------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~i 271 (450)
++|++|..++++|.+++.|||++++++++|++..++++||.+++++++||+.++
T Consensus 82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i 161 (621)
T PRK03562 82 KLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI 161 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 013078 272 LLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 351 (450)
Q Consensus 272 lllall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~l 351 (450)
+++++++.++..+... ........+...++++++.++++||+.+|+++|+.+. +++|.+...++.++++++++++.+
T Consensus 162 ~ll~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~~~e~~~~~~l~lv~~~a~la~~~ 238 (621)
T PRK03562 162 PLVAMIPLLAASGAST-TLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS--GLREVFTAVALFLVFGFGLLMEEV 238 (621)
T ss_pred HHHHHHHHHccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999998876532110 1111112222223334445667889999999998764 468888888889999999999999
Q ss_pred chhHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 352 GLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
|+|+++|||+||+++++.++++++++.++|++++|.|+||+++||++|+..+..+|+.++.+++..+++|++++++.+++
T Consensus 239 Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~ 318 (621)
T PRK03562 239 GLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP 318 (621)
T ss_pred CccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888777777778899999999999999
Q ss_pred cCCChHHHHHHhccCCCC
Q 013078 432 FGYSMRTSFLVSWLPKLM 449 (450)
Q Consensus 432 ~g~~~r~a~~vGl~La~m 449 (450)
+|+++++++.+|+.|+|.
T Consensus 319 ~g~~~~~a~~~gl~L~~~ 336 (621)
T PRK03562 319 LGVPRKQRRWFAVLLGQG 336 (621)
T ss_pred hCCCHhHHHHHHHHHhcc
Confidence 999999999999999984
No 2
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=329.52 Aligned_cols=280 Identities=32% Similarity=0.550 Sum_probs=246.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhh-------HHH--------------------
Q 013078 165 DLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE-------LVQ-------------------- 217 (450)
Q Consensus 165 d~~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~-------l~q-------------------- 217 (450)
....+.++.+++.++.+.+++++|+|+|+++||+++|+++||.++..+.+ +.|
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~ 83 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLK 83 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHH
Confidence 34578899999999999999999999999999999999999965544321 111
Q ss_pred --------------------------H--hcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHH
Q 013078 218 --------------------------L--CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 269 (450)
Q Consensus 218 --------------------------l--~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~ 269 (450)
+ +|+++..++++|.+++.||+++++|+++|+|..++++||.+++++++||+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~ 163 (397)
T COG0475 84 KVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIA 163 (397)
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 1 578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 013078 270 VGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSD 349 (450)
Q Consensus 270 ~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae 349 (450)
+++++++++.+.++++... ..+...+....++..+.+..+||+.|+++|+..+. +.+|.....++++++..++++|
T Consensus 164 ~i~lLai~~~l~~~g~~~~--~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~--~~~e~~~~~~l~i~l~~a~l~e 239 (397)
T COG0475 164 AILLLAIVPALAGGGSGSV--GFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT--ESSELFILFVLLLVLGAAYLAE 239 (397)
T ss_pred HHHHHHHHHHHccCCCccH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986544311 11233444555566666677899999999999874 5788899999999999999999
Q ss_pred HhchhHHHHHHHHHHHhcCCcch-hhHHHhhhcHHH-HHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 350 KLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRN-LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 427 (450)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~~-~~l~~~ie~i~~-~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l 427 (450)
.+|+|+++|||+||+++++.+++ ++++++++|+++ +|+|+||+++|+.+|++.+..++...+.++...++.|.+++++
T Consensus 240 ~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~ 319 (397)
T COG0475 240 LLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYL 319 (397)
T ss_pred HhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 799999999998 9999999999999999999999888888888999999999999
Q ss_pred HHHhcCCChHHHHHHhccCCC
Q 013078 428 VTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 428 ~~~~~g~~~r~a~~vGl~La~ 448 (450)
..+..|++.|++...|+.++|
T Consensus 320 ~~~~~g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 320 AARLLGFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHHHHcCcHHHHHHHHhhhhh
Confidence 999999999999999999876
No 3
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=4.7e-37 Score=334.15 Aligned_cols=277 Identities=29% Similarity=0.444 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhH------HH-----------------------
Q 013078 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ----------------------- 217 (450)
Q Consensus 167 ~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l------~q----------------------- 217 (450)
+++.++.+++.++.+.+++++|+|+|+++|||++|+++||++++++++. .+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4688899999999999999999999999999999999999999987521 11
Q ss_pred -----------------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHHH
Q 013078 218 -----------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLF 274 (450)
Q Consensus 218 -----------------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~illl 274 (450)
++|+++..++++|.++++|||+++.++++|++..++++||++++++++||+.+++++
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll 164 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPAL 164 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchh
Q 013078 275 ALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLS 354 (450)
Q Consensus 275 all~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls 354 (450)
++++.+++.......+..... .++ .+++.++.+||+.+++++|+.+. +++|.+.+.++.++++++++++.+|+|
T Consensus 165 ~l~~~l~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~l~~vl~~a~l~~~~Gls 238 (601)
T PRK03659 165 ALVPLLAGSADEHFDWMKIGM---KVL-AFAGMLIGGRYLLRPLFRFIAAS--GVREVFTAAALLLVLGSALFMDALGLS 238 (601)
T ss_pred HHHHHHhcCCCcchHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999887653322111222211 122 22344566889999999998763 468998898999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013078 355 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 434 (450)
Q Consensus 355 ~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~ 434 (450)
+++|||+||+++++++++++++++++|++++|.|+||+++||.+|+..+.++|+.++.+++..+++|++++++..+.+|+
T Consensus 239 ~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~ 318 (601)
T PRK03659 239 MALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGL 318 (601)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999998888877777788889999999999999999
Q ss_pred ChHHHHHHhccCCCC
Q 013078 435 SMRTSFLVSWLPKLM 449 (450)
Q Consensus 435 ~~r~a~~vGl~La~m 449 (450)
++|+++.+|+.|+|.
T Consensus 319 ~~~~al~~g~~L~~~ 333 (601)
T PRK03659 319 RSSERMQFAGVLSQG 333 (601)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999999874
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=324.75 Aligned_cols=282 Identities=28% Similarity=0.450 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhH------HH----------------------
Q 013078 166 LRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ---------------------- 217 (450)
Q Consensus 166 ~~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l------~q---------------------- 217 (450)
.+++.+++++++.+.+++++++|+|+|+++|||++|+++||++++.+++. .+
T Consensus 5 ~~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~ 84 (558)
T PRK10669 5 TPLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV 84 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH
Confidence 36788999999999999999999999999999999999999999886421 11
Q ss_pred ------------------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHH
Q 013078 218 ------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLL 273 (450)
Q Consensus 218 ------------------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~ill 273 (450)
.+|+++.+++++|++++.||+++++|+++|+|..++++||++++++++||+..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~ 164 (558)
T PRK10669 85 KSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLT 164 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CC-chh-hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH-
Q 013078 274 FALLPVLGGN---SG-LLQ-GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWC- 347 (450)
Q Consensus 274 lall~~L~~~---~~-~~~-~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~i- 347 (450)
+++++.+... +. ... ....+.+.+...++++++..+++|++.+|+.++..+. +.+|.+.+.++++++++++.
T Consensus 165 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~e~~~l~~l~~~l~~a~~~ 242 (558)
T PRK10669 165 LVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAAT--GSRELFTLSVLALALGIAFGA 242 (558)
T ss_pred HHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHH
Confidence 9888776531 11 110 1122233333444555566777888888888887653 46888888888888888764
Q ss_pred HHHhchhHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 348 SDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 427 (450)
Q Consensus 348 ae~lGls~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l 427 (450)
++.+|+|+.+|||+||+++++.++++++.+...|++++|.|+||+++|+++|+..+++++..++.+++..+++|++++++
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~ 322 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF 322 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999988888888888899999999999999999999999887776677777789999999999
Q ss_pred HHHhcCCChHHHHHHhccCCCC
Q 013078 428 VTKLFGYSMRTSFLVSWLPKLM 449 (450)
Q Consensus 428 ~~~~~g~~~r~a~~vGl~La~m 449 (450)
.++++|+++|+++.+|++|+|.
T Consensus 323 ~~~~~g~~~~~a~~~gl~l~~~ 344 (558)
T PRK10669 323 LVRLFGHSRRTALTIAASLAQI 344 (558)
T ss_pred HHHHhCCChhhHHHHHHHHhcc
Confidence 9999999999999999999973
No 5
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=295.68 Aligned_cols=286 Identities=29% Similarity=0.500 Sum_probs=256.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhh------HHH------------------
Q 013078 162 LQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ------------------ 217 (450)
Q Consensus 162 l~~d~~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~------l~q------------------ 217 (450)
||+|.+++..++.-+..++++|.+..|+|+|+.+||+++|++.||...+++.| +.|
T Consensus 1 m~h~tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 1 MHHDTPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHH
Confidence 57888999999999999999999999999999999999999999998888753 111
Q ss_pred ----------------------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHH
Q 013078 218 ----------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 269 (450)
Q Consensus 218 ----------------------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~ 269 (450)
+.||++...+.+|.++|.+||.+..|-++|++..+++.||+++|..+++|+.
T Consensus 81 LLavk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~ 160 (408)
T COG4651 81 LLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA 160 (408)
T ss_pred HhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 013078 270 VGLLFALLPVLGGNSGL-----LQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLS 344 (450)
Q Consensus 270 ~illlall~~L~~~~~~-----~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~ 344 (450)
.++.+.+.|++++--+. ....+.+...+.+...|+.++.+++|.+.||+++++.+ .+++|++.+.++++++..
T Consensus 161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~--tGsrElf~L~vla~ALgV 238 (408)
T COG4651 161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA--TGSRELFTLAVLAIALGV 238 (408)
T ss_pred HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHH
Confidence 99999999988753111 11234455566677889999999999999999999987 578999999999999988
Q ss_pred HH-HHHHhchhHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHH
Q 013078 345 AW-CSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTA 423 (450)
Q Consensus 345 ~~-iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l 423 (450)
++ .++.+|+|..+|||++|+++++++.+++..+..-|++|.|..+||+++||..||..+.+++..++...++.+.+|-+
T Consensus 239 a~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~ 318 (408)
T COG4651 239 AFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSV 318 (408)
T ss_pred hhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHH
Confidence 76 45788999999999999999999889999999999999999999999999999999998888888888888999999
Q ss_pred HHHHHHHhcCCChHHHHHHhccCCCC
Q 013078 424 VGTIVTKLFGYSMRTSFLVSWLPKLM 449 (450)
Q Consensus 424 ~~~l~~~~~g~~~r~a~~vGl~La~m 449 (450)
..+...+.+|+|.|+++..+.+++|.
T Consensus 319 aaf~ivr~Fg~~~~TaLtis~SLaqi 344 (408)
T COG4651 319 AAFFIVRAFGHPVRTALTISASLAQI 344 (408)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHhh
Confidence 99999999999999999999999985
No 6
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=5.5e-35 Score=327.40 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhh------------HH----H-------------
Q 013078 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------LV----Q------------- 217 (450)
Q Consensus 167 ~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~------------l~----q------------- 217 (450)
.++.+++++++++.+++++++|+|||.++|||++|+++||++++.+++ .. +
T Consensus 43 ~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 43 LFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 388999999999999999999999999999999999999999987631 11 1
Q ss_pred -------------------------Hhc--------C------chHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHH
Q 013078 218 -------------------------LCG--------A------KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQV 258 (450)
Q Consensus 218 -------------------------l~G--------~------~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~l 258 (450)
.+| . .....+++|+++|.||+|++.|+|+|+|+.+++.||+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~Grl 202 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRI 202 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHH
Confidence 011 1 1123588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc---CchhHHHH
Q 013078 259 TIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSS---QTNELYQL 335 (450)
Q Consensus 259 ilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~---~~~El~ll 335 (450)
++++++++|+++|++++++..+...+.. ... ..+.++..++++++++++.| ++++|+.++.+ ..+|.++.
T Consensus 203 aLsaavv~Dl~~~ilLav~~~l~~~~~~--~~~-~l~~~l~~~~f~~~~~~v~r----~~~~~~~r~~~~~~~~~e~~v~ 275 (832)
T PLN03159 203 AMSAALVNDMCAWILLALAIALAENDST--SLA-SLWVLLSSVAFVLFCFYVVR----PGIWWIIRRTPEGETFSEFYIC 275 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--chh-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCcCCCCcccchhH
Confidence 9999999999999999998777543321 111 11223333344444444444 44455544332 23567777
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcchhhHHHhhhcH-HHHHHHHHHHHHhhccchhhHhHH--HHHHHH
Q 013078 336 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPI-RNLFAALFLSSIGMLIHVHFLWNH--VDILLA 412 (450)
Q Consensus 336 ~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~ie~i-~~~F~plFF~sIG~~id~~~l~~~--~~~ll~ 412 (450)
.+++++++++++++.+|+|+++|||++|+++++.+.++++.++++++ .++|+|+||+++|+++|+..+... |..++.
T Consensus 276 ~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~ 355 (832)
T PLN03159 276 LILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVL 355 (832)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHH
Confidence 88888889999999999999999999999999887788899999998 589999999999999999888653 344455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhccCCC
Q 013078 413 SVILVIIVKTAVGTIVTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 413 lv~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La~ 448 (450)
++++.+++|++++++.++++|+++|+++.+|++|++
T Consensus 356 liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~ 391 (832)
T PLN03159 356 VIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNT 391 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 566778999999999999999999999999999987
No 7
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.97 E-value=2.3e-28 Score=241.10 Aligned_cols=219 Identities=36% Similarity=0.592 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhH------HH---------------------------------
Q 013078 177 VSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ--------------------------------- 217 (450)
Q Consensus 177 v~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l------~q--------------------------------- 217 (450)
+.+.+.+.+++|+|+|++++|+++|+++||++++.+++. .+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999876421 00
Q ss_pred --------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013078 218 --------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN 283 (450)
Q Consensus 218 --------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~illlall~~L~~~ 283 (450)
++|+++.+++++|++++.||++++.++++|+|..+++.|+++++++++||+.+++++++...+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~ 161 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATS 161 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457789999999999999999999999999999999999999999999999999999988776543
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 013078 284 SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAG 363 (450)
Q Consensus 284 ~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAG 363 (450)
.+. .............+..++..++.+|..+++.++..+. +++|.....++++++.++.++|.+|+|+.+|||++|
T Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aG 237 (273)
T TIGR00932 162 AST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEL--RPSELFTAGSLLLMFGSAYFADLLGLSMALGAFLAG 237 (273)
T ss_pred CCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 221 1111222222223333344566777777777776543 346777888888899999999999999999999999
Q ss_pred HHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccc
Q 013078 364 VMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIH 399 (450)
Q Consensus 364 l~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id 399 (450)
+++++.+.++++.++++++.++|.|+||+++|+++|
T Consensus 238 l~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 238 VVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999998777889999999999999999999999986
No 8
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.96 E-value=1e-26 Score=251.47 Aligned_cols=275 Identities=18% Similarity=0.199 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchh--h--HHH-------------------------
Q 013078 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS--E--LVQ------------------------- 217 (450)
Q Consensus 167 ~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~--~--l~q------------------------- 217 (450)
.+++.+.++++.+.+++.+++|+|+|.+++|+++|+++||++++.+. + ..+
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 47888999999999999999999999999999999999999988552 1 110
Q ss_pred --------------------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHH
Q 013078 218 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAV 270 (450)
Q Consensus 218 --------------------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~ 270 (450)
++|++|.+++++|+++++||++++.++++|.|. .+++.++++.+.+.+||..+
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~a 165 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMA 165 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHH
Confidence 457899999999999999999999999999984 78899999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 013078 271 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 350 (450)
Q Consensus 271 illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~ 350 (450)
++++.++..+...+.....+..+...+...+..+++.+ +..++..+++++.+. ..++.+.+.+++++++++.+++.
