Query 013078
Match_columns 450
No_of_seqs 175 out of 1310
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.4 2.6E-12 8.7E-17 131.9 12.3 247 167-447 61-336 (388)
2 2l0e_A Sodium/hydrogen exchang 64.9 1.1 3.7E-05 29.6 -0.5 29 222-250 2-30 (33)
3 3zux_A Transporter, ASBTNM; tr 32.9 2.6E+02 0.009 27.1 10.7 58 379-436 41-101 (332)
4 2k3c_A TMIX peptide; membrane 20.1 1 3.6E-05 29.6 -6.5 25 344-368 6-30 (33)
5 1b9u_A Protein (ATP synthase); 18.3 1.9E+02 0.0067 18.2 4.6 23 300-322 11-33 (34)
6 1zcd_A Na(+)/H(+) antiporter 1 14.3 1.4E+02 0.0046 30.2 4.2 22 382-403 63-84 (388)
7 3u85_B Histone-lysine N-methyl 14.2 60 0.002 18.9 0.9 9 2-10 7-15 (21)
8 2l6o_A Uncharacterized protein 12.1 92 0.0031 26.1 1.8 20 137-156 46-65 (114)
9 3zux_A Transporter, ASBTNM; tr 10.5 1E+03 0.036 22.7 23.2 24 257-280 131-154 (332)
10 1cn3_F Fragment of coat protei 7.4 1.4E+02 0.0047 18.4 0.8 6 6-11 4-9 (29)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.36 E-value=2.6e-12 Score=131.88 Aligned_cols=247 Identities=17% Similarity=0.120 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HhcCCcHHHHHHHHHHhhCcCCccchhhHHHHhcCchHHHHHHHHHhhhccH
Q 013078 167 RLISDLVVVIVSAAIGGIIF--------SCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSST 238 (450)
Q Consensus 167 ~li~~l~iilv~a~i~g~l~--------~rlglP~ivGyIlaGilLGPsgL~~I~~l~ql~G~~~~~al~iG~~Ls~TSt 238 (450)
+++.|-...+++=...=++= ++.+.-......-.|=++-|..+.. .++....++.....+...|+.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~------~~~~~~~~~~~gw~ip~ATdI 134 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL------AFNYADPITREGWAIPAATDI 134 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG------GGCCSSTTHHHHTSSSSCCCH
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH------HHhcCChhhhhhhHHHHHHHH
Confidence 46777666555544443441 2233322223334455556655432 134444556667777889999
Q ss_pred HHHHHHHHhcccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013078 239 AVVVKFLVEQNSNN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPR 317 (450)
Q Consensus 239 aVV~~iL~e~~~~~-s~~g~lilg~avl~Dv~~illlall~~L~~~~~~~~~~~sl~~~ll~l~~fl~v~~lv~~~l~~~ 317 (450)
+..+.++...+... +..++.+++.+++||+.+++++|++.. ++. .+..+. .. ++.+++. +
T Consensus 135 Afal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~---~~~~l~---~~-~~~~~~~-----~---- 195 (388)
T 1zcd_A 135 AFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDL---SMASLG---VA-AVAIAVL-----A---- 195 (388)
T ss_dssp HHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCC---CHHHHH---HH-HHHHHHH-----H----
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCc---cHHHHH---HH-HHHHHHH-----H----
Confidence 99999999987654 445589999999999999999998742 221 122111 11 1111111 1
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcCC-----cchhhHHHhhhcHHH-HHHHHH-
Q 013078 318 FLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-----DFAKHTLDQVEPIRN-LFAALF- 390 (450)
Q Consensus 318 l~~~l~~~~~~~~El~ll~~lal~ll~~~iae~lGls~~LGAFlAGl~ls~~-----~~~~~l~~~ie~i~~-~F~plF- 390 (450)
++ .|. +.++......+ ++...+.+++.|+|+.+|+|++|++++.. ...++++|+++|+.. +++|+|
T Consensus 196 ~l---~r~--~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFa 268 (388)
T 1zcd_A 196 VL---NLC--GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFA 268 (388)
T ss_dssp HH---HHT--TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HH---HHh--cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 12222222222 23344566999999999999999999985 246789999999975 889999
Q ss_pred HHHHhhccchh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHhccCC
Q 013078 391 LSSIGMLIHVH---FLWNHVDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVSWLPK 447 (450)
Q Consensus 391 F~sIG~~id~~---~l~~~~~~ll~lv~~~vv~K~l~~~l~~~~~----------g~~~r~a~~vGl~La 447 (450)
|+..|.++|.. .+.+. ..+.+++..+++|+++++..++.. |++|||...+|+.+.
