Query 013078
Match_columns 450
No_of_seqs 175 out of 1310
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 03:47:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013078.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013078hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 23.2 1.2E+02 0.0085 21.4 7.4 14 341-354 53-66 (86)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 13.3 30 0.0022 21.1 1.0 18 136-153 9-26 (33)
3 d1ecib_ a.33.1.1 (B:) Ectatomi 8.0 72 0.0053 18.8 1.3 17 54-70 17-33 (34)
4 d1wxma1 d.15.1.5 (A:8-80) A-Ra 7.8 69 0.005 22.8 1.3 17 55-72 18-34 (73)
5 d2yvxa3 f.57.1.1 (A:276-448) M 5.9 6.3E+02 0.046 20.0 8.0 30 233-262 55-84 (173)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 5.6 3.3E+02 0.024 19.7 4.8 16 310-325 16-31 (158)
7 d1cola_ f.1.1.1 (A:) Colicin A 5.1 3.5E+02 0.025 22.5 4.7 32 172-203 144-179 (197)
8 d1yqfa1 d.25.1.1 (A:14-195) Hy 4.8 3.1E+02 0.022 22.0 4.2 45 59-105 4-49 (182)
9 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 4.8 1.7E+02 0.013 20.7 2.1 17 55-72 19-35 (77)
10 d1v7wa2 b.30.5.3 (A:1-270) Chi 4.3 1.7E+02 0.013 25.2 2.2 18 143-160 6-23 (270)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=23.22 E-value=1.2e+02 Score=21.36 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhchh
Q 013078 341 CLLSAWCSDKLGLS 354 (450)
Q Consensus 341 ~ll~~~iae~lGls 354 (450)
++....+-+.+|++
T Consensus 53 ~i~~~~~L~~~Gi~ 66 (86)
T d2vv5a3 53 AFTLIAALGRVGVQ 66 (86)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 33444445677776
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.31 E-value=30 Score=21.14 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCccceeeeccCCeeeec
Q 013078 136 SDDEMTLIDKKDNVFVMS 153 (450)
Q Consensus 136 ~~~~~~lid~~~n~~~~s 153 (450)
-+++|.-+|..|+.|+..
T Consensus 9 LDGvPFtvD~~n~i~Cv~ 26 (33)
T d2dloa2 9 LDGIPFTVDATSQIHCIE 26 (33)
T ss_dssp CTTSCEECCTTCCCEEHH
T ss_pred cCCCcEEEcCCCCEeehh
Confidence 368899999999999964
No 3
>d1ecib_ a.33.1.1 (B:) Ectatomin subunit B, EB {Ant (Ectatomma tuberculatum), venom [TaxId: 39300]}
Probab=8.03 E-value=72 Score=18.80 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=12.2
Q ss_pred CCCCCCcHHHHHHHHHh
Q 013078 54 EDSGDGSIAKMFDRVLE 70 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~~~ 70 (450)
.+.-|||||.|+.+--+
T Consensus 17 akkcegsiatmikkkcd 33 (34)
T d1ecib_ 17 AKKCEGSIATMIKKKCD 33 (34)
T ss_dssp HTTBSTTHHHHHHHHSC
T ss_pred HHHccchHHHHHHHhcC
Confidence 34568899999976543
No 4
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.77 E-value=69 Score=22.82 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=13.9
Q ss_pred CCCCCcHHHHHHHHHhcc
Q 013078 55 DSGDGSIAKMFDRVLEKE 72 (450)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ 72 (450)
.+++ |+.+++.+++||.