T Consensus 166 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~-~~g~l~~~l~~~~~~---~~~~~~~i~~l~~~l~~~~~a~~ 241 (562)
T PRK05326 166 VFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGL-LGGWLLVQLLNRIAL---PAEGLYPILVLAGALLIFALTAA 241 (562)
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccC---chhhHHHHHHHHHHHHHHHHHHH
Confidence 98887766554332211112212222222222222222 233455555555421 23566778888899999999999
Q ss_pred hchhHHHHHHHHHHHhcCCcc--hhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHH-HHHHHHHHHHHHHHHH
Q 013078 351 LGLSLELGSFMAGVMISTTDF--AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILL-ASVILVIIVKTAVGTI 427 (450)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~~--~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll-~lv~~~vv~K~l~~~l 427 (450)
+|.|+.+|+|++|+++++.+. ++++.+..+.+.+++.|+||+++|+.+|++.+.+.++..+ ..+++.+++|++++++
T Consensus 242 lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l 321 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFL 321 (562)
T ss_pred HCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998743 3456666667788999999999999999998876544333 3344667899999999
Q ss_pred HHHhcCCChHHHHHHhcc
Q 013078 428 VTKLFGYSMRTSFLVSWL 445 (450)
Q Consensus 428 ~~~~~g~~~r~a~~vGl~ 445 (450)
..+.+++++||+..+|..
T Consensus 322 ~~~~~~~~~~e~~~i~~~ 339 (562)
T PRK05326 322 SLLPFRFNLREKLFISWV 339 (562)
T ss_pred HHccCCCCHhhhheeeee
Confidence 999999999999998864
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.94 E-value=5.5e-29 Score=255.22 Aligned_cols=271 Identities=26% Similarity=0.434 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhH-H------H----------------------------
Q 013078 173 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL-V------Q---------------------------- 217 (450)
Q Consensus 173 ~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l-~------q---------------------------- 217 (450)
+++++.+.+++++++|+++|.++||+++|+++||.+++++++. . +
T Consensus 2 vlli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 2 VLLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred EEEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3456668888889999999999999999999999999865421 1 0
Q ss_pred ------------------H----hcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 013078 218 ------------------L----CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFA 275 (450)
Q Consensus 218 ------------------l----~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~illla 275 (450)
. .|+++.+++++|.+++.||++++.++++|++..+++.++++.+.++++|+.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~ 161 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLS 161 (380)
T ss_dssp --------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhh
Confidence 1 356788999999999999999999999998889999999999999999999998888
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhH
Q 013078 276 LLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSL 355 (450)
Q Consensus 276 ll~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~ 355 (450)
+.....+.+... ........+.. .+ ...++.+++.+++.+++.++..+++|.....++++++..++++|++|.|+
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~ 236 (380)
T PF00999_consen 162 ILISLAQASGQS-SLGQLLLSFLW---II-LIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILGLSG 236 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhcccccc-cccchhcchhh---hh-hhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccccccccccc
Confidence 877665222111 11111111111 11 12222335555666666654334677788889999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhHHHhhhcHH-HHHHHHHHHHHhhccchhhHh---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 356 ELGSFMAGVMISTTDFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLW---NHVDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 356 ~LGAFlAGl~ls~~~~~~~l~~~ie~i~-~~F~plFF~sIG~~id~~~l~---~~~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
.+|+|++|+++++.+.++++.+++++++ ++|.|+||+++|+++|++.+. ..+...+.+++..+++|++++++..+.
T Consensus 237 ~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 316 (380)
T PF00999_consen 237 ILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRL 316 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhh
Confidence 9999999999998888888999999998 899999999999999998883 455666666677779999999999999
Q ss_pred cCCChHHHHHHhccCCC
Q 013078 432 FGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 432 ~g~~~r~a~~vGl~La~ 448 (450)
.|+++|++..+|+.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~ 333 (380)
T PF00999_consen 317 FGIPWKEALFIGLGMLP 333 (380)
T ss_dssp ------HHHHTTTTSS-
T ss_pred cccccchhHHHHHhhcC
Confidence 99999999999998874
No 10
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.2e-24 Score=237.40 Aligned_cols=275 Identities=21% Similarity=0.294 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhHH------------H-----------------
Q 013078 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELV------------Q----------------- 217 (450)
Q Consensus 167 ~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l~------------q----------------- 217 (450)
.++.++.++++++.++..+++++|||.++.++++|+++||+.++.+.... +
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~ 102 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLE 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999887663210 0
Q ss_pred -------------------------HhcC-------------------chHHHHHHHHHhhhccHHHHHHHHHhcccCCc
Q 013078 218 -------------------------LCGA-------------------KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNA 253 (450)
Q Consensus 218 -------------------------l~G~-------------------~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s 253 (450)
..|. ...+-.++....+.||.|++.++|.|+|+.++
T Consensus 103 ~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~s 182 (769)
T KOG1650|consen 103 IDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNS 182 (769)
T ss_pred hhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhc
Confidence 0010 11256788899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---ch
Q 013078 254 LHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQ---TN 330 (450)
Q Consensus 254 ~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~---~~ 330 (450)
+.|++++++++++|+.+|.++++..++.+..... +..+ .+.+...+++.+++. +..++.++|+.+++++ .+
T Consensus 183 e~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~l~~~----~v~~p~~~wi~kr~pe~~~~~ 256 (769)
T KOG1650|consen 183 ELGRLALSAAVVNDVAGWILLALALAFSSELKLS-PLRS-VWDLVLVIGFVLFLF----FVVRPLMKWIIKRTPEGKPVS 256 (769)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc-chHH-HHHHHHHHHHHHhee----eehhhhHHHHhhcCCCCCccc
Confidence 9999999999999999999888888776654311 1111 122233333333333 4556778888877653 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHhcCC-cchhhHHHhhhcHH-HHHHHHHHHHHhhccchhhHhHHH
Q 013078 331 ELYQLAAVAFCLLSAWCSDKLG-LSLELGSFMAGVMISTT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHV 407 (450)
Q Consensus 331 El~ll~~lal~ll~~~iae~lG-ls~~LGAFlAGl~ls~~-~~~~~l~~~ie~i~-~~F~plFF~sIG~~id~~~l~~~~ 407 (450)
+.+....+...+..+..++.++ +|+.+|+|+.|+++++. |.+..+.+++|.+. ++|.|+||+..|++.|...+.. |
T Consensus 257 ~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~ 335 (769)
T KOG1650|consen 257 DAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK-W 335 (769)
T ss_pred cceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH-H
Confidence 5677777888888889999988 89999999999999987 55888999999885 8999999999999999998877 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhccCCC
Q 013078 408 DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 408 ~~ll~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La~ 448 (450)
......+....++|++++..++.++|+|+||++.+|+.|++
T Consensus 336 ~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~ 376 (769)
T KOG1650|consen 336 GALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMST 376 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHh
Confidence 66677777888999999999999999999999999999874
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.80 E-value=3e-17 Score=176.59 Aligned_cols=222 Identities=15% Similarity=0.174 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccc-h---hhHH-------------------H------------
Q 013078 173 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKF-I---SELV-------------------Q------------ 217 (450)
Q Consensus 173 ~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~-I---~~l~-------------------q------------ 217 (450)
..+++.+.....+++|+++|.+++++++|+++||..+.. + +++. +
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la 83 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIA 83 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344556667778899999999999999999999764321 1 1110 0
Q ss_pred -----------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 218 -----------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVL 280 (450)
Q Consensus 218 -----------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~illlall~~L 280 (450)
+.|+++..++++|+++++|+++++.+++++.+ .+++..+++.|.+++||..+++++.+...+
T Consensus 84 ~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~~~ 162 (525)
T TIGR00831 84 FLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAVAV 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 34788999999999999999999999999975 467788999999999999999999887766
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 013078 281 GGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSF 360 (450)
Q Consensus 281 ~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAF 360 (450)
..+++..+........+...++.+++.++++ |+..++.++. .+.+......++++++..++++|.+|.|+.+++|
T Consensus 163 ~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g-~~~~~l~~~~----~~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv 237 (525)
T TIGR00831 163 ALGKGVFDPLNAALDFAVVCVGGIAAGLAVG-YLAYRLLRAK----IDDPLVEIALTILAPFAGFLLAERFHFSGVIAVV 237 (525)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5432211111111111111122233333444 3444444332 1233445667788888999999999999999999
Q ss_pred HHHHHhcCCcch----hhHHHhhhcH----HHHHHHHHHHHHhhccch
Q 013078 361 MAGVMISTTDFA----KHTLDQVEPI----RNLFAALFLSSIGMLIHV 400 (450)
Q Consensus 361 lAGl~ls~~~~~----~~l~~~ie~i----~~~F~plFF~sIG~~id~ 400 (450)
++|+++++.... .+...+.+.+ ..++.+++|+.+|+++..
T Consensus 238 ~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~ 285 (525)
T TIGR00831 238 AAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG 285 (525)
T ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999975321 2223334344 458889999999999864
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.79 E-value=5e-17 Score=178.80 Aligned_cols=269 Identities=14% Similarity=0.113 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhh------------HHH-------------------------
Q 013078 175 VIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------LVQ------------------------- 217 (450)
Q Consensus 175 ilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~------------l~q------------------------- 217 (450)
+++++.+..++-+|+.+|..+-|+++|+++||.++++++. +.+
T Consensus 22 lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrs 101 (810)
T TIGR00844 22 SSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVS 101 (810)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHH
Confidence 3445555555556999999999999999999998876541 111
Q ss_pred ----------------------H-hcCchHHHHHHHHHhhhccHHHHHHHHHhc--ccCCcchhHHHHHHHHHHHHHHHH
Q 013078 218 ----------------------L-CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ--NSNNALHGQVTIGTLILQDCAVGL 272 (450)
Q Consensus 218 ----------------------l-~G~~~~~al~iG~~Ls~TStaVV~~iL~e~--~~~~s~~g~lilg~avl~Dv~~il 272 (450)
+ .|++|..++++|+++++|.|+.+..+++.. ..+..+...++-+.+.+||-++++
T Consensus 102 V~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlAfp 181 (810)
T TIGR00844 102 VTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFP 181 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhhhhcccHHHHH
Confidence 2 478999999999999999999888888742 124567778888999999999987
Q ss_pred HHHHHHHHhc--C-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 013078 273 LFALLPVLGG--N-SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSD 349 (450)
Q Consensus 273 llall~~L~~--~-~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae 349 (450)
++.+...+.. . ++.....|.+...+..+++.+++.++++ |+..++.+|+.++..-.+|.++...++++++++.+++
T Consensus 182 fv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG-~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~ 260 (810)
T TIGR00844 182 FVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIG-YCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGS 260 (810)
T ss_pred HHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 6654433332 1 1111111112223333333444555666 5777778877654433556666677778888888999
Q ss_pred HhchhHHHHHHHHHHHhcCCcc-hhhH-HHhhhc-HHHHHHHHHHHHHhhccchhhHhH------HHHHHHHHHHHHHHH
Q 013078 350 KLGLSLELGSFMAGVMISTTDF-AKHT-LDQVEP-IRNLFAALFLSSIGMLIHVHFLWN------HVDILLASVILVIIV 420 (450)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~-~~~l-~~~ie~-i~~~F~plFF~sIG~~id~~~l~~------~~~~ll~lv~~~vv~ 420 (450)
.+|.|+.+++|+||+++++... .++. ...+.. +..++...+|+.+|+.+.+..+.. .|..++..++++++.
T Consensus 261 lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVr 340 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLR 340 (810)
T ss_pred HhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997532 1111 111222 234788899999999998876643 244455556667788
Q ss_pred HHHHHHHHHHhc--CCChHHHHHHhc
Q 013078 421 KTAVGTIVTKLF--GYSMRTSFLVSW 444 (450)
Q Consensus 421 K~l~~~l~~~~~--g~~~r~a~~vGl 444 (450)
|..++++..... ..++||++++|.
T Consensus 341 RPpaVlll~~li~~~~s~rErlFigW 366 (810)
T TIGR00844 341 RIPAVLILKPLIPDIKSWREAMFIGH 366 (810)
T ss_pred HHHHHHHHhhhcccCCCHHHHHHhee
Confidence 988887764443 368999998874
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.3e-15 Score=156.26 Aligned_cols=276 Identities=18% Similarity=0.214 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhh-------HH-------------------H---
Q 013078 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE-------LV-------------------Q--- 217 (450)
Q Consensus 167 ~li~~l~iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~-------l~-------------------q--- 217 (450)
..+....+++..+...+.+.+|+..|.+..+++.|++.||.+++.+.. +. +
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~ 85 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRR 85 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence 356778888888999999999999999999999999999988776541 10 0
Q ss_pred -------------------------Hh--cCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHH
Q 013078 218 -------------------------LC--GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV 270 (450)
Q Consensus 218 -------------------------l~--G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~ 270 (450)
++ ++++..++.+|+++++|+|.++.+++++.+ ...+..+++.|.+++||..+
T Consensus 86 ~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~g 164 (429)
T COG0025 86 VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVG 164 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHH
Confidence 23 678889999999999999999999998864 67888999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 013078 271 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 350 (450)
Q Consensus 271 illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~ 350 (450)
++++.+........+..+..+.....+....+.+++..+++ ++..++.+++.++...+.......+++..+..+.++|.
T Consensus 165 iv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~ 243 (429)
T COG0025 165 IVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEA 243 (429)
T ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99988777665432221111222223333333344445555 56667788887654334556677888889999999999
Q ss_pred hchhHHHHHHHHHHHhcCCc----chhhHHHhhhcH----HHHHHHHHHHHHhhccchhhHhHH-HHHHHHHHHHHHHHH
Q 013078 351 LGLSLELGSFMAGVMISTTD----FAKHTLDQVEPI----RNLFAALFLSSIGMLIHVHFLWNH-VDILLASVILVIIVK 421 (450)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~----~~~~l~~~ie~i----~~~F~plFF~sIG~~id~~~l~~~-~~~ll~lv~~~vv~K 421 (450)
+|.|+.++..++|++.++.. ...+...+.+.+ ..++..+.|+.+|++++....... +..++..+..+++.|
T Consensus 244 l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R 323 (429)
T COG0025 244 LGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLAR 323 (429)
T ss_pred hCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999885211 111223333334 347888999999999999887765 566777778889999
Q ss_pred HHHHHHHHHhcC------CChHHHHHHhc
Q 013078 422 TAVGTIVTKLFG------YSMRTSFLVSW 444 (450)
Q Consensus 422 ~l~~~l~~~~~g------~~~r~a~~vGl 444 (450)
++.++...+... .++|++.+++.
T Consensus 324 ~~~V~~~~~~~~~~~~~~~~~~~~~~l~w 352 (429)
T COG0025 324 PLWVFLSLKGSNLKLRDPLPWRERLFLSW 352 (429)
T ss_pred HHHHHHHHhhccccccCCCCHHHHHHHhh
Confidence 999999988743 68899876653
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.61 E-value=2.4e-13 Score=147.29 Aligned_cols=218 Identities=14% Similarity=0.203 Sum_probs=143.0
Q ss_pred cCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHH---
Q 013078 220 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKL--- 296 (450)
Q Consensus 220 G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~--- 296 (450)
++++.+++++|+++++|+|+.+..++++.+ .+.+.-.++.|.+.+||..+++++.++..+...++....+.++...
T Consensus 128 ~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (559)
T TIGR00840 128 DIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCAS 206 (559)
T ss_pred CCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 348999999999999999999999999986 5778889999999999999999998777665321110011111111
Q ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCC---cch
Q 013078 297 -LLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---DFA 372 (450)
Q Consensus 297 -ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~---~~~ 372 (450)
+...++.+++.++++ ++...+.++... .+......+++++++.+.++|.+|.|+.++++++|+++++. ...
T Consensus 207 f~~~~~GGiliG~v~G-~l~~~l~r~~~~----~~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s 281 (559)
T TIGR00840 207 FFVVTCGGLLVGVVFG-FLVAFITRFTHH----IRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMS 281 (559)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCC
Confidence 111112223333444 344444554432 23445566777888888999999999999999999999753 122
Q ss_pred hhHHH----hhhcHHHHHHHHHHHHHhhccchh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHH
Q 013078 373 KHTLD----QVEPIRNLFAALFLSSIGMLIHVH-FLWNHVDILLASVILVIIVKTAVGTIVTKL------FGYSMRTSFL 441 (450)
Q Consensus 373 ~~l~~----~ie~i~~~F~plFF~sIG~~id~~-~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~------~g~~~r~a~~ 441 (450)
++..+ -.+.+..+...+.|+.+|+.+... ..+ .|..++..+++.++.|++.++...+. .++++||.+.