T Consensus 269 FanaGv~l~~~~~~~l~~~--~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g 336 (388)
T 1zcd_A 269 FANAGVSLQGVTLDGLTSI--LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG 336 (388)
T ss_dssp HHHCCCCCSSSCCCTHHHH--SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred HHhcCeeecccchhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence 99999999974 33221 123444456899988855555554 999999988777654
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=64.85 E-value=1.1 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhhhccHHHHHHHHHhccc
Q 013078 222 KLSEGVFVGSFLSMSSTAVVVKFLVEQNS 250 (450)
Q Consensus 222 ~~~~al~iG~~Ls~TStaVV~~iL~e~~~ 250 (450)
++..++++|+++|.|++..+..++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 34567889999999999999999999864
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=32.95 E-value=2.6e+02 Score=27.09 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=39.7
Q ss_pred hhcHHHHHHHHHHHHHhhccchhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 013078 379 VEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKLFGYSM 436 (450)
Q Consensus 379 ie~i~~~F~plFF~sIG~~id~~~l~~---~~~~ll~lv~~~vv~K~l~~~l~~~~~g~~~ 436 (450)
+++.......+-+...|+.++++.+.. ++...+...+.-.+...+.++...+.++.+.
T Consensus 41 ~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~ 101 (332)
T 3zux_A 41 AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA 101 (332)
T ss_dssp GGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 344555667777889999999988774 4555555455556667777777777776664
No 4
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=20.05 E-value=1 Score=29.64 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhcC
Q 013078 344 SAWCSDKLGLSLELGSFMAGVMIST 368 (450)
Q Consensus 344 ~~~iae~lGls~~LGAFlAGl~ls~ 368 (450)
.+.++|.+++|++++.+.+|+.+++
T Consensus 6 ~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 6 AYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp TTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHhCcChHHHHHHHHHHHhh
Confidence 4567899999999999999998875
No 5
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=18.30 E-value=1.9e+02 Score=18.20 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 013078 300 LSIYLTVTSILSWSFVPRFLKLM 322 (450)
Q Consensus 300 l~~fl~v~~lv~~~l~~~l~~~l 322 (450)
.+.|+++.+++.+++.||+.+-+
T Consensus 11 ~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 11 AIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666778888888876643
No 6
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=14.27 E-value=1.4e+02 Score=30.22 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhccchhhH
Q 013078 382 IRNLFAALFLSSIGMLIHVHFL 403 (450)
Q Consensus 382 i~~~F~plFF~sIG~~id~~~l 403 (450)
+.|-++.+||..+|++++.+.+
T Consensus 63 indglm~lFff~vGLEik~e~l 84 (388)
T 1zcd_A 63 INDALMAVFFLLVGLEVKRELM 84 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHhhHHHh
Confidence 3689999999999999988766
No 7
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=14.17 E-value=60 Score=18.89 Aligned_cols=9 Identities=67% Similarity=1.221 Sum_probs=5.9
Q ss_pred CCCCCCCCC
Q 013078 2 ARRGGSGGG 10 (450)
Q Consensus 2 ~~~~~~~~~ 10 (450)
||.|||+++
T Consensus 7 arpg~s~~s 15 (21)
T 3u85_B 7 ARPGTTGGG 15 (26)
T ss_pred cCCCcccCC
Confidence 677776554
No 8
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=12.10 E-value=92 Score=26.10 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.9
Q ss_pred CccceeeeccCCeeeeccCC
Q 013078 137 DDEMTLIDKKDNVFVMSNKK 156 (450)
Q Consensus 137 ~~~~~lid~~~n~~~~s~p~ 156 (450)
.+-++|||++++.|.+....
T Consensus 46 ~~~d~LIDs~G~~y~L~~~~ 65 (114)
T 2l6o_A 46 QYGDKLVDSNFHCFVLEEDA 65 (114)
T ss_dssp CTTCCEEETTCEEEEECTTS
T ss_pred CCCCEEEeCCCCEEEecCCC
Confidence 45579999999999997666
No 9
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=10.53 E-value=1e+03 Score=22.66 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013078 257 QVTIGTLILQDCAVGLLFALLPVL 280 (450)
Q Consensus 257 ~lilg~avl~Dv~~illlall~~L 280 (450)
...+....++.+.+.+...+...+
T Consensus 131 ~la~~~~~~stll~~~~~Pl~~~l 154 (332)
T 3zux_A 131 ALSVAVTSVSTLTSPLLTPAIFLM 154 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777778888877766555443
No 10
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=7.39 E-value=1.4e+02 Score=18.39 Aligned_cols=6 Identities=83% Similarity=1.620 Sum_probs=2.3
Q ss_pred CCCCCc
Q 013078 6 GSGGGA 11 (450)
Q Consensus 6 ~~~~~~ 11 (450)
|.||||
T Consensus 4 ggggga 9 (29)
T 1cn3_F 4 GGGGGA 9 (29)
T ss_dssp CCCSTT
T ss_pred CCCCcc
Confidence 333333
Done!