T Consensus 18 rpG~-tir~~L~k~l~kR 34 (73)
T d1wxma1 18 RDGM-SVYDSLDKALKVR 34 (73)
T ss_dssp CSSC-BSHHHHHHHHHTT
T ss_pred cCCC-CHHHHHHHHHHHc
Confidence 3454 9999999999984
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.88 E-value=6.3e+02 Score=20.05 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=20.5
Q ss_pred hhhccHHHHHHHHHhcccCCcchhHHHHHH
Q 013078 233 LSMSSTAVVVKFLVEQNSNNALHGQVTIGT 262 (450)
Q Consensus 233 Ls~TStaVV~~iL~e~~~~~s~~g~lilg~ 262 (450)
.+.-|.++++|-+...+...++..+.+...
T Consensus 55 ~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE 84 (173)
T d2yvxa3 55 TGNQSATLIIRALATRDLDLRDWRRVFLKE 84 (173)
T ss_dssp HHHHHHHHHHHHHHTTCSCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHH
Confidence 345566788888877766677777766543
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.64 E-value=3.3e+02 Score=19.68 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=10.2
Q ss_pred HHhhHHHHHHHHHHHh
Q 013078 310 LSWSFVPRFLKLMIQL 325 (450)
Q Consensus 310 v~~~l~~~l~~~l~~~ 325 (450)
+.-..+|.+.++..+.
T Consensus 16 Laaia~P~~~~~~~~a 31 (158)
T d2pila_ 16 LAAVALPAYQDYTARA 31 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3335678888877653
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=5.06 E-value=3.5e+02 Score=22.51 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHh
Q 013078 172 LVVVIVSAAIGGIIFSCLGQPV----IVGYLLAGSI 203 (450)
Q Consensus 172 l~iilv~a~i~g~l~~rlglP~----ivGyIlaGil 203 (450)
.+.+.+++..+|.+.-.++.|. ++|+++.|++
T Consensus 144 ~va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v 179 (197)
T d1cola_ 144 SVALGIFSATLGAYALSLGVPAIAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 3445566777777777888882 6667666654
No 8
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=4.84 E-value=3.1e+02 Score=22.00 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHhccCCCCcCCCC-CCCCCcchhhhhccceeeeEEEee
Q 013078 59 GSIAKMFDRVLEKEFPDNEQSSG-SDGSSFNSSVADQQAVLETVAKIT 105 (450)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~e~v~~~~ 105 (450)
+.+++.+.+=++.|-...++++. +....| ++.+..+.-|-++|-+
T Consensus 4 ~~L~~~l~~Ei~~E~~~~~~~~~p~~~~gf--~i~d~~g~~~v~L~r~ 49 (182)
T d1yqfa1 4 AALADATRRELEEEMGRSDKPEQPTPPAGW--QVVRKPGTCTFDLTKS 49 (182)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCCCCCTTC--EEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCCC--EEEEcCCceEEEEEEe
Confidence 46788888888888766665553 333456 5555655545555543
No 9
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.76 E-value=1.7e+02 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCCCCcHHHHHHHHHhcc
Q 013078 55 DSGDGSIAKMFDRVLEKE 72 (450)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ 72 (450)
.+++ |+.+++.+++||.
T Consensus 19 rpG~-tird~L~k~l~kR 35 (77)
T d1c1yb_ 19 RNGM-SLHDCLMKALKVR 35 (77)
T ss_dssp CTTC-BHHHHHHHHHHTT
T ss_pred cCCC-CHHHHHHHHHHHc
Confidence 3444 9999999999984
No 10
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=4.30 E-value=1.7e+02 Score=25.25 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=13.6
Q ss_pred eeccCCeeeeccCCCCcc
Q 013078 143 IDKKDNVFVMSNKKSKYP 160 (450)
Q Consensus 143 id~~~n~~~~s~p~~~~~ 160 (450)
.|.++++||+++|..+.|
T Consensus 6 F~~~~~eyvi~~~~tP~P 23 (270)
T d1v7wa2 6 FDNDNREYVITRPDVPAP 23 (270)
T ss_dssp EETTTTEEEESCSCCSSC
T ss_pred cCCCCCEEEEcCCCCCCc
Confidence 477889999999875444
Done!