T Consensus 282 ~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~i 360 (559)
T TIGR00840 282 RRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLV 360 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhh
Confidence 22222 233334577789999999976322 222 24444444456678899888766543 3468888776
Q ss_pred Hhc
Q 013078 442 VSW 444 (450)
Q Consensus 442 vGl 444 (450)
++.
T Consensus 361 l~w 363 (559)
T TIGR00840 361 IFY 363 (559)
T ss_pred eee
Confidence 653
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.9e-13 Score=140.29 Aligned_cols=263 Identities=20% Similarity=0.238 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCccchh----hHHH--------------------------------
Q 013078 174 VVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS----ELVQ-------------------------------- 217 (450)
Q Consensus 174 iilv~a~i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~----~l~q-------------------------------- 217 (450)
+++.++.+...+..|+|.|..+-++..|++.|-.|++-|+ ++.+
T Consensus 14 vlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~pals 93 (574)
T COG3263 14 VLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALS 93 (574)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHH
Confidence 5667777888889999999999999999999999988664 1110
Q ss_pred -------------------HhcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHH-HHHHHH
Q 013078 218 -------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG-LLFALL 277 (450)
Q Consensus 218 -------------------l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~i-lllall 277 (450)
+++++|.+++++|++...|..+.|..+|.+.++ +.+.+.+.--.+--||-+++ +.++++
T Consensus 94 LATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl-~erv~stLEiESGtNDPmAvfLTitli 172 (574)
T COG3263 94 LATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNL-NERVASTLEIESGSNDPMAVFLTITLI 172 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCCh-hhhhhhhEEeecCCCCceeeehhHHHH
Confidence 567899999999999999999999999988764 55566655555567887765 445566
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHH
Q 013078 278 PVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLEL 357 (450)
Q Consensus 278 ~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~L 357 (450)
..++++.+.. .+ .+...++.-. .+..+++ +...++..++.++..-.+.++.+.+++..++.+.+++.+|-|+.+
T Consensus 173 eli~~get~l-~~-~~ll~f~~q~---glG~l~G-~~gg~l~~~~Inr~nLd~GL~pil~la~~Ll~fs~t~aiGGsG~L 246 (574)
T COG3263 173 ELIAGGETNL-SW-GFLLGFLQQF---GLGLLLG-LGGGKLLLQLINRINLDSGLYPILALAGGLLIFSLTGAIGGSGIL 246 (574)
T ss_pred HHHhcccccc-CH-HHHHHHHHHh---hHHHHHH-HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcCcccH
Confidence 6555542321 11 1111111111 1112222 233333334333322246678889999999999999999999999
Q ss_pred HHHHHHHHhcCCcc--hhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013078 358 GSFMAGVMISTTDF--AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHV-DILLASVILVIIVKTAVGTIVTKLFGY 434 (450)
Q Consensus 358 GAFlAGl~ls~~~~--~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~-~~ll~lv~~~vv~K~l~~~l~~~~~g~ 434 (450)
..+++|+.+.+.+. ++.+.+..+.+..+-..+.|...|+.++|+.++... ..++..+.+..++|.+++++...-+++
T Consensus 247 aVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfrf 326 (574)
T COG3263 247 AVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFRF 326 (574)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhccccc
Confidence 99999999999864 566778888888999999999999999999998753 345566677889999999999999999
Q ss_pred ChHHHHHHh
Q 013078 435 SMRTSFLVS 443 (450)
Q Consensus 435 ~~r~a~~vG 443 (450)
++||..+++
T Consensus 327 ~~~Ek~fvS 335 (574)
T COG3263 327 NRREKLFVS 335 (574)
T ss_pred Cccchheee
Confidence 999987654
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.11 E-value=6.4e-09 Score=108.69 Aligned_cols=186 Identities=16% Similarity=0.164 Sum_probs=122.9
Q ss_pred HhhhccHHHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 013078 232 FLSMSSTAVVVKFLVEQNSN-NALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSIL 310 (450)
Q Consensus 232 ~Ls~TStaVV~~iL~e~~~~-~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv 310 (450)
+-.+|+++...+++...|.. .+.....+++.+++||+.+++++|+.. ++ +. .+..+ ....+ .+++.++
T Consensus 131 Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~-~i--~~~~L---~~a~~-~~~~l~~- 199 (423)
T PRK14853 131 IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TS-EL--NLEAL---LLALV-PLALFWL- 199 (423)
T ss_pred hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CC-CC--CHHHH---HHHHH-HHHHHHH-
Confidence 34689999999999997754 778888999999999999999888765 22 21 12211 11111 1111111
Q ss_pred HhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCc------------chhhHHHh
Q 013078 311 SWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD------------FAKHTLDQ 378 (450)
Q Consensus 311 ~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~------------~~~~l~~~ 378 (450)
+++ + +.++.+....+ .+.+.+..+..|+|+.+|+|++|++++..+ ..++++|+
T Consensus 200 --------l~~---~--~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~ 264 (423)
T PRK14853 200 --------LVQ---K--RVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHR 264 (423)
T ss_pred --------HHH---c--CCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHH
Confidence 111 1 12333333333 234455889999999999999999998521 13678889
Q ss_pred hhcHH-HHHHHHH-HHHHhhccch-hhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHh----------cCCChHHHHHHh
Q 013078 379 VEPIR-NLFAALF-LSSIGMLIHV-HFLWNHVD--ILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVS 443 (450)
Q Consensus 379 ie~i~-~~F~plF-F~sIG~~id~-~~l~~~~~--~ll~lv~~~vv~K~l~~~l~~~~----------~g~~~r~a~~vG 443 (450)
++|+. .++.|+| |+..|.++|. ..+.+.+. ..+.+++..+++|.++++...+. -+.+|++=..+|
T Consensus 265 L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~ 344 (423)
T PRK14853 265 LRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVA 344 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence 99986 6889999 9999999986 43423322 55667777889999987776554 245666654444
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.11 E-value=9.1e-09 Score=109.88 Aligned_cols=260 Identities=17% Similarity=0.166 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHhhCc------CCccch-------h-hH---------------
Q 013078 168 LISDLVVVIVSAAIGGIIFSCLG---QPVIVGYLLAGSIIGP------GGLKFI-------S-EL--------------- 215 (450)
Q Consensus 168 li~~l~iilv~a~i~g~l~~rlg---lP~ivGyIlaGilLGP------sgL~~I-------~-~l--------------- 215 (450)
-++-.+.+++.+.+.++++++-| +|--+.-++.|+++|- .+.+.. + +.
T Consensus 36 al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy 115 (575)
T KOG1965|consen 36 ALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGY 115 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccc
Confidence 45566677788889999999877 8988888888888872 222110 0 00
Q ss_pred ----HH----------------------------H-------hcCchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchh
Q 013078 216 ----VQ----------------------------L-------CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHG 256 (450)
Q Consensus 216 ----~q----------------------------l-------~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g 256 (450)
.| + .++++.+++.+|+++|+|+|..++.+++|.+ .+...-
T Consensus 116 ~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd~~Ly 194 (575)
T KOG1965|consen 116 SLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VDPKLY 194 (575)
T ss_pred eechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CCccee
Confidence 00 1 2467899999999999999999999999996 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHH
Q 013078 257 QVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLS-IYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQL 335 (450)
Q Consensus 257 ~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~-~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll 335 (450)
.++.|.+++||..+++++..+......+.......+....++... +-..+....+ ++.--++|.+.-+.....|. .
T Consensus 195 ~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~G-lisA~~lK~~~l~~~~~lE~--a 271 (575)
T KOG1965|consen 195 TLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIG-LISALVLKFLYLRRTPSLES--A 271 (575)
T ss_pred eeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHHH--H
Confidence 788999999999999999988876654332111111222222111 1111111122 22223344443332334554 4
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCc------chhhHHHh-hhcHHHHHHHHHHHHHhhcc-chhhHhHH-
Q 013078 336 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD------FAKHTLDQ-VEPIRNLFAALFLSSIGMLI-HVHFLWNH- 406 (450)
Q Consensus 336 ~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~------~~~~l~~~-ie~i~~~F~plFF~sIG~~i-d~~~l~~~- 406 (450)
+.+.+....+..+|..|+|+++..+.+|+..++.- .++...++ ++.+.-+-.-+-|+++|+.+ +.......
T Consensus 272 l~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~ 351 (575)
T KOG1965|consen 272 LMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKS 351 (575)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeec
Confidence 44556667888999999999999999999998741 22222222 22233333455599999633 33332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 407 VDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 407 ~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
...+.....++.++|..-++-...+
T Consensus 352 ~~fv~~~~vlV~lgRa~nvfPLs~L 376 (575)
T KOG1965|consen 352 LQFVFGAGVLVLLGRAANVFPLSFL 376 (575)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHH
Confidence 2334444555667776665554444
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.00 E-value=7e-09 Score=103.98 Aligned_cols=222 Identities=14% Similarity=0.132 Sum_probs=142.5
Q ss_pred cCchHHHHHHHHHhhhccHHHHHHHHHhccc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHH
Q 013078 220 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS---NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGL---LQGMVSM 293 (450)
Q Consensus 220 G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~---~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~---~~~~~sl 293 (450)
+++...++.+++|+++|.|.....+..+.+. ...+.-.++.+.+-.||-.+++++-+..-+-..... .-+|. .
T Consensus 127 ~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv-~ 205 (467)
T KOG4505|consen 127 NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV-C 205 (467)
T ss_pred cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCcee-h
Confidence 4577899999999999999888887776543 333344567788899999998777665544322111 01221 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCc-ch
Q 013078 294 GKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-FA 372 (450)
Q Consensus 294 ~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~-~~ 372 (450)
.-++......+++..+++ |+.+..+|+..++.--.+|.++..-+++.+.+..+.+.+|++..+-.|.||.+++=.+ +.
T Consensus 206 ~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFs 284 (467)
T KOG4505|consen 206 DNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFS 284 (467)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhh
Confidence 122222221222233444 5666667776654444688888888888999999999999999999999999998542 23
Q ss_pred hhHH-HhhhcHHH-HHHHHHHHHHhhccchhhHhHH------HHHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHH
Q 013078 373 KHTL-DQVEPIRN-LFAALFLSSIGMLIHVHFLWNH------VDILLASVILVIIVKTAVGTIVTKLF-G-YSMRTSFLV 442 (450)
Q Consensus 373 ~~l~-~~ie~i~~-~F~plFF~sIG~~id~~~l~~~------~~~ll~lv~~~vv~K~l~~~l~~~~~-g-~~~r~a~~v 442 (450)
+++. .++..+.| .+.-.||.+.|..++++.+... |..++..+...+.-|.-++++.-.+. . .+||||+++
T Consensus 285 k~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFv 364 (467)
T KOG4505|consen 285 KKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFV 364 (467)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHh
Confidence 3333 34555665 7778899999999998876432 33333333333333444343333222 2 378999988
Q ss_pred h
Q 013078 443 S 443 (450)
Q Consensus 443 G 443 (450)
|
T Consensus 365 G 365 (467)
T KOG4505|consen 365 G 365 (467)
T ss_pred c
Confidence 7
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.49 E-value=2.8e-06 Score=87.71 Aligned_cols=171 Identities=18% Similarity=0.161 Sum_probs=102.0
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
.|+++-...++.=.|. .....-...+..+++||+.+++++|+.- ++ +. .+. ....... .+++.+
T Consensus 124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~-~i--~~~---~L~~a~~-~~~~l~----- 188 (373)
T TIGR00773 124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---TN-DL--SMA---ALLVAAV-AIAVLA----- 188 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---CC-CC--CHH---HHHHHHH-HHHHHH-----
Confidence 4555555555544442 2333445678999999999998887644 22 21 111 1111111 111111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcc-----hhhHHHhhhcHH-HHHH
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF-----AKHTLDQVEPIR-NLFA 387 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~-----~~~l~~~ie~i~-~~F~ 387 (450)
+++|. +.++......+.++ +- +.....|+|+.+|+|++|++++..+. .++++|.+.|.. .+++
T Consensus 189 ----~~~~~-----~v~~~~~y~~lgvl-lW-~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 189 ----VLNRC-----GVRRLGPYMLVGVI-LW-FAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred ----HHHHc-----CCchhhHHHHHHHH-HH-HHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 12221 23333333233222 22 22279999999999999999997521 355667777776 4678
Q ss_pred HHH-HHHHhhccchhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 388 ALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 388 plF-F~sIG~~id~~~l~~~-~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
|+| |+..|.++|...+... ....+.+++..+++|.++++...+.
T Consensus 258 PlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l 303 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWI 303 (373)
T ss_pred HHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999976543221 2345666677889999998887664
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.16 E-value=0.008 Score=63.52 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=103.9
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
.|+++-...++.=.|. ..+..-..++..+++||+.+++++|+.- ++ +. .+. ..+...+. +++.+
T Consensus 139 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~i--~~~---~L~~a~~~-~~~l~----- 203 (438)
T PRK14856 139 ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---TT-NL--KFA---WLLGALGV-VLVLA----- 203 (438)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CC-CC--cHH---HHHHHHHH-HHHHH-----
Confidence 5666666666655443 2333445678999999999998887654 22 21 111 12212111 11111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHhcCCcc---------------------
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDF--------------------- 371 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~ia-e~lGls~~LGAFlAGl~ls~~~~--------------------- 371 (450)
++++.. .+.......+++ ..|.+ ..-|+|+.++..+.|+++|..+.
T Consensus 204 ----~ln~~~-----v~~~~~Y~~~G~---~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 204 ----VLNRLN-----VRSLIPYLLLGV---LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred ----HHHHcC-----CccccHHHHHHH---HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 122221 222222222222 23433 56799999999999999986421
Q ss_pred ------------------------hhhHHHhhhcHHH-HHHHHH-HHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 013078 372 ------------------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVG 425 (450)
Q Consensus 372 ------------------------~~~l~~~ie~i~~-~F~plF-F~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~ 425 (450)
.++++|.+.|... +.+|+| |+-.|..++...........+.+.+..+++|.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 1234555666655 777999 89999999755322223355666677789998888
Q ss_pred HHHHHh----------cCCChHHHHHHh
Q 013078 426 TIVTKL----------FGYSMRTSFLVS 443 (450)
Q Consensus 426 ~l~~~~----------~g~~~r~a~~vG 443 (450)
+...+. -|.+|++=..+|
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~ 379 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAG 379 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 776654 245666654443
No 21
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00041 Score=74.93 Aligned_cols=203 Identities=16% Similarity=0.197 Sum_probs=119.0
Q ss_pred Hhc--CchHHHHHHHHHhhhccHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cch-----h
Q 013078 218 LCG--AKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNS--GLL-----Q 288 (450)
Q Consensus 218 l~G--~~~~~al~iG~~Ls~TStaVV~~iL~e~~~~~s~~g~lilg~avl~Dv~~illlall~~L~~~~--~~~-----~ 288 (450)
++| .+..+-+++|+.+|+..|..|..+.+|.+- |.-.==++.|.+.+||.+.+++.-....+..-+ ... .
T Consensus 156 lf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~ 234 (670)
T KOG1966|consen 156 LFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVL 234 (670)
T ss_pred hcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeec
Confidence 445 457889999999999999999999999863 333233467999999999988877665554321 110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcC
Q 013078 289 GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMIST 368 (450)
Q Consensus 289 ~~~sl~~~ll~l~~fl~v~~lv~~~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~ 368 (450)
+..++.-+.+ +.+++.++.+ ++..-..|+. +..+-+..+.++....+++..+|.+++|++++--++|+..+.
T Consensus 235 G~~sFfVVsl---GG~lvGivfa-fl~sl~tkft----~~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~ 306 (670)
T KOG1966|consen 235 GVVSFFVVSL---GGALVGIVFA-FLASLVTKFT----KHVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKK 306 (670)
T ss_pred ceeEEEEEec---CchhHHHHHH-HHHHHHHHhh----cceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000 0011111111 1111112222 223434456667777889999999999999999999999975
Q ss_pred Cc---chhhHHHhhh----cHHHHHHHHHHHHHhhccchhhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 013078 369 TD---FAKHTLDQVE----PIRNLFAALFLSSIGMLIHVHFLWNHVD--ILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 369 ~~---~~~~l~~~ie----~i~~~F~plFF~sIG~~id~~~l~~~~~--~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
.- ..++....+. .....-.++-|...|...-=. +++|. .+.+-++.-++.|++++....++
T Consensus 307 Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~ 376 (670)
T KOG1966|consen 307 YVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRAIGVVVLTWF 376 (670)
T ss_pred HHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 31 1222222222 223455566677788755332 34443 33344445567888887776665
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=97.07 E-value=0.013 Score=61.06 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=99.4
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
.|+++-...++.=.|. .....-..++..+++||+.+++++|+.- ++ +. .+. ........ +++.++
T Consensus 131 ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t~-~i--~~~---~L~~a~~~-~~~l~~---- 196 (389)
T PRK09560 131 ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---TS-DL--SLP---ALALAAIA-IAVLFL---- 196 (389)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CC-CC--CHH---HHHHHHHH-HHHHHH----
Confidence 5666666666654442 2333345678999999999998887654 22 21 111 11211111 111111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHhcCCcc-------hhhHHHhhhcHHHH
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDF-------AKHTLDQVEPIRNL 385 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~ia-e~lGls~~LGAFlAGl~ls~~~~-------~~~l~~~ie~i~~~ 385 (450)
+++. +.+.......+.+ ..|.+ ..-|+|+.++..+.|+++|..+. .++++|.+.|..++
T Consensus 197 -----ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~ 263 (389)
T PRK09560 197 -----LNRL-----GVTKLTPYLIVGA---ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAF 263 (389)
T ss_pred -----HHHc-----CCccchHHHHHHH---HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhh
Confidence 1221 1222222222322 23443 46799999999999999987421 25678888888765
Q ss_pred H-HHHH-HHHHhhccchhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 386 F-AALF-LSSIGMLIHVHFLWN-HVDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 386 F-~plF-F~sIG~~id~~~l~~-~~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
+ +|+| |+-.|..++-..+.. .....+.+.+..+++|.++++...+.
T Consensus 264 ~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l 312 (389)
T PRK09560 264 AILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWL 312 (389)
T ss_pred hhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHH
Confidence 5 8999 888998884322322 12245566667789998888776664
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=96.86 E-value=0.025 Score=58.93 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=98.0
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
+|+++-...++.=.|. .....-...+..+++||+.+++++|+.- ++ +. .+. ........ +.+.+
T Consensus 131 ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~i--~~~---~L~~a~~~-~~~l~----- 195 (388)
T PRK09561 131 ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---TS-DL--SMV---SLGVAAVA-IAVLA----- 195 (388)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CC-Cc--cHH---HHHHHHHH-HHHHH-----
Confidence 4666666666544442 2333345678999999999998887654 22 21 111 11111111 11111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHhcCCc-----chhhHHHhhhcHHHH-H
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWC-SDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIRNL-F 386 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~i-ae~lGls~~LGAFlAGl~ls~~~-----~~~~l~~~ie~i~~~-F 386 (450)
++++. +.+.......+.+ ..|. ...-|+|+.++..+.|+++|..+ ..++++|.+.|..++ .
T Consensus 196 ----~ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~I 263 (388)
T PRK09561 196 ----VLNLC-----GVRRTSVYILVGV---VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLI 263 (388)
T ss_pred ----HHHHc-----CCccchHHHHHHH---HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhee
Confidence 11221 1222222222322 2243 35679999999999999998742 135688888888764 7
Q ss_pred HHHH-HHHHhhccchhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 387 AALF-LSSIGMLIHVHFLWN-HVDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 387 ~plF-F~sIG~~id~~~l~~-~~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
+|+| |+-.|..++-..+.. .....+.+.+..+++|.++++...+.
T Consensus 264 lPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l 310 (388)
T PRK09561 264 LPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWL 310 (388)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHH
Confidence 7888 888888883222221 12244566667788998887776654
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.73 E-value=0.041 Score=57.29 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=102.1
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
.|+++-...++.=.|. .....--..++.+++||+.+++++|+.- ++ +. .+.. ...... .+.+.+
T Consensus 127 ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~-~i--~~~~---L~~A~~-~~~~l~----- 191 (383)
T PRK14854 127 ATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TK-SL--SLLS---LSLGTL-FILAMI----- 191 (383)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CC-Cc--cHHH---HHHHHH-HHHHHH-----
Confidence 4555655555554442 2333334567889999999998877644 22 21 1111 111111 011111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCc-----chhhHHHhhhcHHH-HHH
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIRN-LFA 387 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~-----~~~~l~~~ie~i~~-~F~ 387 (450)
.++|.. +.+.......+.+ ..-+....-|+|+.++..+.|+++|..+ ..++++|.+.|... +.+
T Consensus 192 ----~~nr~~----~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~Il 261 (383)
T PRK14854 192 ----ICNRIF----KINRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFIL 261 (383)
T ss_pred ----HHHHhc----CCceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhH
Confidence 112211 1122222222222 1222345679999999999999999742 13567888888864 677
Q ss_pred HHH-HHHHhhccchhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCChHHHHHHh
Q 013078 388 ALF-LSSIGMLIHVHFLWN-HVDILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVS 443 (450)
Q Consensus 388 plF-F~sIG~~id~~~l~~-~~~~ll~lv~~~vv~K~l~~~l~~~~----------~g~~~r~a~~vG 443 (450)
|+| |+-.|..++-..+.. .....+.+.+..+++|.++++...+. .|.+|++-..+|
T Consensus 262 PlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~ 329 (383)
T PRK14854 262 PVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGIS 329 (383)
T ss_pred HHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 998 888898884322222 12344566667788998887776654 234666655444
No 25
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.70 E-value=0.02 Score=63.60 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHH
Q 013078 336 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 414 (450)
Q Consensus 336 ~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~~-~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv 414 (450)
..++.+.+...++..+|++.++|=.++|+++.....+- +-.+.++.+.++-..++.+.+|+++|++.+|.....++..-
T Consensus 12 ~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g 91 (621)
T PRK03562 12 IYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGG 91 (621)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 34445556778889999999999999999997542210 11245677788999999999999999999988655444333
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHhccCC
Q 013078 415 ILVIIVKTAVGTIVTKLFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 415 ~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La 447 (450)
..-++.=++..+.....+|+++..++.+|..++
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la 124 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLA 124 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333333344445566778999999999988764
No 26
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=96.49 E-value=0.0099 Score=61.80 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=89.7
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
.|+++....++.=.+. .....-..+++.+++||+.+++++|+.-. + +. +........+ .+++.+
T Consensus 127 ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~-~i-----~~~~L~~a~~-~~~~l~----- 191 (378)
T PF06965_consen 127 ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D-GI-----SLLWLLLAAA-ALLLLF----- 191 (378)
T ss_dssp ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHH-HHHHHH-----
T ss_pred cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C-CC-----CHHHHHHHHH-HHHHHH-----
Confidence 5777777777655543 23334466889999999999988887542 1 11 1111111111 111111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHhcCCcch---------hhHHHhhhcHH
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDFA---------KHTLDQVEPIR 383 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~ia-e~lGls~~LGAFlAGl~ls~~~~~---------~~l~~~ie~i~ 383 (450)
.++|.. .++...|. .+.+ ..|.+ ..-|+|+.++..+.|+++|..+.. ++++|.++|..
T Consensus 192 ----~l~r~~---v~~~~~Y~--~~G~---~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 192 ----VLNRLG---VRSLWPYL--LLGI---LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp ----HHHHTT------THHHH--HHHH---HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred ----HHHHCC---CceehHHH--HHHH---HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 122211 11122232 2222 23544 467999999999999999976432 46778888886
Q ss_pred H-HHHHHH-HHHHhhccchhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 384 N-LFAALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 384 ~-~F~plF-F~sIG~~id~~~l~~~-~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
+ +.+|+| |+-.|..++-..+... ....+.+++..+++|.++++...+.
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~l 310 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWL 310 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTT
T ss_pred hhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHH
Confidence 6 557999 8999998886654322 2233455556778999887776554
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=96.39 E-value=0.051 Score=57.36 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=101.5
Q ss_pred hccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013078 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (450)
Q Consensus 235 ~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~ 313 (450)
+|+++-...++.=.|. .....-..+++.+++||+.+++++|+.- ++ +. .+. ......+. +++.+
T Consensus 134 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~i--~~~---~L~~a~~~-~~~l~----- 198 (423)
T PRK14855 134 ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TS-GL--NLL---ALLLAALT-WALAL----- 198 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CC-CC--CHH---HHHHHHHH-HHHHH-----
Confidence 5666666666665543 2223445678999999999998877644 22 21 111 11111111 11111
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHhcCC-c-c-------------------
Q 013078 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTT-D-F------------------- 371 (450)
Q Consensus 314 l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~ia-e~lGls~~LGAFlAGl~ls~~-~-~------------------- 371 (450)
++++. +.+.......+.+ ..|.+ ..-|+|+.++..+.|+++|.. + .
T Consensus 199 ----~ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 199 ----LAGRL-----GVTSLKIYAVLGA---LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred ----HHHHc-----CCccccHHHHHHH---HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 12221 1222222222222 23433 567999999999999999864 1 1
Q ss_pred -----------------hhhHHHhhhcHHH-HHHHHH-HHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 013078 372 -----------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL- 431 (450)
Q Consensus 372 -----------------~~~l~~~ie~i~~-~F~plF-F~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~- 431 (450)
.++++|.+.|... +.+|+| |+-.|..++-.. .. ...+.+++..+++|.++++...+.
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1345566666655 577998 888898884332 11 244566667778998887776654
Q ss_pred ---------cCCChHHHHHHh
Q 013078 432 ---------FGYSMRTSFLVS 443 (450)
Q Consensus 432 ---------~g~~~r~a~~vG 443 (450)
-|.+|++=..+|
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~ 364 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAG 364 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHH
Confidence 245666654443
No 28
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.37 E-value=0.032 Score=55.05 Aligned_cols=107 Identities=21% Similarity=0.419 Sum_probs=77.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhcCCcch-hhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHH
Q 013078 342 LLSAWCSDKLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIV 420 (450)
Q Consensus 342 ll~~~iae~lGls~~LGAFlAGl~ls~~~~~-~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~ 420 (450)
.....+++.++++..++-.++|+++.....+ -+-.+.++.+.++-..++....|+++|++.++.++...+......++.
T Consensus 5 ~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~ 84 (273)
T TIGR00932 5 VLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLV 84 (273)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999864221 011234666778888888999999999999988765544443333333
Q ss_pred H-HHHHHHHHHhcCCChHHHHHHhccCCC
Q 013078 421 K-TAVGTIVTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 421 K-~l~~~l~~~~~g~~~r~a~~vGl~La~ 448 (450)
= +..++...+.++.++.++..+|..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~lg~~ls~ 113 (273)
T TIGR00932 85 PGVLLGLLLGHLLGLALGAAVVIGIILAL 113 (273)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 444555667789999999999987764
No 29
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.28 E-value=0.052 Score=60.07 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHH
Q 013078 337 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVI 415 (450)
Q Consensus 337 ~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~~-~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~ 415 (450)
.++.+.+...++..++++..+|=.++|+++.....+. +-.+.++.+.++-..++.+.+|+++|++.+|......+.+..
T Consensus 13 ~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~ 92 (601)
T PRK03659 13 FLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGA 92 (601)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3444445667888999999999999999997642210 112346667788888888999999999999876443333322
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHhccCC
Q 013078 416 LVIIVKTAVGTIVTKLFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 416 ~~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La 447 (450)
..++.=++..+......|+++..++.+|+.++
T Consensus 93 ~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 93 AQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 22222222233344557899999998887654
No 30
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.20 E-value=0.94 Score=47.45 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=73.6
Q ss_pred HHHHHHHHHHH-HHHHHhc-----hhHHHHHHHHHHHhcCCcc----hhhHHHhhhcHHHHHHHHHHHHHhhccchhhHh
Q 013078 335 LAAVAFCLLSA-WCSDKLG-----LSLELGSFMAGVMISTTDF----AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLW 404 (450)
Q Consensus 335 l~~lal~ll~~-~iae~lG-----ls~~LGAFlAGl~ls~~~~----~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~ 404 (450)
+..+++|+... ++.++++ ++.-.+|++.|+++++... .+-..+.++.++|+-.-+|.+..=|++.+..+.
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~ 303 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELA 303 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555444 3555555 6678899999999998621 222446677888999999988888888888777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 013078 405 NHVDILLAS-VILVIIVKTAVGTIVTKLFGYSMRTSFL 441 (450)
Q Consensus 405 ~~~~~ll~l-v~~~vv~K~l~~~l~~~~~g~~~r~a~~ 441 (450)
+.+..++++ .+-.++.-+...++..|..|-++..++.
T Consensus 304 ~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 304 DLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 654443333 3334455666777888888988887776
No 31
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.21 Score=50.99 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=95.3
Q ss_pred hhccHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (450)
Q Consensus 234 s~TStaVV~~iL~e~~~-~~s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~ 312 (450)
+.|+++-...++.=.+. ..+..--..++.+++||+-++++.|+.-. +.-+ +.. .... ++.+..+.
T Consensus 133 ~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls---~~a---l~~a---~~~i~vL~-- 198 (390)
T COG3004 133 MATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLS---MAA---LGIA---ALAIAVLA-- 198 (390)
T ss_pred cHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCcc---HHH---HHHH---HHHHHHHH--
Confidence 35666666666665542 34444456789999999999988887542 2111 111 1111 11111111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHhcCC-c----chhhHHHhhhcHH-HH
Q 013078 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTT-D----FAKHTLDQVEPIR-NL 385 (450)
Q Consensus 313 ~l~~~l~~~l~~~~~~~~El~ll~~lal~ll~~~ia-e~lGls~~LGAFlAGl~ls~~-~----~~~~l~~~ie~i~-~~ 385 (450)
.++|++-+ +...|++ +.. ..|++ ..-|+|..+...+.|+++|-. + .-++++|.+.|.. -+
T Consensus 199 -----~lN~~~v~---~l~~Y~~--~gv---iLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~ 265 (390)
T COG3004 199 -----VLNRLGVR---RLSPYLL--VGV---ILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFF 265 (390)
T ss_pred -----HHHHhCch---hhhHHHH--HHH---HHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHH
Confidence 12232211 1112222 222 12333 467999999999999999854 2 2366777777775 46
Q ss_pred HHHHH-HHHHhhccc---hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 386 FAALF-LSSIGMLIH---VHFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 386 F~plF-F~sIG~~id---~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
..|+| |+-.|..+. ...+.. ...+.+.+..+++|.++++..++.
T Consensus 266 IlPlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~l 313 (390)
T COG3004 266 ILPLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWL 313 (390)
T ss_pred HHHHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHH
Confidence 67998 888888776 333322 233444556678887777665553
No 32
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.065 Score=56.36 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCc--chhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHH-H
Q 013078 334 QLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-L 410 (450)
Q Consensus 334 ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~--~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~-l 410 (450)
....+..+.....+.+.+|+++++|-.++|+++.... .-.+-.+.++-+.++=..++...+|+++|++.++.+... .
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~ 90 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVG 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhh
Confidence 3445556666778999999999999999999999721 122233445556677777778999999999999987554 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHhccCC
Q 013078 411 LASVILVIIVKTAVGTIVTK-LFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 411 l~lv~~~vv~K~l~~~l~~~-~~g~~~r~a~~vGl~La 447 (450)
.......+..=++....... .+++++++++.+|..++
T Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~ 128 (397)
T COG0475 91 LGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALA 128 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 33322333333233322222 58999999999998765
No 33
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.93 E-value=0.11 Score=56.85 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcch---hhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHH
Q 013078 338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA---KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 414 (450)
Q Consensus 338 lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~---~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv 414 (450)
+.++.....+++.+|++..++-.++|+++.....+ .+-.+..+.+.++..++.....|+++|++.++.++...+.+.
T Consensus 15 l~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la 94 (562)
T PRK05326 15 LLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLA 94 (562)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHH
Confidence 33444556778889999999999999999865222 111234566788999999999999999999998876655443
Q ss_pred HHHHHHHH-HHHHHHHHhcCCChHHHHHHhccCCC
Q 013078 415 ILVIIVKT-AVGTIVTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 415 ~~~vv~K~-l~~~l~~~~~g~~~r~a~~vGl~La~ 448 (450)
...++.=+ +.++...+.+++++.+++.+|..++.
T Consensus 95 ~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~ 129 (562)
T PRK05326 95 TLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGS 129 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhcc
Confidence 33333333 33455566789999999999988765
No 34
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=95.87 E-value=1.5 Score=46.10 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 013078 358 GSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMR 437 (450)
Q Consensus 358 GAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~~~r 437 (450)
-....|++.+..+..+.+ +--+++..+++=+||+.+|+..|+..+.+ ...++...++.+....+..+...|++|.|.+
T Consensus 245 ~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~ 322 (378)
T PF05684_consen 245 TVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLFKIDLF 322 (378)
T ss_pred HHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 344455555544444333 55677889999999999999999999888 4444555667778899999999999999998
Q ss_pred HHHHHh
Q 013078 438 TSFLVS 443 (450)
Q Consensus 438 ~a~~vG 443 (450)
+....+
T Consensus 323 ~~~vAS 328 (378)
T PF05684_consen 323 ELLVAS 328 (378)
T ss_pred HHHHHh
Confidence 876543
No 35
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.87 E-value=0.078 Score=57.78 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHH
Q 013078 337 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL 416 (450)
Q Consensus 337 ~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~ 416 (450)
.+..+.....+++.++++..++-.++|+.++..+...++.-.-+.+..++.|......|+++|.+.++.++..++.+.+.
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~ 85 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFL 85 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 33444455677888899999999999998875322111110011234688899999999999999999988766555444
Q ss_pred HHHHH-HHHHHHHHHhcCCChHHHHHHhccCCC
Q 013078 417 VIIVK-TAVGTIVTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 417 ~vv~K-~l~~~l~~~~~g~~~r~a~~vGl~La~ 448 (450)
.++.- .++++...+..++++..++.+|..+++
T Consensus 86 ~vlit~~~v~~~~~~~~~l~~~~alllGails~ 118 (525)
T TIGR00831 86 LVVVTTVVVGFSLNWILGIPLALALILGAVLSP 118 (525)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCC
Confidence 44433 333444444679999999999998876
No 36
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.71 E-value=0.14 Score=58.08 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCcch----hh----HHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHH
Q 013078 346 WCSDKLGLSLELGSFMAGVMISTTDFA----KH----TLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILV 417 (450)
Q Consensus 346 ~iae~lGls~~LGAFlAGl~ls~~~~~----~~----l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~ 417 (450)
++.+.+.++..+-+.++|+++...... .+ -....+ +.++..++-.+..|++++...++.+|..++.+++..
T Consensus 31 ~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~ 109 (810)
T TIGR00844 31 FVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPV 109 (810)
T ss_pred HHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH
Confidence 444455555556666666665432110 00 011122 667888888899999999999999998776665555
Q ss_pred HHHHHHHHHHHHH-h-cCCChHHHHHHhccCCC
Q 013078 418 IIVKTAVGTIVTK-L-FGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 418 vv~K~l~~~l~~~-~-~g~~~r~a~~vGl~La~ 448 (450)
+..-++++.+..+ + .|+++..++.+|..++|
T Consensus 110 M~lT~livAL~a~~Li~GL~~~~ALLLGAILAP 142 (810)
T TIGR00844 110 MTSGWLVIALFVWILVPGLNFPASLLMGACITA 142 (810)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcC
Confidence 5555555555544 4 59999999999999886
No 37
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.49 E-value=0.17 Score=55.45 Aligned_cols=110 Identities=17% Similarity=0.269 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHH
Q 013078 338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL 416 (450)
Q Consensus 338 lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~~-~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~ 416 (450)
+..++.+..++..++++..+|=.++|+++.....+. +-.+.++.+.++-..++...+|+++|++.++......+...+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444555667788899999999999999997652211 1123466677888888888999999999987754333322222
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHhccCC
Q 013078 417 VIIVKTAVGTIVTKLFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 417 ~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La 447 (450)
.++.=++.++.....+++++.+++.+|..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls 125 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLS 125 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2223334444556677899999999887654
No 38
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=93.76 E-value=11 Score=39.99 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHhcCCc----chhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHH-HHHH
Q 013078 352 GLSLELGSFMAGVMISTTD----FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKT-AVGT 426 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~----~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~-l~~~ 426 (450)
.++.-.+|+++|+++++.- ..+-..+.++.+.++..-+|-+..=|.+++..+.+++..++.+++..++.-. ...+
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~f 323 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIF 323 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777899999999998752 1122334566778888888888888999999999988777766665555444 4556
Q ss_pred HHHHhcCCChHHHHH
Q 013078 427 IVTKLFGYSMRTSFL 441 (450)
Q Consensus 427 l~~~~~g~~~r~a~~ 441 (450)
++.|..|-+ .|+-.
T Consensus 324 v~fr~mg~~-ydaaV 337 (398)
T TIGR00210 324 VTFRLMGKD-YDAAV 337 (398)
T ss_pred HhHHhccch-HHHHH
Confidence 777777777 44444
No 39
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=93.25 E-value=1.4 Score=44.84 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred HhchhHHHHHHHHHHHhcC-C-cchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 350 KLGLSLELGSFMAGVMIST-T-DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 427 (450)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~-~-~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l 427 (450)
..++++.+=|.+.|++++| . ...++...-++.-...++.+=-+..|+++++..+....+..+...+..+..=+..++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 3577888888999999998 3 3333444444444457777778899999999998875443333333334444444444
Q ss_pred HH-HhcCCChHHHHHHhccCC
Q 013078 428 VT-KLFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 428 ~~-~~~g~~~r~a~~vGl~La 447 (450)
.. |.+|.+++.+..+|.+.+
T Consensus 103 lg~r~~~l~~~~~~Lia~Gts 123 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTS 123 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcc
Confidence 45 999999999998887643
No 40
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.94 E-value=1.3 Score=45.62 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcc-hhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHH
Q 013078 338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF-AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL 416 (450)
Q Consensus 338 lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~-~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~ 416 (450)
+++++.-....+..|+++..=|.+.|++++...+ .++..+-++--.-....+=-+..|++++++.+.+-..-.+...+.
T Consensus 22 ~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 22 LAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred HHHHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHH
Confidence 3333333445566777788888889999885432 223333333333455555667889999999998765556666667
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHhcc
Q 013078 417 VIIVKTAVGTIVTKLFGYSMRTSFLVSWL 445 (450)
Q Consensus 417 ~vv~K~l~~~l~~~~~g~~~r~a~~vGl~ 445 (450)
.+..-++.++...+++|.|++.+..+|.+
T Consensus 102 ~l~~t~~~~~~lg~~lgld~~~a~Lia~G 130 (334)
T COG2855 102 TLSSTFLFAYFLGKLLGLDKKLALLIAAG 130 (334)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHcc
Confidence 77778888888899999999999998865
No 41
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=92.79 E-value=1.9 Score=44.71 Aligned_cols=98 Identities=11% Similarity=0.173 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHhcCCcc-hhhHHHhhhcHHHH----HHHHHHHHHhhc-cchhhHhHHH-HHHHHHHHHHHHHHHHH
Q 013078 352 GLSLELGSFMAGVMISTTDF-AKHTLDQVEPIRNL----FAALFLSSIGML-IHVHFLWNHV-DILLASVILVIIVKTAV 424 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~-~~~l~~~ie~i~~~----F~plFF~sIG~~-id~~~l~~~~-~~ll~lv~~~vv~K~l~ 424 (450)
++|...-+.+.|+++..... .++++++......| +.+..++.+|+. .|++.+.+.. +..+.+++..+++=.+.
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 55666677777777766532 34566665555433 334445566876 7898887765 45566666777888888
Q ss_pred HHHHHHhcCC-ChHHHHHHhccCCCC
Q 013078 425 GTIVTKLFGY-SMRTSFLVSWLPKLM 449 (450)
Q Consensus 425 ~~l~~~~~g~-~~r~a~~vGl~La~m 449 (450)
++++.|+.|+ |...++..|++++.|
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~ 308 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGM 308 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCC
Confidence 9999999986 667777778899876
No 42
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.89 E-value=1.2 Score=51.36 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=47.0
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhcCCcch--h---------hHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHH
Q 013078 342 LLSAWCSDKLGLSLELGSFMAGVMISTTDFA--K---------HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVD 408 (450)
Q Consensus 342 ll~~~iae~lGls~~LGAFlAGl~ls~~~~~--~---------~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~ 408 (450)
-++.++.+.++.+.++|=.+||+++...-.+ + +-.+.++.+.++-..+|.+.+|+++|++.++.+..
T Consensus 56 ~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k 133 (832)
T PLN03159 56 RLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133 (832)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcch
Confidence 3445566677888888888888888653111 1 11234667778888888999999999999987643
No 43
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=91.18 E-value=0.044 Score=56.36 Aligned_cols=106 Identities=14% Similarity=0.255 Sum_probs=24.5
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhcCCcch--hhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHH
Q 013078 343 LSAWCSDKLGLSLELGSFMAGVMISTTDFA--KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIV 420 (450)
Q Consensus 343 l~~~iae~lGls~~LGAFlAGl~ls~~~~~--~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~ 420 (450)
....+.+.++++..+|-.++|+++...... ++-.+..+.+.++..++.....|.++|++.++.++...+...+..++.
T Consensus 10 ~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 89 (380)
T PF00999_consen 10 VAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLL 89 (380)
T ss_dssp --------------------------------------S-SSHHHHS--SSHHHHTTGGGG-------------------
T ss_pred HHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeee
Confidence 334468899999999999999999887443 111356677788999998899999999999988877665555554455
Q ss_pred HHHH-HHHHHH---hcCCChHHHHHHhccCCC
Q 013078 421 KTAV-GTIVTK---LFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 421 K~l~-~~l~~~---~~g~~~r~a~~vGl~La~ 448 (450)
-+.. ++.... ..|+++.++...|..+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ 121 (380)
T PF00999_consen 90 PFILVGFLLSFFLFILGLSWAEALLLGAILSA 121 (380)
T ss_dssp ------------------------TTHHHHTT
T ss_pred hhhHHHHHHHHhhccchhhhHHHhhhHHhhhc
Confidence 4444 444442 478899999999987764
No 44
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=91.08 E-value=3 Score=44.43 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHhccCCC
Q 013078 384 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF--GYSMRTSFLVSWLPKL 448 (450)
Q Consensus 384 ~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~--g~~~r~a~~vGl~La~ 448 (450)
.++.|+--..-|+++|.+.++.++..++.+....++...+++....+.. ++|+..++.+|..++|
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilsp 130 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSP 130 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcC
Confidence 7888888888999999999999998887777777777777666666665 8899999999998886
No 45
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=90.54 E-value=1.8 Score=44.12 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=68.9
Q ss_pred HHHHHHHH--hchhHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHH
Q 013078 343 LSAWCSDK--LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIV 420 (450)
Q Consensus 343 l~~~iae~--lGls~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~ 420 (450)
..+++++. ..+...+=+++.|+++.+.+. ++.+..++=..+.+|+|-+..|+.+|++.+.+.....+.+.+..++.
T Consensus 154 ga~gLA~ip~~~lv~lilpILiGmilGNld~--~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~ 231 (312)
T PRK12460 154 GAAGLANIPIMALVAALLPLVLGMILGNLDP--DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIV 231 (312)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhccch--hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHH
Confidence 34444443 233446778899999998542 34455555556789999999999999999988655444444455555
Q ss_pred HHHHHHHHHHhcCCChHHHHHHh
Q 013078 421 KTAVGTIVTKLFGYSMRTSFLVS 443 (450)
Q Consensus 421 K~l~~~l~~~~~g~~~r~a~~vG 443 (450)
-....+...|++|.+.+.+..+|
T Consensus 232 t~~~~~~i~rllg~~~~~g~li~ 254 (312)
T PRK12460 232 TGFFNIFADRLVGGTGIAGAAAS 254 (312)
T ss_pred HHHHHHHHHHHhCCChhHHHHHH
Confidence 56666667788898888877776
No 46
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=90.32 E-value=5.1 Score=41.45 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=62.2
Q ss_pred hchhHHHHHHHHHHHhcCCc---chhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHH-
Q 013078 351 LGLSLELGSFMAGVMISTTD---FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGT- 426 (450)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~---~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~- 426 (450)
.++++.+=|.+.|+++++.- ..++...-++-....++-+=-+..|+++++..+.+.....+...+..+..=+..++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47788888889999998842 11222222222234555666688899999999877655444444444444445444
Q ss_pred HHHHhcCCChHHHHHHhccC
Q 013078 427 IVTKLFGYSMRTSFLVSWLP 446 (450)
Q Consensus 427 l~~~~~g~~~r~a~~vGl~L 446 (450)
+..|.+|.+++.+..+|.+.
T Consensus 109 ~g~k~l~l~~~~~~Lia~Gt 128 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGS 128 (335)
T ss_pred HHHHHhCCChhHHHHHHcch
Confidence 44478999999999888653
No 47
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=88.60 E-value=9.7 Score=34.76 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhchh--HHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHH
Q 013078 339 AFCLLSAWCSDKLGLS--LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLAS 413 (450)
Q Consensus 339 al~ll~~~iae~lGls--~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~l 413 (450)
..+....++.++++++ ..+|+.+++.+++-....+ .+.=..++++-..+-=..+|.++++..+.+ .+...+..
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~--~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~ 82 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE--ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLS 82 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc--CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3444556667777777 6889988888887442111 011112344455555688999999887765 34444555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013078 414 VILVIIVKTAVGTIVTKLFGYSMRTSFLV 442 (450)
Q Consensus 414 v~~~vv~K~l~~~l~~~~~g~~~r~a~~v 442 (450)
++..+..-...+++..+..++|+.+++..
T Consensus 83 ~~~~l~~~~~~~~~l~~~~~~~~~ta~La 111 (156)
T TIGR03082 83 TVLLLALSALLAWLLARLTGVDPLTAFLA 111 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666777788888999999999998743
No 48
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.78 E-value=3.4 Score=42.19 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCCcchhhHHHhhh-cHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHH
Q 013078 336 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 414 (450)
Q Consensus 336 ~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~ie-~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv 414 (450)
.-+..+|....++..+.+|+..|-.+||++.....++---.+.+. .+.++=..+....+|+|+....+...-.+.+--.
T Consensus 13 ~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgA 92 (408)
T COG4651 13 GGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGA 92 (408)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchH
Confidence 345566677789999999999999999999974322111111222 2345555666789999999998765322222111
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHhccCC
Q 013078 415 ILVIIVKTAVGTIVTKLFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 415 ~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La 447 (450)
+.-+..-..-..-..+..|+++-..+..|+.++
T Consensus 93 l~qia~at~lg~gL~~~lgws~~~glvfGlaLS 125 (408)
T COG4651 93 LAQIALATLLGMGLSSLLGWSFGTGIVFGLALS 125 (408)
T ss_pred HHHHHHHHHHHhHHHHHcCCCcccceeeeehhh
Confidence 111112222233445566777777777777664
No 49
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=83.68 E-value=3.9 Score=38.91 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCcchhhHHHhhhcHHH--HHHHHHHHHHhhccchh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013078 357 LGSFMAGVMISTTDFAKHTLDQVEPIRN--LFAALFLSSIGMLIHVH---FLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (450)
Q Consensus 357 LGAFlAGl~ls~~~~~~~l~~~ie~i~~--~F~plFF~sIG~~id~~---~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~ 431 (450)
++++++|+++......+ .+..+...+ +..-+|++.+.+.-|.. .++...+-.+.+-+..+++-.+++++..++
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888776542222 112244444 44444444444444533 333323345555667778889999999999
Q ss_pred cCCChHHHHHHhccC
Q 013078 432 FGYSMRTSFLVSWLP 446 (450)
Q Consensus 432 ~g~~~r~a~~vGl~L 446 (450)
.+++.+|++.+|.++
T Consensus 80 l~~~~~~~lav~sG~ 94 (191)
T PF03956_consen 80 LGLSLKESLAVASGF 94 (191)
T ss_pred hcCCHHHHHHHHccC
Confidence 999999999988764
No 50
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=78.35 E-value=10 Score=34.82 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHHhcCCcchhh----HH-HhhhcHHHHHHHHHHHHHhhccchhhHhH---HH--HHHHHHHHHHHHHH
Q 013078 352 GLSLELGSFMAGVMISTTDFAKH----TL-DQVEPIRNLFAALFLSSIGMLIHVHFLWN---HV--DILLASVILVIIVK 421 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~~~~----l~-~~ie~i~~~F~plFF~sIG~~id~~~l~~---~~--~~ll~lv~~~vv~K 421 (450)
.+...-|++++|+++++....+. +. +....++++...+|...+|++.-+.++.. +. .......++.++.-
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~ 99 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPT 99 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34445689999999987533211 11 22334689999999999999998887643 22 12222233333444
Q ss_pred HHHHHHHHHhcCCChHH
Q 013078 422 TAVGTIVTKLFGYSMRT 438 (450)
Q Consensus 422 ~l~~~l~~~~~g~~~r~ 438 (450)
.+..++..+.+|+|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 100 LLVAVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 55666666788888754
No 51
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=77.81 E-value=95 Score=32.46 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhH--HHHHHHHHHHhcCCcchhhHHHhhhc-HHHHHHHHHHHHHhhccchhhHhHHH---
Q 013078 334 QLAAVAFCLLSAWCSDKLGLSL--ELGSFMAGVMISTTDFAKHTLDQVEP-IRNLFAALFLSSIGMLIHVHFLWNHV--- 407 (450)
Q Consensus 334 ll~~lal~ll~~~iae~lGls~--~LGAFlAGl~ls~~~~~~~l~~~ie~-i~~~F~plFF~sIG~~id~~~l~~~~--- 407 (450)
+...+...++...+..++++.. .+|+++.|..++-.-. +..++.. ...+-..+.=..||.++|-..+....
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~---~~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGG---ITIQLPAWLLAVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccc---eeeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 4455555666667777777764 7899999988875421 1111111 11233444457899999987765532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 013078 408 DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFL 441 (450)
Q Consensus 408 ~~ll~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~ 441 (450)
...+..++..++.-...+++..+..+.++.+++.
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L 300 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL 300 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2233444455566667778888888999888765
No 52
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=77.66 E-value=13 Score=40.97 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHHhcCCcchhhHHHhhh-cHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHHHHHH
Q 013078 352 GLSLELGSFMAGVMISTTDFAKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTI 427 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~~~~l~~~ie-~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l~~~l 427 (450)
.+...-|++++|+++.+.... +. .+++++..+|-.++|++.-|.|+.. ..+-...+.+++++.-.+.++.
T Consensus 34 ~LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~ 107 (562)
T TIGR03802 34 QLGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSGLITVYA 107 (562)
T ss_pred ecchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 334456889999999875331 22 2578999999999999999998754 2222223333344445677778
Q ss_pred HHHhcCCChHHH
Q 013078 428 VTKLFGYSMRTS 439 (450)
Q Consensus 428 ~~~~~g~~~r~a 439 (450)
..+.+|++..++
T Consensus 108 ~~~~~g~~~~~~ 119 (562)
T TIGR03802 108 LAKIFGLDKGTA 119 (562)
T ss_pred HHHHhCCCHHHH
Confidence 888899986553
No 53
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=77.01 E-value=1e+02 Score=32.32 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=60.0
Q ss_pred chhHHHHHHHHHHHhcCCcc---hhhH-HHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHH-HHHHHHHHHHH
Q 013078 352 GLSLELGSFMAGVMISTTDF---AKHT-LDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVI-LVIIVKTAVGT 426 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~---~~~l-~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~-~~vv~K~l~~~ 426 (450)
.++.-.+|+++|+++++.-. ..++ .+.++.+.++..-+|-+..=+.+++..+.+++..++.+++ -.++.=+...+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999987511 1112 2345566777777777777788999999887665554433 33344455567
Q ss_pred HHHHhcCCChHHHHH
Q 013078 427 IVTKLFGYSMRTSFL 441 (450)
Q Consensus 427 l~~~~~g~~~r~a~~ 441 (450)
+..|..|-++..++.
T Consensus 326 v~fr~~gkdydaavm 340 (368)
T PF03616_consen 326 VTFRVMGKDYDAAVM 340 (368)
T ss_pred HhhhhhCCChhHHHH
Confidence 778888888755553
No 54
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=75.10 E-value=59 Score=34.67 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=67.6
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCc-chhhHHHhhh---cH-HHHHHHHHHHHHhhc-cchhhHhHHHHH-HHHHHHHHH
Q 013078 346 WCSDKLGLSLELGSFMAGVMISTTD-FAKHTLDQVE---PI-RNLFAALFLSSIGML-IHVHFLWNHVDI-LLASVILVI 418 (450)
Q Consensus 346 ~iae~lGls~~LGAFlAGl~ls~~~-~~~~l~~~ie---~i-~~~F~plFF~sIG~~-id~~~l~~~~~~-ll~lv~~~v 418 (450)
.+...+++|...-..+.=.+++-.+ ..+++++... .+ ..-+.+...+.+|.. .|++.+...... -+..++..+
T Consensus 264 ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~V 343 (414)
T PF03390_consen 264 LLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATV 343 (414)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHH
Confidence 4556667776555555544444332 1334444333 33 235556667888988 899888775433 344455666
Q ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHhccCCCC
Q 013078 419 IVKTAVGTIVTKLFGY-SMRTSFLVSWLPKLM 449 (450)
Q Consensus 419 v~K~l~~~l~~~~~g~-~~r~a~~vGl~La~m 449 (450)
++-.++++++.++.|+ |...++..|++++.|
T Consensus 344 l~~~~~a~~vG~l~g~YPvEsAItaGLC~an~ 375 (414)
T PF03390_consen 344 LGAVIGAFLVGKLVGFYPVESAITAGLCMANM 375 (414)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhcccCC
Confidence 7788889999999985 667788888899876
No 55
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=74.17 E-value=1.1e+02 Score=31.34 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HHHHHHHHHHHhcCCcch-hhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHH---H
Q 013078 334 QLAAVAFCLLSAWCSDKLGLS--LELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---V 407 (450)
Q Consensus 334 ll~~lal~ll~~~iae~lGls--~~LGAFlAGl~ls~~~~~-~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~---~ 407 (450)
....+..+....++.+.++++ ..+|+++++.+++..... -..- +.+.+.-..+.=.++|.+++...+.+. .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P---~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~ 233 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLP---PWLVNAAQVLIGASIGSRFTRETLRELRRLL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 344555667788889988887 489999988888754211 1111 123444455556889999998877653 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013078 408 DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLV 442 (450)
Q Consensus 408 ~~ll~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~v 442 (450)
...+..++..+..-.+.+++..+.+++++.+++..
T Consensus 234 ~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La 268 (318)
T PF05145_consen 234 PPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA 268 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33444455566677788888899999999888753
No 56
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=73.81 E-value=72 Score=33.84 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhccchhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLWNHVDIL---LASVILVIIVKTAVGTIVTKLFGYSMRTSFLV 442 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~~~~~~l---l~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~v 442 (450)
++++|+.+||+++|+..+.+.++.....+ +.+.......+.+......+.+|.++.-....
T Consensus 65 l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~ 128 (398)
T TIGR00210 65 LRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLA 128 (398)
T ss_pred HHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHh
Confidence 56899999999999999999887643322 23333456778888888888999998877774
No 57
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=72.21 E-value=20 Score=33.46 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred HhchhHHHHHHHHHHHhcCCcchhh--HHHhh-hcHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHH
Q 013078 350 KLGLSLELGSFMAGVMISTTDFAKH--TLDQV-EPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTA 423 (450)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~~~~--l~~~i-e~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l 423 (450)
.+.+...-|++++|+.+++...+.. ..... +.++++...+|..++|++.-+.++.. +....+.+-+++.+.-.+
T Consensus 20 ~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~ 99 (169)
T PF06826_consen 20 GFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLL 99 (169)
T ss_pred ceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455566788888998887532111 12222 34589999999999999998887644 323333333344455555
Q ss_pred HHHHHHH-hcCCChHH
Q 013078 424 VGTIVTK-LFGYSMRT 438 (450)
Q Consensus 424 ~~~l~~~-~~g~~~r~ 438 (450)
.++...+ .+|+|+-+
T Consensus 100 ~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 100 IALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 5666666 88888654
No 58
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=71.11 E-value=82 Score=28.64 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=31.5
Q ss_pred HhhhcHHHHH---HHHHH--HHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 377 DQVEPIRNLF---AALFL--SSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 427 (450)
Q Consensus 377 ~~ie~i~~~F---~plFF--~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l 427 (450)
+.+++..+++ +|+|| +.+|..-..+.+.++++.++..+++.++.=++++..
T Consensus 56 ~~v~~~a~~LL~~m~LfFVPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~ 111 (141)
T PRK04125 56 EQVESLGTALTNNIGFLFVPSGISVINSLGVMSQYPVQIIGVIIVATILLLACTGL 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555533 47777 678887788888888776665555554444444433
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=70.77 E-value=24 Score=38.99 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHhcCCcchhh----HHHh-hhcHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHHH
Q 013078 353 LSLELGSFMAGVMISTTDFAKH----TLDQ-VEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAV 424 (450)
Q Consensus 353 ls~~LGAFlAGl~ls~~~~~~~----l~~~-ie~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l~ 424 (450)
+....|++++|++++....... +-+. ...++++...+|.+.+|++--+.++.. +.+.++.+-+++++.=.+.
T Consensus 415 lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~ 494 (562)
T TIGR03802 415 LGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLII 494 (562)
T ss_pred ehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4556799999999987532211 2222 223689999999999999999887643 2222222223333333344
Q ss_pred HHHHH-HhcCCChHH
Q 013078 425 GTIVT-KLFGYSMRT 438 (450)
Q Consensus 425 ~~l~~-~~~g~~~r~ 438 (450)
+++.. +.+|+++-.
T Consensus 495 ~~~~~~~~~~~~~~~ 509 (562)
T TIGR03802 495 TMLIGKYVLKYDPAL 509 (562)
T ss_pred HHHHHHHHhCCCHHH
Confidence 54545 678887654
No 60
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=69.13 E-value=59 Score=36.01 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChHHHHHHhccCCC
Q 013078 383 RNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL---------FGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 383 ~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~---------~g~~~r~a~~vGl~La~ 448 (450)
-.+++|.-..--|.+++.+.+..++..++.+.+..++.-.+.+....+. .++++.+++.+|..+++
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSa 143 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISA 143 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcC
Confidence 4577888888899999999999988766655555444444444333331 25699999999988876
No 61
>PRK04972 putative transporter; Provisional
Probab=68.46 E-value=26 Score=38.68 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 013078 352 GLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIV 428 (450)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l~~~l~ 428 (450)
.+...-|++++|+++.+.... .-..+++++..+|..++|++.-+.++.. +......+.+++++.-.+.++..
T Consensus 36 ~LG~~~g~L~vgl~~g~~~~~-----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 110 (558)
T PRK04972 36 QLGNSIGVLVVSLLLGQQHFS-----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGL 110 (558)
T ss_pred ecCcchHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566889999999875432 1223468999999999999999988754 22222233333344445556667
Q ss_pred HHhcCCChHHH
Q 013078 429 TKLFGYSMRTS 439 (450)
Q Consensus 429 ~~~~g~~~r~a 439 (450)
.+++|+++-++
T Consensus 111 ~~~~~~~~~~~ 121 (558)
T PRK04972 111 GKLFGWDIGLT 121 (558)
T ss_pred HHHhCCCHHHH
Confidence 78888886543
No 62
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=65.67 E-value=34 Score=36.20 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHhhccchhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013078 381 PIRNLFAALFLSSIGMLIHVHFLWNHVDIL---LASVILVIIVKTAVGTIVTKLFGYSMRTSFLV 442 (450)
Q Consensus 381 ~i~~~F~plFF~sIG~~id~~~l~~~~~~l---l~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~v 442 (450)
++++.|+.+||+++|+..++..+...+-.+ +.......+..-.......++.|.++.-++..
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~glla 130 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLA 130 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHh
Confidence 578999999999999999999887754322 22233344556666666677778877766666
No 63
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=63.88 E-value=55 Score=34.23 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhccchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHh
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLWNHVDI---LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVS 443 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~~~~~~---ll~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~vG 443 (450)
+.++|+..||+++|+..++..+...+.. .+.+.........+........++.++.-.+..|
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~G 129 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAG 129 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhc
Confidence 5789999999999999998887664322 2233333456677777777788888877766554
No 64
>PRK03818 putative transporter; Validated
Probab=60.64 E-value=47 Score=36.68 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCcc--hhhHHHhhh-cHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 357 LGSFMAGVMISTTDF--AKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTK 430 (450)
Q Consensus 357 LGAFlAGl~ls~~~~--~~~l~~~ie-~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l~~~l~~~ 430 (450)
-|++++|+++++... ...+.+... -++++...+|...+|++.-+.++.. +.+....+-+++++.-.+.++...+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHK 113 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888887311 111222222 3689999999999999999988754 2222222223333444455666678
Q ss_pred hcCCChHH
Q 013078 431 LFGYSMRT 438 (450)
Q Consensus 431 ~~g~~~r~ 438 (450)
.+|+++-+
T Consensus 114 ~~~~~~~~ 121 (552)
T PRK03818 114 LFGIPLPV 121 (552)
T ss_pred HhCCCHHH
Confidence 88888654
No 65
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=60.62 E-value=1.2e+02 Score=31.79 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhchh--HHHH-HHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhH---HHHHHH
Q 013078 338 VAFCLLSAWCSDKLGLS--LELG-SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILL 411 (450)
Q Consensus 338 lal~ll~~~iae~lGls--~~LG-AFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll 411 (450)
+.+.+..+++.+.+|++ ..+| ..++|+...-....-..-+. ++.+-..+-=..+|.++.++.+.+ +|...+
T Consensus 15 l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~~---l~~~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~ 91 (352)
T COG3180 15 LLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPRG---LFKAGQVILGIMIGASLTPSVLDTLKSNWPIVL 91 (352)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCChH---HHHHHHHHHHHHHhhhcCHHHHHHHHHcccHHH
Confidence 33444566677776665 4678 56666655533221111111 223333444577899998886654 577777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 013078 412 ASVILVIIVKTAVGTIVTKLFGYSMRTSFLV 442 (450)
Q Consensus 412 ~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~v 442 (450)
.+++..+..-.+..++..|+.++|..|++.-
T Consensus 92 ~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~g 122 (352)
T COG3180 92 VVLLLTLLSSILLGWLLKRFSILPGNTAFLG 122 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhhHh
Confidence 7777778888888888888888888887653
No 66
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=60.36 E-value=1.5e+02 Score=31.44 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=57.4
Q ss_pred HHHHHhchhHHHHHHHHHH-HhcCCc-chhhHHHhhhcHHH-----HHHHHHHHHHhhc-cchhhHhHHHHH-HHHHHHH
Q 013078 346 WCSDKLGLSLELGSFMAGV-MISTTD-FAKHTLDQVEPIRN-----LFAALFLSSIGML-IHVHFLWNHVDI-LLASVIL 416 (450)
Q Consensus 346 ~iae~lGls~~LGAFlAGl-~ls~~~-~~~~l~~~ie~i~~-----~F~plFF~sIG~~-id~~~l~~~~~~-ll~lv~~ 416 (450)
.+.+.++++......+.=. .+...+ ..+++++--..+.+ +.-|+ .+.+|.. .|+..+...... -+..++.
T Consensus 282 il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~~L-m~giGv~ytdl~ev~~alt~~~vii~~~ 360 (438)
T COG3493 282 ILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQFFSKNLTWPL-MAGIGVAYTDLNEVAAALTWQNVIIALS 360 (438)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHHHH-HHhhhhccccHHHHHHHhchhHHHHHHH
Confidence 4566777774442222111 112111 23445544433433 33344 3567776 677776554222 2333445
Q ss_pred HHHHHHHHHHHHHHhcCC-ChHHHHHHhccCCCC
Q 013078 417 VIIVKTAVGTIVTKLFGY-SMRTSFLVSWLPKLM 449 (450)
Q Consensus 417 ~vv~K~l~~~l~~~~~g~-~~r~a~~vGl~La~m 449 (450)
++++-..+.+++.|+.|+ |...+...|++++.|
T Consensus 361 vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~ 394 (438)
T COG3493 361 VVLGAILGGAFVGRLMGFYPVEAAITAGLCMANM 394 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCC
Confidence 566777888899999885 667777777999887
No 67
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=58.52 E-value=41 Score=33.97 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHhcCCc--chhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 353 LSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 430 (450)
Q Consensus 353 ls~~LGAFlAGl~ls~~~--~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~ 430 (450)
.++.+=|.++|++++-.+ ..+-+.+.++.+++.-.|+=...+|+.++.......+......++..++.-.+.++....
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777776542 235567778888999999999999999988777655555555555666666666677777
Q ss_pred hcCCCh
Q 013078 431 LFGYSM 436 (450)
Q Consensus 431 ~~g~~~ 436 (450)
..+.+.
T Consensus 261 ~~~l~~ 266 (321)
T TIGR00946 261 LIGLRG 266 (321)
T ss_pred HhCCCh
Confidence 777754
No 68
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=56.84 E-value=82 Score=28.62 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcH---HHHHH--HHHHhhCcCCccchhhHHH----------------------
Q 013078 165 DLRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYL--LAGSIIGPGGLKFISELVQ---------------------- 217 (450)
Q Consensus 165 d~~li~~l~iilv~a~i~g~l~~rlglP~---ivGyI--laGilLGPsgL~~I~~l~q---------------------- 217 (450)
..+.+.++++++.+..++-++.+-+++|- ++|.+ +..+..+..-.+++++..+
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPagVGim~~~~ 85 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALTNNIGFLFVPSGISVINSLG 85 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHhHHHHhHH
Confidence 35688899999999988888888777663 56643 3333444444444443222
Q ss_pred ---HhcCchHHHHHHHHHhhhccHHHHHHHHHhc
Q 013078 218 ---LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ 248 (450)
Q Consensus 218 ---l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~ 248 (450)
--+++...+++++.++.+..|+.+...+...
T Consensus 86 ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r~ 119 (141)
T PRK04125 86 VMSQYPVQIIGVIIVATILLLACTGLFSQFILGK 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1134566777888888888888888776553
No 69
>PRK04972 putative transporter; Provisional
Probab=56.79 E-value=38 Score=37.46 Aligned_cols=90 Identities=11% Similarity=0.170 Sum_probs=56.2
Q ss_pred HhchhHHHHHHHHHHHhcCCcchhhHHHhh-----hcHHHHHHHHHHHHHhhccchhhHhH---HHHHH-HHHHHHHHHH
Q 013078 350 KLGLSLELGSFMAGVMISTTDFAKHTLDQV-----EPIRNLFAALFLSSIGMLIHVHFLWN---HVDIL-LASVILVIIV 420 (450)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~~~~l~~~i-----e~i~~~F~plFF~sIG~~id~~~l~~---~~~~l-l~lv~~~vv~ 420 (450)
.+++...-|+.++|++++.........-++ ..++++-+.+|.+.+|++--+.++.. +.+.+ +..+++.++.
T Consensus 407 ~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~ 486 (558)
T PRK04972 407 SFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVP 486 (558)
T ss_pred eeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345556778999999999753332222222 23689999999999999998876643 23322 2223333333
Q ss_pred HHHHHHHHHHhcCCChHHH
Q 013078 421 KTAVGTIVTKLFGYSMRTS 439 (450)
Q Consensus 421 K~l~~~l~~~~~g~~~r~a 439 (450)
-.++.++..+.+|+++-+.
T Consensus 487 ~~~~~~~~~~~~k~~~~~~ 505 (558)
T PRK04972 487 VVICFLFGAYVLRMNRALL 505 (558)
T ss_pred HHHHHHHHHHHHcCCHHHH
Confidence 4444455556788887643
No 70
>PRK01658 holin-like protein; Validated
Probab=53.94 E-value=1.1e+02 Score=26.98 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcH---HHHHH--HHHHhhCcCCccchhhHHH----------------------H
Q 013078 166 LRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYL--LAGSIIGPGGLKFISELVQ----------------------L 218 (450)
Q Consensus 166 ~~li~~l~iilv~a~i~g~l~~rlglP~---ivGyI--laGilLGPsgL~~I~~l~q----------------------l 218 (450)
.+.+.++.+++.+..++..+.+.+++|- ++|.+ +..+..|..-.+++++..+ +
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~l 83 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIELGAETLLAELPLFFIPSAVGVMNYGDF 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Confidence 3678888888888888877778777653 56643 3444445544555543222 1
Q ss_pred ---hcCchHHHHHHHHHhhhccHHHHHHHHHhc
Q 013078 219 ---CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ 248 (450)
Q Consensus 219 ---~G~~~~~al~iG~~Ls~TStaVV~~iL~e~ 248 (450)
-|++...+..++..+.+..|+.+.+.+.++
T Consensus 84 l~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~~ 116 (122)
T PRK01658 84 LSSKGISLFLVVVISTFVVMIVTGYLTQLLAKR 116 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 134556677777778888888877776654
No 71
>PRK01821 hypothetical protein; Provisional
Probab=53.38 E-value=1.7e+02 Score=26.29 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=31.7
Q ss_pred hhhcHHHHH---HHHHH--HHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 378 QVEPIRNLF---AALFL--SSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVT 429 (450)
Q Consensus 378 ~ie~i~~~F---~plFF--~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~ 429 (450)
.+++-.+++ +++|| +.+|.--..+.+.++++.++..++..++.=++++....
T Consensus 59 ~v~~~a~~LL~~m~LfFVPa~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~ 115 (133)
T PRK01821 59 WVKPGCSLLIRYMALLFVPIGVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSS 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443 36777 67787778888888877766655555544444444433
No 72
>PRK01821 hypothetical protein; Provisional
Probab=49.60 E-value=1.3e+02 Score=27.14 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcH---HHHH--HHHHHhhCcCCccchhhHHH----------------------
Q 013078 165 DLRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGY--LLAGSIIGPGGLKFISELVQ---------------------- 217 (450)
Q Consensus 165 d~~li~~l~iilv~a~i~g~l~~rlglP~---ivGy--IlaGilLGPsgL~~I~~l~q---------------------- 217 (450)
-.+.+.++++++.+..++..+.+-+++|- ++|. ++..+..|..-..++++..+
T Consensus 8 ~~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~~~v~~~a~~LL~~m~LfFVPa~VGim~~~~ 87 (133)
T PRK01821 8 IWQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPAKWVKPGCSLLIRYMALLFVPIGVGVMQYYD 87 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35678889999999988888888787653 5563 33444555554445543222
Q ss_pred H---hcCchHHHHHHHHHhhhccHHHHHHHHHhcc
Q 013078 218 L---CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQN 249 (450)
Q Consensus 218 l---~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~ 249 (450)
+ -+++...+++++.++.+..|+.+.+.+.+++
T Consensus 88 ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~~ 122 (133)
T PRK01821 88 LLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGER 122 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 1345566777788888888888888776543
No 73
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=47.94 E-value=2e+02 Score=30.02 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhc
Q 013078 383 RNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVSW 444 (450)
Q Consensus 383 ~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl 444 (450)
+++|-|+-|..+|...|+..+..++...+.-. ..-++- ..++......|++.+|+-.+|+
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~~llGa-aAQ~Gi-f~t~~~A~~lGf~~~eAAsIgI 127 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKTLLLGA-AAQFGI-FATFLGAILLGFTPKEAASIGI 127 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHHHHHHH-HHHHhH-HHHHHHHHHhCCCHHHhhHhhh
Confidence 36999999999999999999988876643222 222222 3355556667999999887775
No 74
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=47.55 E-value=33 Score=35.14 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Q 013078 356 ELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHV--DILLASVILVIIVKTAVGTIVTKLF 432 (450)
Q Consensus 356 ~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~--~~ll~lv~~~vv~K~l~~~l~~~~~ 432 (450)
.+=-++.|+++.|.+ +++.+-+.+-....+|+|-..+|..+|++.+++.. .+++.+. .++.-....++.-|+.
T Consensus 174 ~ilPlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~--v~~vtG~~~~~~dr~~ 248 (314)
T TIGR00793 174 AVLPFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVS--VIILTGIPLILADKFI 248 (314)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHH--HHHHHhHHHHHHHHHh
Confidence 344678999999864 35666777777899999999999999999887752 3333332 2233334455566655
No 75
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=46.84 E-value=3.5e+02 Score=28.03 Aligned_cols=35 Identities=11% Similarity=0.286 Sum_probs=29.2
Q ss_pred hhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHH
Q 013078 372 AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 406 (450)
Q Consensus 372 ~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~ 406 (450)
.++..+.+..++.++..+=++.+|+++|++.+.+.
T Consensus 271 p~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~ 305 (335)
T TIGR00698 271 PGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKA 305 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHc
Confidence 34566677788889999999999999999999764
No 76
>PRK01658 holin-like protein; Validated
Probab=45.74 E-value=2.1e+02 Score=25.20 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=32.8
Q ss_pred HhhhcHHHHH---HHHHH--HHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 377 DQVEPIRNLF---AALFL--SSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVT 429 (450)
Q Consensus 377 ~~ie~i~~~F---~plFF--~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~ 429 (450)
+.+++-.+++ +++|| +.+|.--..+.+.++++.++..++..++.=++++....
T Consensus 53 ~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~ 110 (122)
T PRK01658 53 KWIELGAETLLAELPLFFIPSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLT 110 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555543 47777 67777777888888887766665555555444444433
No 77
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=40.42 E-value=1.6e+02 Score=30.15 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCc-chhhHHHhhhcH-HHHHHHHH-HHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 013078 359 SFMAGVMISTTD-FAKHTLDQVEPI-RNLFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYS 435 (450)
Q Consensus 359 AFlAGl~ls~~~-~~~~l~~~ie~i-~~~F~plF-F~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~~ 435 (450)
..+.|....+.+ ..++..+.+..+ .+++.|.+ |..+.-..+...+.+.|...+.. ++..+.-++..++..+.++.+
T Consensus 12 ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 90 (385)
T PF03547_consen 12 IILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFA-FIIFILGLLLGFLLSRLFRLP 90 (385)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 334455554432 344555666666 47888877 67777766666555544433333 233333355566667766666
Q ss_pred hHHH
Q 013078 436 MRTS 439 (450)
Q Consensus 436 ~r~a 439 (450)
.++.
T Consensus 91 ~~~~ 94 (385)
T PF03547_consen 91 KEWR 94 (385)
T ss_pred cccc
Confidence 5543
No 78
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=38.69 E-value=68 Score=33.75 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhc
Q 013078 384 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVSW 444 (450)
Q Consensus 384 ~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl 444 (450)
++|-|+-|..+|...|+..+..++...+..-+..-++-+. ++......|++.+|+-.+|+
T Consensus 105 gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgI 164 (399)
T TIGR03136 105 SLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGT 164 (399)
T ss_pred ccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhh
Confidence 5899999999999999999988876554422222233222 34455567999999888775
No 79
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=37.40 E-value=37 Score=34.81 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHH
Q 013078 357 LGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 406 (450)
Q Consensus 357 LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~ 406 (450)
+=-++.|+++.|.+ +++.+-+.|-....+|+|-..+|..+|+..+.+.
T Consensus 175 llP~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 175 LLPIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred HHHHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHh
Confidence 44678999999864 3566777777889999999999999999998875
No 80
>PRK03818 putative transporter; Validated
Probab=36.77 E-value=1.3e+02 Score=33.23 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCcchhhHHHh-----hhcHHHHHHHHHHHHHhhccchhhHhH----HHHHHHHHHHHHHHHHHHHHH
Q 013078 356 ELGSFMAGVMISTTDFAKHTLDQ-----VEPIRNLFAALFLSSIGMLIHVHFLWN----HVDILLASVILVIIVKTAVGT 426 (450)
Q Consensus 356 ~LGAFlAGl~ls~~~~~~~l~~~-----ie~i~~~F~plFF~sIG~~id~~~l~~----~~~~ll~lv~~~vv~K~l~~~ 426 (450)
.-|++++|++++.......+... -..++++=..+|.+++|++--+.++.. +.+.++.+-+++++.=.+.++
T Consensus 403 ~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~ 482 (552)
T PRK03818 403 AGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVG 482 (552)
T ss_pred chHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 45799999999876443222222 334578999999999999998887755 122222222333333334444
Q ss_pred HH-HHhcCCChHH
Q 013078 427 IV-TKLFGYSMRT 438 (450)
Q Consensus 427 l~-~~~~g~~~r~ 438 (450)
.. .+.+|+++-.
T Consensus 483 ~~~~~~~~~~~~~ 495 (552)
T PRK03818 483 ILARMLAKMNYLT 495 (552)
T ss_pred HHHHHHHcCCHHH
Confidence 44 4667887654
No 81
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=36.21 E-value=18 Score=30.94 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=12.4
Q ss_pred CccceeeeccCCeeeeccCCCCcc
Q 013078 137 DDEMTLIDKKDNVFVMSNKKSKYP 160 (450)
Q Consensus 137 ~~~~~lid~~~n~~~~s~p~~~~~ 160 (450)
.+-++|||++++.|.+..+.+..+
T Consensus 32 ~~~D~LIDs~G~~y~l~~~~~~~~ 55 (101)
T PF13642_consen 32 SDDDRLIDSQGQSYQLKQSNSNKL 55 (101)
T ss_dssp -TT--EEETT-EEEEE-T-----T
T ss_pred CCCCEEEeCCCCEEEeccccccch
Confidence 456799999999999998665443
No 82
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=35.29 E-value=1.1e+02 Score=32.80 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhccchhhH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFL 403 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l 403 (450)
+.|.++.+||..+|+++--..+
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~~ 87 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREFV 87 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHHh
Confidence 3689999999999999955443
No 83
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=34.98 E-value=2.5e+02 Score=28.74 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCc-chhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013078 357 LGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKLF 432 (450)
Q Consensus 357 LGAFlAGl~ls~~~-~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l~~~l~~~~~ 432 (450)
+|+.++..+.+... ..-.. =.++++....+-=+.+|.++++..+.+ +|...+..++..+..-.+..++..|..
T Consensus 3 lG~~ia~~~~~~~~~~~~~~---p~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 79 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRV---PRRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRIS 79 (318)
T ss_pred hHHHHHHHHHHHhCCCccCC---CHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666666665332 11111 112355666666788999999987655 344445555566677788888889999
Q ss_pred CCChHHHHHHh
Q 013078 433 GYSMRTSFLVS 443 (450)
Q Consensus 433 g~~~r~a~~vG 443 (450)
+++..++++-+
T Consensus 80 ~~d~~TA~~~~ 90 (318)
T PF05145_consen 80 GLDRATAFFAS 90 (318)
T ss_pred CCChhHHHHHc
Confidence 99999988754
No 84
>PRK09371 gas vesicle synthesis protein GvpA; Provisional
Probab=34.88 E-value=25 Score=27.87 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHhcc
Q 013078 57 GDGSIAKMFDRVLEKE 72 (450)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (450)
+..++|+++||.|+|-
T Consensus 5 ~s~sLadvldriLDKG 20 (68)
T PRK09371 5 DSSSLAEVIDRILDKG 20 (68)
T ss_pred CcccHHHHHHHHccCC
Confidence 3459999999999874
No 85
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=33.34 E-value=4.7e+02 Score=28.06 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=61.6
Q ss_pred HhchhHHHHHHHHHHHhcCCcchhhHHHhhhcH------HHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHH
Q 013078 350 KLGLSLELGSFMAGVMISTTDFAKHTLDQVEPI------RNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTA 423 (450)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~~~~l~~~ie~i------~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l 423 (450)
|+|....+.-|....+....-..+...+.++.+ -+||+...-+..=+.+|-..+.+...-.+..++..++.-++
T Consensus 57 yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~ 136 (414)
T PF03390_consen 57 YIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFL 136 (414)
T ss_pred cCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666665443333444444443 45777776666667778888877665555555666677777
Q ss_pred HHHHHHHhcCCChHHHHHH
Q 013078 424 VGTIVTKLFGYSMRTSFLV 442 (450)
Q Consensus 424 ~~~l~~~~~g~~~r~a~~v 442 (450)
.+.++..++|++++|++..
T Consensus 137 ~g~lvG~l~G~~~~~~i~~ 155 (414)
T PF03390_consen 137 LGGLVGMLFGYSFKDAIFY 155 (414)
T ss_pred HHHHHHHHhCCCHHHHHHH
Confidence 8888899999999998753
No 86
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=29.93 E-value=1.5e+02 Score=26.96 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 299 VLSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 299 ~l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
.++.|+++.+++.+++.||+.+.+..|.
T Consensus 28 ~~inFliL~~lL~k~l~~Pi~~~l~~R~ 55 (156)
T CHL00118 28 MALQFLLLMVLLNIILYKPLLKVLDERK 55 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888999999999887654
No 87
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=29.54 E-value=1.5e+02 Score=32.95 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhccchhhHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcCCChHHHHHHhccCCC
Q 013078 384 NLFAALFLSSIGMLIHVHFLWNHVDILLASVIL---------VIIVKTAVGTIVTKLFGYSMRTSFLVSWLPKL 448 (450)
Q Consensus 384 ~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~---------~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La~ 448 (450)
.++.|---.-.|.+++...+..+..-++...+. ....|.... .....+++++|++..|-.++.
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSA 174 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISA 174 (575)
T ss_pred HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcc
Confidence 445555456678999988888775543332222 222222222 223457899999999987653
No 88
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=29.00 E-value=1.5e+02 Score=27.42 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 300 LSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 300 l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
++.|+++.+++.+++.||+.+.+..+.
T Consensus 25 iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 25 VLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888899999999888764
No 89
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=28.32 E-value=7e+02 Score=27.32 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhccchhhHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhccCC
Q 013078 383 RNLFAALFLSSIGMLIHVHFLWNHVDILL-ASVILVIIVKTAVGTIVTKLFGYSMRTSFLVSWLPK 447 (450)
Q Consensus 383 ~~~F~plFF~sIG~~id~~~l~~~~~~ll-~lv~~~vv~K~l~~~l~~~~~g~~~r~a~~vGl~La 447 (450)
.++-..+-..--|+..+++.+....+..+ ..++.+++--.+....+.+.++.+|-|++.+|-...
T Consensus 64 g~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVg 129 (574)
T COG3263 64 GNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVG 129 (574)
T ss_pred HHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhc
Confidence 34333333344566667776666544433 334455555666666777888999999998886543
No 90
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.64 E-value=1.2e+02 Score=27.58 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 298 LVLSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 298 l~l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
..++.|+++.+++.+++.||+.+.+..+.
T Consensus 13 ~~~i~Flil~~ll~~~l~~pi~~~l~~R~ 41 (164)
T PRK14471 13 WQTILFLILLLLLAKFAWKPILGAVKERE 41 (164)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455667778888999999999988754
No 91
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=27.44 E-value=95 Score=28.20 Aligned_cols=32 Identities=34% Similarity=0.723 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHhhC
Q 013078 174 VVIVSAAIGGIIFSCLGQP--VIVGYLLAGSIIG 205 (450)
Q Consensus 174 iilv~a~i~g~l~~rlglP--~ivGyIlaGilLG 205 (450)
+.+.++.+++++++++|+| .++|-++++.++.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~ 35 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLS 35 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 3456788899999999988 6777776666655
No 92
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=27.30 E-value=84 Score=33.21 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhccchhhHh
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLW 404 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~ 404 (450)
+.|.++.+||..+|+++--+.+.
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~~ 82 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREIIV 82 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999766543
No 93
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=26.97 E-value=6.9e+02 Score=25.47 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=28.9
Q ss_pred hhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHH
Q 013078 373 KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 406 (450)
Q Consensus 373 ~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~ 406 (450)
++..+.+.++..++..+=|+.+|+.+|++.+.+.
T Consensus 264 ~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 264 AAVVSALKSLSKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHhc
Confidence 5666778888889999999999999999998764
No 94
>PRK05346 Na(+)-translocating NADH-quinone reductase subunit C; Provisional
Probab=26.32 E-value=58 Score=32.46 Aligned_cols=92 Identities=12% Similarity=0.231 Sum_probs=51.5
Q ss_pred CCCcchhhHHHHHHHHHHHhhhcccccCChHHHhhhhhccccCCCCCCCCCCcHHHHHHHHHhccCCCCcCCCC--CCCC
Q 013078 8 GGGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEFPDNEQSSG--SDGS 85 (450)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 85 (450)
+.-..|.+.+|++|++++.+.......+.++..+...--|+.+...-.. ...+.+.|++-++.++-+.++-+- .+..
T Consensus 9 ~~ti~~a~~l~lVcs~~vs~~a~~Lk~~q~~N~~ld~~~nIL~aag~~~-~~~v~~~f~~~i~~~lv~l~~G~~~~~~~~ 87 (256)
T PRK05346 9 GKTLIVVVVLCLVCSVIVAGAAVGLKPRQEENKLLDKQKNILAAAGLVT-KKDVLELYAKRIEPRLVDLATGELVEGDPA 87 (256)
T ss_pred ceEEEEEeehHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHCCCCC-chhHHHHHhhceeeEEEEcCCCCEeccccc
Confidence 4456788899999999998886544444443322222222222111111 236889998877666655544432 2355
Q ss_pred Ccchhhhhccceeee
Q 013078 86 SFNSSVADQQAVLET 100 (450)
Q Consensus 86 ~f~~~~~~~~~~~e~ 100 (450)
.||...+.+......
T Consensus 88 ~~d~~~a~~~~~~s~ 102 (256)
T PRK05346 88 TFDERKAAKDPATSI 102 (256)
T ss_pred ccchhhhhcChhhhh
Confidence 677766655443333
No 95
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=26.01 E-value=83 Score=33.68 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhccchhhHhH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~~ 405 (450)
+.|.++.+||..+|+++--..+..
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~G 90 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIG 90 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 368999999999999997766543
No 96
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=25.82 E-value=2.6e+02 Score=25.70 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 300 LSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 300 l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
++-|+++.+++.+++.+|+.+.+..+.
T Consensus 29 ~inflil~~lL~~fl~kPi~~~l~~R~ 55 (167)
T PRK08475 29 TINFLIFVGILWYFAAKPLKNFYKSRI 55 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777788889999887654
No 97
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=25.35 E-value=3.1e+02 Score=27.43 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCc-chhhHHHhhhcHHHHHH-HHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013078 357 LGSFMAGVMISTTD-FAKHTLDQVEPIRNLFA-ALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 434 (450)
Q Consensus 357 LGAFlAGl~ls~~~-~~~~l~~~ie~i~~~F~-plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~ 434 (450)
+--++.|+.+++.. ...+..+++.++..++. -+.+..++. +...++.+.+.++...++..+.-+...+...+.+|.
T Consensus 144 ~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~--~~~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l 221 (286)
T TIGR00841 144 LIPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGI--NVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGL 221 (286)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHh--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44556666666431 11122222444443222 222333333 333344444434444444556667778888888888
Q ss_pred ChHHHHHHhc
Q 013078 435 SMRTSFLVSW 444 (450)
Q Consensus 435 ~~r~a~~vGl 444 (450)
+.+++..+++
T Consensus 222 ~~~~~~t~~~ 231 (286)
T TIGR00841 222 PWARCRTISI 231 (286)
T ss_pred CHhhheeeee
Confidence 8766655543
No 98
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=24.70 E-value=1.6e+02 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 298 LVLSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 298 l~l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
..++.|+++.+++.+++.||+.+.+..+.
T Consensus 12 ~qli~Flil~~~l~kfl~kPi~~~l~~R~ 40 (141)
T PRK08476 12 ATFVVFLLLIVILNSWLYKPLLKFMDNRN 40 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888999999999888654
No 99
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.29 E-value=1.5e+02 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 300 LSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 300 l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
++.|+++.+++.+++.||+.+.+..+.
T Consensus 11 ~i~Flil~~il~~~~~~pi~~~l~~R~ 37 (156)
T PRK05759 11 LIAFLILVWFIMKFVWPPIMKALEERQ 37 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345666667788899999999988764
No 100
>PRK09903 putative transporter YfdV; Provisional
Probab=24.28 E-value=3.1e+02 Score=27.61 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC--cchhhHHHhhhcHHHHHHHHHHHHHhhccchh
Q 013078 355 LELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVH 401 (450)
Q Consensus 355 ~~LGAFlAGl~ls~~--~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~ 401 (450)
+.+=+.++|+.++-. +..+.+.+.++.+++...|+=...+|+.+...
T Consensus 174 P~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~ 222 (314)
T PRK09903 174 PVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAH 222 (314)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444455555544432 22345556666667777777777777776544
No 101
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=24.18 E-value=91 Score=33.02 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhccchhhHhH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~~ 405 (450)
+.|.++++||..+|+++--..+..
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~G 86 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLEG 86 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999997665543
No 102
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=23.62 E-value=5.4e+02 Score=25.79 Aligned_cols=85 Identities=11% Similarity=-0.010 Sum_probs=42.7
Q ss_pred HHHHHHHHHHh-cCCc-chhhHHHhhhcH-HHHHHHHHHHHHhhccchh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013078 356 ELGSFMAGVMI-STTD-FAKHTLDQVEPI-RNLFAALFLSSIGMLIHVH-FLWNHVDILLASVILVIIVKTAVGTIVTK- 430 (450)
Q Consensus 356 ~LGAFlAGl~l-s~~~-~~~~l~~~ie~i-~~~F~plFF~sIG~~id~~-~l~~~~~~ll~lv~~~vv~K~l~~~l~~~- 430 (450)
.+.....|..+ ++.+ ..++-.+.+..+ -++..|......-.+.+.+ .....+. ...........-++.++...+
T Consensus 13 v~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 91 (321)
T TIGR00946 13 ILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSP-VVLFLWGAFSGSYALIWLITKP 91 (321)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666 4443 345555666666 4899998876665554443 1111122 122222233333444555555
Q ss_pred hcCCChHHHHH
Q 013078 431 LFGYSMRTSFL 441 (450)
Q Consensus 431 ~~g~~~r~a~~ 441 (450)
..+.+.+++..
T Consensus 92 ~~~~~~~~~~~ 102 (321)
T TIGR00946 92 LFKADYGKLSG 102 (321)
T ss_pred HHhcccchhhH
Confidence 55666555433
No 103
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=23.43 E-value=97 Score=32.80 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhccchhhHhH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~~ 405 (450)
+.|.++++||..+|+++--..+..
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~G 86 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLEG 86 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcC
Confidence 368999999999999997766533
No 104
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=22.68 E-value=3e+02 Score=28.18 Aligned_cols=88 Identities=8% Similarity=0.033 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCcch----hhHHHhhhcHHHHHHH---HHHHHHhhccchhhHhHHHHHHHH---HHHHHHHHHHHHHH
Q 013078 357 LGSFMAGVMISTTDFA----KHTLDQVEPIRNLFAA---LFLSSIGMLIHVHFLWNHVDILLA---SVILVIIVKTAVGT 426 (450)
Q Consensus 357 LGAFlAGl~ls~~~~~----~~l~~~ie~i~~~F~p---lFF~sIG~~id~~~l~~~~~~ll~---lv~~~vv~K~l~~~ 426 (450)
+--.+.|+.+++...+ +...+++.+.-+.+.. ++.+..-...+.+.+..++..+.. .+++....-+...+
T Consensus 185 ~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~ 264 (328)
T TIGR00832 185 GIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTF 264 (328)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666654221 2233355554332222 222222233333444444332222 23344456677778
Q ss_pred HHHHhcCCChHHHHHHhc
Q 013078 427 IVTKLFGYSMRTSFLVSW 444 (450)
Q Consensus 427 l~~~~~g~~~r~a~~vGl 444 (450)
...|..|.+.+++..+.+
T Consensus 265 ~~~r~~~l~~~~~~a~~~ 282 (328)
T TIGR00832 265 ALAKKLGLPYSITAPAAF 282 (328)
T ss_pred HHHHHhCcChhhhhhhee
Confidence 888999999888776654
No 105
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=22.10 E-value=4.8e+02 Score=21.90 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=29.0
Q ss_pred HhhhcHHHHH---HHHHH--HHHhhccchhhHhHHHHHHHHHHHHHHHHHHHH
Q 013078 377 DQVEPIRNLF---AALFL--SSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 424 (450)
Q Consensus 377 ~~ie~i~~~F---~plFF--~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~ 424 (450)
+.+++-.+++ +++|| +.+|..-+.+.+.++++.++..++..++.-+.+
T Consensus 38 ~~i~~~a~~Ll~~m~lfFvPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~ 90 (96)
T PF03788_consen 38 EWIEPAANFLLKNMALFFVPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAV 90 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 36666 678887778888888777666555544443333
No 106
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.44 E-value=1.1e+02 Score=32.98 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhccchhhHhH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l~~ 405 (450)
+.|.++.+||..+|+++--..+..
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~G 95 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLFG 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368999999999999997666543
No 107
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=21.08 E-value=96 Score=32.02 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 013078 355 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 434 (450)
Q Consensus 355 ~~LGAFlAGl~ls~~~~~~~l~~~ie~i~~~F~plFF~sIG~~id~~~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~g~ 434 (450)
..+.+++.|+.+.+.+ +++.+...+=.++++|++-...|..++++.+.......+.+-+..++......+...|+++.
T Consensus 175 ~allplliG~~lgnl~--~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 175 GAVLPLLVGFILGNLD--PELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHHHHhHH--HhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeec
Confidence 3447888899998742 22333333334679999999999999999886643222222222333344444555577643
No 108
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=21.03 E-value=6e+02 Score=22.69 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcH---HHHHHH--HHHhhCcCCccchhhHHH-----------------------
Q 013078 166 LRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYLL--AGSIIGPGGLKFISELVQ----------------------- 217 (450)
Q Consensus 166 ~~li~~l~iilv~a~i~g~l~~rlglP~---ivGyIl--aGilLGPsgL~~I~~l~q----------------------- 217 (450)
.+++.++.+++.+.++..++.+-+++|. ++|.++ ..+..+-.-++++++-.+
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~~~iv~l~wv~~~a~~Ll~~m~llFVPa~VgVm~y~~~ 84 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLALKIVKLEWVERGATFLLRNMALLFVPAGVGVMNYFDL 84 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3678899999999999888888787763 555433 222333223333332211
Q ss_pred --HhcCchHHHHHHHHHhhhccHHHHHHHHHhc
Q 013078 218 --LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ 248 (450)
Q Consensus 218 --l~G~~~~~al~iG~~Ls~TStaVV~~iL~e~ 248 (450)
-.+++......++.++.+-.|+.+...+.+.
T Consensus 85 l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~ 117 (128)
T COG1380 85 LAADGLPILVVIIISTLLVLLVTGWVVQLLIRW 117 (128)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133455566677777777777776666443
No 109
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.88 E-value=1.8e+02 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 013078 300 LSIYLTVTSILSWSFVPRFLKLMIQLS 326 (450)
Q Consensus 300 l~~fl~v~~lv~~~l~~~l~~~l~~~~ 326 (450)
++.|+++.+++.+++.||+.+.+..|.
T Consensus 38 lI~F~iL~~ll~k~l~~PI~~~l~~R~ 64 (181)
T PRK13454 38 LVTLVAIYFVLTRVALPRIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677788899999999988764
No 110
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=20.73 E-value=1.9e+02 Score=27.28 Aligned_cols=57 Identities=21% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhCcCCccchhhHHHHhcCchHHHHHHHHHhhhccHHHHHHHHHhccc
Q 013078 181 IGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS 250 (450)
Q Consensus 181 i~g~l~~rlglP~ivGyIlaGilLGPsgL~~I~~l~ql~G~~~~~al~iG~~Ls~TStaVV~~iL~e~~~ 250 (450)
-++...+|+|+|.-+|+|-+=+.+.+--+. ++++.+.+|+ |-|+...++|-|++.++
T Consensus 14 ~fae~m~r~G~nrtVG~iYgilyls~~Pmt-l~Ei~E~lg~------------Sks~vS~~lkkL~~~~l 70 (177)
T COG1510 14 HFAETMSRWGINRTVGQIYGILYLSRKPLT-LDEIAEALGM------------SKSNVSMGLKKLQDWNL 70 (177)
T ss_pred HHHHHHHHhCCcchHHHHhhhheecCCCcc-HHHHHHHHCC------------CcchHHHHHHHHHhcch
Confidence 467889999999999999887777655444 3456666665 44666777788888764
Done!